Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41635.t1 | XP_003602739.1 | 98.6 | 210 | 3 | 0 | 4 | 213 | 58 | 267 | 2.70E-124 | 454.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41635.t1 | Q9FI46 | 76.2 | 210 | 50 | 0 | 4 | 213 | 60 | 269 | 2.8e-98 | 359.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41635.t1 | G7J389 | 98.6 | 210 | 3 | 0 | 4 | 213 | 58 | 267 | 1.9e-124 | 454.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene41635 | -0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene41635 | -0.803542 | 3.32E-49 | -1.69E-46 |
| MS.gene054413 | MS.gene41635 | -0.809293 | 2.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41635.t1 | MTR_3g098510 | 98.571 | 210 | 3 | 0 | 4 | 213 | 58 | 267 | 8.62e-159 | 439 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41635.t1 | AT5G51020 | 76.190 | 210 | 50 | 0 | 4 | 213 | 60 | 269 | 7.49e-125 | 354 |
Find 68 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAACTATTTCAATATT+AGG | 0.173231 | 3.4:+88364874 | MS.gene41635:CDS |
| ACATCACATTTCAACTCTTT+TGG | 0.197133 | 3.4:-88365362 | None:intergenic |
| CTGAAAATTACCCATGAATT+AGG | 0.256321 | 3.4:-88367425 | None:intergenic |
| CTAATATTGAAATAGTTATC+AGG | 0.268130 | 3.4:-88364873 | None:intergenic |
| CTATCCATGGGTGGTGGAGG+GGG | 0.279858 | 3.4:-88367823 | None:intergenic |
| CTTACCCCAATGACTTCTTC+TGG | 0.312832 | 3.4:-88366160 | None:intergenic |
| CCGGAGGATTTCCTAATTCA+TGG | 0.335715 | 3.4:+88367414 | MS.gene41635:CDS |
| GGTTGTGGGCGCTGATCCTT+TGG | 0.340420 | 3.4:-88366139 | None:intergenic |
| TCTATCCATGGGTGGTGGAG+GGG | 0.351946 | 3.4:-88367824 | None:intergenic |
| CTTCTATCCATGGGTGGTGG+AGG | 0.377445 | 3.4:-88367826 | None:intergenic |
| CAATGACTTCTTCTGGTTGT+GGG | 0.400932 | 3.4:-88366153 | None:intergenic |
| CGAAAATGTATCATTAAAAC+AGG | 0.408347 | 3.4:-88367788 | None:intergenic |
| CCAATGACTTCTTCTGGTTG+TGG | 0.410970 | 3.4:-88366154 | None:intergenic |
| GTCTCTGGAAGCTTGGTCCT+TGG | 0.416809 | 3.4:-88364850 | None:intergenic |
| TTCTATCCATGGGTGGTGGA+GGG | 0.418781 | 3.4:-88367825 | None:intergenic |
| TATCCATGGGTGGTGGAGGG+GGG | 0.424893 | 3.4:-88367822 | None:intergenic |
| TGAGATACACACCTGGGATC+GGG | 0.428241 | 3.4:+88367571 | MS.gene41635:CDS |
| CACAACCAGAAGAAGTCATT+GGG | 0.431463 | 3.4:+88366155 | MS.gene41635:CDS |
| CCAGCTGCTGAGCTAGTTGA+TGG | 0.433217 | 3.4:+88365003 | MS.gene41635:CDS |
| GAAATAGTTATCAGGGTCTC+TGG | 0.446405 | 3.4:-88364865 | None:intergenic |
| GTATTCCTCCATGTCTCTGA+TGG | 0.450638 | 3.4:-88366098 | None:intergenic |
| CCACAACCAGAAGAAGTCAT+TGG | 0.455535 | 3.4:+88366154 | MS.gene41635:CDS |
| CCCTCTATTCTTCTATCCAT+GGG | 0.464009 | 3.4:-88367835 | None:intergenic |
| ACCCTCTATTCTTCTATCCA+TGG | 0.474620 | 3.4:-88367836 | None:intergenic |
| ACCCATGGATAGAAGAATAG+AGG | 0.476052 | 3.4:+88367834 | MS.gene41635:CDS |
| TACTGTGATTTGCAGGACAT+TGG | 0.482742 | 3.4:+88367317 | MS.gene41635:intron |
| TCCACAGAAACCCTTTCGCC+AGG | 0.496903 | 3.4:+88365166 | MS.gene41635:CDS |
| CCATGAATTAGGAAATCCTC+CGG | 0.499492 | 3.4:-88367414 | None:intergenic |
| TGCTGACCTGCTCATAATAT+AGG | 0.501685 | 3.4:-88365035 | None:intergenic |
| TTAAAACAGGAGGTCGGTGC+AGG | 0.502222 | 3.4:-88367775 | None:intergenic |
| TATCAGGGTCTCTGGAAGCT+TGG | 0.509159 | 3.4:-88364857 | None:intergenic |
| ATGAGATACACACCTGGGAT+CGG | 0.518865 | 3.4:+88367570 | MS.gene41635:CDS |
| CGGAGGATTTCCTAATTCAT+GGG | 0.524055 | 3.4:+88367415 | MS.gene41635:CDS |
| ATTCTTCTATCCATGGGTGG+TGG | 0.536104 | 3.4:-88367829 | None:intergenic |
