Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41860.t1 | XP_013449529.1 | 97.5 | 315 | 7 | 1 | 1 | 314 | 1 | 315 | 3.80E-175 | 624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41860.t1 | Q9FYE1 | 62.1 | 322 | 103 | 6 | 6 | 314 | 9 | 324 | 3.1e-109 | 396.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41860.t1 | Q2HUG6 | 97.5 | 315 | 7 | 1 | 1 | 314 | 1 | 315 | 2.7e-175 | 624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052630 | MS.gene41860 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene41860 | 0.81465 | 1.38E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41860.t1 | MTR_7g088035 | 97.460 | 315 | 7 | 1 | 1 | 314 | 1 | 315 | 0.0 | 632 |
| MS.gene41860.t1 | MTR_2g063570 | 46.597 | 191 | 94 | 4 | 7 | 191 | 6 | 194 | 7.53e-50 | 171 |
| MS.gene41860.t1 | MTR_2g063570 | 57.317 | 82 | 35 | 0 | 231 | 312 | 319 | 400 | 3.83e-24 | 101 |
| MS.gene41860.t1 | MTR_8g447080 | 53.846 | 156 | 69 | 2 | 7 | 161 | 3 | 156 | 1.57e-49 | 170 |
| MS.gene41860.t1 | MTR_8g447080 | 51.807 | 83 | 40 | 0 | 230 | 312 | 329 | 411 | 1.79e-22 | 97.1 |
| MS.gene41860.t1 | MTR_0340s0030 | 25.466 | 322 | 176 | 9 | 6 | 312 | 3 | 275 | 4.81e-23 | 96.7 |
| MS.gene41860.t1 | MTR_7g451400 | 34.667 | 150 | 94 | 2 | 6 | 151 | 73 | 222 | 2.27e-20 | 90.5 |
| MS.gene41860.t1 | MTR_2g008970 | 35.526 | 152 | 92 | 3 | 5 | 151 | 87 | 237 | 3.99e-20 | 90.1 |
| MS.gene41860.t1 | MTR_2g008970 | 35.526 | 152 | 92 | 3 | 5 | 151 | 87 | 237 | 4.25e-20 | 89.4 |
| MS.gene41860.t1 | MTR_4g094202 | 36.667 | 150 | 89 | 3 | 7 | 151 | 101 | 249 | 1.42e-19 | 88.6 |
| MS.gene41860.t1 | MTR_2g008990 | 36.538 | 156 | 84 | 6 | 5 | 151 | 115 | 264 | 1.35e-18 | 85.9 |
| MS.gene41860.t1 | MTR_2g008990 | 36.538 | 156 | 84 | 6 | 5 | 151 | 115 | 264 | 1.44e-18 | 85.9 |
| MS.gene41860.t1 | MTR_4g094210 | 35.762 | 151 | 91 | 4 | 5 | 151 | 115 | 263 | 1.45e-18 | 85.9 |
| MS.gene41860.t1 | MTR_2g008990 | 36.538 | 156 | 84 | 6 | 5 | 151 | 115 | 264 | 1.58e-18 | 85.9 |
| MS.gene41860.t1 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 1.55e-17 | 81.3 |
| MS.gene41860.t1 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 3.13e-17 | 81.6 |
| MS.gene41860.t1 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 3.29e-17 | 81.6 |
| MS.gene41860.t1 | MTR_2g008980 | 33.333 | 153 | 94 | 5 | 5 | 151 | 109 | 259 | 3.41e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41860.t1 | AT5G04200 | 61.801 | 322 | 104 | 6 | 6 | 314 | 9 | 324 | 2.28e-140 | 400 |
| MS.gene41860.t1 | AT1G79320 | 40.054 | 367 | 153 | 7 | 9 | 312 | 5 | 367 | 1.03e-80 | 249 |
