AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051492


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051492.t1 MTR_1g013790 91.270 252 20 2 1 251 5 255 6.51e-173 476
MS.gene051492.t1 MTR_1g013760 46.626 163 74 4 78 234 122 277 9.52e-42 144
MS.gene051492.t1 MTR_4g007060 36.466 266 131 4 2 229 45 310 2.31e-41 144
MS.gene051492.t1 MTR_4g007060 36.226 265 131 4 3 229 12 276 5.06e-41 142
MS.gene051492.t1 MTR_2g105060 37.121 264 123 6 2 229 53 309 9.12e-40 140
MS.gene051492.t1 MTR_2g105060 45.399 163 68 3 81 229 79 234 2.27e-39 137
MS.gene051492.t1 MTR_3g106060 41.250 160 83 2 81 229 123 282 3.09e-37 132
MS.gene051492.t1 MTR_7g110720 41.975 162 81 5 2 156 94 249 1.83e-32 122
MS.gene051492.t1 MTR_7g110720 38.378 185 82 6 2 156 94 276 2.40e-30 117
MS.gene051492.t1 MTR_3g053330 48.421 95 47 1 78 172 235 327 1.01e-26 107
MS.gene051492.t1 MTR_4g107970 52.439 82 37 1 75 156 159 238 2.14e-25 104
MS.gene051492.t1 MTR_4g107970 52.439 82 37 1 75 156 236 315 3.04e-25 104
MS.gene051492.t1 MTR_4g094412 42.342 111 52 2 56 156 186 294 4.08e-25 103
MS.gene051492.t1 MTR_4g094412 42.342 111 52 2 56 156 195 303 4.09e-25 103
MS.gene051492.t1 MTR_4g132430 55.263 76 32 1 81 156 114 187 1.49e-24 100
MS.gene051492.t1 MTR_2g023930 54.795 73 33 0 84 156 293 365 2.44e-24 101
MS.gene051492.t1 MTR_4g132430 54.795 73 33 0 84 156 249 321 4.49e-24 100
MS.gene051492.t1 MTR_4g007060 40.000 155 70 1 2 133 45 199 5.80e-24 96.7
MS.gene051492.t1 MTR_2g045360 50.575 87 40 2 94 180 209 292 3.72e-23 97.4
MS.gene051492.t1 MTR_2g088000 52.055 73 35 0 84 156 337 409 4.71e-23 98.2
MS.gene051492.t1 MTR_7g009730 61.017 59 23 0 95 153 218 276 7.78e-23 97.4
MS.gene051492.t1 MTR_4g049760 57.143 63 27 0 94 156 288 350 1.57e-22 96.3
MS.gene051492.t1 MTR_4g049790 53.030 66 31 0 91 156 307 372 1.82e-21 93.2
MS.gene051492.t1 MTR_5g097490 50.000 76 35 2 81 156 239 311 1.19e-19 87.4
MS.gene051492.t1 MTR_5g097490 42.029 69 38 2 94 162 90 156 7.65e-11 62.0
MS.gene051492.t1 MTR_5g074400 52.381 63 29 1 94 156 418 479 3.45e-19 86.7
MS.gene051492.t1 MTR_5g074400 48.333 60 29 2 97 156 244 301 1.66e-12 67.0
MS.gene051492.t1 MTR_5g094430 42.424 99 46 4 66 156 194 289 3.81e-19 86.3
MS.gene051492.t1 MTR_5g094430 42.424 99 46 4 66 156 216 311 4.24e-19 86.3
MS.gene051492.t1 MTR_3g056100 43.011 93 47 3 67 156 385 474 4.91e-19 86.3
MS.gene051492.t1 MTR_3g056100 43.011 93 47 3 67 156 372 461 5.04e-19 86.3
MS.gene051492.t1 MTR_3g056100 43.011 93 47 3 67 156 241 330 5.47e-19 85.9
MS.gene051492.t1 MTR_5g094430 42.424 99 46 4 66 156 328 423 5.54e-19 86.3
MS.gene051492.t1 MTR_3g056100 43.011 93 47 3 67 156 228 317 5.57e-19 85.9
MS.gene051492.t1 MTR_2g033820 45.745 94 43 3 95 181 202 294 5.97e-18 82.4
MS.gene051492.t1 MTR_3g009470 47.945 73 37 1 84 156 483 554 1.01e-17 82.4
MS.gene051492.t1 MTR_3g009470 42.667 75 34 3 89 156 266 338 1.07e-11 64.7
MS.gene051492.t1 MTR_4g013260 46.575 73 38 1 84 156 324 395 2.02e-17 81.3
MS.gene051492.t1 MTR_4g013260 45.902 61 32 1 96 156 184 243 2.06e-12 66.6
MS.gene051492.t1 MTR_7g071120 46.575 73 38 1 84 156 312 383 2.70e-17 81.3
MS.gene051492.t1 MTR_7g071120 34.058 138 63 7 83 220 158 267 5.07e-12 65.5
MS.gene051492.t1 MTR_3g031220 49.206 63 31 1 94 156 363 424 2.89e-17 80.9
MS.gene051492.t1 MTR_3g031220 50.000 60 28 2 97 156 199 256 6.34e-13 68.2
MS.gene051492.t1 MTR_7g011820 40.952 105 53 4 69 167 382 483 3.11e-17 80.9
