AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052630.t1 MTR_3g075390 96.409 362 13 0 1 362 1 362 0.0 737
MS.gene052630.t1 MTR_4g104370 76.243 362 84 2 1 362 1 360 0.0 592
MS.gene052630.t1 MTR_4g080700 57.692 312 121 7 35 343 35 338 5.70e-125 363
MS.gene052630.t1 MTR_4g080730 57.051 312 123 7 35 343 35 338 1.85e-124 362
MS.gene052630.t1 MTR_4g079770 52.586 348 155 7 1 343 1 343 2.47e-124 362
MS.gene052630.t1 MTR_5g022560 55.660 318 127 6 33 343 32 342 6.24e-124 360
MS.gene052630.t1 MTR_4g047610 57.962 314 121 7 38 344 33 342 1.44e-123 360
MS.gene052630.t1 MTR_4g079470 55.312 320 134 6 28 343 29 343 1.92e-123 359
MS.gene052630.t1 MTR_4g107930 50.568 352 156 7 1 343 1 343 3.69e-123 358
MS.gene052630.t1 MTR_1g107550 55.215 326 141 5 23 345 33 356 4.10e-122 360
MS.gene052630.t1 MTR_4g079800 53.395 324 134 6 28 343 29 343 1.25e-121 355
MS.gene052630.t1 MTR_3g116080 51.884 345 155 5 7 345 9 348 1.49e-121 355
MS.gene052630.t1 MTR_1g018840 51.576 349 160 6 6 346 16 363 1.62e-121 358
MS.gene052630.t1 MTR_4g094918 51.320 341 151 5 8 345 14 342 2.18e-121 355
MS.gene052630.t1 MTR_1g018840 51.576 349 160 6 6 346 16 363 4.32e-121 358
MS.gene052630.t1 MTR_3g102220 51.989 352 156 8 6 345 12 362 3.48e-120 355
MS.gene052630.t1 MTR_2g075830 54.227 343 142 7 6 343 7 339 1.03e-118 347
MS.gene052630.t1 MTR_4g079440 50.000 344 156 6 6 344 12 344 8.31e-117 342
MS.gene052630.t1 MTR_2g090890 49.138 348 165 5 1 346 1 338 6.81e-115 337
MS.gene052630.t1 MTR_4g080360 51.792 307 144 3 40 344 37 341 7.07e-113 332
MS.gene052630.t1 MTR_2g083930 46.313 339 171 5 10 344 12 343 2.39e-105 313
MS.gene052630.t1 MTR_7g078600 46.483 327 158 7 25 347 27 340 1.48e-99 298
MS.gene052630.t1 MTR_3g112430 48.875 311 156 3 39 347 35 344 5.89e-98 298
MS.gene052630.t1 MTR_7g079230 45.588 340 170 7 7 343 7 334 7.02e-98 294
MS.gene052630.t1 MTR_2g016180 43.636 330 168 11 25 345 36 356 8.88e-83 260
MS.gene052630.t1 MTR_2g016270 43.161 329 156 10 25 345 36 341 2.02e-82 259
MS.gene052630.t1 MTR_2g015850 44.966 298 158 5 48 344 71 363 2.80e-81 252
MS.gene052630.t1 MTR_4g065077 43.380 355 175 13 6 345 14 357 4.13e-76 239
MS.gene052630.t1 MTR_4g125300 44.295 298 146 9 53 344 65 348 2.33e-73 231
MS.gene052630.t1 MTR_2g015920 39.826 344 187 12 27 361 41 373 7.55e-73 231
MS.gene052630.t1 MTR_8g086470 41.714 350 172 12 6 345 30 357 1.43e-68 219
MS.gene052630.t1 MTR_2g015930 37.978 366 186 16 6 345 9 359 1.62e-65 212
MS.gene052630.t1 MTR_2g067900 41.860 301 158 11 55 344 32 326 1.31e-62 203
MS.gene052630.t1 MTR_1g023210 39.465 299 153 9 54 336 66 352 2.29e-61 201
MS.gene052630.t1 MTR_4g071060 37.793 299 157 8 54 336 63 348 1.29e-58 194
MS.gene052630.t1 MTR_2g067560 40.123 324 153 15 40 338 16 323 1.89e-58 203
MS.gene052630.t1 MTR_2g064475 37.609 343 164 13 40 342 16 348 2.17e-57 190
MS.gene052630.t1 MTR_1g023810 42.731 227 122 6 119 342 40 261 2.82e-56 185
MS.gene052630.t1 MTR_7g078630 42.652 279 112 10 40 304 706 950 3.55e-54 192
MS.gene052630.t1 MTR_1g094135 32.258 341 196 10 15 336 34 358 1.57e-52 179
MS.gene052630.t1 MTR_2g066980 34.853 307 143 11 55 343 50 317 2.99e-52 176
MS.gene052630.t1 MTR_4g072790 31.805 349 188 9 1 336 1 312 7.17e-44 154
MS.gene052630.t1 MTR_2g015840 31.429 315 144 8 32 343 25 270 1.06e-43 152
