Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052630.t1 | XP_013460973.1 | 96.4 | 362 | 13 | 0 | 1 | 362 | 1 | 362 | 1.10E-202 | 715.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052630.t1 | P12412 | 82.0 | 362 | 65 | 0 | 1 | 362 | 1 | 362 | 7.5e-176 | 617.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052630.t1 | G8A2F7 | 96.4 | 362 | 13 | 0 | 1 | 362 | 1 | 362 | 7.9e-203 | 715.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049227 | MS.gene052630 | 0.812226 | 4.72E-51 | -1.69E-46 |
MS.gene049807 | MS.gene052630 | 0.80159 | 8.38E-49 | -1.69E-46 |
MS.gene052628 | MS.gene052630 | 0.934548 | 3.40E-96 | -1.69E-46 |
MS.gene052630 | MS.gene05894 | 0.813157 | 2.95E-51 | -1.69E-46 |
MS.gene052630 | MS.gene061100 | 0.800245 | 1.58E-48 | -1.69E-46 |
MS.gene052630 | MS.gene061812 | 0.807811 | 4.21E-50 | -1.69E-46 |
MS.gene052630 | MS.gene06341 | 0.810585 | 1.07E-50 | -1.69E-46 |
MS.gene052630 | MS.gene064518 | 0.80224 | 6.16E-49 | -1.69E-46 |
MS.gene052630 | MS.gene074317 | 0.817076 | 3.98E-52 | -1.69E-46 |
MS.gene052630 | MS.gene24050 | 0.804944 | 1.69E-49 | -1.69E-46 |
MS.gene052630 | MS.gene27206 | 0.83707 | 6.45E-57 | -1.69E-46 |
MS.gene052630 | MS.gene29082 | 0.947645 | 4.49E-106 | -1.69E-46 |
MS.gene052630 | MS.gene31222 | 0.84306 | 1.77E-58 | -1.69E-46 |
MS.gene052630 | MS.gene33059 | 0.803705 | 3.07E-49 | -1.69E-46 |
MS.gene052630 | MS.gene34164 | 0.807156 | 5.80E-50 | -1.69E-46 |
MS.gene052630 | MS.gene34266 | 0.816098 | 6.59E-52 | -1.69E-46 |
MS.gene052630 | MS.gene37106 | 0.829704 | 4.44E-55 | -1.69E-46 |
MS.gene052630 | MS.gene40949 | 0.802228 | 6.20E-49 | -1.69E-46 |
MS.gene052630 | MS.gene41860 | 0.805369 | 1.38E-49 | -1.69E-46 |
MS.gene052630 | MS.gene47768 | 0.809289 | 2.04E-50 | -1.69E-46 |
MS.gene052630 | MS.gene49754 | 0.800653 | 1.30E-48 | -1.69E-46 |
MS.gene052630 | MS.gene63573 | 0.801416 | 9.10E-49 | -1.69E-46 |
MS.gene052630 | MS.gene67631 | 0.800848 | 1.19E-48 | -1.69E-46 |
MS.gene052630 | MS.gene76890 | 0.815703 | 8.07E-52 | -1.69E-46 |
MS.gene052630 | MS.gene78715 | 0.924185 | 9.87E-90 | -1.69E-46 |
MS.gene052630 | MS.gene82912 | 0.807878 | 4.08E-50 | -1.69E-46 |
MS.gene052630 | MS.gene82993 | 0.802006 | 6.88E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052630.t1 | MTR_3g075390 | 96.409 | 362 | 13 | 0 | 1 | 362 | 1 | 362 | 0.0 | 737 |
MS.gene052630.t1 | MTR_4g104370 | 76.243 | 362 | 84 | 2 | 1 | 362 | 1 | 360 | 0.0 | 592 |
MS.gene052630.t1 | MTR_4g080700 | 57.692 | 312 | 121 | 7 | 35 | 343 | 35 | 338 | 5.70e-125 | 363 |
MS.gene052630.t1 | MTR_4g080730 | 57.051 | 312 | 123 | 7 | 35 | 343 | 35 | 338 | 1.85e-124 | 362 |
MS.gene052630.t1 | MTR_4g079770 | 52.586 | 348 | 155 | 7 | 1 | 343 | 1 | 343 | 2.47e-124 | 362 |
MS.gene052630.t1 | MTR_5g022560 | 55.660 | 318 | 127 | 6 | 33 | 343 | 32 | 342 | 6.24e-124 | 360 |
MS.gene052630.t1 | MTR_4g047610 | 57.962 | 314 | 121 | 7 | 38 | 344 | 33 | 342 | 1.44e-123 | 360 |
MS.gene052630.t1 | MTR_4g079470 | 55.312 | 320 | 134 | 6 | 28 | 343 | 29 | 343 | 1.92e-123 | 359 |
MS.gene052630.t1 | MTR_4g107930 | 50.568 | 352 | 156 | 7 | 1 | 343 | 1 | 343 | 3.69e-123 | 358 |
MS.gene052630.t1 | MTR_1g107550 | 55.215 | 326 | 141 | 5 | 23 | 345 | 33 | 356 | 4.10e-122 | 360 |
MS.gene052630.t1 | MTR_4g079800 | 53.395 | 324 | 134 | 6 | 28 | 343 | 29 | 343 | 1.25e-121 | 355 |
MS.gene052630.t1 | MTR_3g116080 | 51.884 | 345 | 155 | 5 | 7 | 345 | 9 | 348 | 1.49e-121 | 355 |
MS.gene052630.t1 | MTR_1g018840 | 51.576 | 349 | 160 | 6 | 6 | 346 | 16 | 363 | 1.62e-121 | 358 |
MS.gene052630.t1 | MTR_4g094918 | 51.320 | 341 | 151 | 5 | 8 | 345 | 14 | 342 | 2.18e-121 | 355 |
MS.gene052630.t1 | MTR_1g018840 | 51.576 | 349 | 160 | 6 | 6 | 346 | 16 | 363 | 4.32e-121 | 358 |
MS.gene052630.t1 | MTR_3g102220 | 51.989 | 352 | 156 | 8 | 6 | 345 | 12 | 362 | 3.48e-120 | 355 |