MS.gene051492.t1 MTR_7g011820 48.333 60 29 2 97 156 229 286 4.18e-11 62.8
MS.gene051492.t1 MTR_4g094908 51.613 62 30 0 94 155 264 325 3.37e-17 80.1
MS.gene051492.t1 MTR_1g086790 50.769 65 31 1 95 159 157 220 5.07e-17 79.3
MS.gene051492.t1 MTR_2g024350 46.970 66 35 0 91 156 3 68 6.27e-17 77.4
MS.gene051492.t1 MTR_1g070455 48.485 66 33 1 94 158 291 356 1.35e-16 78.6
MS.gene051492.t1 MTR_2g024380 50.820 61 30 0 96 156 251 311 1.37e-16 79.0
MS.gene051492.t1 MTR_7g079010 53.333 60 27 1 94 153 139 197 1.87e-16 76.3
MS.gene051492.t1 MTR_7g080020 49.206 63 31 1 94 156 491 552 2.31e-16 78.6
MS.gene051492.t1 MTR_7g080020 43.750 80 41 3 96 175 280 355 2.50e-12 66.6
MS.gene051492.t1 MTR_5g042920 40.404 99 49 3 66 156 283 379 2.40e-16 78.2
MS.gene051492.t1 MTR_5g042920 35.922 103 58 3 97 199 152 246 6.55e-14 70.9
MS.gene051492.t1 MTR_5g016610 50.000 62 31 0 94 155 197 258 3.03e-16 76.6
MS.gene051492.t1 MTR_7g109800 46.053 76 38 2 95 170 144 216 3.89e-16 76.6
MS.gene051492.t1 MTR_4g094588 41.111 90 43 3 95 175 177 265 4.02e-16 77.0
MS.gene051492.t1 MTR_7g028415 48.387 62 31 1 94 155 91 151 4.66e-16 73.9
MS.gene051492.t1 MTR_7g028710 48.387 62 31 1 94 155 91 151 4.66e-16 73.9
MS.gene051492.t1 MTR_1g015140 48.333 60 30 1 94 153 100 158 4.71e-16 73.6
MS.gene051492.t1 MTR_7g080000 47.619 63 32 1 94 156 430 491 4.87e-16 77.8
MS.gene051492.t1 MTR_7g080000 41.975 81 43 3 95 175 233 309 7.32e-13 68.2
MS.gene051492.t1 MTR_4g082580 42.683 82 43 3 75 156 260 337 5.30e-16 77.0
MS.gene051492.t1 MTR_5g091390 48.387 62 31 1 95 156 156 216 6.71e-16 75.9
MS.gene051492.t1 MTR_2g016770 48.333 60 31 0 97 156 36 95 8.01e-16 74.3
MS.gene051492.t1 MTR_2g016770 48.333 60 31 0 97 156 28 87 9.17e-16 73.9
MS.gene051492.t1 MTR_7g100510 46.970 66 34 1 91 156 356 420 1.30e-15 75.9
MS.gene051492.t1 MTR_7g100510 48.571 70 34 2 97 166 190 257 6.49e-15 73.9
MS.gene051492.t1 MTR_1g009613 46.774 62 33 0 94 155 260 321 2.05e-15 75.1
MS.gene051492.t1 MTR_8g087000 48.333 60 31 0 97 156 77 136 2.14e-15 73.6
MS.gene051492.t1 MTR_8g087000 48.333 60 31 0 97 156 78 137 2.15e-15 73.6
MS.gene051492.t1 MTR_0117s0040 51.667 60 29 0 94 153 72 131 4.57e-15 72.8
MS.gene051492.t1 MTR_3g095080 44.615 65 35 1 94 158 142 205 5.29e-15 72.0
MS.gene051492.t1 MTR_3g095080 44.615 65 35 1 94 158 166 229 5.71e-15 72.4
MS.gene051492.t1 MTR_3g104750 46.667 60 31 1 94 153 102 160 7.49e-15 70.5
MS.gene051492.t1 MTR_5g043880 37.615 109 57 4 95 193 123 230 7.62e-15 72.8
MS.gene051492.t1 MTR_8g007270 43.939 66 36 1 94 159 152 216 9.47e-15 71.6
MS.gene051492.t1 MTR_3g108960 50.000 60 30 0 94 153 312 371 1.10e-14 73.2
MS.gene051492.t1 MTR_8g092140 43.077 65 36 1 94 158 158 221 1.34e-14 71.2
MS.gene051492.t1 MTR_1g077780 44.444 63 34 1 94 156 60 121 1.63e-14 69.3
MS.gene051492.t1 MTR_4g047580 42.424 66 38 0 91 156 276 341 3.71e-14 72.0
MS.gene051492.t1 MTR_7g109600 48.333 60 31 0 97 156 54 113 3.72e-14 70.5
MS.gene051492.t1 MTR_4g130900 46.032 63 33 1 94 156 357 418 3.80e-14 72.0
MS.gene051492.t1 MTR_2g083870 45.455 66 36 0 91 156 75 140 4.12e-14 70.5
MS.gene051492.t1 MTR_4g122530 40.506 79 44 2 78 156 192 267 4.85e-14 71.2
MS.gene051492.t1 MTR_4g127040 47.541 61 32 0 94 154 243 303 7.55e-14 70.1
MS.gene051492.t1 MTR_8g092010 35.897 117 64 5 40 156 62 167 1.25e-13 67.8
MS.gene051492.t1 MTR_2g032030 43.939 66 37 0 93 158 264 329 1.33e-13 70.1
MS.gene051492.t1 MTR_2g032030 43.939 66 37 0 93 158 264 329 1.37e-13 70.1