MS.gene052630.t1 MTR_7g078580 64.646 99 34 1 246 344 4 101 5.23e-43 145
MS.gene052630.t1 MTR_4g072340 34.021 291 147 9 54 336 63 316 7.32e-41 146
MS.gene052630.t1 MTR_4g073660 34.364 291 146 10 54 336 62 315 7.78e-41 146
MS.gene052630.t1 MTR_7g079130 64.835 91 32 0 254 344 7 97 5.84e-38 132
MS.gene052630.t1 MTR_2g047960 77.215 79 18 0 137 215 7 85 1.07e-35 125
MS.gene052630.t1 MTR_1g025450 41.954 174 77 7 127 296 54 207 1.97e-32 127
MS.gene052630.t1 MTR_2g016380 45.902 122 59 4 228 345 18 136 3.28e-28 110
MS.gene052630.t1 MTR_7g111060 27.536 276 164 11 86 336 66 330 4.94e-24 101
MS.gene052630.t1 MTR_7g111050 30.738 244 137 10 130 350 106 340 5.58e-23 99.0
MS.gene052630.t1 MTR_3g029560 32.547 212 114 8 139 344 49 237 7.21e-21 90.5
MS.gene052630.t1 MTR_7g079260 56.944 72 15 1 270 341 7 62 2.22e-20 85.5
MS.gene052630.t1 MTR_7g078310 34.857 175 95 6 48 217 84 244 7.28e-19 85.5
MS.gene052630.t1 MTR_8g087510 41.538 130 70 5 169 296 23 148 7.60e-19 83.6
MS.gene052630.t1 MTR_7g111050 29.648 199 117 7 130 307 101 297 2.96e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052630.t1 AT5G50260 70.833 360 104 1 4 362 2 361 0.0 556
MS.gene052630.t1 AT3G48340 66.759 361 117 2 4 362 2 361 0.0 514
MS.gene052630.t1 AT3G48350 63.611 360 129 2 4 362 2 360 2.98e-176 494
MS.gene052630.t1 AT3G48350 63.406 276 100 1 4 278 2 277 6.47e-133 382
MS.gene052630.t1 AT4G35350 51.862 349 158 4 3 345 9 353 1.86e-122 357
MS.gene052630.t1 AT1G20850 54.658 322 142 3 25 345 36 354 3.81e-122 357
MS.gene052630.t1 AT1G47128 48.991 347 166 4 6 346 13 354 1.99e-117 348
MS.gene052630.t1 AT5G43060 50.286 350 158 5 6 345 11 354 2.58e-117 348
MS.gene052630.t1 AT3G19390 48.159 353 174 6 1 350 5 351 1.17e-115 343
MS.gene052630.t1 AT5G45890 47.714 350 165 7 6 343 1 344 2.72e-115 338
MS.gene052630.t1 AT4G36880 51.368 329 149 6 32 351 41 367 7.85e-114 336
MS.gene052630.t1 AT1G06260 48.571 350 164 7 1 345 5 343 1.43e-107 319
MS.gene052630.t1 AT3G19400 51.592 314 142 7 39 347 43 351 1.44e-107 320
MS.gene052630.t1 AT4G11310 46.797 359 170 8 3 347 4 355 1.36e-105 315
MS.gene052630.t1 AT4G11320 46.499 357 169 8 6 347 13 362 2.96e-103 309
MS.gene052630.t1 AT4G11320 46.499 357 169 8 6 347 13 362 2.96e-103 309
MS.gene052630.t1 AT2G27420 45.533 347 174 5 6 344 8 347 3.98e-99 298
MS.gene052630.t1 AT4G23520 46.835 316 158 6 39 350 46 355 1.01e-98 297
MS.gene052630.t1 AT1G09850 48.710 310 152 4 38 345 30 334 1.26e-98 299
MS.gene052630.t1 AT3G49340 44.118 340 183 5 9 344 4 340 1.73e-97 293
MS.gene052630.t1 AT2G34080 44.348 345 181 6 6 344 5 344 4.38e-94 285
MS.gene052630.t1 AT1G29090 44.444 360 169 11 1 344 10 354 2.35e-90 275
MS.gene052630.t1 AT4G35350 49.645 282 132 4 3 278 9 286 5.14e-88 267
MS.gene052630.t1 AT3G43960 45.538 325 161 11 39 354 40 357 5.59e-88 270
MS.gene052630.t1 AT1G29080 41.311 351 193 8 1 344 1 345 1.42e-87 268
MS.gene052630.t1 AT1G29110 41.693 319 165 7 32 344 30 333 1.69e-78 244
MS.gene052630.t1 AT3G19400 50.000 240 111 6 39 273 43 278 6.12e-72 226
MS.gene052630.t1 AT5G60360 42.333 300 153 9 51 344 71 356 5.16e-70 223
MS.gene052630.t1 AT3G45310 41.391 302 153 10 51 344 71 356 1.32e-67 217
MS.gene052630.t1 AT5G60360 42.000 300 153 10 51 344 71 355 1.77e-67 217
