Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41953.t1 | XP_013452135.1 | 97.4 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 2.00E-285 | 991.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41953.t1 | Q9AV23 | 52.2 | 544 | 195 | 4 | 1 | 543 | 1 | 480 | 6.6e-144 | 512.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41953.t1 | A0A072UAN3 | 97.4 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 1.5e-285 | 991.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055701 | MS.gene41953 | 0.808023 | 3.80E-50 | -1.69E-46 |
| MS.gene058898 | MS.gene41953 | 0.89805 | 7.75E-77 | -1.69E-46 |
| MS.gene060010 | MS.gene41953 | 0.940563 | 1.88E-100 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41953.t1 | MTR_6g045483 | 97.426 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 0.0 | 1066 |
| MS.gene41953.t1 | MTR_8g038580 | 93.750 | 544 | 34 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1022 |
| MS.gene41953.t1 | MTR_6g045483 | 96.522 | 460 | 10 | 1 | 1 | 460 | 1 | 454 | 0.0 | 897 |
| MS.gene41953.t1 | MTR_6g045483 | 96.937 | 457 | 8 | 1 | 1 | 457 | 1 | 451 | 0.0 | 897 |
| MS.gene41953.t1 | MTR_6g045483 | 96.447 | 394 | 8 | 1 | 1 | 394 | 1 | 388 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41953.t1 | AT1G02260 | 67.336 | 548 | 129 | 6 | 1 | 544 | 1 | 502 | 0.0 | 728 |
| MS.gene41953.t1 | AT1G02260 | 67.336 | 548 | 129 | 6 | 1 | 544 | 1 | 502 | 0.0 | 728 |
Find 85 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATTCCAAGTGCTTTA+TGG | 0.120821 | 6.4:-19078219 | MS.gene41953:CDS |
| TATACTTGTCCTATCAAATT+TGG | 0.181249 | 6.4:-19078134 | MS.gene41953:CDS |
| TTCTGGAGTCATTTGAAATT+TGG | 0.188552 | 6.4:-19077212 | MS.gene41953:CDS |
| CCATAAGCATTGCACCTAAA+AGG | 0.208915 | 6.4:+19079441 | None:intergenic |
| ATTGAACCTAAAACAACTTT+TGG | 0.239033 | 6.4:+19079539 | None:intergenic |
| ACATAGGAAAGTTACTTTCT+TGG | 0.262811 | 6.4:-19079298 | MS.gene41953:CDS |
| AACTGCTAATATCCAGAAAA+TGG | 0.271530 | 6.4:+19079508 | None:intergenic |
| GAACGATCAACTCGCGAATA+AGG | 0.283924 | 6.4:+19078184 | None:intergenic |
| TTGTAGAATCTGTTTGATTT+CGG | 0.307692 | 6.4:-19079249 | MS.gene41953:CDS |
| TGTGTTTATATGATTACATT+AGG | 0.308469 | 6.4:-19078507 | MS.gene41953:CDS |
| ACTATTATAGTTACTGCTAT+TGG | 0.314024 | 6.4:-19077179 | MS.gene41953:CDS |
| TGGAATTCCAAGTGCTTTAT+GGG | 0.317249 | 6.4:-19078218 | MS.gene41953:CDS |
| TATCATACACATTGACATTC+TGG | 0.318666 | 6.4:-19077229 | MS.gene41953:CDS |
| CATTTGATGCCAAATTTGAT+AGG | 0.320948 | 6.4:+19078125 | None:intergenic |
| TCAGCTGCAACTTCCGCAAT+AGG | 0.340152 | 6.4:+19078912 | None:intergenic |