MS.gene051492.t1 MTR_7g062220 50.877 57 27 1 97 153 125 180 1.47e-13 69.3
MS.gene051492.t1 MTR_8g096730 42.029 69 37 2 94 160 68 135 1.97e-13 66.2
MS.gene051492.t1 MTR_7g079040 34.951 103 56 1 54 156 123 214 2.48e-13 68.9
MS.gene051492.t1 MTR_8g098945 42.169 83 43 1 97 179 130 207 3.26e-13 68.2
MS.gene051492.t1 MTR_3g095040 43.284 67 37 1 94 160 116 181 3.96e-13 66.6
MS.gene051492.t1 MTR_3g031220 50.000 60 28 2 97 156 199 256 4.22e-13 68.6
MS.gene051492.t1 MTR_8g028565 45.902 61 33 0 97 157 156 216 4.57e-13 68.2
MS.gene051492.t1 MTR_6g086555 34.737 95 58 3 63 156 175 266 6.37e-13 68.2
MS.gene051492.t1 MTR_1g099600 43.333 60 34 0 97 156 186 245 5.19e-12 65.1
MS.gene051492.t1 MTR_5g074200 42.857 70 38 2 97 166 221 288 5.96e-12 64.7
MS.gene051492.t1 MTR_3g009470 47.541 61 30 2 96 156 280 338 8.54e-12 65.1
MS.gene051492.t1 MTR_8g067635 47.619 63 33 0 94 156 347 409 1.12e-11 64.7
MS.gene051492.t1 MTR_8g067650 47.619 63 33 0 94 156 337 399 1.27e-11 64.3
MS.gene051492.t1 MTR_6g053200 35.398 113 63 3 57 164 291 398 3.61e-11 63.2
MS.gene051492.t1 MTR_1g078260 35.870 92 55 3 64 154 217 305 4.47e-11 62.8
MS.gene051492.t1 MTR_3g090860 33.333 105 66 2 95 195 132 236 5.55e-11 62.0
MS.gene051492.t1 MTR_8g069935 42.623 61 35 0 96 156 331 391 9.54e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051492.t1 AT1G80840 36.996 273 135 5 2 237 27 299 2.56e-45 154
MS.gene051492.t1 AT4G31800 49.351 154 70 2 82 235 97 242 3.36e-42 144
MS.gene051492.t1 AT4G31800 49.351 154 70 2 82 235 162 307 1.12e-41 145
MS.gene051492.t1 AT2G25000 36.923 260 114 8 2 239 39 270 2.14e-37 132
MS.gene051492.t1 AT2G25000 42.623 183 77 6 57 239 73 227 4.72e-37 130
MS.gene051492.t1 AT2G25000 42.623 183 77 6 57 239 73 227 4.72e-37 130
MS.gene051492.t1 AT2G25000 43.169 183 76 6 57 239 95 249 2.04e-36 129
MS.gene051492.t1 AT4G04450 47.191 89 47 0 84 172 186 274 4.25e-26 105
MS.gene051492.t1 AT4G04450 47.191 89 47 0 84 172 280 368 1.09e-25 105
MS.gene051492.t1 AT4G22070 56.164 73 32 0 84 156 285 357 3.02e-25 104
MS.gene051492.t1 AT4G22070 56.164 73 32 0 84 156 285 357 3.02e-25 104
MS.gene051492.t1 AT4G22070 56.164 73 32 0 84 156 285 357 3.02e-25 104
MS.gene051492.t1 AT4G22070 56.164 73 32 0 84 156 285 357 3.02e-25 104
MS.gene051492.t1 AT1G62300 56.164 73 32 0 84 156 300 372 3.23e-25 104
MS.gene051492.t1 AT1G68150 48.810 84 43 0 73 156 212 295 9.31e-25 101
MS.gene051492.t1 AT1G18860 53.165 79 35 1 78 156 223 299 2.72e-23 98.6
MS.gene051492.t1 AT5G15130 58.065 62 26 0 95 156 184 245 4.85e-23 97.8
MS.gene051492.t1 AT5G15130 58.065 62 26 0 95 156 226 287 4.91e-23 97.8
MS.gene051492.t1 AT4G31800 75.000 52 13 0 82 133 162 213 5.30e-23 94.4
MS.gene051492.t1 AT4G01720 45.000 100 51 2 61 156 200 299 2.71e-22 95.5
MS.gene051492.t1 AT1G69810 34.783 161 96 5 3 159 54 209 1.85e-21 91.7
MS.gene051492.t1 AT1G69810 33.962 159 98 4 12 166 119 274 2.05e-21 92.4
MS.gene051492.t1 AT2G04880 38.053 113 58 3 94 205 281 382 5.70e-20 89.0
MS.gene051492.t1 AT2G04880 42.857 63 34 2 94 156 109 169 4.80e-11 62.8
MS.gene051492.t1 AT2G04880 43.011 93 42 2 94 186 305 386 6.70e-20 88.6
MS.gene051492.t1 AT2G04880 42.857 63 34 2 94 156 109 169 5.61e-11 62.4
MS.gene051492.t1 AT2G38470 42.353 85 39 2 94 178 360 434 9.09e-19 85.5
MS.gene051492.t1 AT2G38470 40.506 79 37 3 86 156 166 242 7.71e-13 68.2
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 170 264 1.32e-18 84.3