MS.gene052630.t1 AT3G45310 41.060 302 153 11 51 344 71 355 4.49e-65 211
MS.gene052630.t1 AT5G60360 42.143 280 146 8 51 324 71 340 7.70e-65 210
MS.gene052630.t1 AT2G21430 34.091 352 198 10 5 336 12 349 4.52e-61 200
MS.gene052630.t1 AT4G39090 37.458 299 159 8 54 336 66 352 1.22e-57 191
MS.gene052630.t1 AT3G54940 38.127 299 159 9 54 336 66 354 2.62e-55 185
MS.gene052630.t1 AT4G16190 37.919 298 159 9 55 336 71 358 9.28e-54 181
MS.gene052630.t1 AT3G54940 38.140 215 121 4 54 260 66 276 4.10e-39 140
MS.gene052630.t1 AT1G02305 27.596 337 209 11 50 362 33 358 1.09e-26 109
MS.gene052630.t1 AT4G01610 29.352 293 166 13 85 350 65 343 3.27e-23 99.8
MS.gene052630.t1 AT4G01610 28.669 293 168 13 85 350 65 343 3.05e-21 94.0
MS.gene052630.t1 AT2G22160 46.465 99 49 1 53 151 8 102 9.60e-21 86.7
MS.gene052630.t1 AT1G02300 31.381 239 132 10 147 362 146 375 3.16e-20 91.3

Find 87 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCTATCTGTCTTTATT+TGG 0.189761 3.1:-62582715 None:intergenic
CCGTTGATGGAACTAATTAT+TGG 0.225728 3.1:+62583365 MS.gene052630:CDS
TTTGAGTACATTAAGCAAAA+AGG 0.295259 3.1:+62582818 MS.gene052630:CDS
ATCAGATCCTCCGGCATCTA+TGG 0.300046 3.1:-62583099 None:intergenic
ACATGACCAACCATGAATTT+AGG 0.309976 3.1:+62582133 MS.gene052630:CDS
TGTCCACAACACCAACAAAA+TGG 0.326241 3.1:+62582074 MS.gene052630:CDS
GAACTCATGGGGAGCGGAAT+GGG 0.328427 3.1:+62583396 MS.gene052630:CDS
CTGAGGACACATCTTTATCT+TGG 0.332566 3.1:-62581942 None:intergenic
AAGCTCCTGCTTCTGTTGAT+TGG 0.348923 3.1:+62582247 MS.gene052630:CDS
CTATTACAGGGAGTATTTAC+TGG 0.367645 3.1:+62583289 MS.gene052630:intron
GCATCTATGGCTACGGATAC+AGG 0.385812 3.1:-62583086 None:intergenic
TCAACTGTTGTAGCTGTTGA+AGG 0.388321 3.1:+62582686 MS.gene052630:CDS
TTGTTAAGTTTCAACTTGTA+AGG 0.389898 3.1:-62582102 None:intergenic
AGGATGCAATGGTGGGCTAA+TGG 0.392108 3.1:+62582787 MS.gene052630:CDS
GATCCATCATTTGCTGTGTA+AGG 0.397020 3.1:-62582866 None:intergenic
GTCCCAGCTGTATCAATTGA+TGG 0.409945 3.1:+62583005 MS.gene052630:CDS
CACTTCCACGTGGCGTGCCT+CGG 0.411657 3.1:-62582197 None:intergenic
GATTGTTCTGTCCATTGCTT+TGG 0.412192 3.1:+62581891 MS.gene052630:CDS
ATCAACAGAAGCAGGAGCTT+TGG 0.419799 3.1:-62582244 None:intergenic
TGACCATCAATTGATACAGC+TGG 0.435646 3.1:-62583008 None:intergenic
GGTGTAGCAATAGTAGGATA+TGG 0.443941 3.1:+62583337 MS.gene052630:CDS
TGATGGTCATGAGACTGTTC+CGG 0.449890 3.1:+62583022 MS.gene052630:CDS
GGAGTCACCACACGGTTTCT+CGG 0.450148 3.1:+62581998 MS.gene052630:CDS
GGATATGGAACAACCGTTGA+TGG 0.454887 3.1:+62583352 MS.gene052630:CDS
CGAGGCACGCCACGTGGAAG+TGG 0.460548 3.1:+62582198 MS.gene052630:CDS
TCATCCTTGGTAGATGATAA+AGG 0.462977 3.1:-62583532 None:intergenic
TAAACCAAATAAAGACAGAT+AGG 0.464117 3.1:+62582711 MS.gene052630:CDS
TTCCTCCAATCAACAGAAGC+AGG 0.475830 3.1:-62582252 None:intergenic
CATAGGTAGTCCTAAATTCA+TGG 0.476124 3.1:-62582143 None:intergenic
CTCCTGCTTCTGTTGATTGG+AGG 0.481655 3.1:+62582250 MS.gene052630:CDS
ATTGGATTGTGAGGAACTCA+TGG 0.493389 3.1:+62583383 MS.gene052630:CDS
AATCATGGTGTAGCAATAGT+AGG 0.495226 3.1:+62583331 MS.gene052630:CDS
GTCACTGAGGTCAAGGATCA+AGG 0.495703 3.1:+62582285 MS.gene052630:CDS
TCTAACAAGGAAGGACTTTG+TGG 0.498260 3.1:+62583454 MS.gene052630:CDS
GTAGATGATAAAGGTCCTGC+TGG 0.507201 3.1:-62583523 None:intergenic