| AGCAGGGAACCTGTCACTAT+TGG | 0.345978 | 6.4:-19077303 | MS.gene41953:CDS |
| AAGTGCTTTATGGGAGTTGA+TGG | 0.347243 | 6.4:-19078209 | MS.gene41953:CDS |
| GTTCTACCAATTGGTAGAAA+TGG | 0.355990 | 6.4:+19079473 | None:intergenic |
| AGAAGGGACTAATAATGATT+TGG | 0.366413 | 6.4:-19078667 | MS.gene41953:CDS |
| GGTTCCTCGGCTACGCCAAT+TGG | 0.379953 | 6.4:-19079095 | MS.gene41953:CDS |
| ATTGTTCCAGCTATGCTTGT+AGG | 0.381023 | 6.4:-19079008 | MS.gene41953:CDS |
| CGCTATCACTCGAAATCATT+CGG | 0.382606 | 6.4:+19078751 | None:intergenic |
| TGATTCTTATAGCTATGTAT+TGG | 0.385215 | 6.4:-19078968 | MS.gene41953:CDS |
| ATTGCAGCGTACGCTTCTTC+CGG | 0.394105 | 6.4:+19079398 | None:intergenic |
| TATGTCGTGGACTGCAATTT+CGG | 0.400089 | 6.4:-19078454 | MS.gene41953:CDS |
| CCGAAAAGAAGACCGAGAAT+TGG | 0.409478 | 6.4:+19079368 | None:intergenic |
| GCAGTTCCATTTCTACCAAT+TGG | 0.420465 | 6.4:-19079479 | MS.gene41953:CDS |
| GTAGACGGATTCAACAAAAC+TGG | 0.421350 | 6.4:-19078238 | MS.gene41953:CDS |
| TTTCCCAAGAAGACGAGAAA+AGG | 0.423803 | 6.4:-19077358 | MS.gene41953:CDS |
| ATGTTGATTGCAATGCTTCT+TGG | 0.424623 | 6.4:-19078483 | MS.gene41953:CDS |
| CGAGTGATAGCGAAATTGAT+AGG | 0.429807 | 6.4:-19078740 | MS.gene41953:CDS |
| AGAATGTCAATGTGTATGAT+AGG | 0.432270 | 6.4:+19077231 | None:intergenic |
| GCAGGGAACCTGTCACTATT+GGG | 0.435913 | 6.4:-19077302 | MS.gene41953:CDS |
| GCAATCGATCTTCCAATTCT+CGG | 0.438203 | 6.4:-19079380 | MS.gene41953:CDS |
| GAAAAGGGCATGGCTCATAT+TGG | 0.444360 | 6.4:-19077342 | MS.gene41953:CDS |
| CTTAATTCTCAAGAGTTGAA+TGG | 0.444464 | 6.4:-19078831 | MS.gene41953:CDS |
| TTTAGTACCTTCTCTAAACT+TGG | 0.448984 | 6.4:+19078390 | None:intergenic |
| CATAAGCATTGCACCTAAAA+GGG | 0.451280 | 6.4:+19079442 | None:intergenic |
| TTACTTTCTTGGAAAAGTAA+AGG | 0.451454 | 6.4:-19079287 | MS.gene41953:CDS |
| AATTTCGGCTGCATTAGCTT+TGG | 0.452114 | 6.4:-19078439 | MS.gene41953:CDS |
| GTCGAGAGTAAAATTTCATT+CGG | 0.459818 | 6.4:-19079047 | MS.gene41953:CDS |
| GTCAATGTGTATGATAGGTT+TGG | 0.462325 | 6.4:+19077236 | None:intergenic |
| ACAACTCCTACAAGCATAGC+TGG | 0.466657 | 6.4:+19079002 | None:intergenic |
| GCTTGGGTCAGCACTATAGC+AGG | 0.474992 | 6.4:-19077320 | MS.gene41953:CDS |
| ATTGGTAGAAATGGAACTGC+TGG | 0.479127 | 6.4:+19079482 | None:intergenic |
| CTACCAATTGGTAGAACAGC+AGG | 0.479216 | 6.4:-19079467 | MS.gene41953:CDS |
| GAAGTAGATAGAACAATAGA+AGG | 0.481433 | 6.4:-19078600 | MS.gene41953:CDS |
| GATCCTGCTGTTCTACCAAT+TGG | 0.482125 | 6.4:+19079464 | None:intergenic |
| GGCATGGCTCATATTGGCTT+GGG | 0.482781 | 6.4:-19077336 | MS.gene41953:CDS |
| AATTCAACTGCATCAAAAGA+AGG | 0.484658 | 6.4:-19078684 | MS.gene41953:CDS |