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 170 264 1.32e-18 84.3
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 170 264 1.32e-18 84.3
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 170 264 1.32e-18 84.3
MS.gene051492.t1 AT5G56270 52.381 63 29 1 94 156 485 546 1.40e-18 85.1
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 274 368 2.11e-18 84.3
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 306 400 2.46e-18 84.3
MS.gene051492.t1 AT4G26640 42.708 96 49 2 66 156 346 440 2.58e-18 84.3
MS.gene051492.t1 AT3G04670 40.000 105 58 1 49 153 220 319 1.54e-17 80.9
MS.gene051492.t1 AT5G28650 51.667 60 29 0 94 153 260 319 3.10e-17 80.1
MS.gene051492.t1 AT1G64000 45.205 73 37 2 81 153 101 170 3.80e-17 77.4
MS.gene051492.t1 AT5G41570 41.000 100 49 4 54 153 65 154 4.09e-17 77.0
MS.gene051492.t1 AT1G29860 48.387 62 31 1 95 156 135 195 6.21e-17 78.6
MS.gene051492.t1 AT2G03340 47.143 70 36 1 87 156 406 474 1.09e-16 79.3
MS.gene051492.t1 AT2G03340 37.736 106 55 5 60 156 205 308 1.09e-14 73.6
MS.gene051492.t1 AT2G30590 50.000 60 30 0 94 153 311 370 1.45e-16 78.6
MS.gene051492.t1 AT5G13080 48.387 62 31 1 94 155 65 125 1.75e-16 74.3
MS.gene051492.t1 AT4G18170 45.161 62 33 1 95 156 171 231 2.23e-16 77.4
MS.gene051492.t1 AT1G13960 47.619 63 32 1 94 156 407 468 2.54e-16 78.2
MS.gene051492.t1 AT1G13960 43.210 81 35 4 76 156 218 287 1.10e-12 67.8
MS.gene051492.t1 AT1G13960 45.714 70 37 1 87 156 247 315 2.91e-16 77.4
MS.gene051492.t1 AT1G13960 43.210 81 35 4 76 156 65 134 1.33e-12 67.0
MS.gene051492.t1 AT2G47260 44.578 83 45 1 95 177 173 254 3.34e-16 77.0
MS.gene051492.t1 AT3G62340 39.796 98 53 2 91 183 113 209 3.63e-16 76.3
MS.gene051492.t1 AT3G01080 45.714 70 37 1 87 156 297 365 4.53e-16 77.4
MS.gene051492.t1 AT2G23320 49.153 59 30 0 97 155 241 299 4.67e-16 76.6
MS.gene051492.t1 AT3G01080 45.714 70 37 1 87 156 335 403 4.71e-16 77.4
MS.gene051492.t1 AT2G30250 40.698 86 48 2 71 156 305 387 6.19e-16 77.0
MS.gene051492.t1 AT2G30250 39.130 92 44 3 97 188 167 246 1.37e-11 64.3
MS.gene051492.t1 AT5G07100 42.029 69 39 1 94 162 139 206 1.87e-15 73.6
MS.gene051492.t1 AT5G07100 48.571 70 34 2 97 166 25 92 5.21e-13 66.6
MS.gene051492.t1 AT5G07100 42.029 69 39 1 94 162 139 206 1.87e-15 73.6
MS.gene051492.t1 AT5G07100 48.571 70 34 2 97 166 25 92 5.21e-13 66.6
MS.gene051492.t1 AT5G07100 42.029 69 39 1 94 162 139 206 1.87e-15 73.6
MS.gene051492.t1 AT5G07100 48.571 70 34 2 97 166 25 92 5.21e-13 66.6
MS.gene051492.t1 AT5G07100 42.029 69 39 1 94 162 139 206 1.87e-15 73.6
MS.gene051492.t1 AT5G07100 48.571 70 34 2 97 166 25 92 5.21e-13 66.6
MS.gene051492.t1 AT5G46350 43.548 62 34 1 95 156 182 242 2.48e-15 74.7
MS.gene051492.t1 AT5G07100 44.444 63 34 1 94 156 232 293 2.60e-15 74.3
MS.gene051492.t1 AT5G07100 48.571 70 34 2 97 166 118 185 1.19e-12 66.6
MS.gene051492.t1 AT2G24570 48.333 60 31 0 94 153 241 300 2.61e-15 74.3
MS.gene051492.t1 AT5G49520 46.774 62 32 1 95 156 220 280 2.77e-15 75.1
MS.gene051492.t1 AT4G31550 48.333 60 31 0 94 153 244 303 2.88e-15 74.3
MS.gene051492.t1 AT2G44745 43.478 69 38 1 94 162 143 210 2.92e-15 72.8
MS.gene051492.t1 AT4G31550 48.333 60 31 0 94 153 243 302 3.00e-15 74.3
MS.gene051492.t1 AT3G01970 46.377 69 34 2 94 160 63 130 3.21e-15 71.2
MS.gene051492.t1 AT4G24240 45.161 62 34 0 94 155 279 340 3.31e-15 74.3
MS.gene051492.t1 AT2G46130 39.560 91 46 3 63 153 5 86 3.90e-15 69.7