| AGTCTACCAACCTGGCGAAA+GGG | 0.540376 | 3.4:-88365176 | None:intergenic |
| ATTAGGAAATCCTCCGGGTG+GGG | 0.554095 | 3.4:-88367408 | None:intergenic |
| GATCGGGGTTATGATGATGA+TGG | 0.554509 | 3.4:+88367587 | MS.gene41635:CDS |
| CATCTCAAGCGTTGTTCACG+TGG | 0.558775 | 3.4:+88367359 | MS.gene41635:CDS |
| ATCATCATAACCCCGATCCC+AGG | 0.559871 | 3.4:-88367582 | None:intergenic |
| AAATGTCCTATATTATGAGC+AGG | 0.561090 | 3.4:+88365029 | MS.gene41635:CDS |
| TAATATTGAAATAGTTATCA+GGG | 0.562932 | 3.4:-88364872 | None:intergenic |
| TAGTCTACCAACCTGGCGAA+AGG | 0.563451 | 3.4:-88365177 | None:intergenic |
| CCATCAACTAGCTCAGCAGC+TGG | 0.564068 | 3.4:-88365003 | None:intergenic |
| CCTATTCAATTGCAGGTTTG+GGG | 0.568547 | 3.4:+88367724 | MS.gene41635:intron |
| ACCTGGCGAAAGGGTTTCTG+TGG | 0.572687 | 3.4:-88365167 | None:intergenic |
| CATGGATATGCAGTATTCCA+AGG | 0.578376 | 3.4:+88364833 | None:intergenic |
| CTTGGAATACTGCATATCCA+TGG | 0.580526 | 3.4:-88364832 | None:intergenic |
| GGTGCAGGCTTGAACTCGTA+AGG | 0.581581 | 3.4:-88367760 | None:intergenic |
| GGAAAACGCTGCTTATATGA+AGG | 0.583887 | 3.4:+88367380 | MS.gene41635:CDS |
| TATGAAGGTTCAACCCCACC+CGG | 0.591979 | 3.4:+88367395 | MS.gene41635:CDS |
| TACATATGCCATCAGAGACA+TGG | 0.594000 | 3.4:+88366090 | MS.gene41635:CDS |
| GAGATACACACCTGGGATCG+GGG | 0.595929 | 3.4:+88367572 | MS.gene41635:CDS |
| CTACTGTACTTCAGAACTTG+CGG | 0.598735 | 3.4:+88367535 | MS.gene41635:CDS |
| AATTAGGAAATCCTCCGGGT+GGG | 0.600949 | 3.4:-88367409 | None:intergenic |
| CCCATGGATAGAAGAATAGA+GGG | 0.605217 | 3.4:+88367835 | MS.gene41635:CDS |
| TCTATTCTTCTATCCATGGG+TGG | 0.613129 | 3.4:-88367832 | None:intergenic |
| CGCAAGTTCTGAAGTACAGT+AGG | 0.615332 | 3.4:-88367534 | None:intergenic |
| AAATTTCTGTGATCGGCCAA+AGG | 0.621478 | 3.4:+88366123 | MS.gene41635:CDS |
| AAATGTATCATTAAAACAGG+AGG | 0.650601 | 3.4:-88367785 | None:intergenic |
| GTATCATTAAAACAGGAGGT+CGG | 0.664509 | 3.4:-88367781 | None:intergenic |
| GAATTAGGAAATCCTCCGGG+TGG | 0.668022 | 3.4:-88367410 | None:intergenic |
| CATGAATTAGGAAATCCTCC+GGG | 0.668389 | 3.4:-88367413 | None:intergenic |
| AGAGTTGAAATGTGATGTTG+AGG | 0.695193 | 3.4:+88365367 | MS.gene41635:CDS |
| AGAACAATGAGATACACACC+TGG | 0.699199 | 3.4:+88367564 | MS.gene41635:CDS |
| GAACAATGAGATACACACCT+GGG | 0.705723 | 3.4:+88367565 | MS.gene41635:CDS |
| ATATGCCATCAGAGACATGG+AGG | 0.729438 | 3.4:+88366093 | MS.gene41635:CDS |
| GAAGGTTCAACCCCACCCGG+AGG | 0.739658 | 3.4:+88367398 | MS.gene41635:CDS |
| ACAACCAGAAGAAGTCATTG+GGG | 0.750751 | 3.4:+88366156 | MS.gene41635:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTAATAATATTTAAATCT+TGG | - | chr3.4:88365936-88365955 | None:intergenic | 10.0% |
| !!! | AAATAATTTTACAATAAAGT+AGG | + | chr3.4:88366366-88366385 | MS.gene41635:intron | 10.0% |
| !!! | AATAATTTTACAATAAAGTA+GGG | + | chr3.4:88366367-88366386 | MS.gene41635:intron | 10.0% |
| !! | TAATATTGAAATAGTTATCA+GGG | - | chr3.4:88364875-88364894 | None:intergenic | 15.0% |
| !! | TTAAAAGTTATTCTCATATT+TGG | + | chr3.4:88365793-88365812 | MS.gene41635:intron | 15.0% |
| !!! | TTCTTCTGAAAATTTTTATT+TGG | + | chr3.4:88365208-88365227 | MS.gene41635:intron | 15.0% |
| !!! | TTTTTTATAGAAAACTATTC+TGG | - | chr3.4:88367061-88367080 | None:intergenic | 15.0% |
| !! | AATACAAAAATTTCTGTGAT+CGG | + | chr3.4:88366116-88366135 | MS.gene41635:CDS | 20.0% |
| !! | CTAATATTGAAATAGTTATC+AGG | - | chr3.4:88364876-88364895 | None:intergenic | 20.0% |
| !! | CTGATAACTATTTCAATATT+AGG | + | chr3.4:88364874-88364893 | MS.gene41635:CDS | 20.0% |