AAACATTCAAAGCTCATCCT+TGG 0.508057 3.1:-62583545 None:intergenic
TACCCTTACACAGCAAATGA+TGG 0.512248 3.1:+62582863 MS.gene052630:CDS
GAATTTAGGACTACCTATGC+TGG 0.513702 3.1:+62582147 MS.gene052630:CDS
GTCCTCAGACAAAAGCTTGT+GGG 0.513806 3.1:+62581957 MS.gene052630:CDS
GGAACTCATGGGGAGCGGAA+TGG 0.524402 3.1:+62583395 MS.gene052630:CDS
AGGACTTTGTGGCATAGCTA+TGG 0.526821 3.1:+62583465 MS.gene052630:CDS
TGTGACAATCAAGAAAATCA+AGG 0.527505 3.1:+62582767 MS.gene052630:CDS
GAAAATCAAGGATGCAATGG+TGG 0.535112 3.1:+62582779 MS.gene052630:CDS
TCCTCCGGCATCTATGGCTA+CGG 0.543132 3.1:-62583093 None:intergenic
GACTACCTATGCTGGATCAA+AGG 0.546319 3.1:+62582155 MS.gene052630:CDS
CAAGAAAATCAAGGATGCAA+TGG 0.548537 3.1:+62582776 MS.gene052630:CDS
AAACTGGAAATCAGATCCTC+CGG 0.552551 3.1:-62583108 None:intergenic
TCTGTTGATTGGAGGAAGAA+AGG 0.553167 3.1:+62582258 MS.gene052630:CDS
GGCTACGGATACAGGTTGGT+TGG 0.553342 3.1:-62583078 None:intergenic
AGGTGCTGTCACTGAGGTCA+AGG 0.558185 3.1:+62582278 MS.gene052630:CDS
ATCCATCATTTGCTGTGTAA+GGG 0.560080 3.1:-62582865 None:intergenic
TGTGGTAAAGAGCTAAATCA+TGG 0.564153 3.1:+62583316 MS.gene052630:CDS
CCAATAATTAGTTCCATCAA+CGG 0.573198 3.1:-62583365 None:intergenic
TGTGGGACTTATACGAGAGA+TGG 0.573304 3.1:+62581974 MS.gene052630:CDS
TTGGATTGTGAGGAACTCAT+GGG 0.574375 3.1:+62583384 MS.gene052630:CDS
AACTCATGGGGAGCGGAATG+GGG 0.577276 3.1:+62583397 MS.gene052630:CDS
GACCATCAATTGATACAGCT+GGG 0.584179 3.1:-62583007 None:intergenic
AAAGCATCTTCATCGTTAGC+CGG 0.584931 3.1:-62583041 None:intergenic
AAATTCATGGTTGGTCATGT+CGG 0.587621 3.1:-62582130 None:intergenic
GGAGCGGAATGGGGTGAACA+AGG 0.588520 3.1:+62583406 MS.gene052630:CDS
ATTAACCTTTGATCCAGCAT+AGG 0.590030 3.1:-62582160 None:intergenic
GGAGTATTTACTGGCGATTG+TGG 0.593617 3.1:+62583298 MS.gene052630:CDS
ATCTTGGAAATCGAAGCTCT+CGG 0.596119 3.1:-62581926 None:intergenic
TACTTCAAGAACCAAAGCAA+TGG 0.600914 3.1:-62581902 None:intergenic
TGTGAGGAACTCATGGGGAG+CGG 0.601438 3.1:+62583390 MS.gene052630:CDS
TGTCCTCAGACAAAAGCTTG+TGG 0.605870 3.1:+62581956 MS.gene052630:CDS
ATGTTCCGAGGCACGCCACG+TGG 0.610728 3.1:+62582192 MS.gene052630:CDS
GCGTGCCTCGGAACATTCTG+TGG 0.611727 3.1:-62582185 None:intergenic
AGGAATGTATCTAACAAGGA+AGG 0.612463 3.1:+62583445 MS.gene052630:CDS
GAACTAATTATTGGATTGTG+AGG 0.613342 3.1:+62583374 MS.gene052630:CDS
GGTAGTCCTAAATTCATGGT+TGG 0.613532 3.1:-62582139 None:intergenic
AAAATCAAGGATGCAATGGT+GGG 0.617377 3.1:+62582780 MS.gene052630:CDS
ATAAGCTCTTGTTCAGACAA+AGG 0.634536 3.1:-62582740 None:intergenic
AAGGTTACATCAGAATGCAA+AGG 0.641547 3.1:+62583425 MS.gene052630:CDS
GCAAAGGAATGTATCTAACA+AGG 0.642601 3.1:+62583441 MS.gene052630:CDS
CTATGGCTACGGATACAGGT+TGG 0.643007 3.1:-62583082 None:intergenic
GGGACTTATACGAGAGATGG+AGG 0.652822 3.1:+62581977 MS.gene052630:CDS
GTATCCGTAGCCATAGATGC+CGG 0.655334 3.1:+62583089 MS.gene052630:CDS
AGGACCTTTATCATCTACCA+AGG 0.670444 3.1:+62583528 MS.gene052630:CDS
AATCACCACAGAATGTTCCG+AGG 0.693791 3.1:+62582180 MS.gene052630:CDS
TCCGTAGCCATAGATGCCGG+AGG 0.697215 3.1:+62583092 MS.gene052630:CDS
GTCAAGGATCAAGGCCAATG+TGG 0.699707 3.1:+62582294 MS.gene052630:CDS
GAGATGGAGGAGTCACCACA+CGG 0.702988 3.1:+62581990 MS.gene052630:CDS