MS.gene051492.t1 AT5G26170 43.750 64 35 1 94 157 111 173 4.25e-15 71.6
MS.gene051492.t1 AT4G30935 46.032 63 33 1 94 156 329 390 5.35e-15 74.3
MS.gene051492.t1 AT2G37260 47.059 68 35 1 86 153 257 323 6.47e-15 73.6
MS.gene051492.t1 AT2G37260 44.444 72 36 3 86 157 75 142 1.57e-12 66.6
MS.gene051492.t1 AT2G37260 47.059 68 35 1 86 153 259 325 6.55e-15 73.6
MS.gene051492.t1 AT2G37260 44.444 72 36 3 86 157 77 144 1.60e-12 66.6
MS.gene051492.t1 AT2G37260 47.059 68 35 1 86 153 339 405 6.92e-15 73.9
MS.gene051492.t1 AT2G37260 47.541 61 30 2 97 157 166 224 1.59e-12 67.0
MS.gene051492.t1 AT1G55600 51.667 60 28 1 97 156 308 366 1.17e-14 73.6
MS.gene051492.t1 AT1G29280 46.667 60 32 0 97 156 75 134 1.70e-14 71.6
MS.gene051492.t1 AT1G69310 47.458 59 30 1 95 153 146 203 2.19e-14 71.6
MS.gene051492.t1 AT1G69310 47.458 59 30 1 95 153 146 203 2.19e-14 71.6
MS.gene051492.t1 AT1G69310 47.458 59 30 1 95 153 146 203 2.19e-14 71.6
MS.gene051492.t1 AT4G26440 38.596 114 57 4 66 171 336 444 7.74e-14 71.2
MS.gene051492.t1 AT4G26440 33.628 113 64 4 97 204 179 285 5.41e-11 62.8
MS.gene051492.t1 AT3G58710 37.634 93 58 0 67 159 41 133 8.72e-14 69.7
MS.gene051492.t1 AT3G58710 47.619 63 33 0 97 159 72 134 1.06e-13 69.3
MS.gene051492.t1 AT2G21900 38.462 78 47 1 80 157 93 169 1.35e-13 68.2
MS.gene051492.t1 AT4G39410 43.077 65 36 1 94 158 221 284 1.69e-13 69.3
MS.gene051492.t1 AT2G34830 43.939 66 37 0 93 158 212 277 1.77e-13 69.7
MS.gene051492.t1 AT2G34830 43.939 66 37 0 93 158 221 286 1.94e-13 69.7
MS.gene051492.t1 AT1G30650 45.312 64 35 0 93 156 214 277 3.96e-13 68.9
MS.gene051492.t1 AT5G43290 43.077 65 36 1 89 153 107 170 6.38e-13 67.4
MS.gene051492.t1 AT5G64810 41.667 60 34 1 94 153 108 166 7.08e-13 65.9
MS.gene051492.t1 AT4G01250 41.176 85 49 1 97 180 129 213 1.13e-12 66.6
MS.gene051492.t1 AT5G52830 46.667 60 32 0 97 156 166 225 2.97e-12 65.9
MS.gene051492.t1 AT4G23550 41.270 63 37 0 94 156 138 200 3.36e-12 65.5
MS.gene051492.t1 AT5G45050 45.000 60 33 0 97 156 1042 1101 9.67e-12 65.1
MS.gene051492.t1 AT5G45050 45.000 60 33 0 97 156 1181 1240 1.02e-11 65.1
MS.gene051492.t1 AT5G45050 45.000 60 33 0 97 156 1153 1212 1.05e-11 65.1
MS.gene051492.t1 AT2G46400 37.000 100 56 3 80 177 90 184 6.34e-11 61.6
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 7.04e-11 62.8
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 7.04e-11 62.8
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 7.45e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 7.66e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 7.66e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 8.13e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 8.21e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 8.29e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 392 493 8.41e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 8.84e-11 62.4
MS.gene051492.t1 AT4G12020 31.731 104 69 2 87 190 459 560 8.93e-11 62.4

Find 45 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTTCAAATCATCAAAT+TGG 0.204407 1.3:+7986088 MS.gene051492:CDS
CATACCAAACTTTCATCATT+AGG 0.285634 1.3:-7986199 None:intergenic
GATGGTTTAAATGACTCATT+AGG 0.290756 1.3:-7986826 None:intergenic
TTAGAGATTGATGAACCTTT+AGG 0.306541 1.3:-7986859 None:intergenic
CTTCTCCTAGAGCTTACTTT+AGG 0.314347 1.3:+7986523 MS.gene051492:CDS
TGAAGTCAGGATCTTTGATT+AGG 0.319072 1.3:-7986999 None:intergenic