| !! | TCAATGTAAATAAAATTCGT+TGG | + | chr3.4:88366287-88366306 | MS.gene41635:intron | 20.0% |
| !! | TTCTTTATCTATAGTTTCTT+AGG | + | chr3.4:88367194-88367213 | MS.gene41635:intron | 20.0% |
| !!! | ATTTAAAACCTAGACAATAA+AGG | + | chr3.4:88367680-88367699 | MS.gene41635:intron | 20.0% |
| !!! | GTTTTCTATAAAAAATTCCA+TGG | + | chr3.4:88367066-88367085 | MS.gene41635:intron | 20.0% |
| !!! | TCTAGGTTTTAAATTTATGA+AGG | - | chr3.4:88367674-88367693 | None:intergenic | 20.0% |
| ! | AAATGTATCATTAAAACAGG+AGG | - | chr3.4:88367788-88367807 | None:intergenic | 25.0% |
| ! | AAGAATTGATGAGAGAAAAT+GGG | + | chr3.4:88366902-88366921 | MS.gene41635:intron | 25.0% |
| ! | AAGTAGAATTATTAGAGTGT+TGG | - | chr3.4:88364911-88364930 | None:intergenic | 25.0% |
| ! | ACCTTCATATACAAAATTCT+GGG | - | chr3.4:88366687-88366706 | None:intergenic | 25.0% |
| ! | ATCCAAAATTTCAACATTAG+AGG | - | chr3.4:88365479-88365498 | None:intergenic | 25.0% |
| ! | CGAAAATGTATCATTAAAAC+AGG | - | chr3.4:88367791-88367810 | None:intergenic | 25.0% |
| ! | TAATATTTAAATCTTGGGCA+TGG | - | chr3.4:88365930-88365949 | None:intergenic | 25.0% |
| !! | AAGTTTTTCTTTATGATGCT+AGG | + | chr3.4:88365130-88365149 | MS.gene41635:intron | 25.0% |
| !! | ACTTGTTCTTGTATTTCTAT+AGG | + | chr3.4:88365982-88366001 | MS.gene41635:intron | 25.0% |
| !! | ATCCTCTAATGTTGAAATTT+TGG | + | chr3.4:88365474-88365493 | MS.gene41635:intron | 25.0% |
| !! | CTTGATTGAGCTAATTTTAA+AGG | - | chr3.4:88365113-88365132 | None:intergenic | 25.0% |
| !! | CTTGTTCTTGTATTTCTATA+GGG | + | chr3.4:88365983-88366002 | MS.gene41635:intron | 25.0% |
| !! | GATTTTCTATCAATCTTGTA+AGG | + | chr3.4:88366961-88366980 | MS.gene41635:intron | 25.0% |
| !!! | ACAGTTGTCATTTTTTTGTT+AGG | + | chr3.4:88366242-88366261 | MS.gene41635:intron | 25.0% |
| !!! | ATTAGAGGATTTATTTTCCT+GGG | - | chr3.4:88365464-88365483 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCTATTCAATTGC+AGG | + | chr3.4:88367717-88367736 | MS.gene41635:intron | 25.0% |
| !!! | CAGTTGTCATTTTTTTGTTA+GGG | + | chr3.4:88366243-88366262 | MS.gene41635:intron | 25.0% |
| !!! | CTTCTATCTTTTAGTTGAAA+TGG | + | chr3.4:88366814-88366833 | MS.gene41635:intron | 25.0% |
| !!! | GTTTTAAATTTATGAAGGTG+AGG | - | chr3.4:88367669-88367688 | None:intergenic | 25.0% |
| !!! | TCAGTTTGTTATTTGTGTTT+TGG | + | chr3.4:88365868-88365887 | MS.gene41635:intron | 25.0% |
| !!! | TTTGAGATGAACTTTTCAAT+AGG | + | chr3.4:88367004-88367023 | MS.gene41635:intron | 25.0% |
| AAAAGTGACAATTGATACCA+AGG | - | chr3.4:88366618-88366637 | None:intergenic | 30.0% | |
| AAATGTCCTATATTATGAGC+AGG | + | chr3.4:88365029-88365048 | MS.gene41635:CDS | 30.0% | |
| AACAAGTATCCCTATAATGT+AGG | - | chr3.4:88365969-88365988 | None:intergenic | 30.0% | |
| AAGGAAGATCAACTACTAAA+AGG | - | chr3.4:88367291-88367310 | None:intergenic | 30.0% | |
| AAGTAGGGTATAAAGAAGTA+TGG | + | chr3.4:88366382-88366401 | MS.gene41635:intron | 30.0% | |
| ACAAGTATCCCTATAATGTA+GGG | - | chr3.4:88365968-88365987 | None:intergenic | 30.0% | |
| ACATTCTATCTTCCAACTTT+AGG | + | chr3.4:88365418-88365437 | MS.gene41635:intron | 30.0% | |
| ACTTATCCAATACTTGAACA+AGG | + | chr3.4:88367252-88367271 | MS.gene41635:intron | 30.0% | |
| AGAATTGATGAGAGAAAATG+GGG | + | chr3.4:88366903-88366922 | MS.gene41635:intron | 30.0% | |
| AGTTTACGTCTTTAATGACT+TGG | + | chr3.4:88367117-88367136 | MS.gene41635:intron | 30.0% | |
| ATAATGATAAACTCCCTCTA+TGG | - | chr3.4:88365686-88365705 | None:intergenic | 30.0% | |