TGGATTGTGAGGAACTCATG+GGG 0.709984 3.1:+62583385 MS.gene052630:CDS
CAAGGTTCCGAGAAACCGTG+TGG 0.716333 3.1:-62582005 None:intergenic
GAAGAAAGGTGCTGTCACTG+AGG 0.722701 3.1:+62582272 MS.gene052630:CDS
ATGAATGTTCCACTTCCACG+TGG 0.756623 3.1:-62582207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTTTTTTATTTTGA+AGG - chr3.1:62583197-62583216 None:intergenic 10.0%
!! AGTGAATTGAATTTATAAAT+AGG - chr3.1:62582472-62582491 None:intergenic 15.0%
!! TAAAAAAGTAAAAAAAGAGA+TGG + chr3.1:62583203-62583222 MS.gene052630:intron 15.0%
!! TAGTATAACTATTTGAAAAT+AGG - chr3.1:62582536-62582555 None:intergenic 15.0%
!!! ATGAACAATTTTTGAATCTT+AGG - chr3.1:62582972-62582991 None:intergenic 20.0%
! TAAACCAAATAAAGACAGAT+AGG + chr3.1:62582711-62582730 MS.gene052630:CDS 25.0%
! TATAATTGACATGCAACTTT+AGG + chr3.1:62582944-62582963 MS.gene052630:intron 25.0%
! TTGTTAAGTTTCAACTTGTA+AGG - chr3.1:62582105-62582124 None:intergenic 25.0%
! TTTGAGTACATTAAGCAAAA+AGG + chr3.1:62582818-62582837 MS.gene052630:CDS 25.0%
!! ATTTTGTATACACCTATTAC+AGG + chr3.1:62583276-62583295 MS.gene052630:intron 25.0%
!! TATTGACTACATAAATGCAT+AGG + chr3.1:62582492-62582511 MS.gene052630:intron 25.0%
!! TTGTGATTAATGTTTTGTAC+AGG + chr3.1:62582647-62582666 MS.gene052630:intron 25.0%
!! TTTTGTATACACCTATTACA+GGG + chr3.1:62583277-62583296 MS.gene052630:intron 25.0%
!!! CTTTTTTTAACTTACCACAT+TGG - chr3.1:62582311-62582330 None:intergenic 25.0%
AAAGCTATAGTGCATAATAG+TGG - chr3.1:62582612-62582631 None:intergenic 30.0%
CCAATAATTAGTTCCATCAA+CGG - chr3.1:62583368-62583387 None:intergenic 30.0%
CTAACCTATCTGTCTTTATT+TGG - chr3.1:62582718-62582737 None:intergenic 30.0%
GAACTAATTATTGGATTGTG+AGG + chr3.1:62583374-62583393 MS.gene052630:CDS 30.0%
TCAAAAATTGTTCATGTTGC+AGG + chr3.1:62582977-62582996 MS.gene052630:intron 30.0%
TGTGACAATCAAGAAAATCA+AGG + chr3.1:62582767-62582786 MS.gene052630:CDS 30.0%
! ATCTGATTTCCAGTTTTACT+CGG + chr3.1:62583115-62583134 MS.gene052630:CDS 30.0%
!! TTTTGGAGGAGTTTTTAACT+GGG - chr3.1:62583501-62583520 None:intergenic 30.0%
!! TTTTTGGAGGAGTTTTTAAC+TGG - chr3.1:62583502-62583521 None:intergenic 30.0%
AAAATCAAGGATGCAATGGT+GGG + chr3.1:62582780-62582799 MS.gene052630:CDS 35.0%
AAGGTTACATCAGAATGCAA+AGG + chr3.1:62583425-62583444 MS.gene052630:CDS 35.0%
AATCATGGTGTAGCAATAGT+AGG + chr3.1:62583331-62583350 MS.gene052630:CDS 35.0%
ACATGACCAACCATGAATTT+AGG + chr3.1:62582133-62582152 MS.gene052630:CDS 35.0%
AGGAATGTATCTAACAAGGA+AGG + chr3.1:62583445-62583464 MS.gene052630:CDS 35.0%
ATAAGCTCTTGTTCAGACAA+AGG - chr3.1:62582743-62582762 None:intergenic 35.0%
ATTAACCTTTGATCCAGCAT+AGG - chr3.1:62582163-62582182 None:intergenic 35.0%
ATTCTCTTGTGTCAATAGAG+AGG - chr3.1:62583161-62583180 None:intergenic 35.0%
CAAGAAAATCAAGGATGCAA+TGG + chr3.1:62582776-62582795 MS.gene052630:CDS 35.0%
CAGTAAATACTCCCTGTAAT+AGG - chr3.1:62583291-62583310 None:intergenic 35.0%
CATAGGTAGTCCTAAATTCA+TGG - chr3.1:62582146-62582165 None:intergenic 35.0%
GAGTACATTAAGCAAAAAGG+TGG + chr3.1:62582821-62582840 MS.gene052630:CDS 35.0%
GCAAAGGAATGTATCTAACA+AGG + chr3.1:62583441-62583460 MS.gene052630:CDS 35.0%
GTTGCAAACCTGAAACTTAA+AGG + chr3.1:62582428-62582447 MS.gene052630:intron 35.0%
TACTTCAAGAACCAAAGCAA+TGG - chr3.1:62581905-62581924 None:intergenic 35.0%