| MS.gene41860.t1 | AT1G79330 | 38.386 | 409 | 147 | 9 | 7 | 312 | 3 | 409 | 5.46e-77 | 241 |
| MS.gene41860.t1 | AT1G16420 | 37.008 | 381 | 157 | 10 | 9 | 312 | 5 | 379 | 6.79e-66 | 212 |
| MS.gene41860.t1 | AT1G79310 | 34.328 | 402 | 166 | 9 | 7 | 312 | 3 | 402 | 3.14e-62 | 203 |
| MS.gene41860.t1 | AT1G79340 | 56.410 | 156 | 65 | 2 | 7 | 161 | 3 | 156 | 5.72e-53 | 179 |
| MS.gene41860.t1 | AT1G79340 | 54.217 | 83 | 38 | 0 | 230 | 312 | 335 | 417 | 1.99e-23 | 100 |
| MS.gene41860.t1 | AT4G25110 | 27.907 | 301 | 156 | 7 | 6 | 296 | 115 | 364 | 1.73e-21 | 94.4 |
| MS.gene41860.t1 | AT4G25110 | 27.907 | 301 | 155 | 7 | 6 | 296 | 115 | 363 | 3.13e-21 | 93.6 |
| MS.gene41860.t1 | AT1G02170 | 34.667 | 150 | 93 | 3 | 6 | 151 | 79 | 227 | 2.78e-20 | 90.5 |
| MS.gene41860.t1 | AT5G64240 | 32.759 | 174 | 107 | 3 | 6 | 175 | 89 | 256 | 1.67e-18 | 84.7 |
| MS.gene41860.t1 | AT5G64240 | 32.759 | 174 | 107 | 3 | 6 | 175 | 89 | 256 | 1.70e-18 | 85.5 |
Find 61 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTCCATTACTCATATT+TGG | 0.091095 | 7.3:+21281657 | None:intergenic |
| AATTGTGTTGAAGGAAAATA+AGG | 0.233658 | 7.3:-21281607 | MS.gene41860:CDS |
| CGCAATTCATTGGGAGTGTT+TGG | 0.257412 | 7.3:+21283085 | None:intergenic |
| AAACAAGAGGCTAGCAGTTT+TGG | 0.263316 | 7.3:-21283122 | MS.gene41860:CDS |
| GACACATTGGTGAAGCGTTT+TGG | 0.263796 | 7.3:-21283031 | MS.gene41860:CDS |
| CGGATGCAAGTTTGAGGTTT+CGG | 0.277127 | 7.3:-21281779 | MS.gene41860:CDS |
| GACTCATAGGGAATAGTCTT+TGG | 0.306736 | 7.3:+21281879 | None:intergenic |
| ATTGTTAGGCTTGCTCCTTT+TGG | 0.331058 | 7.3:+21282011 | None:intergenic |
| TATGCAACCACGCAATTCAT+TGG | 0.344858 | 7.3:+21283075 | None:intergenic |
| CTTCACCAATGTGTCCTTCA+TGG | 0.361633 | 7.3:+21283039 | None:intergenic |
| ACCATATAGATTTGGACTTC+AGG | 0.392417 | 7.3:-21282052 | MS.gene41860:intron |
| GAGAGGTTGTAGTGAAGGCT+AGG | 0.399760 | 7.3:-21281569 | MS.gene41860:CDS |
| ATGAGTAATGGAAAGGCTTA+TGG | 0.405309 | 7.3:-21281651 | MS.gene41860:CDS |
| ATCAGTGAGAAGCTGAATAT+TGG | 0.409562 | 7.3:+21282997 | None:intergenic |
| AAGGCTAGGGATGTTCTAAA+AGG | 0.409643 | 7.3:-21281555 | MS.gene41860:CDS |
| GTGTTGAAATATTGACTCAT+AGG | 0.419184 | 7.3:+21281866 | None:intergenic |
| TGCTGTTCAAATTGTGTTGA+AGG | 0.422102 | 7.3:-21281616 | MS.gene41860:CDS |
| AAAAGGATGTCCATGTATCT+TGG | 0.422231 | 7.3:+21282841 | None:intergenic |
| ATGCAACCACGCAATTCATT+GGG | 0.443326 | 7.3:+21283076 | None:intergenic |
| ATTATAGTGGACATGGAACT+AGG | 0.445716 | 7.3:-21282871 | MS.gene41860:CDS |