AAATCTCGATTTGAATCTTT+CGG 0.326816 1.3:+7987086 MS.gene051492:CDS
CTCACAAAGTCTAGTATTTG+TGG 0.333230 1.3:-7986917 None:intergenic
CCTTGTTGATCTCTTGAAGA+TGG 0.350551 1.3:-7986051 None:intergenic
TCAACCTAATGATGAAAGTT+TGG 0.350703 1.3:+7986195 MS.gene051492:CDS
GGCTATCAATGGAGGAAGTA+TGG 0.366288 1.3:+7986477 MS.gene051492:CDS
TCTAGGAGAAGCATTGTCTT+TGG 0.371896 1.3:-7986511 None:intergenic
TCTTTGTCATTCAATGTTGT+TGG 0.386703 1.3:-7986892 None:intergenic
CTTGTTGATCTCTTGAAGAT+GGG 0.396728 1.3:-7986050 None:intergenic
AGCTGTTATAATGGATGAAA+AGG 0.418939 1.3:+7985762 None:intergenic
GAAGTCAGGATCTTTGATTA+GGG 0.432423 1.3:-7986998 None:intergenic
CAAGTTCAAATCATCAAATT+GGG 0.453217 1.3:+7986089 MS.gene051492:CDS
ATCCTTGTTGCAACATATGA+TGG 0.459740 1.3:+7986784 MS.gene051492:CDS
GCTAATGCTGCAGTGAAGTC+AGG 0.465446 1.3:-7987012 None:intergenic
ATGGTTTAAATGACTCATTA+GGG 0.465681 1.3:-7986825 None:intergenic
ATGGAGGAAGTATGGTCAAA+AGG 0.476669 1.3:+7986485 MS.gene051492:CDS
TGCTGGGCAACTAGGAGCCA+TGG 0.478382 1.3:-7986550 None:intergenic
CCATCTTCATCCACACCTAA+AGG 0.490427 1.3:+7986844 MS.gene051492:CDS
AATATATAGATAATAAAAGA+TGG 0.494453 1.3:+7986456 MS.gene051492:intron
AGAGTTACAACAAGTGAAAG+AGG 0.509069 1.3:+7985967 MS.gene051492:CDS
AGCTTACTTTAGGTGCTCCA+TGG 0.512350 1.3:+7986533 MS.gene051492:CDS
GAGAATGTCATGCAACAGTT+TGG 0.514761 1.3:+7986937 MS.gene051492:CDS
CTTATGTTCTTGATCAGTGA+CGG 0.524464 1.3:-7987052 None:intergenic
GTCATGCAACAGTTTGGCTA+TGG 0.529941 1.3:+7986943 MS.gene051492:CDS
TAATAAAAGATGGCTATCAA+TGG 0.531094 1.3:+7986466 MS.gene051492:CDS
CCTTTAGGTGTGGATGAAGA+TGG 0.531585 1.3:-7986844 None:intergenic
TCAACAAGGAAGGACACAAA+GGG 0.547154 1.3:+7986065 MS.gene051492:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.566462 1.3:-7986528 None:intergenic
GTTCGTACAAAGACTTGTAG+TGG 0.571338 1.3:-7986172 None:intergenic
TGCAACAGTTTGGCTATGGA+AGG 0.583957 1.3:+7986947 MS.gene051492:CDS
CTCCATCATATGTTGCAACA+AGG 0.587646 1.3:-7986786 None:intergenic
ATCAACAAGGAAGGACACAA+AGG 0.597349 1.3:+7986064 MS.gene051492:CDS
CTTCAAGAGATCAACAAGGA+AGG 0.612726 1.3:+7986055 MS.gene051492:CDS
TCTCGATTTGAATCTTTCGG+AGG 0.620338 1.3:+7987089 MS.gene051492:CDS
TAAAAGATGGCTATCAATGG+AGG 0.624488 1.3:+7986469 MS.gene051492:CDS
GATTGATGAACCTTTAGGTG+TGG 0.626271 1.3:-7986854 None:intergenic
ATGACTCATTAGGGACACCA+TGG 0.648715 1.3:-7986816 None:intergenic
TATGATGGAGAGCACAACCA+TGG 0.692151 1.3:+7986799 MS.gene051492:CDS
CCATCTTCAAGAGATCAACA+AGG 0.701780 1.3:+7986051 MS.gene051492:CDS
GATCAAGAACATAAGCGACA+AGG 0.725331 1.3:+7987060 MS.gene051492:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGATAATAAAAGA+TGG + chr1.3:7986456-7986475 MS.gene051492:intron 10.0%
!! AATTTCAGAAGAAATAAATT+TGG + chr1.3:7986392-7986411 MS.gene051492:intron 15.0%
!! ATTATTCTATGAAAATATTG+TGG + chr1.3:7986694-7986713 MS.gene051492:intron 15.0%
!! TAAAGTTAATAAATGAAGTA+AGG - chr1.3:7986736-7986755 None:intergenic 15.0%
!! TATGTATATGATTTATAGAA+AGG + chr1.3:7986639-7986658 MS.gene051492:intron 15.0%
!! TTACTTCATTTATTAACTTT+AGG + chr1.3:7986735-7986754 MS.gene051492:intron 15.0%
!! GGTTTCTTATTATACTTAAT+AGG + chr1.3:7985797-7985816 MS.gene051492:intron 20.0%
!!! ATCTTCTAATTTTGCTTTTT+AGG + chr1.3:7985866-7985885 MS.gene051492:intron 20.0%
!!! TTAACAATTTTGATGTGTTA+AGG + chr1.3:7985928-7985947 MS.gene051492:intron 20.0%
! AAGGTTACAAGGTTATTATA+TGG + chr1.3:7986658-7986677 MS.gene051492:intron 25.0%