| ATATATATAGTCTACCAACC+TGG | - | chr3.4:88365187-88365206 | None:intergenic | 30.0% | |
| ATGTCAAAATAATTGTGTCG+AGG | + | chr3.4:88366310-88366329 | MS.gene41635:intron | 30.0% | |
| CACCTTCATATACAAAATTC+TGG | - | chr3.4:88366688-88366707 | None:intergenic | 30.0% | |
| CGAAGAAAGTAAAGAAAAAC+AGG | + | chr3.4:88366338-88366357 | MS.gene41635:intron | 30.0% | |
| CTGAAAATTACCCATGAATT+AGG | - | chr3.4:88367428-88367447 | None:intergenic | 30.0% | |
| CTTAGAATTAAGTCCTAGAA+TGG | - | chr3.4:88365658-88365677 | None:intergenic | 30.0% | |
| GAAAAGTTCATCTCAAACTA+TGG | - | chr3.4:88367001-88367020 | None:intergenic | 30.0% | |
| GAAGAATTGATGAGAGAAAA+TGG | + | chr3.4:88366901-88366920 | MS.gene41635:intron | 30.0% | |
| GTATTACCTTGTTCAAGTAT+TGG | - | chr3.4:88367261-88367280 | None:intergenic | 30.0% | |
| TAAGTTCACCTTTATTGTCT+AGG | - | chr3.4:88367691-88367710 | None:intergenic | 30.0% | |
| TAATGATAAACTCCCTCTAT+GGG | - | chr3.4:88365685-88365704 | None:intergenic | 30.0% | |
| TATACAAAATTCTGGGTGAA+AGG | - | chr3.4:88366680-88366699 | None:intergenic | 30.0% | |
| TCAACTACTAAAAGGAATAG+AGG | - | chr3.4:88367283-88367302 | None:intergenic | 30.0% | |
| TGATACTGGTACAAAAATGA+GGG | - | chr3.4:88367471-88367490 | None:intergenic | 30.0% | |
| TGTATATGAAGGTGATGATA+TGG | + | chr3.4:88366694-88366713 | MS.gene41635:intron | 30.0% | |
| TGTCTAAAAAAGAAGATTCC+TGG | - | chr3.4:88366225-88366244 | None:intergenic | 30.0% | |
| ! | ACATCACATTTCAACTCTTT+TGG | - | chr3.4:88365365-88365384 | None:intergenic | 30.0% |
| ! | ACCCAGAATTTTGTATATGA+AGG | + | chr3.4:88366683-88366702 | MS.gene41635:intron | 30.0% |
| ! | CACTTCTTCTAAAAACAGAA+TGG | + | chr3.4:88367506-88367525 | MS.gene41635:intron | 30.0% |
| !! | ATCATTATTTTTCCGTCGAA+TGG | + | chr3.4:88365698-88365717 | MS.gene41635:intron | 30.0% |
| !! | ATGTGAAATTTTAACACGAG+AGG | + | chr3.4:88365630-88365649 | MS.gene41635:intron | 30.0% |
| !! | CATTAGAGGATTTATTTTCC+TGG | - | chr3.4:88365465-88365484 | None:intergenic | 30.0% |
| !! | GAATTATTAGAGTGTTGGAA+AGG | - | chr3.4:88364906-88364925 | None:intergenic | 30.0% |
| !! | TTCAAGTATTGGATAAGTCA+AGG | - | chr3.4:88367250-88367269 | None:intergenic | 30.0% |
| !!! | ATTTTTTTGTTAGGGAGAAG+TGG | + | chr3.4:88366251-88366270 | MS.gene41635:intron | 30.0% |
| !!! | TGGTATCAATTGTCACTTTT+AGG | + | chr3.4:88366618-88366637 | MS.gene41635:intron | 30.0% |
| !!! | TTCTGTTTTTAGAAGAAGTG+CGG | - | chr3.4:88367506-88367525 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTAGGGAGAAGT+GGG | + | chr3.4:88366252-88366271 | MS.gene41635:intron | 30.0% |
| AAAAATCCTCTTCACAACGA+AGG | - | chr3.4:88365749-88365768 | None:intergenic | 35.0% | |
| AAACTATTCTGGTACATTGC+AGG | - | chr3.4:88367050-88367069 | None:intergenic | 35.0% | |
| AAATGAGGGTAATAAGACAG+TGG | - | chr3.4:88367457-88367476 | None:intergenic | 35.0% | |
| AACCATTGCCCTACATTATA+GGG | + | chr3.4:88365957-88365976 | MS.gene41635:intron | 35.0% | |
| AACTTGTAAACGGGATAACA+AGG | + | chr3.4:88365605-88365624 | MS.gene41635:intron | 35.0% | |
| AATAGCTGTAGATGGATCAA+TGG | + | chr3.4:88366466-88366485 | MS.gene41635:intron | 35.0% | |
| AGAGTTGAAATGTGATGTTG+AGG | + | chr3.4:88365367-88365386 | MS.gene41635:CDS | 35.0% | |
| AGTGAGAGACAACTTGTAAA+CGG | + | chr3.4:88365595-88365614 | MS.gene41635:intron | 35.0% | |
| CTCTGCAAAAAGATGAACAA+TGG | - | chr3.4:88365320-88365339 | None:intergenic | 35.0% | |
| CTGATACTGGTACAAAAATG+AGG | - | chr3.4:88367472-88367491 | None:intergenic | 35.0% | |
| GCAAATCACAGTATATGTCA+AGG | - | chr3.4:88367310-88367329 | None:intergenic | 35.0% | |