| GGGCATGGCTCATATTGGCT+TGG | 0.487511 | 6.4:-19077337 | MS.gene41953:CDS |
| GCAGTAACTATAATAGTTGA+AGG | 0.493622 | 6.4:+19077185 | None:intergenic |
| TTCCCAAGAAGACGAGAAAA+GGG | 0.509066 | 6.4:-19077357 | MS.gene41953:CDS |
| TTGGGAAATTGCAGCTGCTG+AGG | 0.511779 | 6.4:+19077373 | None:intergenic |
| TTGGCATCAAATGTACCAAC+CGG | 0.512398 | 6.4:-19078115 | MS.gene41953:intron |
| TCGCGAGTTGATCGTTCTAG+TGG | 0.516278 | 6.4:-19078178 | MS.gene41953:CDS |
| CAGCTGATCCCAATAGTGAC+AGG | 0.519036 | 6.4:+19077294 | None:intergenic |
| AAGTGCTAACATCGGTTCCT+CGG | 0.528951 | 6.4:-19079108 | MS.gene41953:CDS |
| TTTCGTAGATTATGAACTTG+AGG | 0.530794 | 6.4:+19078774 | None:intergenic |
| TTGGAAAAGTAAAGGAGCAA+AGG | 0.533404 | 6.4:-19079279 | MS.gene41953:CDS |
| TGTTCTATCTACTTCGACAA+CGG | 0.538660 | 6.4:+19078608 | None:intergenic |
| GAATAATGAGACATTGTAGC+TGG | 0.539645 | 6.4:+19078861 | None:intergenic |
| ATCAACTCCCATAAAGCACT+TGG | 0.541024 | 6.4:+19078211 | None:intergenic |
| TGATTTGGCATCTCAAACAA+AGG | 0.541519 | 6.4:-19078652 | MS.gene41953:CDS |
| TTTGATCACTTCGGAAGGAA+AGG | 0.548122 | 6.4:-19078571 | MS.gene41953:CDS |
| TTCTTGATTTCAAAGATGCT+AGG | 0.551545 | 6.4:-19078413 | MS.gene41953:CDS |
| TTCTTGGTTTAAATATGTCG+TGG | 0.568745 | 6.4:-19078467 | MS.gene41953:CDS |
| GCAGATATGTTCAAATACAT+AGG | 0.569867 | 6.4:-19079314 | MS.gene41953:CDS |
| GGAATGTTTATCACAGTAGA+CGG | 0.571373 | 6.4:-19078253 | MS.gene41953:CDS |
| ATTCAACTGCATCAAAAGAA+GGG | 0.589713 | 6.4:-19078683 | MS.gene41953:CDS |
| TGCTAGGCCAAGTTTAGAGA+AGG | 0.593210 | 6.4:-19078397 | MS.gene41953:intron |
| GAAATTGATAGGTTTCATGT+TGG | 0.608915 | 6.4:-19078729 | MS.gene41953:CDS |
| TAATATCCAGAAAATGGCAA+AGG | 0.624978 | 6.4:+19079514 | None:intergenic |
| AATATTCAGAGTTATTACTC+CGG | 0.627366 | 6.4:-19079417 | MS.gene41953:CDS |
| ATCTGTTCATAAAGATATCG+AGG | 0.627397 | 6.4:-19078937 | MS.gene41953:CDS |
| CCACAGTCTACGCTTCCACT+CGG | 0.628208 | 6.4:+19078536 | None:intergenic |
| GTTACCAATTGGCGTAGCCG+AGG | 0.632022 | 6.4:+19079091 | None:intergenic |
| CAGTAACTATAATAGTTGAA+GGG | 0.641516 | 6.4:+19077186 | None:intergenic |
| AAGAAGACGAGAAAAGGGCA+TGG | 0.651383 | 6.4:-19077352 | MS.gene41953:CDS |
| AGATATCGAGGATCCTATTG+CGG | 0.653537 | 6.4:-19078925 | MS.gene41953:CDS |
| TTTGGCATCTCAAACAAAGG+AGG | 0.664262 | 6.4:-19078649 | MS.gene41953:CDS |
| CCGAGTGGAAGCGTAGACTG+TGG | 0.667099 | 6.4:-19078536 | MS.gene41953:CDS |
| CTTGCTTCAAGTGCTAACAT+CGG | 0.673429 | 6.4:-19079116 | MS.gene41953:CDS |
| CTTGGGTCAGCACTATAGCA+GGG | 0.686858 | 6.4:-19077319 | MS.gene41953:CDS |