MS.gene052630.t1 | MTR_2g075830 | 54.227 | 343 | 142 | 7 | 6 | 343 | 7 | 339 | 1.03e-118 | 347 |
MS.gene052630.t1 | MTR_4g079440 | 50.000 | 344 | 156 | 6 | 6 | 344 | 12 | 344 | 8.31e-117 | 342 |
MS.gene052630.t1 | MTR_2g090890 | 49.138 | 348 | 165 | 5 | 1 | 346 | 1 | 338 | 6.81e-115 | 337 |
MS.gene052630.t1 | MTR_4g080360 | 51.792 | 307 | 144 | 3 | 40 | 344 | 37 | 341 | 7.07e-113 | 332 |
MS.gene052630.t1 | MTR_2g083930 | 46.313 | 339 | 171 | 5 | 10 | 344 | 12 | 343 | 2.39e-105 | 313 |
MS.gene052630.t1 | MTR_7g078600 | 46.483 | 327 | 158 | 7 | 25 | 347 | 27 | 340 | 1.48e-99 | 298 |
MS.gene052630.t1 | MTR_3g112430 | 48.875 | 311 | 156 | 3 | 39 | 347 | 35 | 344 | 5.89e-98 | 298 |
MS.gene052630.t1 | MTR_7g079230 | 45.588 | 340 | 170 | 7 | 7 | 343 | 7 | 334 | 7.02e-98 | 294 |
MS.gene052630.t1 | MTR_2g016180 | 43.636 | 330 | 168 | 11 | 25 | 345 | 36 | 356 | 8.88e-83 | 260 |
MS.gene052630.t1 | MTR_2g016270 | 43.161 | 329 | 156 | 10 | 25 | 345 | 36 | 341 | 2.02e-82 | 259 |
MS.gene052630.t1 | MTR_2g015850 | 44.966 | 298 | 158 | 5 | 48 | 344 | 71 | 363 | 2.80e-81 | 252 |
MS.gene052630.t1 | MTR_4g065077 | 43.380 | 355 | 175 | 13 | 6 | 345 | 14 | 357 | 4.13e-76 | 239 |
MS.gene052630.t1 | MTR_4g125300 | 44.295 | 298 | 146 | 9 | 53 | 344 | 65 | 348 | 2.33e-73 | 231 |
MS.gene052630.t1 | MTR_2g015920 | 39.826 | 344 | 187 | 12 | 27 | 361 | 41 | 373 | 7.55e-73 | 231 |
MS.gene052630.t1 | MTR_8g086470 | 41.714 | 350 | 172 | 12 | 6 | 345 | 30 | 357 | 1.43e-68 | 219 |
MS.gene052630.t1 | MTR_2g015930 | 37.978 | 366 | 186 | 16 | 6 | 345 | 9 | 359 | 1.62e-65 | 212 |
MS.gene052630.t1 | MTR_2g067900 | 41.860 | 301 | 158 | 11 | 55 | 344 | 32 | 326 | 1.31e-62 | 203 |
MS.gene052630.t1 | MTR_1g023210 | 39.465 | 299 | 153 | 9 | 54 | 336 | 66 | 352 | 2.29e-61 | 201 |
MS.gene052630.t1 | MTR_4g071060 | 37.793 | 299 | 157 | 8 | 54 | 336 | 63 | 348 | 1.29e-58 | 194 |
MS.gene052630.t1 | MTR_2g067560 | 40.123 | 324 | 153 | 15 | 40 | 338 | 16 | 323 | 1.89e-58 | 203 |
MS.gene052630.t1 | MTR_2g064475 | 37.609 | 343 | 164 | 13 | 40 | 342 | 16 | 348 | 2.17e-57 | 190 |
MS.gene052630.t1 | MTR_1g023810 | 42.731 | 227 | 122 | 6 | 119 | 342 | 40 | 261 | 2.82e-56 | 185 |
MS.gene052630.t1 | MTR_7g078630 | 42.652 | 279 | 112 | 10 | 40 | 304 | 706 | 950 | 3.55e-54 | 192 |
MS.gene052630.t1 | MTR_1g094135 | 32.258 | 341 | 196 | 10 | 15 | 336 | 34 | 358 | 1.57e-52 | 179 |
MS.gene052630.t1 | MTR_2g066980 | 34.853 | 307 | 143 | 11 | 55 | 343 | 50 | 317 | 2.99e-52 | 176 |
MS.gene052630.t1 | MTR_4g072790 | 31.805 | 349 | 188 | 9 | 1 | 336 | 1 | 312 | 7.17e-44 | 154 |
MS.gene052630.t1 | MTR_2g015840 | 31.429 | 315 | 144 | 8 | 32 | 343 | 25 | 270 | 1.06e-43 | 152 |
MS.gene052630.t1 | MTR_7g078580 | 64.646 | 99 | 34 | 1 | 246 | 344 | 4 | 101 | 5.23e-43 | 145 |
MS.gene052630.t1 | MTR_4g072340 | 34.021 | 291 | 147 | 9 | 54 | 336 | 63 | 316 | 7.32e-41 | 146 |
MS.gene052630.t1 | MTR_4g073660 | 34.364 | 291 | 146 | 10 | 54 | 336 | 62 | 315 | 7.78e-41 | 146 |
MS.gene052630.t1 | MTR_7g079130 | 64.835 | 91 | 32 | 0 | 254 | 344 | 7 | 97 | 5.84e-38 | 132 |
MS.gene052630.t1 | MTR_2g047960 | 77.215 | 79 | 18 | 0 | 137 | 215 | 7 | 85 | 1.07e-35 | 125 |
MS.gene052630.t1 | MTR_1g025450 | 41.954 | 174 | 77 | 7 | 127 | 296 | 54 | 207 | 1.97e-32 | 127 |
MS.gene052630.t1 | MTR_2g016380 | 45.902 | 122 | 59 | 4 | 228 | 345 | 18 | 136 | 3.28e-28 | 110 |
MS.gene052630.t1 | MTR_7g111060 | 27.536 | 276 | 164 | 11 | 86 | 336 | 66 | 330 | 4.94e-24 | 101 |
MS.gene052630.t1 | MTR_7g111050 | 30.738 | 244 | 137 | 10 | 130 | 350 | 106 | 340 | 5.58e-23 | 99.0 |
MS.gene052630.t1 | MTR_3g029560 | 32.547 | 212 | 114 | 8 | 139 | 344 | 49 | 237 | 7.21e-21 | 90.5 |
MS.gene052630.t1 | MTR_7g079260 | 56.944 | 72 | 15 | 1 | 270 | 341 | 7 | 62 | 2.22e-20 | 85.5 |
MS.gene052630.t1 | MTR_7g078310 | 34.857 | 175 | 95 | 6 | 48 | 217 | 84 | 244 | 7.28e-19 | 85.5 |