| GCTCAAAATATAGAAGACCA+TGG | - | chr3.4:88367086-88367105 | None:intergenic | 35.0% | |
| GGATATTAAGACACTGATAC+TGG | - | chr3.4:88367485-88367504 | None:intergenic | 35.0% | |
| GTATCATTAAAACAGGAGGT+CGG | - | chr3.4:88367784-88367803 | None:intergenic | 35.0% | |
| GTGATGTTGAGGTATGTATT+CGG | + | chr3.4:88365378-88365397 | MS.gene41635:intron | 35.0% | |
| GTTAGCTAATGACCTAAAGT+TGG | - | chr3.4:88365433-88365452 | None:intergenic | 35.0% | |
| GTTCATCTCAAACTATGGAA+TGG | - | chr3.4:88366996-88367015 | None:intergenic | 35.0% | |
| GTTCTACATCCTACTTTAGT+GGG | - | chr3.4:88366731-88366750 | None:intergenic | 35.0% | |
| TAACCATTGCCCTACATTAT+AGG | + | chr3.4:88365956-88365975 | MS.gene41635:intron | 35.0% | |
| TCCTATTCAATTGCAGGTTT+GGG | + | chr3.4:88367723-88367742 | MS.gene41635:intron | 35.0% | |
| TGCAGATCTAGCAATTTCTT+GGG | - | chr3.4:88366495-88366514 | None:intergenic | 35.0% | |
| TGTACTTAACTGTCAGCAAA+AGG | - | chr3.4:88366074-88366093 | None:intergenic | 35.0% | |
| TTCCTATTCAATTGCAGGTT+TGG | + | chr3.4:88367722-88367741 | MS.gene41635:intron | 35.0% | |
| TTGCAGATCTAGCAATTTCT+TGG | - | chr3.4:88366496-88366515 | None:intergenic | 35.0% | |
| ! | AATGGATTCTTTCCTTCAAC+TGG | + | chr3.4:88366832-88366851 | MS.gene41635:intron | 35.0% |
| ! | CATTGTTCATCTTTTTGCAG+AGG | + | chr3.4:88365318-88365337 | MS.gene41635:intron | 35.0% |
| ! | CATTTCAACTCTTTTGGACA+AGG | - | chr3.4:88365359-88365378 | None:intergenic | 35.0% |
| ! | CTTTATGATGCTAGGCTTTT+TGG | + | chr3.4:88365138-88365157 | MS.gene41635:intron | 35.0% |
| ! | TGACATATACTGTGATTTGC+AGG | + | chr3.4:88367310-88367329 | MS.gene41635:intron | 35.0% |
| !! | AATTCTAAGATCTCCCATAG+AGG | + | chr3.4:88365669-88365688 | MS.gene41635:intron | 35.0% |
| !! | ATTCTAAGATCTCCCATAGA+GGG | + | chr3.4:88365670-88365689 | MS.gene41635:intron | 35.0% |
| !!! | GTTTTTTCAATGCCATTCGA+CGG | - | chr3.4:88365713-88365732 | None:intergenic | 35.0% |
| AAACCGGTCGATAGAATTCT+AGG | - | chr3.4:88366754-88366773 | None:intergenic | 40.0% | |
| AAATTTCTGTGATCGGCCAA+AGG | + | chr3.4:88366123-88366142 | MS.gene41635:CDS | 40.0% | |
| AACCCTAGAATTCTATCGAC+CGG | + | chr3.4:88366748-88366767 | MS.gene41635:intron | 40.0% | |
| AACCGGTCGATAGAATTCTA+GGG | - | chr3.4:88366753-88366772 | None:intergenic | 40.0% | |
| ACAACCAGAAGAAGTCATTG+GGG | + | chr3.4:88366156-88366175 | MS.gene41635:CDS | 40.0% | |
| ACATGTCGATGCAGGAATTA+GGG | + | chr3.4:88365826-88365845 | MS.gene41635:intron | 40.0% | |
| ACCCATGGATAGAAGAATAG+AGG | + | chr3.4:88367834-88367853 | MS.gene41635:CDS | 40.0% | |
| ACCCTCTATTCTTCTATCCA+TGG | - | chr3.4:88367839-88367858 | None:intergenic | 40.0% | |
| ACTGTCAGCAAAAGGAAGTT+AGG | - | chr3.4:88366066-88366085 | None:intergenic | 40.0% | |
| AGAACAATGAGATACACACC+TGG | + | chr3.4:88367564-88367583 | MS.gene41635:CDS | 40.0% | |
| AGACTCAGACAAATGAAGCA+AGG | + | chr3.4:88366415-88366434 | MS.gene41635:intron | 40.0% | |
| ATCCCTATAATGTAGGGCAA+TGG | - | chr3.4:88365962-88365981 | None:intergenic | 40.0% | |
| ATTCCATGACCCACTAAAGT+AGG | + | chr3.4:88366719-88366738 | MS.gene41635:intron | 40.0% | |
| ATTGATGAGAGAAAATGGGG+AGG | + | chr3.4:88366906-88366925 | MS.gene41635:intron | 40.0% | |
| CAATTGATACCAAGGTGCAT+TGG | - | chr3.4:88366610-88366629 | None:intergenic | 40.0% | |
| CACAACCAGAAGAAGTCATT+GGG | + | chr3.4:88366155-88366174 | MS.gene41635:CDS | 40.0% | |
| CAGTCTTCAATAGCTGTAGA+TGG | + | chr3.4:88366458-88366477 | MS.gene41635:intron | 40.0% | |