| TAAACAAGCATTATCAAGAA+TGG | 0.451128 | 7.3:-21282930 | MS.gene41860:CDS |
| TGTGACTTCAATCTTATCAC+TGG | 0.460452 | 7.3:-21282794 | MS.gene41860:intron |
| CTCAACAGAATCCCTTCATC+AGG | 0.469837 | 7.3:+21281717 | None:intergenic |
| TCGGCTCGGATGCAAGTTTG+AGG | 0.487860 | 7.3:-21281785 | MS.gene41860:CDS |
| ATTGTGTTGAAGGAAAATAA+GGG | 0.489662 | 7.3:-21281606 | MS.gene41860:CDS |
| TAATAGAGAGGTTGTAGTGA+AGG | 0.495094 | 7.3:-21281574 | MS.gene41860:CDS |
| TCTTCATCTACTATGCCAAC+TGG | 0.498050 | 7.3:-21282962 | MS.gene41860:CDS |
| AACATAAACACAACAGACAT+TGG | 0.500486 | 7.3:-21281828 | MS.gene41860:CDS |
| ATGAGTCCAAATATGAGTAA+TGG | 0.506659 | 7.3:-21281663 | MS.gene41860:CDS |
| ACTTCAGGCAACTAGTGAAT+CGG | 0.509698 | 7.3:-21282037 | MS.gene41860:CDS |
| ATAGCTTCTTCATGACGAAA+AGG | 0.518956 | 7.3:+21282824 | None:intergenic |
| TGTTTAATGTTAGCACCAGT+TGG | 0.522006 | 7.3:+21282947 | None:intergenic |
| AGCAAGCCTAACAATTCTCT+CGG | 0.533128 | 7.3:-21282003 | MS.gene41860:CDS |
| AGAGGTTGTAGTGAAGGCTA+GGG | 0.533509 | 7.3:-21281568 | MS.gene41860:CDS |
| TCCAAATATGAGTAATGGAA+AGG | 0.539255 | 7.3:-21281658 | MS.gene41860:CDS |
| TGGTTGATCAAGCTGAAGGA+GGG | 0.540137 | 7.3:-21282910 | MS.gene41860:CDS |
| AAATGATGTGTTGGCCATGA+AGG | 0.544128 | 7.3:-21283053 | MS.gene41860:CDS |
| CTAGTGAATCGGATTCCAAA+AGG | 0.548975 | 7.3:-21282026 | MS.gene41860:CDS |
| GGGGAAATTAAGTAATAGAG+AGG | 0.549150 | 7.3:-21281586 | MS.gene41860:CDS |
| TGTTGAAATATTGACTCATA+GGG | 0.554145 | 7.3:+21281867 | None:intergenic |
| CTCTCGGATTCATGTCATAG+TGG | 0.556554 | 7.3:-21281987 | MS.gene41860:CDS |
| GTTCTGTTGAAACCTGATGA+AGG | 0.559735 | 7.3:-21281729 | MS.gene41860:CDS |
| TTCTGTTGAAACCTGATGAA+GGG | 0.562927 | 7.3:-21281728 | MS.gene41860:CDS |
| ATGAATCCGAGAGAATTGTT+AGG | 0.563126 | 7.3:+21281997 | None:intergenic |
| GGATGTCCATGTATCTTGGA+AGG | 0.564804 | 7.3:+21282845 | None:intergenic |
| ACGTCACGCGATCTTGAAGA+AGG | 0.569985 | 7.3:-21281753 | MS.gene41860:CDS |
| AGGATTCCTTCCAAGATACA+TGG | 0.572846 | 7.3:-21282851 | MS.gene41860:CDS |
| TGATTGCAAACTGCAATGGA+AGG | 0.595196 | 7.3:-21283148 | None:intergenic |
| ATGGTTGATCAAGCTGAAGG+AGG | 0.605506 | 7.3:-21282911 | MS.gene41860:CDS |
| TTGTGTTGAAGGAAAATAAG+GGG | 0.606126 | 7.3:-21281605 | MS.gene41860:CDS |
| GGTTGATCAAGCTGAAGGAG+GGG | 0.613573 | 7.3:-21282909 | MS.gene41860:CDS |
| AGAATGGTTGATCAAGCTGA+AGG | 0.617527 | 7.3:-21282914 | MS.gene41860:CDS |
| TCGGATTCATGTCATAGTGG+TGG | 0.629875 | 7.3:-21281984 | MS.gene41860:CDS |
| TGGTTGCATAAATGATGTGT+TGG | 0.649661 | 7.3:-21283062 | MS.gene41860:CDS |