MS.gene052630.t1 | MTR_8g087510 | 41.538 | 130 | 70 | 5 | 169 | 296 | 23 | 148 | 7.60e-19 | 83.6 |
MS.gene052630.t1 | MTR_7g111050 | 29.648 | 199 | 117 | 7 | 130 | 307 | 101 | 297 | 2.96e-15 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052630.t1 | AT5G50260 | 70.833 | 360 | 104 | 1 | 4 | 362 | 2 | 361 | 0.0 | 556 |
MS.gene052630.t1 | AT3G48340 | 66.759 | 361 | 117 | 2 | 4 | 362 | 2 | 361 | 0.0 | 514 |
MS.gene052630.t1 | AT3G48350 | 63.611 | 360 | 129 | 2 | 4 | 362 | 2 | 360 | 2.98e-176 | 494 |
MS.gene052630.t1 | AT3G48350 | 63.406 | 276 | 100 | 1 | 4 | 278 | 2 | 277 | 6.47e-133 | 382 |
MS.gene052630.t1 | AT4G35350 | 51.862 | 349 | 158 | 4 | 3 | 345 | 9 | 353 | 1.86e-122 | 357 |
MS.gene052630.t1 | AT1G20850 | 54.658 | 322 | 142 | 3 | 25 | 345 | 36 | 354 | 3.81e-122 | 357 |
MS.gene052630.t1 | AT1G47128 | 48.991 | 347 | 166 | 4 | 6 | 346 | 13 | 354 | 1.99e-117 | 348 |
MS.gene052630.t1 | AT5G43060 | 50.286 | 350 | 158 | 5 | 6 | 345 | 11 | 354 | 2.58e-117 | 348 |
MS.gene052630.t1 | AT3G19390 | 48.159 | 353 | 174 | 6 | 1 | 350 | 5 | 351 | 1.17e-115 | 343 |
MS.gene052630.t1 | AT5G45890 | 47.714 | 350 | 165 | 7 | 6 | 343 | 1 | 344 | 2.72e-115 | 338 |
MS.gene052630.t1 | AT4G36880 | 51.368 | 329 | 149 | 6 | 32 | 351 | 41 | 367 | 7.85e-114 | 336 |
MS.gene052630.t1 | AT1G06260 | 48.571 | 350 | 164 | 7 | 1 | 345 | 5 | 343 | 1.43e-107 | 319 |
MS.gene052630.t1 | AT3G19400 | 51.592 | 314 | 142 | 7 | 39 | 347 | 43 | 351 | 1.44e-107 | 320 |
MS.gene052630.t1 | AT4G11310 | 46.797 | 359 | 170 | 8 | 3 | 347 | 4 | 355 | 1.36e-105 | 315 |
MS.gene052630.t1 | AT4G11320 | 46.499 | 357 | 169 | 8 | 6 | 347 | 13 | 362 | 2.96e-103 | 309 |
MS.gene052630.t1 | AT4G11320 | 46.499 | 357 | 169 | 8 | 6 | 347 | 13 | 362 | 2.96e-103 | 309 |
MS.gene052630.t1 | AT2G27420 | 45.533 | 347 | 174 | 5 | 6 | 344 | 8 | 347 | 3.98e-99 | 298 |
MS.gene052630.t1 | AT4G23520 | 46.835 | 316 | 158 | 6 | 39 | 350 | 46 | 355 | 1.01e-98 | 297 |
MS.gene052630.t1 | AT1G09850 | 48.710 | 310 | 152 | 4 | 38 | 345 | 30 | 334 | 1.26e-98 | 299 |
MS.gene052630.t1 | AT3G49340 | 44.118 | 340 | 183 | 5 | 9 | 344 | 4 | 340 | 1.73e-97 | 293 |
MS.gene052630.t1 | AT2G34080 | 44.348 | 345 | 181 | 6 | 6 | 344 | 5 | 344 | 4.38e-94 | 285 |
MS.gene052630.t1 | AT1G29090 | 44.444 | 360 | 169 | 11 | 1 | 344 | 10 | 354 | 2.35e-90 | 275 |
MS.gene052630.t1 | AT4G35350 | 49.645 | 282 | 132 | 4 | 3 | 278 | 9 | 286 | 5.14e-88 | 267 |
MS.gene052630.t1 | AT3G43960 | 45.538 | 325 | 161 | 11 | 39 | 354 | 40 | 357 | 5.59e-88 | 270 |
MS.gene052630.t1 | AT1G29080 | 41.311 | 351 | 193 | 8 | 1 | 344 | 1 | 345 | 1.42e-87 | 268 |
MS.gene052630.t1 | AT1G29110 | 41.693 | 319 | 165 | 7 | 32 | 344 | 30 | 333 | 1.69e-78 | 244 |
MS.gene052630.t1 | AT3G19400 | 50.000 | 240 | 111 | 6 | 39 | 273 | 43 | 278 | 6.12e-72 | 226 |
MS.gene052630.t1 | AT5G60360 | 42.333 | 300 | 153 | 9 | 51 | 344 | 71 | 356 | 5.16e-70 | 223 |
MS.gene052630.t1 | AT3G45310 | 41.391 | 302 | 153 | 10 | 51 | 344 | 71 | 356 | 1.32e-67 | 217 |
MS.gene052630.t1 | AT5G60360 | 42.000 | 300 | 153 | 10 | 51 | 344 | 71 | 355 | 1.77e-67 | 217 |
MS.gene052630.t1 | AT3G45310 | 41.060 | 302 | 153 | 11 | 51 | 344 | 71 | 355 | 4.49e-65 | 211 |
MS.gene052630.t1 | AT5G60360 | 42.143 | 280 | 146 | 8 | 51 | 324 | 71 | 340 | 7.70e-65 | 210 |
MS.gene052630.t1 | AT2G21430 | 34.091 | 352 | 198 | 10 | 5 | 336 | 12 | 349 | 4.52e-61 | 200 |
MS.gene052630.t1 | AT4G39090 | 37.458 | 299 | 159 | 8 | 54 | 336 | 66 | 352 | 1.22e-57 | 191 |
MS.gene052630.t1 | AT3G54940 | 38.127 | 299 | 159 | 9 | 54 | 336 | 66 | 354 | 2.62e-55 | 185 |
MS.gene052630.t1 | AT4G16190 | 37.919 | 298 | 159 | 9 | 55 | 336 | 71 | 358 | 9.28e-54 | 181 |
MS.gene052630.t1 | AT3G54940 | 38.140 | 215 | 121 | 4 | 54 | 260 | 66 | 276 | 4.10e-39 | 140 |
