AlfalfaGEDB | MS.gene41472

M. sativa cultivar XinJiangDaYe / MS.gene41472

KEGG: -
GO: -
PFAM: PF18117.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41472.t1	XP_004500366.1	81.2	208	37	1	1	206	373	580	3.80E-91	344.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41472.t1	Q4F883	40.3	191	107	3	6	190	337	526	3.0e-36	153.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41472.t1	A0A1S2Y842	81.2	208	37	1	1	206	373	580	2.7e-91	344.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049567	MS.gene41472	0.808731	2.68E-50	-1.69E-46
MS.gene051207	MS.gene41472	0.808058	3.73E-50	-1.69E-46
MS.gene051492	MS.gene41472	0.801332	9.46E-49	-1.69E-46
MS.gene052208	MS.gene41472	0.818771	1.65E-52	-1.69E-46
MS.gene053646	MS.gene41472	0.804709	1.90E-49	-1.69E-46
MS.gene05415	MS.gene41472	0.802586	5.23E-49	-1.69E-46
MS.gene057026	MS.gene41472	0.817032	4.07E-52	-1.69E-46
MS.gene058477	MS.gene41472	0.80316	3.98E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41472.t1	MTR_3g467360	79.310	203	40	1	6	206	379	581	1.97e-115	340
MS.gene41472.t1	MTR_3g467360	79.310	203	40	1	6	206	373	575	2.04e-115	340
MS.gene41472.t1	MTR_6g007975	71.429	203	56	1	6	206	375	577	1.56e-101	305
MS.gene41472.t1	MTR_6g007985	68.627	204	62	1	5	206	298	501	4.92e-99	296
MS.gene41472.t1	MTR_6g008015	68.627	204	62	1	5	206	375	578	2.66e-98	296
MS.gene41472.t1	MTR_6g008055	67.961	206	64	1	1	206	372	575	1.23e-96	292
MS.gene41472.t1	MTR_6g007980	58.373	209	83	3	1	205	367	575	5.48e-80	249
MS.gene41472.t1	MTR_6g007980	58.373	209	83	3	1	205	368	576	6.65e-80	249
MS.gene41472.t1	MTR_6g007980	58.373	209	83	3	1	205	369	577	6.80e-80	249
MS.gene41472.t1	MTR_0286s0040	61.828	186	45	2	23	206	226	387	3.23e-74	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41472.t1	AT5G14930	40.314	191	107	3	6	190	337	526	6.38e-44	154
MS.gene41472.t1	AT3G52430	27.485	171	112	4	15	177	354	520	2.83e-12	65.5

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Find 30 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTATTTGAATTTG+AGG	0.327326	3.1:-51975558	MS.gene41472:CDS
AAAGCAGCTATATTCGTTGG+TGG	0.600841	3.1:-51975478	MS.gene41472:CDS
AACGAGTATAAAGCAATTAA+GGG	0.451013	3.1:-51975455	MS.gene41472:CDS
AAGACTATGTTCATAATAAA+AGG	0.271277	3.1:-51975766	MS.gene41472:CDS
AATATTAAGCTGTATGCTAT+AGG	0.416242	3.1:-51975386	MS.gene41472:CDS
ACAGTTGGAGGAATGGTTGA+TGG	0.465873	3.1:-51975729	MS.gene41472:CDS
ACTTCAAACAGTTGGAGGAA+TGG	0.506869	3.1:-51975736	MS.gene41472:CDS
AGTCCCACCATATAACCAAC+GGG	0.547594	3.1:+51975847	None:intergenic
ATTGCTGAATACTATAGAAA+AGG	0.495339	3.1:-51975794	MS.gene41472:CDS
CAATACACGTAGAAAGAATG+TGG	0.608038	3.1:-51975681	MS.gene41472:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAAAGCTCACCATTTAC+TGG	-	chr3.1:51975404-51975423	MS.gene41472:CDS	30.0%
CTTTGTGCTAGAAAAATATC+TGG	+	chr3.1:51975838-51975857	None:intergenic	30.0%
GAACGAGTATAAAGCAATTA+AGG	-	chr3.1:51975876-51975895	MS.gene41472:CDS	30.0%
GTATGTTTATAAGTTGCTCA+AGG	-	chr3.1:51975798-51975817	MS.gene41472:CDS	30.0%
GTATTGTTTGTATCACTTGT+TGG	+	chr3.1:51975637-51975656	None:intergenic	30.0%
TAAAAAGCTCACCATTTACT+GGG	-	chr3.1:51975405-51975424	MS.gene41472:CDS	30.0%
CAATACACGTAGAAAGAATG+TGG	-	chr3.1:51975651-51975670	MS.gene41472:CDS	35.0%
CAGATGAAACCTCAAAAAGA+AGG	-	chr3.1:51975448-51975467	MS.gene41472:CDS	35.0%
GCTGAATACTATAGAAAAGG+CGG	-	chr3.1:51975541-51975560	MS.gene41472:CDS	35.0%
GTCTAAACACTTCAAACAGT+TGG	-	chr3.1:51975588-51975607	MS.gene41472:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	51975367	51975987	51975367	ID=MS.gene41472
chr3.1	mRNA	51975367	51975987	51975367	ID=MS.gene41472.t1;Parent=MS.gene41472
chr3.1	exon	51975367	51975987	51975367	ID=MS.gene41472.t1.exon1;Parent=MS.gene41472.t1
chr3.1	CDS	51975367	51975987	51975367	ID=cds.MS.gene41472.t1;Parent=MS.gene41472.t1

Gene Sequence

>MS.gene41472

ATGAGCTCACTGGTTGACCGTGATGTTACTGAGTTCCATAAAAAGCTCACCATTTACTGGGAGAAAATGGTTGAAGAAGTTCAGATGAAACCTCAAAAAGAAGGTGCAGCTTTTCGTACCCGTTGGTTATATGGTGGGACTACTTACAGGAGAATGGTTGAACCTCTAGCTATTGCTGAATACTATAGAAAAGGCGGTAAAGACTATGTTCATAATAAAAGGTCTAAACACTTCAAACAGTTGGAGGAATGGTTGATGGGAACAAATCCAACAAGTGATACAAACAATACACGTAGAAAGAATGTGGAGGCTATTTTGACTACAGATTCTTGCTTTTGGGCACATGTTGAAGAGGCTCTACTTTTATGCAGAGAGTTAAAGGTTGTCGAAGAGAAAGAAGAGACACTAAAGAAATTATTTGAATTTGAGGTGTATGTTTATAAGTTGCTCAAGGATTATGAAGTGTCGCCAGATATTTTTCTAGCACAAAGCAGCTATATTCGTTGGTGGAACGAGTATAAAGCAATTAAGGGATCATCATACACTTCAGCACTTGCAAACTTCATGAATGATGATTCCAATATTAAGCTGTATGCTATAGGAACTTATGATTTCCCCTGA

Protein sequence

>MS.gene41472.t1

MSSLVDRDVTEFHKKLTIYWEKMVEEVQMKPQKEGAAFRTRWLYGGTTYRRMVEPLAIAEYYRKGGKDYVHNKRSKHFKQLEEWLMGTNPTSDTNNTRRKNVEAILTTDSCFWAHVEEALLLCRELKVVEEKEETLKKLFEFEVYVYKLLKDYEVSPDIFLAQSSYIRWWNEYKAIKGSSYTSALANFMNDDSNIKLYAIGTYDFP