TCATCCTTGGTAGATGATAA+AGG - chr3.1:62583535-62583554 None:intergenic 35.0%
TGTGGTAAAGAGCTAAATCA+TGG + chr3.1:62583316-62583335 MS.gene052630:CDS 35.0%
! AAATTCATGGTTGGTCATGT+CGG - chr3.1:62582133-62582152 None:intergenic 35.0%
! CCGTTGATGGAACTAATTAT+TGG + chr3.1:62583365-62583384 MS.gene052630:CDS 35.0%
! GTAAGGCTTATCCATTTTGT+TGG - chr3.1:62582088-62582107 None:intergenic 35.0%
! TTTTTACCTCCGAGTAAAAC+TGG - chr3.1:62583127-62583146 None:intergenic 35.0%
!! ATCCATCATTTGCTGTGTAA+GGG - chr3.1:62582868-62582887 None:intergenic 35.0%
!! CTATTACAGGGAGTATTTAC+TGG + chr3.1:62583289-62583308 MS.gene052630:intron 35.0%
!!! TATCCATTTTGTTGGTGTTG+TGG - chr3.1:62582080-62582099 None:intergenic 35.0%
AAACTGGAAATCAGATCCTC+CGG - chr3.1:62583111-62583130 None:intergenic 40.0%
AGGACCTTTATCATCTACCA+AGG + chr3.1:62583528-62583547 MS.gene052630:CDS 40.0%
ATCTTGGAAATCGAAGCTCT+CGG - chr3.1:62581929-62581948 None:intergenic 40.0%
ATTGGATTGTGAGGAACTCA+TGG + chr3.1:62583383-62583402 MS.gene052630:CDS 40.0%
CTGAGGACACATCTTTATCT+TGG - chr3.1:62581945-62581964 None:intergenic 40.0%
GAAAATCAAGGATGCAATGG+TGG + chr3.1:62582779-62582798 MS.gene052630:CDS 40.0%
GACACCATCTGATCAAAGAT+CGG + chr3.1:62582382-62582401 MS.gene052630:intron 40.0%
GACCATCAATTGATACAGCT+GGG - chr3.1:62583010-62583029 None:intergenic 40.0%
GATTGTTCTGTCCATTGCTT+TGG + chr3.1:62581891-62581910 MS.gene052630:CDS 40.0%
GGTAGTCCTAAATTCATGGT+TGG - chr3.1:62582142-62582161 None:intergenic 40.0%
GGTGTAGCAATAGTAGGATA+TGG + chr3.1:62583337-62583356 MS.gene052630:CDS 40.0%
TACCCTTACACAGCAAATGA+TGG + chr3.1:62582863-62582882 MS.gene052630:CDS 40.0%
TCAACTGTTGTAGCTGTTGA+AGG + chr3.1:62582686-62582705 MS.gene052630:CDS 40.0%
TCATCCGATCTTTGATCAGA+TGG - chr3.1:62582389-62582408 None:intergenic 40.0%
TCTAACAAGGAAGGACTTTG+TGG + chr3.1:62583454-62583473 MS.gene052630:CDS 40.0%
TGACCATCAATTGATACAGC+TGG - chr3.1:62583011-62583030 None:intergenic 40.0%
TGTCCACAACACCAACAAAA+TGG + chr3.1:62582074-62582093 MS.gene052630:CDS 40.0%
TTGGATTGTGAGGAACTCAT+GGG + chr3.1:62583384-62583403 MS.gene052630:CDS 40.0%
! AAAGCATCTTCATCGTTAGC+CGG - chr3.1:62583044-62583063 None:intergenic 40.0%
! GAATTTAGGACTACCTATGC+TGG + chr3.1:62582147-62582166 MS.gene052630:CDS 40.0%
! GTTTTGTACAGGTAGTTGCT+GGG + chr3.1:62582658-62582677 MS.gene052630:intron 40.0%
! TAAAGGTCCTGCTGGATTTT+TGG - chr3.1:62583518-62583537 None:intergenic 40.0%
! TCTGTTGATTGGAGGAAGAA+AGG + chr3.1:62582258-62582277 MS.gene052630:CDS 40.0%
! TGATTTCCAGTTTTACTCGG+AGG + chr3.1:62583118-62583137 MS.gene052630:CDS 40.0%
! TGTTTTGTACAGGTAGTTGC+TGG + chr3.1:62582657-62582676 MS.gene052630:intron 40.0%
!! AGCGCTTTTGTTTCTCATCA+AGG - chr3.1:62582026-62582045 None:intergenic 40.0%
!! GATCCATCATTTGCTGTGTA+AGG - chr3.1:62582869-62582888 None:intergenic 40.0%
AACTCCTCCAAAAATCCAGC+AGG + chr3.1:62583508-62583527 MS.gene052630:CDS 45.0%
AAGCTCCTGCTTCTGTTGAT+TGG + chr3.1:62582247-62582266 MS.gene052630:CDS 45.0%
AATCACCACAGAATGTTCCG+AGG + chr3.1:62582180-62582199 MS.gene052630:CDS 45.0%
AGGACTTTGTGGCATAGCTA+TGG + chr3.1:62583465-62583484 MS.gene052630:CDS 45.0%
ATCAACAGAAGCAGGAGCTT+TGG - chr3.1:62582247-62582266 None:intergenic 45.0%
ATGAATGTTCCACTTCCACG+TGG - chr3.1:62582210-62582229 None:intergenic 45.0%