MS.gene052630.t1 | AT1G02305 | 27.596 | 337 | 209 | 11 | 50 | 362 | 33 | 358 | 1.09e-26 | 109 |
MS.gene052630.t1 | AT4G01610 | 29.352 | 293 | 166 | 13 | 85 | 350 | 65 | 343 | 3.27e-23 | 99.8 |
MS.gene052630.t1 | AT4G01610 | 28.669 | 293 | 168 | 13 | 85 | 350 | 65 | 343 | 3.05e-21 | 94.0 |
MS.gene052630.t1 | AT2G22160 | 46.465 | 99 | 49 | 1 | 53 | 151 | 8 | 102 | 9.60e-21 | 86.7 |
MS.gene052630.t1 | AT1G02300 | 31.381 | 239 | 132 | 10 | 147 | 362 | 146 | 375 | 3.16e-20 | 91.3 |
Find 87 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAACCTATCTGTCTTTATT+TGG | 0.189761 | 3.1:-62582715 | None:intergenic |
CCGTTGATGGAACTAATTAT+TGG | 0.225728 | 3.1:+62583365 | MS.gene052630:CDS |
TTTGAGTACATTAAGCAAAA+AGG | 0.295259 | 3.1:+62582818 | MS.gene052630:CDS |
ATCAGATCCTCCGGCATCTA+TGG | 0.300046 | 3.1:-62583099 | None:intergenic |
ACATGACCAACCATGAATTT+AGG | 0.309976 | 3.1:+62582133 | MS.gene052630:CDS |
TGTCCACAACACCAACAAAA+TGG | 0.326241 | 3.1:+62582074 | MS.gene052630:CDS |
GAACTCATGGGGAGCGGAAT+GGG | 0.328427 | 3.1:+62583396 | MS.gene052630:CDS |
CTGAGGACACATCTTTATCT+TGG | 0.332566 | 3.1:-62581942 | None:intergenic |
AAGCTCCTGCTTCTGTTGAT+TGG | 0.348923 | 3.1:+62582247 | MS.gene052630:CDS |
CTATTACAGGGAGTATTTAC+TGG | 0.367645 | 3.1:+62583289 | MS.gene052630:intron |
GCATCTATGGCTACGGATAC+AGG | 0.385812 | 3.1:-62583086 | None:intergenic |
TCAACTGTTGTAGCTGTTGA+AGG | 0.388321 | 3.1:+62582686 | MS.gene052630:CDS |
TTGTTAAGTTTCAACTTGTA+AGG | 0.389898 | 3.1:-62582102 | None:intergenic |
AGGATGCAATGGTGGGCTAA+TGG | 0.392108 | 3.1:+62582787 | MS.gene052630:CDS |
GATCCATCATTTGCTGTGTA+AGG | 0.397020 | 3.1:-62582866 | None:intergenic |
GTCCCAGCTGTATCAATTGA+TGG | 0.409945 | 3.1:+62583005 | MS.gene052630:CDS |
CACTTCCACGTGGCGTGCCT+CGG | 0.411657 | 3.1:-62582197 | None:intergenic |
GATTGTTCTGTCCATTGCTT+TGG | 0.412192 | 3.1:+62581891 | MS.gene052630:CDS |
ATCAACAGAAGCAGGAGCTT+TGG | 0.419799 | 3.1:-62582244 | None:intergenic |
TGACCATCAATTGATACAGC+TGG | 0.435646 | 3.1:-62583008 | None:intergenic |
GGTGTAGCAATAGTAGGATA+TGG | 0.443941 | 3.1:+62583337 | MS.gene052630:CDS |
TGATGGTCATGAGACTGTTC+CGG | 0.449890 | 3.1:+62583022 | MS.gene052630:CDS |
GGAGTCACCACACGGTTTCT+CGG | 0.450148 | 3.1:+62581998 | MS.gene052630:CDS |
GGATATGGAACAACCGTTGA+TGG | 0.454887 | 3.1:+62583352 | MS.gene052630:CDS |
CGAGGCACGCCACGTGGAAG+TGG | 0.460548 | 3.1:+62582198 | MS.gene052630:CDS |
TCATCCTTGGTAGATGATAA+AGG | 0.462977 | 3.1:-62583532 | None:intergenic |
TAAACCAAATAAAGACAGAT+AGG | 0.464117 | 3.1:+62582711 | MS.gene052630:CDS |
TTCCTCCAATCAACAGAAGC+AGG | 0.475830 | 3.1:-62582252 | None:intergenic |
CATAGGTAGTCCTAAATTCA+TGG | 0.476124 | 3.1:-62582143 | None:intergenic |
CTCCTGCTTCTGTTGATTGG+AGG | 0.481655 | 3.1:+62582250 | MS.gene052630:CDS |
ATTGGATTGTGAGGAACTCA+TGG | 0.493389 | 3.1:+62583383 | MS.gene052630:CDS |
AATCATGGTGTAGCAATAGT+AGG | 0.495226 | 3.1:+62583331 | MS.gene052630:CDS |
GTCACTGAGGTCAAGGATCA+AGG | 0.495703 | 3.1:+62582285 | MS.gene052630:CDS |
TCTAACAAGGAAGGACTTTG+TGG | 0.498260 | 3.1:+62583454 | MS.gene052630:CDS |
GTAGATGATAAAGGTCCTGC+TGG | 0.507201 | 3.1:-62583523 | None:intergenic |
AAACATTCAAAGCTCATCCT+TGG | 0.508057 | 3.1:-62583545 | None:intergenic |
TACCCTTACACAGCAAATGA+TGG | 0.512248 | 3.1:+62582863 | MS.gene052630:CDS |
GAATTTAGGACTACCTATGC+TGG | 0.513702 | 3.1:+62582147 | MS.gene052630:CDS |
GTCCTCAGACAAAAGCTTGT+GGG | 0.513806 | 3.1:+62581957 | MS.gene052630:CDS |
GGAACTCATGGGGAGCGGAA+TGG | 0.524402 | 3.1:+62583395 | MS.gene052630:CDS |
AGGACTTTGTGGCATAGCTA+TGG | 0.526821 | 3.1:+62583465 | MS.gene052630:CDS |
TGTGACAATCAAGAAAATCA+AGG | 0.527505 | 3.1:+62582767 | MS.gene052630:CDS |
GAAAATCAAGGATGCAATGG+TGG | 0.535112 | 3.1:+62582779 | MS.gene052630:CDS |
TCCTCCGGCATCTATGGCTA+CGG | 0.543132 | 3.1:-62583093 | None:intergenic |