| AGGGATGTTCTAAAAGGACA+AGG | 0.659458 | 7.3:-21281549 | MS.gene41860:CDS |
| GATGAAGGGATTCTGTTGAG+TGG | 0.664175 | 7.3:-21281714 | MS.gene41860:CDS |
| AACACTCCCAATGAATTGCG+TGG | 0.668913 | 7.3:-21283082 | MS.gene41860:CDS |
| ATGATCACTTAGTTTCAATG+TGG | 0.671436 | 7.3:+21281905 | None:intergenic |
| GTGATAAGATTGAAGTCACA+AGG | 0.689446 | 7.3:+21282797 | None:intergenic |
| GTTGGCCATGAAGGACACAT+TGG | 0.700386 | 7.3:-21283044 | MS.gene41860:CDS |
| TCATCACTACAATAAAGACA+AGG | 0.723155 | 7.3:+21281513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGTTACAAAATTGTA+GGG | - | chr7.3:21281894-21281913 | MS.gene41860:CDS | 15.0% |
| !!! | CATATACTAATAGATTTTTT+TGG | + | chr7.3:21282320-21282339 | None:intergenic | 15.0% |
| !!! | GGATTTTTTTTTAATCATTT+TGG | - | chr7.3:21282044-21282063 | MS.gene41860:CDS | 15.0% |
| !!! | TTTTTAATCATTTTGGAATT+TGG | - | chr7.3:21282051-21282070 | MS.gene41860:intron | 15.0% |
| !! | ATCTTAAATTAACCAAATGT+AGG | + | chr7.3:21282104-21282123 | None:intergenic | 20.0% |
| !! | CAATTTAGTTACAAAATTGT+AGG | - | chr7.3:21281893-21281912 | MS.gene41860:CDS | 20.0% |
| !! | TATTGCATAGTTAAAACTAT+GGG | + | chr7.3:21282241-21282260 | None:intergenic | 20.0% |
| !! | TCTAATTCTATATGGTATTT+GGG | + | chr7.3:21282496-21282515 | None:intergenic | 20.0% |
| !! | TTATTGCATAGTTAAAACTA+TGG | + | chr7.3:21282242-21282261 | None:intergenic | 20.0% |
| !! | TTCTAATTCTATATGGTATT+TGG | + | chr7.3:21282497-21282516 | None:intergenic | 20.0% |
| !!! | ATTTTAATGACTAAATTGTG+TGG | - | chr7.3:21282077-21282096 | MS.gene41860:intron | 20.0% |
| !!! | CTACAATTTTGTAACTAAAT+TGG | + | chr7.3:21281895-21281914 | None:intergenic | 20.0% |
| !!! | CTTAAAATGATTGATTTGAA+AGG | + | chr7.3:21282004-21282023 | None:intergenic | 20.0% |
| ! | AATTGTGTTGAAGGAAAATA+AGG | - | chr7.3:21283005-21283024 | MS.gene41860:CDS | 25.0% |
| ! | ATTGCATAGTTAAAACTATG+GGG | + | chr7.3:21282240-21282259 | None:intergenic | 25.0% |
| ! | ATTGTGTTGAAGGAAAATAA+GGG | - | chr7.3:21283006-21283025 | MS.gene41860:CDS | 25.0% |
| ! | GACAAAGAAAAAGAACAAAT+TGG | - | chr7.3:21282658-21282677 | MS.gene41860:intron | 25.0% |
| ! | GCATAGTTTCTAATTCTATA+TGG | + | chr7.3:21282504-21282523 | None:intergenic | 25.0% |
| ! | GTTCATAAATAATGTGATTG+AGG | - | chr7.3:21282023-21282042 | MS.gene41860:CDS | 25.0% |
| ! | TAAACAAGCATTATCAAGAA+TGG | - | chr7.3:21281682-21281701 | MS.gene41860:CDS | 25.0% |
| ! | TGTCATATACCATATAGATT+TGG | - | chr7.3:21282552-21282571 | MS.gene41860:intron | 25.0% |
| !! | ACTACATTAACATACTGTTT+TGG | + | chr7.3:21282216-21282235 | None:intergenic | 25.0% |