| CATATCTCTCATCCAGTTGA+AGG | - | chr3.4:88366847-88366866 | None:intergenic | 40.0% | |
| CATGAATTAGGAAATCCTCC+GGG | - | chr3.4:88367416-88367435 | None:intergenic | 40.0% | |
| CCATGAATTAGGAAATCCTC+CGG | - | chr3.4:88367417-88367436 | None:intergenic | 40.0% | |
| CCCATGGATAGAAGAATAGA+GGG | + | chr3.4:88367835-88367854 | MS.gene41635:CDS | 40.0% | |
| CCCTCTATTCTTCTATCCAT+GGG | - | chr3.4:88367838-88367857 | None:intergenic | 40.0% | |
| CCTATTCAATTGCAGGTTTG+GGG | + | chr3.4:88367724-88367743 | MS.gene41635:intron | 40.0% | |
| CGGAGGATTTCCTAATTCAT+GGG | + | chr3.4:88367415-88367434 | MS.gene41635:CDS | 40.0% | |
| CTACTGTACTTCAGAACTTG+CGG | + | chr3.4:88367535-88367554 | MS.gene41635:CDS | 40.0% | |
| CTTCAACTGGATGAGAGATA+TGG | + | chr3.4:88366845-88366864 | MS.gene41635:intron | 40.0% | |
| CTTCCTAGACAGAAATTGAG+TGG | - | chr3.4:88365571-88365590 | None:intergenic | 40.0% | |
| GAAATAGTTATCAGGGTCTC+TGG | - | chr3.4:88364868-88364887 | None:intergenic | 40.0% | |
| GAACAATGAGATACACACCT+GGG | + | chr3.4:88367565-88367584 | MS.gene41635:CDS | 40.0% | |
| GCACAAATTGTTTGCATGAC+AGG | - | chr3.4:88365505-88365524 | None:intergenic | 40.0% | |
| GGAAAACGCTGCTTATATGA+AGG | + | chr3.4:88367380-88367399 | MS.gene41635:CDS | 40.0% | |
| GGTTCTACATCCTACTTTAG+TGG | - | chr3.4:88366732-88366751 | None:intergenic | 40.0% | |
| GTGAGAGACAACTTGTAAAC+GGG | + | chr3.4:88365596-88365615 | MS.gene41635:intron | 40.0% | |
| TACATATGCCATCAGAGACA+TGG | + | chr3.4:88366090-88366109 | MS.gene41635:CDS | 40.0% | |
| TACATGTCGATGCAGGAATT+AGG | + | chr3.4:88365825-88365844 | MS.gene41635:intron | 40.0% | |
| TCAAACTATGGAATGGAGCA+AGG | - | chr3.4:88366989-88367008 | None:intergenic | 40.0% | |
| TCTATTCTTCTATCCATGGG+TGG | - | chr3.4:88367835-88367854 | None:intergenic | 40.0% | |
| TGCTGACCTGCTCATAATAT+AGG | - | chr3.4:88365038-88365057 | None:intergenic | 40.0% | |
| TTACGTATACATGTCGATGC+AGG | + | chr3.4:88365818-88365837 | MS.gene41635:intron | 40.0% | |
| TTCTGGGTGAAAGGAAAAAC+TGG | - | chr3.4:88366671-88366690 | None:intergenic | 40.0% | |
| TTGATGAGAGAAAATGGGGA+GGG | + | chr3.4:88366907-88366926 | MS.gene41635:intron | 40.0% | |
| ! | AGAATTCTATCGACCGGTTT+AGG | + | chr3.4:88366754-88366773 | MS.gene41635:intron | 40.0% |
| ! | AGTCAAGGTATTCAGACACA+CGG | - | chr3.4:88367235-88367254 | None:intergenic | 40.0% |
| ! | CAATGACTTCTTCTGGTTGT+GGG | - | chr3.4:88366156-88366175 | None:intergenic | 40.0% |
| ! | TACTGTGATTTGCAGGACAT+TGG | + | chr3.4:88367317-88367336 | MS.gene41635:intron | 40.0% |
| ! | TATACGACAAAGTGCTACAG+AGG | + | chr3.4:88366578-88366597 | MS.gene41635:intron | 40.0% |
| ! | TATGATGCTAGGCTTTTTGG+AGG | + | chr3.4:88365141-88365160 | MS.gene41635:intron | 40.0% |
| !! | AGGATTTATTTTCCTGGGCA+AGG | - | chr3.4:88365459-88365478 | None:intergenic | 40.0% |
| !! | GGATTTATTTTCCTGGGCAA+GGG | - | chr3.4:88365458-88365477 | None:intergenic | 40.0% |
| AACACGAGAGGATCCATTCT+AGG | + | chr3.4:88365642-88365661 | MS.gene41635:intron | 45.0% | |
| AATTAGGAAATCCTCCGGGT+GGG | - | chr3.4:88367412-88367431 | None:intergenic | 45.0% | |
| ATACCAAGGTGCATTGGACT+CGG | - | chr3.4:88366604-88366623 | None:intergenic | 45.0% | |
| ATATGCCATCAGAGACATGG+AGG | + | chr3.4:88366093-88366112 | MS.gene41635:CDS | 45.0% | |
| ATCACCCAAACCACCTAAAC+CGG | - | chr3.4:88366770-88366789 | None:intergenic | 45.0% | |
| ATGAGATACACACCTGGGAT+CGG | + | chr3.4:88367570-88367589 | MS.gene41635:CDS | 45.0% | |
| ATGTCGATGCAGGAATTAGG+GGG | + | chr3.4:88365828-88365847 | MS.gene41635:intron | 45.0% | |