GACTACCTATGCTGGATCAA+AGG | 0.546319 | 3.1:+62582155 | MS.gene052630:CDS |
CAAGAAAATCAAGGATGCAA+TGG | 0.548537 | 3.1:+62582776 | MS.gene052630:CDS |
AAACTGGAAATCAGATCCTC+CGG | 0.552551 | 3.1:-62583108 | None:intergenic |
TCTGTTGATTGGAGGAAGAA+AGG | 0.553167 | 3.1:+62582258 | MS.gene052630:CDS |
GGCTACGGATACAGGTTGGT+TGG | 0.553342 | 3.1:-62583078 | None:intergenic |
AGGTGCTGTCACTGAGGTCA+AGG | 0.558185 | 3.1:+62582278 | MS.gene052630:CDS |
ATCCATCATTTGCTGTGTAA+GGG | 0.560080 | 3.1:-62582865 | None:intergenic |
TGTGGTAAAGAGCTAAATCA+TGG | 0.564153 | 3.1:+62583316 | MS.gene052630:CDS |
CCAATAATTAGTTCCATCAA+CGG | 0.573198 | 3.1:-62583365 | None:intergenic |
TGTGGGACTTATACGAGAGA+TGG | 0.573304 | 3.1:+62581974 | MS.gene052630:CDS |
TTGGATTGTGAGGAACTCAT+GGG | 0.574375 | 3.1:+62583384 | MS.gene052630:CDS |
AACTCATGGGGAGCGGAATG+GGG | 0.577276 | 3.1:+62583397 | MS.gene052630:CDS |
GACCATCAATTGATACAGCT+GGG | 0.584179 | 3.1:-62583007 | None:intergenic |
AAAGCATCTTCATCGTTAGC+CGG | 0.584931 | 3.1:-62583041 | None:intergenic |
AAATTCATGGTTGGTCATGT+CGG | 0.587621 | 3.1:-62582130 | None:intergenic |
GGAGCGGAATGGGGTGAACA+AGG | 0.588520 | 3.1:+62583406 | MS.gene052630:CDS |
ATTAACCTTTGATCCAGCAT+AGG | 0.590030 | 3.1:-62582160 | None:intergenic |
GGAGTATTTACTGGCGATTG+TGG | 0.593617 | 3.1:+62583298 | MS.gene052630:CDS |
ATCTTGGAAATCGAAGCTCT+CGG | 0.596119 | 3.1:-62581926 | None:intergenic |
TACTTCAAGAACCAAAGCAA+TGG | 0.600914 | 3.1:-62581902 | None:intergenic |
TGTGAGGAACTCATGGGGAG+CGG | 0.601438 | 3.1:+62583390 | MS.gene052630:CDS |
TGTCCTCAGACAAAAGCTTG+TGG | 0.605870 | 3.1:+62581956 | MS.gene052630:CDS |
ATGTTCCGAGGCACGCCACG+TGG | 0.610728 | 3.1:+62582192 | MS.gene052630:CDS |
GCGTGCCTCGGAACATTCTG+TGG | 0.611727 | 3.1:-62582185 | None:intergenic |
AGGAATGTATCTAACAAGGA+AGG | 0.612463 | 3.1:+62583445 | MS.gene052630:CDS |
GAACTAATTATTGGATTGTG+AGG | 0.613342 | 3.1:+62583374 | MS.gene052630:CDS |
GGTAGTCCTAAATTCATGGT+TGG | 0.613532 | 3.1:-62582139 | None:intergenic |
AAAATCAAGGATGCAATGGT+GGG | 0.617377 | 3.1:+62582780 | MS.gene052630:CDS |
ATAAGCTCTTGTTCAGACAA+AGG | 0.634536 | 3.1:-62582740 | None:intergenic |
AAGGTTACATCAGAATGCAA+AGG | 0.641547 | 3.1:+62583425 | MS.gene052630:CDS |
GCAAAGGAATGTATCTAACA+AGG | 0.642601 | 3.1:+62583441 | MS.gene052630:CDS |
CTATGGCTACGGATACAGGT+TGG | 0.643007 | 3.1:-62583082 | None:intergenic |
GGGACTTATACGAGAGATGG+AGG | 0.652822 | 3.1:+62581977 | MS.gene052630:CDS |
GTATCCGTAGCCATAGATGC+CGG | 0.655334 | 3.1:+62583089 | MS.gene052630:CDS |
AGGACCTTTATCATCTACCA+AGG | 0.670444 | 3.1:+62583528 | MS.gene052630:CDS |
AATCACCACAGAATGTTCCG+AGG | 0.693791 | 3.1:+62582180 | MS.gene052630:CDS |
TCCGTAGCCATAGATGCCGG+AGG | 0.697215 | 3.1:+62583092 | MS.gene052630:CDS |
GTCAAGGATCAAGGCCAATG+TGG | 0.699707 | 3.1:+62582294 | MS.gene052630:CDS |
GAGATGGAGGAGTCACCACA+CGG | 0.702988 | 3.1:+62581990 | MS.gene052630:CDS |
TGGATTGTGAGGAACTCATG+GGG | 0.709984 | 3.1:+62583385 | MS.gene052630:CDS |
CAAGGTTCCGAGAAACCGTG+TGG | 0.716333 | 3.1:-62582005 | None:intergenic |
GAAGAAAGGTGCTGTCACTG+AGG | 0.722701 | 3.1:+62582272 | MS.gene052630:CDS |
ATGAATGTTCCACTTCCACG+TGG | 0.756623 | 3.1:-62582207 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTACTTTTTTATTTTGA+AGG | - | chr3.1:62583197-62583216 | None:intergenic | 10.0% |
!! | AGTGAATTGAATTTATAAAT+AGG | - | chr3.1:62582472-62582491 | None:intergenic | 15.0% |
!! | TAAAAAAGTAAAAAAAGAGA+TGG | + | chr3.1:62583203-62583222 | MS.gene052630:intron | 15.0% |
!! | TAGTATAACTATTTGAAAAT+AGG | - | chr3.1:62582536-62582555 | None:intergenic | 15.0% |
!!! | ATGAACAATTTTTGAATCTT+AGG | - | chr3.1:62582972-62582991 | None:intergenic | 20.0% |
! | TAAACCAAATAAAGACAGAT+AGG | + | chr3.1:62582711-62582730 | MS.gene052630:CDS | 25.0% |
! | TATAATTGACATGCAACTTT+AGG | + | chr3.1:62582944-62582963 | MS.gene052630:intron | 25.0% |