| !! | CTACATTAACATACTGTTTT+GGG | + | chr7.3:21282215-21282234 | None:intergenic | 25.0% |
| !! | TTAACAATTTTGTTGAATGC+TGG | + | chr7.3:21282344-21282363 | None:intergenic | 25.0% |
| !!! | GTGCTTTATTTTCATTATAG+TGG | - | chr7.3:21281728-21281747 | MS.gene41860:CDS | 25.0% |
| !!! | TATTTTCATTATAGTGGACA+TGG | - | chr7.3:21281734-21281753 | MS.gene41860:CDS | 25.0% |
| !!! | TGTTGAAATATTGACTCATA+GGG | + | chr7.3:21282748-21282767 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTAAGATCAACAT+AGG | + | chr7.3:21282305-21282324 | None:intergenic | 25.0% |
| AACATAAACACAACAGACAT+TGG | - | chr7.3:21282784-21282803 | MS.gene41860:intron | 30.0% | |
| ATGAGTCCAAATATGAGTAA+TGG | - | chr7.3:21282949-21282968 | MS.gene41860:CDS | 30.0% | |
| ATGATCACTTAGTTTCAATG+TGG | + | chr7.3:21282710-21282729 | None:intergenic | 30.0% | |
| TCATCACTACAATAAAGACA+AGG | + | chr7.3:21283102-21283121 | None:intergenic | 30.0% | |
| TTGTGTTGAAGGAAAATAAG+GGG | - | chr7.3:21283007-21283026 | MS.gene41860:CDS | 30.0% | |
| ! | ATAGTAGATGAAGAGCTTTT+AGG | + | chr7.3:21281644-21281663 | None:intergenic | 30.0% |
| ! | TCCAAATATGAGTAATGGAA+AGG | - | chr7.3:21282954-21282973 | MS.gene41860:CDS | 30.0% |
| !! | GTGTTGAAATATTGACTCAT+AGG | + | chr7.3:21282749-21282768 | None:intergenic | 30.0% |
| !! | GTTCTTTTTCTTTGTCGATT+AGG | + | chr7.3:21282654-21282673 | None:intergenic | 30.0% |
| AAAAGGATGTCCATGTATCT+TGG | + | chr7.3:21281774-21281793 | None:intergenic | 35.0% | |
| AAATTGTGTGGTCCTACATT+TGG | - | chr7.3:21282089-21282108 | MS.gene41860:intron | 35.0% | |
| ACCATATAGATTTGGACTTC+AGG | - | chr7.3:21282560-21282579 | MS.gene41860:intron | 35.0% | |
| ACGACATAAGCTACATCAAA+AGG | + | chr7.3:21281858-21281877 | None:intergenic | 35.0% | |
| ATAGCTTCTTCATGACGAAA+AGG | + | chr7.3:21281791-21281810 | None:intergenic | 35.0% | |
| ATCAGTGAGAAGCTGAATAT+TGG | + | chr7.3:21281618-21281637 | None:intergenic | 35.0% | |
| ATGAATCCGAGAGAATTGTT+AGG | + | chr7.3:21282618-21282637 | None:intergenic | 35.0% | |
| CGACATAAGCTACATCAAAA+GGG | + | chr7.3:21281857-21281876 | None:intergenic | 35.0% | |
| GCCTTTCCATTACTCATATT+TGG | + | chr7.3:21282958-21282977 | None:intergenic | 35.0% | |
| GGGGAAATTAAGTAATAGAG+AGG | - | chr7.3:21283026-21283045 | MS.gene41860:CDS | 35.0% | |
| GTGATAAGATTGAAGTCACA+AGG | + | chr7.3:21281818-21281837 | None:intergenic | 35.0% | |
| TAATAGAGAGGTTGTAGTGA+AGG | - | chr7.3:21283038-21283057 | MS.gene41860:CDS | 35.0% | |
| TGCTGTTCAAATTGTGTTGA+AGG | - | chr7.3:21282996-21283015 | MS.gene41860:CDS | 35.0% | |