! ACAAGTTCAAATCATCAAAT+TGG + chr1.3:7986088-7986107 MS.gene051492:CDS 25.0%
! ATGAAAAGGTAACTAATTAG+TGG + chr1.3:7985776-7985795 MS.gene051492:intron 25.0%
! ATGGTTTAAATGACTCATTA+GGG - chr1.3:7986828-7986847 None:intergenic 25.0%
! CAAGTTCAAATCATCAAATT+GGG + chr1.3:7986089-7986108 MS.gene051492:CDS 25.0%
! TAATAAAAGATGGCTATCAA+TGG + chr1.3:7986466-7986485 MS.gene051492:CDS 25.0%
! TACAAAAATGCATACATGAT+AGG + chr1.3:7986758-7986777 MS.gene051492:CDS 25.0%
! TGATTTATAGAAAGGTTACA+AGG + chr1.3:7986647-7986666 MS.gene051492:intron 25.0%
!! AAATCTCGATTTGAATCTTT+CGG + chr1.3:7987086-7987105 MS.gene051492:CDS 25.0%
!! AATGAGTGATATGATTTTAG+TGG - chr1.3:7986296-7986315 None:intergenic 25.0%
!! TCTGAAATTTATGTCTAGAA+AGG - chr1.3:7986381-7986400 None:intergenic 25.0%
CATACCAAACTTTCATCATT+AGG - chr1.3:7986202-7986221 None:intergenic 30.0%
GATGGTTTAAATGACTCATT+AGG - chr1.3:7986829-7986848 None:intergenic 30.0%
TCAACCTAATGATGAAAGTT+TGG + chr1.3:7986195-7986214 MS.gene051492:CDS 30.0%
TCTTTGTCATTCAATGTTGT+TGG - chr1.3:7986895-7986914 None:intergenic 30.0%
TTAGAGATTGATGAACCTTT+AGG - chr1.3:7986862-7986881 None:intergenic 30.0%
! CTTTTGCTTGAATCAATGTT+AGG - chr1.3:7986121-7986140 None:intergenic 30.0%
!! ACAATTTTGATGTGTTAAGG+TGG + chr1.3:7985931-7985950 MS.gene051492:intron 30.0%
!!! CATATACCTTCTTTTTTGCT+GGG - chr1.3:7986569-7986588 None:intergenic 30.0%
AGAGTTACAACAAGTGAAAG+AGG + chr1.3:7985967-7985986 MS.gene051492:CDS 35.0%
ATCCTTGTTGCAACATATGA+TGG + chr1.3:7986784-7986803 MS.gene051492:CDS 35.0%
CTCACAAAGTCTAGTATTTG+TGG - chr1.3:7986920-7986939 None:intergenic 35.0%
CTTATGTTCTTGATCAGTGA+CGG - chr1.3:7987055-7987074 None:intergenic 35.0%
CTTGTTGATCTCTTGAAGAT+GGG - chr1.3:7986053-7986072 None:intergenic 35.0%
GAAGTCAGGATCTTTGATTA+GGG - chr1.3:7987001-7987020 None:intergenic 35.0%
TAAAAGATGGCTATCAATGG+AGG + chr1.3:7986469-7986488 MS.gene051492:CDS 35.0%
TGAAGTCAGGATCTTTGATT+AGG - chr1.3:7987002-7987021 None:intergenic 35.0%
!!! GCATATACCTTCTTTTTTGC+TGG - chr1.3:7986570-7986589 None:intergenic 35.0%
ATCAACAAGGAAGGACACAA+AGG + chr1.3:7986064-7986083 MS.gene051492:CDS 40.0%
CCATCTTCAAGAGATCAACA+AGG + chr1.3:7986051-7986070 MS.gene051492:CDS 40.0%
CCTTGTTGATCTCTTGAAGA+TGG - chr1.3:7986054-7986073 None:intergenic 40.0%
CTCCATCATATGTTGCAACA+AGG - chr1.3:7986789-7986808 None:intergenic 40.0%
CTTCAAGAGATCAACAAGGA+AGG + chr1.3:7986055-7986074 MS.gene051492:CDS 40.0%
CTTCTCCTAGAGCTTACTTT+AGG + chr1.3:7986523-7986542 MS.gene051492:CDS 40.0%
GAGAATGTCATGCAACAGTT+TGG + chr1.3:7986937-7986956 MS.gene051492:CDS 40.0%
GATCAAGAACATAAGCGACA+AGG + chr1.3:7987060-7987079 MS.gene051492:CDS 40.0%
GATTGATGAACCTTTAGGTG+TGG - chr1.3:7986857-7986876 None:intergenic 40.0%
GTTCGTACAAAGACTTGTAG+TGG - chr1.3:7986175-7986194 None:intergenic 40.0%
TAGTTGCCCAGCAAAAAAGA+AGG + chr1.3:7986560-7986579 MS.gene051492:CDS 40.0%
TCAACAAGGAAGGACACAAA+GGG + chr1.3:7986065-7986084 MS.gene051492:CDS 40.0%
! ATGGAGGAAGTATGGTCAAA+AGG + chr1.3:7986485-7986504 MS.gene051492:CDS 40.0%
! TCTCGATTTGAATCTTTCGG+AGG + chr1.3:7987089-7987108 MS.gene051492:CDS 40.0%
!! TCTAGGAGAAGCATTGTCTT+TGG - chr1.3:7986514-7986533 None:intergenic 40.0%
!!! TTCTTTTTTGCTGGGCAACT+AGG - chr1.3:7986561-7986580 None:intergenic 40.0%
AGCTTACTTTAGGTGCTCCA+TGG + chr1.3:7986533-7986552 MS.gene051492:CDS 45.0%
ATGACTCATTAGGGACACCA+TGG - chr1.3:7986819-7986838 None:intergenic 45.0%