! | TTGTTAAGTTTCAACTTGTA+AGG | - | chr3.1:62582105-62582124 | None:intergenic | 25.0% |
! | TTTGAGTACATTAAGCAAAA+AGG | + | chr3.1:62582818-62582837 | MS.gene052630:CDS | 25.0% |
!! | ATTTTGTATACACCTATTAC+AGG | + | chr3.1:62583276-62583295 | MS.gene052630:intron | 25.0% |
!! | TATTGACTACATAAATGCAT+AGG | + | chr3.1:62582492-62582511 | MS.gene052630:intron | 25.0% |
!! | TTGTGATTAATGTTTTGTAC+AGG | + | chr3.1:62582647-62582666 | MS.gene052630:intron | 25.0% |
!! | TTTTGTATACACCTATTACA+GGG | + | chr3.1:62583277-62583296 | MS.gene052630:intron | 25.0% |
!!! | CTTTTTTTAACTTACCACAT+TGG | - | chr3.1:62582311-62582330 | None:intergenic | 25.0% |
AAAGCTATAGTGCATAATAG+TGG | - | chr3.1:62582612-62582631 | None:intergenic | 30.0% | |
CCAATAATTAGTTCCATCAA+CGG | - | chr3.1:62583368-62583387 | None:intergenic | 30.0% | |
CTAACCTATCTGTCTTTATT+TGG | - | chr3.1:62582718-62582737 | None:intergenic | 30.0% | |
GAACTAATTATTGGATTGTG+AGG | + | chr3.1:62583374-62583393 | MS.gene052630:CDS | 30.0% | |
TCAAAAATTGTTCATGTTGC+AGG | + | chr3.1:62582977-62582996 | MS.gene052630:intron | 30.0% | |
TGTGACAATCAAGAAAATCA+AGG | + | chr3.1:62582767-62582786 | MS.gene052630:CDS | 30.0% | |
! | ATCTGATTTCCAGTTTTACT+CGG | + | chr3.1:62583115-62583134 | MS.gene052630:CDS | 30.0% |
!! | TTTTGGAGGAGTTTTTAACT+GGG | - | chr3.1:62583501-62583520 | None:intergenic | 30.0% |
!! | TTTTTGGAGGAGTTTTTAAC+TGG | - | chr3.1:62583502-62583521 | None:intergenic | 30.0% |
AAAATCAAGGATGCAATGGT+GGG | + | chr3.1:62582780-62582799 | MS.gene052630:CDS | 35.0% | |
AAGGTTACATCAGAATGCAA+AGG | + | chr3.1:62583425-62583444 | MS.gene052630:CDS | 35.0% | |
AATCATGGTGTAGCAATAGT+AGG | + | chr3.1:62583331-62583350 | MS.gene052630:CDS | 35.0% | |
ACATGACCAACCATGAATTT+AGG | + | chr3.1:62582133-62582152 | MS.gene052630:CDS | 35.0% | |
AGGAATGTATCTAACAAGGA+AGG | + | chr3.1:62583445-62583464 | MS.gene052630:CDS | 35.0% | |
ATAAGCTCTTGTTCAGACAA+AGG | - | chr3.1:62582743-62582762 | None:intergenic | 35.0% | |
ATTAACCTTTGATCCAGCAT+AGG | - | chr3.1:62582163-62582182 | None:intergenic | 35.0% | |
ATTCTCTTGTGTCAATAGAG+AGG | - | chr3.1:62583161-62583180 | None:intergenic | 35.0% | |
CAAGAAAATCAAGGATGCAA+TGG | + | chr3.1:62582776-62582795 | MS.gene052630:CDS | 35.0% | |
CAGTAAATACTCCCTGTAAT+AGG | - | chr3.1:62583291-62583310 | None:intergenic | 35.0% | |
CATAGGTAGTCCTAAATTCA+TGG | - | chr3.1:62582146-62582165 | None:intergenic | 35.0% | |
GAGTACATTAAGCAAAAAGG+TGG | + | chr3.1:62582821-62582840 | MS.gene052630:CDS | 35.0% | |
GCAAAGGAATGTATCTAACA+AGG | + | chr3.1:62583441-62583460 | MS.gene052630:CDS | 35.0% | |
GTTGCAAACCTGAAACTTAA+AGG | + | chr3.1:62582428-62582447 | MS.gene052630:intron | 35.0% | |
TACTTCAAGAACCAAAGCAA+TGG | - | chr3.1:62581905-62581924 | None:intergenic | 35.0% | |
TCATCCTTGGTAGATGATAA+AGG | - | chr3.1:62583535-62583554 | None:intergenic | 35.0% | |
TGTGGTAAAGAGCTAAATCA+TGG | + | chr3.1:62583316-62583335 | MS.gene052630:CDS | 35.0% | |
! | AAATTCATGGTTGGTCATGT+CGG | - | chr3.1:62582133-62582152 | None:intergenic | 35.0% |
! | CCGTTGATGGAACTAATTAT+TGG | + | chr3.1:62583365-62583384 | MS.gene052630:CDS | 35.0% |
! | GTAAGGCTTATCCATTTTGT+TGG | - | chr3.1:62582088-62582107 | None:intergenic | 35.0% |
! | TTTTTACCTCCGAGTAAAAC+TGG | - | chr3.1:62583127-62583146 | None:intergenic | 35.0% |
!! | ATCCATCATTTGCTGTGTAA+GGG | - | chr3.1:62582868-62582887 | None:intergenic | 35.0% |
!! | CTATTACAGGGAGTATTTAC+TGG | + | chr3.1:62583289-62583308 | MS.gene052630:intron | 35.0% |
!!! | TATCCATTTTGTTGGTGTTG+TGG | - | chr3.1:62582080-62582099 | None:intergenic | 35.0% |
AAACTGGAAATCAGATCCTC+CGG | - | chr3.1:62583111-62583130 | None:intergenic | 40.0% | |
AGGACCTTTATCATCTACCA+AGG | + | chr3.1:62583528-62583547 | MS.gene052630:CDS | 40.0% | |
ATCTTGGAAATCGAAGCTCT+CGG | - | chr3.1:62581929-62581948 | None:intergenic | 40.0% | |