| TGGTTGCATAAATGATGTGT+TGG | - | chr7.3:21281550-21281569 | MS.gene41860:CDS | 35.0% | |
| TGTGACTTCAATCTTATCAC+TGG | - | chr7.3:21281818-21281837 | MS.gene41860:CDS | 35.0% | |
| TGTTTAATGTTAGCACCAGT+TGG | + | chr7.3:21281668-21281687 | None:intergenic | 35.0% | |
| TTCTGTTGAAACCTGATGAA+GGG | - | chr7.3:21282884-21282903 | MS.gene41860:CDS | 35.0% | |
| ! | ACTCATCTCCTTGAGTTTTT+CGG | - | chr7.3:21282808-21282827 | MS.gene41860:CDS | 35.0% |
| ! | ATGAGTAATGGAAAGGCTTA+TGG | - | chr7.3:21282961-21282980 | MS.gene41860:CDS | 35.0% |
| ! | TTTTTGTCATCAAACGAGGA+TGG | + | chr7.3:21282685-21282704 | None:intergenic | 35.0% |
| !! | ATTATAGTGGACATGGAACT+AGG | - | chr7.3:21281741-21281760 | MS.gene41860:CDS | 35.0% |
| ACTTCAGGCAACTAGTGAAT+CGG | - | chr7.3:21282575-21282594 | MS.gene41860:intron | 40.0% | |
| AGAATGGTTGATCAAGCTGA+AGG | - | chr7.3:21281698-21281717 | MS.gene41860:CDS | 40.0% | |
| AGCAAGCCTAACAATTCTCT+CGG | - | chr7.3:21282609-21282628 | MS.gene41860:intron | 40.0% | |
| AGGATTCCTTCCAAGATACA+TGG | - | chr7.3:21281761-21281780 | MS.gene41860:CDS | 40.0% | |
| ATGCAACCACGCAATTCATT+GGG | + | chr7.3:21281539-21281558 | None:intergenic | 40.0% | |
| CTAGTGAATCGGATTCCAAA+AGG | - | chr7.3:21282586-21282605 | MS.gene41860:intron | 40.0% | |
| GACTCATAGGGAATAGTCTT+TGG | + | chr7.3:21282736-21282755 | None:intergenic | 40.0% | |
| GCCTGAAGTCCAAATCTATA+TGG | + | chr7.3:21282564-21282583 | None:intergenic | 40.0% | |
| GTTCTGTTGAAACCTGATGA+AGG | - | chr7.3:21282883-21282902 | MS.gene41860:CDS | 40.0% | |
| TACCACCAAATCGTCTTGAT+CGG | + | chr7.3:21281925-21281944 | None:intergenic | 40.0% | |
| TATGCAACCACGCAATTCAT+TGG | + | chr7.3:21281540-21281559 | None:intergenic | 40.0% | |
| TCTTCATCTACTATGCCAAC+TGG | - | chr7.3:21281650-21281669 | MS.gene41860:CDS | 40.0% | |
| ! | AAACAAGAGGCTAGCAGTTT+TGG | - | chr7.3:21281490-21281509 | MS.gene41860:CDS | 40.0% |
| ! | AAATGATGTGTTGGCCATGA+AGG | - | chr7.3:21281559-21281578 | MS.gene41860:CDS | 40.0% |
| ! | AAGGCTAGGGATGTTCTAAA+AGG | - | chr7.3:21283057-21283076 | MS.gene41860:CDS | 40.0% |
| ! | GGCATTTTTGTCATCAAACG+AGG | + | chr7.3:21282689-21282708 | None:intergenic | 40.0% |
| !! | ACACATTGGTGAAGCGTTTT+GGG | - | chr7.3:21281582-21281601 | MS.gene41860:CDS | 40.0% |
| !! | AGGGATGTTCTAAAAGGACA+AGG | - | chr7.3:21283063-21283082 | MS.gene41860:CDS | 40.0% |
| !! | ATTGTTAGGCTTGCTCCTTT+TGG | + | chr7.3:21282604-21282623 | None:intergenic | 40.0% |
| AACACTCCCAATGAATTGCG+TGG | - | chr7.3:21281530-21281549 | MS.gene41860:CDS | 45.0% | |
| AGAGGTTGTAGTGAAGGCTA+GGG | - | chr7.3:21283044-21283063 | MS.gene41860:CDS | 45.0% | |