CCTGAAACTTAAAGGACTCG+TGG + chr3.1:62582436-62582455 MS.gene052630:intron 45.0%
GACTACCTATGCTGGATCAA+AGG + chr3.1:62582155-62582174 MS.gene052630:CDS 45.0%
GGATATGGAACAACCGTTGA+TGG + chr3.1:62583352-62583371 MS.gene052630:CDS 45.0%
GTAGATGATAAAGGTCCTGC+TGG - chr3.1:62583526-62583545 None:intergenic 45.0%
GTCCCAGCTGTATCAATTGA+TGG + chr3.1:62583005-62583024 MS.gene052630:CDS 45.0%
GTCCTCAGACAAAAGCTTGT+GGG + chr3.1:62581957-62581976 MS.gene052630:CDS 45.0%
TGATGGTCATGAGACTGTTC+CGG + chr3.1:62583022-62583041 MS.gene052630:CDS 45.0%
TGGATTGTGAGGAACTCATG+GGG + chr3.1:62583385-62583404 MS.gene052630:CDS 45.0%
TGTCCTCAGACAAAAGCTTG+TGG + chr3.1:62581956-62581975 MS.gene052630:CDS 45.0%
TGTGGGACTTATACGAGAGA+TGG + chr3.1:62581974-62581993 MS.gene052630:CDS 45.0%
TTCCTCCAATCAACAGAAGC+AGG - chr3.1:62582255-62582274 None:intergenic 45.0%
! CCACGAGTCCTTTAAGTTTC+AGG - chr3.1:62582439-62582458 None:intergenic 45.0%
! GGAGTATTTACTGGCGATTG+TGG + chr3.1:62583298-62583317 MS.gene052630:CDS 45.0%
!! GGAGGAGTTTTTAACTGGGT+AGG - chr3.1:62583497-62583516 None:intergenic 45.0%
!! AAAAATATAATATATAACTT+AGG - chr3.1:62582589-62582608 None:intergenic 5.0%
ATCAGATCCTCCGGCATCTA+TGG - chr3.1:62583102-62583121 None:intergenic 50.0%
CTATGGCTACGGATACAGGT+TGG - chr3.1:62583085-62583104 None:intergenic 50.0%
GCATCTATGGCTACGGATAC+AGG - chr3.1:62583089-62583108 None:intergenic 50.0%
GGGACTTATACGAGAGATGG+AGG + chr3.1:62581977-62581996 MS.gene052630:CDS 50.0%
GTATCCGTAGCCATAGATGC+CGG + chr3.1:62583089-62583108 MS.gene052630:CDS 50.0%
GTCAAGGATCAAGGCCAATG+TGG + chr3.1:62582294-62582313 MS.gene052630:CDS 50.0%
GTCACTGAGGTCAAGGATCA+AGG + chr3.1:62582285-62582304 MS.gene052630:CDS 50.0%
! CTCCTGCTTCTGTTGATTGG+AGG + chr3.1:62582250-62582269 MS.gene052630:CDS 50.0%
! CTGTTGACTGCGTGAATGCA+TGG - chr3.1:62582359-62582378 None:intergenic 50.0%
! GTCCCACAAGCTTTTGTCTG+AGG - chr3.1:62581962-62581981 None:intergenic 50.0%
!! AGGATGCAATGGTGGGCTAA+TGG + chr3.1:62582787-62582806 MS.gene052630:CDS 50.0%
!! AGGTCCTGCTGGATTTTTGG+AGG - chr3.1:62583515-62583534 None:intergenic 50.0%
!! GAAGAAAGGTGCTGTCACTG+AGG + chr3.1:62582272-62582291 MS.gene052630:CDS 50.0%
AACTCATGGGGAGCGGAATG+GGG + chr3.1:62583397-62583416 MS.gene052630:CDS 55.0%
CAAGGTTCCGAGAAACCGTG+TGG - chr3.1:62582008-62582027 None:intergenic 55.0%
GAACTCATGGGGAGCGGAAT+GGG + chr3.1:62583396-62583415 MS.gene052630:CDS 55.0%
GAGATGGAGGAGTCACCACA+CGG + chr3.1:62581990-62582009 MS.gene052630:CDS 55.0%
GGAGTCACCACACGGTTTCT+CGG + chr3.1:62581998-62582017 MS.gene052630:CDS 55.0%
TCCTCCGGCATCTATGGCTA+CGG - chr3.1:62583096-62583115 None:intergenic 55.0%
TGTGAGGAACTCATGGGGAG+CGG + chr3.1:62583390-62583409 MS.gene052630:CDS 55.0%
! AGGTGCTGTCACTGAGGTCA+AGG + chr3.1:62582278-62582297 MS.gene052630:CDS 55.0%
!! GGCTACGGATACAGGTTGGT+TGG - chr3.1:62583081-62583100 None:intergenic 55.0%
GCGTGCCTCGGAACATTCTG+TGG - chr3.1:62582188-62582207 None:intergenic 60.0%
GGAACTCATGGGGAGCGGAA+TGG + chr3.1:62583395-62583414 MS.gene052630:CDS 60.0%
GGAGCGGAATGGGGTGAACA+AGG + chr3.1:62583406-62583425 MS.gene052630:CDS 60.0%
TCCGTAGCCATAGATGCCGG+AGG + chr3.1:62583092-62583111 MS.gene052630:CDS 60.0%
ATGTTCCGAGGCACGCCACG+TGG + chr3.1:62582192-62582211 MS.gene052630:CDS 65.0%