CCATCTTCATCCACACCTAA+AGG + chr1.3:7986844-7986863 MS.gene051492:CDS 45.0%
CCTTTAGGTGTGGATGAAGA+TGG - chr1.3:7986847-7986866 None:intergenic 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1.3:7986531-7986550 None:intergenic 45.0%
GGCTATCAATGGAGGAAGTA+TGG + chr1.3:7986477-7986496 MS.gene051492:CDS 45.0%
GTCATGCAACAGTTTGGCTA+TGG + chr1.3:7986943-7986962 MS.gene051492:CDS 45.0%
TGCAACAGTTTGGCTATGGA+AGG + chr1.3:7986947-7986966 MS.gene051492:CDS 45.0%
! TATGATGGAGAGCACAACCA+TGG + chr1.3:7986799-7986818 MS.gene051492:CDS 45.0%
! TGTAGTGGCTTTTGTGCTGT+GGG - chr1.3:7986160-7986179 None:intergenic 45.0%
! TTGTAGTGGCTTTTGTGCTG+TGG - chr1.3:7986161-7986180 None:intergenic 45.0%
!! TAAAAAAAAAAATTAAAACA+TGG - chr1.3:7985841-7985860 None:intergenic 5.0%
GCTAATGCTGCAGTGAAGTC+AGG - chr1.3:7987015-7987034 None:intergenic 50.0%
TGCTGGGCAACTAGGAGCCA+TGG - chr1.3:7986553-7986572 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 7985772 7987116 7985772 ID=MS.gene051492
chr1.3 mRNA 7985772 7987116 7985772 ID=MS.gene051492.t1;Parent=MS.gene051492
chr1.3 exon 7985772 7985783 7985772 ID=MS.gene051492.t1.exon1;Parent=MS.gene051492.t1
chr1.3 CDS 7985772 7985783 7985772 ID=cds.MS.gene051492.t1;Parent=MS.gene051492.t1
chr1.3 exon 7985950 7986216 7985950 ID=MS.gene051492.t1.exon2;Parent=MS.gene051492.t1
chr1.3 CDS 7985950 7986216 7985950 ID=cds.MS.gene051492.t1;Parent=MS.gene051492.t1
chr1.3 exon 7986465 7986581 7986465 ID=MS.gene051492.t1.exon3;Parent=MS.gene051492.t1
chr1.3 CDS 7986465 7986581 7986465 ID=cds.MS.gene051492.t1;Parent=MS.gene051492.t1
chr1.3 exon 7986757 7987116 7986757 ID=MS.gene051492.t1.exon4;Parent=MS.gene051492.t1
chr1.3 CDS 7986757 7987116 7986757 ID=cds.MS.gene051492.t1;Parent=MS.gene051492.t1
Gene Sequence

>MS.gene051492

ATGGATGAAAAGGTAACTAATTAGTGGTTTCTTATTATACTTAATAGGAACATCTCATTCTAATGACCATGTTTTAATTTTTTTTTTTAATTACATCTTCTAATTTTGCTTTTTAGGAACACATGCATGCAACTAATTCTAAAAGCTCATAATTAATTAACAATTTTGATGTGTTAAGGTGGAAACTCTTGAATTAGAGTTACAACAAGTGAAAGAGGAAAACAATACTCTAAGATTCATGCTTGAAGTTATGAATATCAAGTGTACAAAGCTTGAGTCCCATCTTCAAGAGATCAACAAGGAAGGACACAAAGGGACAAGTTCAAATCATCAAATTGGGTCAATACCTAACATTGATTCAAGCAAAAGAGCAAGACTAGAGATTCCCACAGCACAAAAGCCACTACAAGTCTTTGTACGAACTCAACCTAATGATGAAAGTTTGGTATGCTTCATTATCACTAATTTGTTGTGCATCAAATTAATTAATTAATCTCAATTTATCACAAAATTTGAGCAAACCACTAAAATCATATCACTCATTGATAAAAAAAAAATATATAATCAATTAATTGTTGATATTTTAATACACTGCTAGAAAACTGACCTTTCTAGACATAAATTTCAGAAGAAATAAATTTGGTCTCAAAGTACATTTTTTAATATCTATTATTGATTTTTTTTAATATATAGATAATAAAAGATGGCTATCAATGGAGGAAGTATGGTCAAAAGGTTACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCAGCAAAAAAGAAGGTATATGCTCTATATATAAAAATATTGTAAATTCATTTATTACATAATTCATGTGAATATGTATATGATTTATAGAAAGGTTACAAGGTTATTATATGGTGTGTTTTTATGAATTATTCTATGAAAATATTGTGGTTTAAAGAGATTCTAACCTTACTTCATTTATTAACTTTAGGTACAAAAATGCATACATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAGCACAACCATGGTGTCCCTAATGAGTCATTTAAACCATCTTCATCCACACCTAAAGGTTCATCAATCTCTAATAATAAATTACCAACAACATTGAATGACAAAGAAGCCACAAATACTAGACTTTGTGAGAATGTCATGCAACAGTTTGGCTATGGAAGGCACATTAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCGAACCGTCACTGATCAAGAACATAAGCGACAAGGTCTAAATCTCGATTTGAATCTTTCGGAGGAGTGA

Protein sequence

>MS.gene051492.t1

MDEKVETLELELQQVKEENNTLRFMLEVMNIKCTKLESHLQEINKEGHKGTSSNHQIGSIPNIDSSKRARLEIPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIHDRSILVATYDGEHNHGVPNESFKPSSSTPKGSSISNNKLPTTLNDKEATNTRLCENVMQQFGYGRHIKIEEYASSLIKDPDFTAALAEAVARTVTDQEHKRQGLNLDLNLSEE