| ATTCCTGGAGCTAAGATCAC+AGG | - | chr3.4:88366210-88366229 | None:intergenic | 45.0% | |
| ATTCTTCTATCCATGGGTGG+TGG | - | chr3.4:88367832-88367851 | None:intergenic | 45.0% | |
| CAGGTTTGGGGACAAAAAGA+AGG | + | chr3.4:88367736-88367755 | MS.gene41635:intron | 45.0% | |
| CATGTCGATGCAGGAATTAG+GGG | + | chr3.4:88365827-88365846 | MS.gene41635:intron | 45.0% | |
| CCACAACCAGAAGAAGTCAT+TGG | + | chr3.4:88366154-88366173 | MS.gene41635:CDS | 45.0% | |
| CCCCAAACCTGCAATTGAAT+AGG | - | chr3.4:88367727-88367746 | None:intergenic | 45.0% | |
| CCGGAGGATTTCCTAATTCA+TGG | + | chr3.4:88367414-88367433 | MS.gene41635:CDS | 45.0% | |
| CCTAGACAGAAATTGAGTGG+AGG | - | chr3.4:88365568-88365587 | None:intergenic | 45.0% | |
| CCTCCACTCAATTTCTGTCT+AGG | + | chr3.4:88365565-88365584 | MS.gene41635:intron | 45.0% | |
| CTTACCCCAATGACTTCTTC+TGG | - | chr3.4:88366163-88366182 | None:intergenic | 45.0% | |
| GTATTCCTCCATGTCTCTGA+TGG | - | chr3.4:88366101-88366120 | None:intergenic | 45.0% | |
| ! | ATTCTATCGACCGGTTTAGG+TGG | + | chr3.4:88366757-88366776 | MS.gene41635:intron | 45.0% |
| ! | CATCCTACTTTAGTGGGTCA+TGG | - | chr3.4:88366725-88366744 | None:intergenic | 45.0% |
| ! | CCAATGACTTCTTCTGGTTG+TGG | - | chr3.4:88366157-88366176 | None:intergenic | 45.0% |
| ! | GATCGGGGTTATGATGATGA+TGG | + | chr3.4:88367587-88367606 | MS.gene41635:CDS | 45.0% |
| !! | CGCAAGTTCTGAAGTACAGT+AGG | - | chr3.4:88367537-88367556 | None:intergenic | 45.0% |
| !! | ATTAATAATATTTAAATCTT+GGG | - | chr3.4:88365935-88365954 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTTTTTAATTTC+TGG | + | chr3.4:88367161-88367180 | MS.gene41635:intron | 5.0% |
| AGAGAAAATGGGGAGGGAGA+TGG | + | chr3.4:88366913-88366932 | MS.gene41635:intron | 50.0% | |
| AGTCTACCAACCTGGCGAAA+GGG | - | chr3.4:88365179-88365198 | None:intergenic | 50.0% | |
| ATCATCATAACCCCGATCCC+AGG | - | chr3.4:88367585-88367604 | None:intergenic | 50.0% | |
| ATTAGGAAATCCTCCGGGTG+GGG | - | chr3.4:88367411-88367430 | None:intergenic | 50.0% | |
| CATCCTGTGATCTTAGCTCC+AGG | + | chr3.4:88366204-88366223 | MS.gene41635:intron | 50.0% | |
| GAATTAGGAAATCCTCCGGG+TGG | - | chr3.4:88367413-88367432 | None:intergenic | 50.0% | |
| GCTATGCCTTCGTTGTGAAG+AGG | + | chr3.4:88365740-88365759 | MS.gene41635:intron | 50.0% | |
| TAGTCTACCAACCTGGCGAA+AGG | - | chr3.4:88365180-88365199 | None:intergenic | 50.0% | |
| TATGAAGGTTCAACCCCACC+CGG | + | chr3.4:88367395-88367414 | MS.gene41635:CDS | 50.0% | |
| TGAGATACACACCTGGGATC+GGG | + | chr3.4:88367571-88367590 | MS.gene41635:CDS | 50.0% | |
| TTAAAACAGGAGGTCGGTGC+AGG | - | chr3.4:88367778-88367797 | None:intergenic | 50.0% | |
| TTAGCTAACAACCCTTGCCC+AGG | + | chr3.4:88365444-88365463 | MS.gene41635:intron | 50.0% | |
| ! | ATCGACCGGTTTAGGTGGTT+TGG | + | chr3.4:88366762-88366781 | MS.gene41635:intron | 50.0% |
| ! | CATCTCAAGCGTTGTTCACG+TGG | + | chr3.4:88367359-88367378 | MS.gene41635:CDS | 50.0% |
| ! | CTGCTGCTGAAGCAACGTTT+TGG | + | chr3.4:88366539-88366558 | MS.gene41635:intron | 50.0% |
| ! | TATCAGGGTCTCTGGAAGCT+TGG | - | chr3.4:88364860-88364879 | None:intergenic | 50.0% |
| ! | TCGACCGGTTTAGGTGGTTT+GGG | + | chr3.4:88366763-88366782 | MS.gene41635:intron | 50.0% |
| !! | TTCTATCCATGGGTGGTGGA+GGG | - | chr3.4:88367828-88367847 | None:intergenic | 50.0% |
| AAATGGGGAGGGAGATGGAG+AGG | + | chr3.4:88366918-88366937 | MS.gene41635:intron | 55.0% | |
| ACCTGGCGAAAGGGTTTCTG+TGG | - | chr3.4:88365170-88365189 | None:intergenic | 55.0% | |