ATTGGATTGTGAGGAACTCA+TGG | + | chr3.1:62583383-62583402 | MS.gene052630:CDS | 40.0% | |
CTGAGGACACATCTTTATCT+TGG | - | chr3.1:62581945-62581964 | None:intergenic | 40.0% | |
GAAAATCAAGGATGCAATGG+TGG | + | chr3.1:62582779-62582798 | MS.gene052630:CDS | 40.0% | |
GACACCATCTGATCAAAGAT+CGG | + | chr3.1:62582382-62582401 | MS.gene052630:intron | 40.0% | |
GACCATCAATTGATACAGCT+GGG | - | chr3.1:62583010-62583029 | None:intergenic | 40.0% | |
GATTGTTCTGTCCATTGCTT+TGG | + | chr3.1:62581891-62581910 | MS.gene052630:CDS | 40.0% | |
GGTAGTCCTAAATTCATGGT+TGG | - | chr3.1:62582142-62582161 | None:intergenic | 40.0% | |
GGTGTAGCAATAGTAGGATA+TGG | + | chr3.1:62583337-62583356 | MS.gene052630:CDS | 40.0% | |
TACCCTTACACAGCAAATGA+TGG | + | chr3.1:62582863-62582882 | MS.gene052630:CDS | 40.0% | |
TCAACTGTTGTAGCTGTTGA+AGG | + | chr3.1:62582686-62582705 | MS.gene052630:CDS | 40.0% | |
TCATCCGATCTTTGATCAGA+TGG | - | chr3.1:62582389-62582408 | None:intergenic | 40.0% | |
TCTAACAAGGAAGGACTTTG+TGG | + | chr3.1:62583454-62583473 | MS.gene052630:CDS | 40.0% | |
TGACCATCAATTGATACAGC+TGG | - | chr3.1:62583011-62583030 | None:intergenic | 40.0% | |
TGTCCACAACACCAACAAAA+TGG | + | chr3.1:62582074-62582093 | MS.gene052630:CDS | 40.0% | |
TTGGATTGTGAGGAACTCAT+GGG | + | chr3.1:62583384-62583403 | MS.gene052630:CDS | 40.0% | |
! | AAAGCATCTTCATCGTTAGC+CGG | - | chr3.1:62583044-62583063 | None:intergenic | 40.0% |
! | GAATTTAGGACTACCTATGC+TGG | + | chr3.1:62582147-62582166 | MS.gene052630:CDS | 40.0% |
! | GTTTTGTACAGGTAGTTGCT+GGG | + | chr3.1:62582658-62582677 | MS.gene052630:intron | 40.0% |
! | TAAAGGTCCTGCTGGATTTT+TGG | - | chr3.1:62583518-62583537 | None:intergenic | 40.0% |
! | TCTGTTGATTGGAGGAAGAA+AGG | + | chr3.1:62582258-62582277 | MS.gene052630:CDS | 40.0% |
! | TGATTTCCAGTTTTACTCGG+AGG | + | chr3.1:62583118-62583137 | MS.gene052630:CDS | 40.0% |
! | TGTTTTGTACAGGTAGTTGC+TGG | + | chr3.1:62582657-62582676 | MS.gene052630:intron | 40.0% |
!! | AGCGCTTTTGTTTCTCATCA+AGG | - | chr3.1:62582026-62582045 | None:intergenic | 40.0% |
!! | GATCCATCATTTGCTGTGTA+AGG | - | chr3.1:62582869-62582888 | None:intergenic | 40.0% |
AACTCCTCCAAAAATCCAGC+AGG | + | chr3.1:62583508-62583527 | MS.gene052630:CDS | 45.0% | |
AAGCTCCTGCTTCTGTTGAT+TGG | + | chr3.1:62582247-62582266 | MS.gene052630:CDS | 45.0% | |
AATCACCACAGAATGTTCCG+AGG | + | chr3.1:62582180-62582199 | MS.gene052630:CDS | 45.0% | |
AGGACTTTGTGGCATAGCTA+TGG | + | chr3.1:62583465-62583484 | MS.gene052630:CDS | 45.0% | |
ATCAACAGAAGCAGGAGCTT+TGG | - | chr3.1:62582247-62582266 | None:intergenic | 45.0% | |
ATGAATGTTCCACTTCCACG+TGG | - | chr3.1:62582210-62582229 | None:intergenic | 45.0% | |
CCTGAAACTTAAAGGACTCG+TGG | + | chr3.1:62582436-62582455 | MS.gene052630:intron | 45.0% | |
GACTACCTATGCTGGATCAA+AGG | + | chr3.1:62582155-62582174 | MS.gene052630:CDS | 45.0% | |
GGATATGGAACAACCGTTGA+TGG | + | chr3.1:62583352-62583371 | MS.gene052630:CDS | 45.0% | |
GTAGATGATAAAGGTCCTGC+TGG | - | chr3.1:62583526-62583545 | None:intergenic | 45.0% | |
GTCCCAGCTGTATCAATTGA+TGG | + | chr3.1:62583005-62583024 | MS.gene052630:CDS | 45.0% | |
GTCCTCAGACAAAAGCTTGT+GGG | + | chr3.1:62581957-62581976 | MS.gene052630:CDS | 45.0% | |
TGATGGTCATGAGACTGTTC+CGG | + | chr3.1:62583022-62583041 | MS.gene052630:CDS | 45.0% | |
TGGATTGTGAGGAACTCATG+GGG | + | chr3.1:62583385-62583404 | MS.gene052630:CDS | 45.0% | |
TGTCCTCAGACAAAAGCTTG+TGG | + | chr3.1:62581956-62581975 | MS.gene052630:CDS | 45.0% | |
TGTGGGACTTATACGAGAGA+TGG | + | chr3.1:62581974-62581993 | MS.gene052630:CDS | 45.0% | |
TTCCTCCAATCAACAGAAGC+AGG | - | chr3.1:62582255-62582274 | None:intergenic | 45.0% | |
! | CCACGAGTCCTTTAAGTTTC+AGG | - | chr3.1:62582439-62582458 | None:intergenic | 45.0% |
! | GGAGTATTTACTGGCGATTG+TGG | + | chr3.1:62583298-62583317 | MS.gene052630:CDS | 45.0% |