| ATCAGCCGATCAAGACGATT+TGG | - | chr7.3:21281917-21281936 | MS.gene41860:CDS | 45.0% | |
| ATGGTTGATCAAGCTGAAGG+AGG | - | chr7.3:21281701-21281720 | MS.gene41860:CDS | 45.0% | |
| CTCAACAGAATCCCTTCATC+AGG | + | chr7.3:21282898-21282917 | None:intergenic | 45.0% | |
| CTCTCGGATTCATGTCATAG+TGG | - | chr7.3:21282625-21282644 | MS.gene41860:intron | 45.0% | |
| CTTCACCAATGTGTCCTTCA+TGG | + | chr7.3:21281576-21281595 | None:intergenic | 45.0% | |
| GATGAAGGGATTCTGTTGAG+TGG | - | chr7.3:21282898-21282917 | MS.gene41860:CDS | 45.0% | |
| GGATGTCCATGTATCTTGGA+AGG | + | chr7.3:21281770-21281789 | None:intergenic | 45.0% | |
| TCGGATTCATGTCATAGTGG+TGG | - | chr7.3:21282628-21282647 | MS.gene41860:intron | 45.0% | |
| TGGTTGATCAAGCTGAAGGA+GGG | - | chr7.3:21281702-21281721 | MS.gene41860:CDS | 45.0% | |
| ! | CGGATGCAAGTTTGAGGTTT+CGG | - | chr7.3:21282833-21282852 | MS.gene41860:CDS | 45.0% |
| !! | AAGAGGCTAGCAGTTTTGGT+AGG | - | chr7.3:21281494-21281513 | MS.gene41860:CDS | 45.0% |
| !! | CGCAATTCATTGGGAGTGTT+TGG | + | chr7.3:21281530-21281549 | None:intergenic | 45.0% |
| !! | GACACATTGGTGAAGCGTTT+TGG | - | chr7.3:21281581-21281600 | MS.gene41860:CDS | 45.0% |
| !! | TCTCCTTGAGTTTTTCGGCT+CGG | - | chr7.3:21282813-21282832 | MS.gene41860:CDS | 45.0% |
| ACGTCACGCGATCTTGAAGA+AGG | - | chr7.3:21282859-21282878 | MS.gene41860:CDS | 50.0% | |
| CATCCGAGCCGAAAAACTCA+AGG | + | chr7.3:21282819-21282838 | None:intergenic | 50.0% | |
| GAGAGGTTGTAGTGAAGGCT+AGG | - | chr7.3:21283043-21283062 | MS.gene41860:CDS | 50.0% | |
| GGTTGATCAAGCTGAAGGAG+GGG | - | chr7.3:21281703-21281722 | MS.gene41860:CDS | 50.0% | |
| GTTGGCCATGAAGGACACAT+TGG | - | chr7.3:21281568-21281587 | MS.gene41860:CDS | 50.0% | |
| ! | AGCCGATCAAGACGATTTGG+TGG | - | chr7.3:21281920-21281939 | MS.gene41860:CDS | 50.0% |
| !! | TCGGCTCGGATGCAAGTTTG+AGG | - | chr7.3:21282827-21282846 | MS.gene41860:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 21281479 | 21283155 | 21281479 | ID=MS.gene41860 |
| chr7.3 | mRNA | 21281479 | 21283155 | 21281479 | ID=MS.gene41860.t1;Parent=MS.gene41860 |
| chr7.3 | exon | 21282795 | 21283155 | 21282795 | ID=MS.gene41860.t1.exon1;Parent=MS.gene41860.t1 |
| chr7.3 | CDS | 21282795 | 21283155 | 21282795 | ID=cds.MS.gene41860.t1;Parent=MS.gene41860.t1 |
| chr7.3 | exon | 21281479 | 21282065 | 21281479 | ID=MS.gene41860.t1.exon2;Parent=MS.gene41860.t1 |
| chr7.3 | CDS | 21281479 | 21282065 | 21281479 | ID=cds.MS.gene41860.t1;Parent=MS.gene41860.t1 |
| Gene Sequence |
| Protein sequence |