| CAGAAACCCTTTCGCCAGGT+TGG | + | chr3.4:88365170-88365189 | MS.gene41635:intron | 55.0% | |
| CCAGCTGCTGAGCTAGTTGA+TGG | + | chr3.4:88365003-88365022 | MS.gene41635:CDS | 55.0% | |
| CCATCAACTAGCTCAGCAGC+TGG | - | chr3.4:88365006-88365025 | None:intergenic | 55.0% | |
| GAGATACACACCTGGGATCG+GGG | + | chr3.4:88367572-88367591 | MS.gene41635:CDS | 55.0% | |
| GGTGCAGGCTTGAACTCGTA+AGG | - | chr3.4:88367763-88367782 | None:intergenic | 55.0% | |
| GGTGGAGGGGGGAAATTCAA+GGG | - | chr3.4:88367814-88367833 | None:intergenic | 55.0% | |
| TCCACAGAAACCCTTTCGCC+AGG | + | chr3.4:88365166-88365185 | MS.gene41635:CDS | 55.0% | |
| TGGTGGAGGGGGGAAATTCA+AGG | - | chr3.4:88367815-88367834 | None:intergenic | 55.0% | |
| ! | CTTCTATCCATGGGTGGTGG+AGG | - | chr3.4:88367829-88367848 | None:intergenic | 55.0% |
| ! | GGTGGTTTGGGTGATGCAGT+TGG | + | chr3.4:88366775-88366794 | MS.gene41635:intron | 55.0% |
| ! | GTCTCTGGAAGCTTGGTCCT+TGG | - | chr3.4:88364853-88364872 | None:intergenic | 55.0% |
| !! | TCTATCCATGGGTGGTGGAG+GGG | - | chr3.4:88367827-88367846 | None:intergenic | 55.0% |
| AGGCCGAGTCCAATGCACCT+TGG | + | chr3.4:88366598-88366617 | MS.gene41635:intron | 60.0% | |
| !! | CTATCCATGGGTGGTGGAGG+GGG | - | chr3.4:88367826-88367845 | None:intergenic | 60.0% |
| !! | GGTTGTGGGCGCTGATCCTT+TGG | - | chr3.4:88366142-88366161 | None:intergenic | 60.0% |
| !! | TATCCATGGGTGGTGGAGGG+GGG | - | chr3.4:88367825-88367844 | None:intergenic | 60.0% |
| GAAGGTTCAACCCCACCCGG+AGG | + | chr3.4:88367398-88367417 | MS.gene41635:CDS | 65.0% | |
| GGGGAGGGAGATGGAGAGGA+TGG | + | chr3.4:88366922-88366941 | MS.gene41635:intron | 65.0% | |
| TTTCCCCCCTCCACCACCCA+TGG | + | chr3.4:88367819-88367838 | MS.gene41635:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88364834 | 88367879 | 88364834 | ID=MS.gene41635 |
| chr3.4 | mRNA | 88364834 | 88367879 | 88364834 | ID=MS.gene41635.t1;Parent=MS.gene41635 |
| chr3.4 | exon | 88364834 | 88364895 | 88364834 | ID=MS.gene41635.t1.exon1;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88364834 | 88364895 | 88364834 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88364990 | 88365050 | 88364990 | ID=MS.gene41635.t1.exon2;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88364990 | 88365050 | 88364990 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88365152 | 88365187 | 88365152 | ID=MS.gene41635.t1.exon3;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88365152 | 88365187 | 88365152 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88365338 | 88365388 | 88365338 | ID=MS.gene41635.t1.exon4;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88365338 | 88365388 | 88365338 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88366085 | 88366177 | 88366085 | ID=MS.gene41635.t1.exon5;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88366085 | 88366177 | 88366085 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88367332 | 88367436 | 88367332 | ID=MS.gene41635.t1.exon6;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88367332 | 88367436 | 88367332 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88367524 | 88367616 | 88367524 | ID=MS.gene41635.t1.exon7;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88367524 | 88367616 | 88367524 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| chr3.4 | exon | 88367739 | 88367879 | 88367739 | ID=MS.gene41635.t1.exon8;Parent=MS.gene41635.t1 |
| chr3.4 | CDS | 88367739 | 88367879 | 88367739 | ID=cds.MS.gene41635.t1;Parent=MS.gene41635.t1 |
| Gene Sequence |
| Protein sequence |