CACTTCCACGTGGCGTGCCT+CGG - chr3.1:62582200-62582219 None:intergenic 65.0%
CGAGGCACGCCACGTGGAAG+TGG + chr3.1:62582198-62582217 MS.gene052630:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 62581868 62583561 62581868 ID=MS.gene052630
chr3.1 mRNA 62581868 62583561 62581868 ID=MS.gene052630.t1;Parent=MS.gene052630
chr3.1 exon 62581868 62582315 62581868 ID=MS.gene052630.t1.exon1;Parent=MS.gene052630.t1
chr3.1 CDS 62581868 62582315 62581868 ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1
chr3.1 exon 62582669 62582904 62582669 ID=MS.gene052630.t1.exon2;Parent=MS.gene052630.t1
chr3.1 CDS 62582669 62582904 62582669 ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1
chr3.1 exon 62582999 62583139 62582999 ID=MS.gene052630.t1.exon3;Parent=MS.gene052630.t1
chr3.1 CDS 62582999 62583139 62582999 ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1
chr3.1 exon 62583298 62583561 62583298 ID=MS.gene052630.t1.exon4;Parent=MS.gene052630.t1
chr3.1 CDS 62583298 62583561 62583298 ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1
Gene Sequence

>MS.gene052630

ATGGAAACTAAGAATCTATTGTTGATTGTTCTGTCCATTGCTTTGGTTCTTGAAGTATCCGAGAGCTTCGATTTCCAAGATAAAGATGTGTCCTCAGACAAAAGCTTGTGGGACTTATACGAGAGATGGAGGAGTCACCACACGGTTTCTCGGAACCTTGATGAGAAACAAAAGCGCTTTAACGTGTTCAAAACAAACGTGATGCATGTCCACAACACCAACAAAATGGATAAGCCTTACAAGTTGAAACTTAACAAGTTTGCCGACATGACCAACCATGAATTTAGGACTACCTATGCTGGATCAAAGGTTAATCACCACAGAATGTTCCGAGGCACGCCACGTGGAAGTGGAACATTCATGTATGAGAATTTCACCAAAGCTCCTGCTTCTGTTGATTGGAGGAAGAAAGGTGCTGTCACTGAGGTCAAGGATCAAGGCCAATGTGGTAAGTTAAAAAAAGTTACTATTTAGATTCTTTAACATCACCATGCATTCACGCAGTCAACAGTTTGACACCATCTGATCAAAGATCGGATGACTCTTGTTACGAGCAATCTGTTGCAAACCTGAAACTTAAAGGACTCGTGGTGTAATTTAGCCTATTTATAAATTCAATTCACTTATTGACTACATAAATGCATAGGATTTTTGACTGAAGTCAACCTATTTTCAAATAGTTATACTAGTCATTAATAATCATATTCATAGAGCTTAACCTAAGTTATATATTATATTTTTCCACTATTATGCACTATAGCTTTTTATAACATTGTTGTTTGTGATTAATGTTTTGTACAGGTAGTTGCTGGGCTTTTTCAACTGTTGTAGCTGTTGAAGGCATAAACCAAATAAAGACAGATAGGTTAGTGCCTTTGTCTGAACAAGAGCTTATAGATTGTGACAATCAAGAAAATCAAGGATGCAATGGTGGGCTAATGGAATATGCTTTTGAGTACATTAAGCAAAAAGGTGGCTTAACAACAGAAAGCTATTACCCTTACACAGCAAATGATGGATCATGTGATGCAACAAAAGTGAGTAAAAGATGCTAAACTTCTATTGAAAATTTTTAATATAATTGACATGCAACTTTAGGAACCTAAGATTCAAAAATTGTTCATGTTGCAGGAAAATGTCCCAGCTGTATCAATTGATGGTCATGAGACTGTTCCGGCTAACGATGAAGATGCTTTGCTCAAAGCTGTTGCCAACCAACCTGTATCCGTAGCCATAGATGCCGGAGGATCTGATTTCCAGTTTTACTCGGAGGTAAAAATGAGAATGAATCCTCTCTATTGACACAAGAGAATAATGCAATCTAAACCTTCAAAATAAAAAAGTAAAAAAAGAGATGGAAGAAATATGCTATTATTAGCATTCAATTTTGAAACTAATGTGTATCTTAATTTTGTATACACCTATTACAGGGAGTATTTACTGGCGATTGTGGTAAAGAGCTAAATCATGGTGTAGCAATAGTAGGATATGGAACAACCGTTGATGGAACTAATTATTGGATTGTGAGGAACTCATGGGGAGCGGAATGGGGTGAACAAGGTTACATCAGAATGCAAAGGAATGTATCTAACAAGGAAGGACTTTGTGGCATAGCTATGGAAGCTTCCTACCCAGTTAAAAACTCCTCCAAAAATCCAGCAGGACCTTTATCATCTACCAAGGATGAGCTTTGA

Protein sequence

>MS.gene052630.t1

METKNLLLIVLSIALVLEVSESFDFQDKDVSSDKSLWDLYERWRSHHTVSRNLDEKQKRFNVFKTNVMHVHNTNKMDKPYKLKLNKFADMTNHEFRTTYAGSKVNHHRMFRGTPRGSGTFMYENFTKAPASVDWRKKGAVTEVKDQGQCGSCWAFSTVVAVEGINQIKTDRLVPLSEQELIDCDNQENQGCNGGLMEYAFEYIKQKGGLTTESYYPYTANDGSCDATKENVPAVSIDGHETVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCGKELNHGVAIVGYGTTVDGTNYWIVRNSWGAEWGEQGYIRMQRNVSNKEGLCGIAMEASYPVKNSSKNPAGPLSSTKDEL