!! | GGAGGAGTTTTTAACTGGGT+AGG | - | chr3.1:62583497-62583516 | None:intergenic | 45.0% |
!! | AAAAATATAATATATAACTT+AGG | - | chr3.1:62582589-62582608 | None:intergenic | 5.0% |
ATCAGATCCTCCGGCATCTA+TGG | - | chr3.1:62583102-62583121 | None:intergenic | 50.0% | |
CTATGGCTACGGATACAGGT+TGG | - | chr3.1:62583085-62583104 | None:intergenic | 50.0% | |
GCATCTATGGCTACGGATAC+AGG | - | chr3.1:62583089-62583108 | None:intergenic | 50.0% | |
GGGACTTATACGAGAGATGG+AGG | + | chr3.1:62581977-62581996 | MS.gene052630:CDS | 50.0% | |
GTATCCGTAGCCATAGATGC+CGG | + | chr3.1:62583089-62583108 | MS.gene052630:CDS | 50.0% | |
GTCAAGGATCAAGGCCAATG+TGG | + | chr3.1:62582294-62582313 | MS.gene052630:CDS | 50.0% | |
GTCACTGAGGTCAAGGATCA+AGG | + | chr3.1:62582285-62582304 | MS.gene052630:CDS | 50.0% | |
! | CTCCTGCTTCTGTTGATTGG+AGG | + | chr3.1:62582250-62582269 | MS.gene052630:CDS | 50.0% |
! | CTGTTGACTGCGTGAATGCA+TGG | - | chr3.1:62582359-62582378 | None:intergenic | 50.0% |
! | GTCCCACAAGCTTTTGTCTG+AGG | - | chr3.1:62581962-62581981 | None:intergenic | 50.0% |
!! | AGGATGCAATGGTGGGCTAA+TGG | + | chr3.1:62582787-62582806 | MS.gene052630:CDS | 50.0% |
!! | AGGTCCTGCTGGATTTTTGG+AGG | - | chr3.1:62583515-62583534 | None:intergenic | 50.0% |
!! | GAAGAAAGGTGCTGTCACTG+AGG | + | chr3.1:62582272-62582291 | MS.gene052630:CDS | 50.0% |
AACTCATGGGGAGCGGAATG+GGG | + | chr3.1:62583397-62583416 | MS.gene052630:CDS | 55.0% | |
CAAGGTTCCGAGAAACCGTG+TGG | - | chr3.1:62582008-62582027 | None:intergenic | 55.0% | |
GAACTCATGGGGAGCGGAAT+GGG | + | chr3.1:62583396-62583415 | MS.gene052630:CDS | 55.0% | |
GAGATGGAGGAGTCACCACA+CGG | + | chr3.1:62581990-62582009 | MS.gene052630:CDS | 55.0% | |
GGAGTCACCACACGGTTTCT+CGG | + | chr3.1:62581998-62582017 | MS.gene052630:CDS | 55.0% | |
TCCTCCGGCATCTATGGCTA+CGG | - | chr3.1:62583096-62583115 | None:intergenic | 55.0% | |
TGTGAGGAACTCATGGGGAG+CGG | + | chr3.1:62583390-62583409 | MS.gene052630:CDS | 55.0% | |
! | AGGTGCTGTCACTGAGGTCA+AGG | + | chr3.1:62582278-62582297 | MS.gene052630:CDS | 55.0% |
!! | GGCTACGGATACAGGTTGGT+TGG | - | chr3.1:62583081-62583100 | None:intergenic | 55.0% |
GCGTGCCTCGGAACATTCTG+TGG | - | chr3.1:62582188-62582207 | None:intergenic | 60.0% | |
GGAACTCATGGGGAGCGGAA+TGG | + | chr3.1:62583395-62583414 | MS.gene052630:CDS | 60.0% | |
GGAGCGGAATGGGGTGAACA+AGG | + | chr3.1:62583406-62583425 | MS.gene052630:CDS | 60.0% | |
TCCGTAGCCATAGATGCCGG+AGG | + | chr3.1:62583092-62583111 | MS.gene052630:CDS | 60.0% | |
ATGTTCCGAGGCACGCCACG+TGG | + | chr3.1:62582192-62582211 | MS.gene052630:CDS | 65.0% | |
CACTTCCACGTGGCGTGCCT+CGG | - | chr3.1:62582200-62582219 | None:intergenic | 65.0% | |
CGAGGCACGCCACGTGGAAG+TGG | + | chr3.1:62582198-62582217 | MS.gene052630:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 62581868 | 62583561 | 62581868 | ID=MS.gene052630 |
chr3.1 | mRNA | 62581868 | 62583561 | 62581868 | ID=MS.gene052630.t1;Parent=MS.gene052630 |
chr3.1 | exon | 62581868 | 62582315 | 62581868 | ID=MS.gene052630.t1.exon1;Parent=MS.gene052630.t1 |
chr3.1 | CDS | 62581868 | 62582315 | 62581868 | ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1 |
chr3.1 | exon | 62582669 | 62582904 | 62582669 | ID=MS.gene052630.t1.exon2;Parent=MS.gene052630.t1 |
chr3.1 | CDS | 62582669 | 62582904 | 62582669 | ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1 |
chr3.1 | exon | 62582999 | 62583139 | 62582999 | ID=MS.gene052630.t1.exon3;Parent=MS.gene052630.t1 |
chr3.1 | CDS | 62582999 | 62583139 | 62582999 | ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1 |
chr3.1 | exon | 62583298 | 62583561 | 62583298 | ID=MS.gene052630.t1.exon4;Parent=MS.gene052630.t1 |
chr3.1 | CDS | 62583298 | 62583561 | 62583298 | ID=cds.MS.gene052630.t1;Parent=MS.gene052630.t1 |
Gene Sequence |
Protein sequence |