| AGGACTATTTAAGCGCCGAG+TGG | 0.696263 | 6.4:-19078551 | MS.gene41953:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATGTAAACACAATAT+TGG | + | chr6.4:19079294-19079313 | None:intergenic | 15.0% |
| !!! | TTTTAACTCAAAAATTTTCA+AGG | + | chr6.4:19079229-19079248 | None:intergenic | 15.0% |
| !! | ATCATTAATCTCCAATTTAA+AGG | - | chr6.4:19078810-19078829 | MS.gene41953:CDS | 20.0% |
| !! | TGTGTTTATATGATTACATT+AGG | - | chr6.4:19078210-19078229 | MS.gene41953:CDS | 20.0% |
| !!! | ATTCTTTTTTTTTTCTTCGT+AGG | - | chr6.4:19078786-19078805 | MS.gene41953:CDS | 20.0% |
| !!! | ATTTGATTTCACCTTTAAAT+TGG | + | chr6.4:19078824-19078843 | None:intergenic | 20.0% |
| !!! | ATTTTTATAGTACTATTGCT+TGG | - | chr6.4:19079307-19079326 | MS.gene41953:CDS | 20.0% |
| !!! | TGCAATTTTCAATATGAATT+CGG | + | chr6.4:19077542-19077561 | None:intergenic | 20.0% |
| ! | AATATTCAGAGTTATTACTC+CGG | - | chr6.4:19077300-19077319 | MS.gene41953:CDS | 25.0% |
| ! | ACTAAAAAACTATGAACACT+TGG | - | chr6.4:19078344-19078363 | MS.gene41953:intron | 25.0% |
| ! | ACTATTATAGTTACTGCTAT+TGG | - | chr6.4:19079538-19079557 | MS.gene41953:CDS | 25.0% |
| ! | CAGTAACTATAATAGTTGAA+GGG | + | chr6.4:19079534-19079553 | None:intergenic | 25.0% |
| ! | TATACTTGTCCTATCAAATT+TGG | - | chr6.4:19078583-19078602 | MS.gene41953:CDS | 25.0% |
| ! | TGATTCTTATAGCTATGTAT+TGG | - | chr6.4:19077749-19077768 | MS.gene41953:intron | 25.0% |
| ! | TTACTTTCTTGGAAAAGTAA+AGG | - | chr6.4:19077430-19077449 | MS.gene41953:intron | 25.0% |
| ! | TTATGTTAGTGTTGTGAAAT+AGG | - | chr6.4:19078857-19078876 | MS.gene41953:CDS | 25.0% |
| !! | ATTGAACCTAAAACAACTTT+TGG | + | chr6.4:19077181-19077200 | None:intergenic | 25.0% |
| !! | TTGTAGAATCTGTTTGATTT+CGG | - | chr6.4:19077468-19077487 | MS.gene41953:intron | 25.0% |
| !!! | AAATTTTCAAGGAAATGAAG+AGG | + | chr6.4:19079218-19079237 | None:intergenic | 25.0% |
| !!! | TCACTTTTGATATTCTTTTG+TGG | - | chr6.4:19078443-19078462 | MS.gene41953:CDS | 25.0% |
| AACTGCTAATATCCAGAAAA+TGG | + | chr6.4:19077212-19077231 | None:intergenic | 30.0% | |
| AATTCAACTGCATCAAAAGA+AGG | - | chr6.4:19078033-19078052 | MS.gene41953:intron | 30.0% | |
| ACATAAAATCATATGACGTG+TGG | + | chr6.4:19078725-19078744 | None:intergenic | 30.0% | |
| AGAAGGGACTAATAATGATT+TGG | - | chr6.4:19078050-19078069 | MS.gene41953:intron | 30.0% | |
| AGAATGTCAATGTGTATGAT+AGG | + | chr6.4:19079489-19079508 | None:intergenic | 30.0% | |
| ATCTGTTCATAAAGATATCG+AGG | - | chr6.4:19077780-19077799 | MS.gene41953:intron | 30.0% | |
| ATTCAACTGCATCAAAAGAA+GGG | - | chr6.4:19078034-19078053 | MS.gene41953:intron | 30.0% | |
| CATTTGATGCCAAATTTGAT+AGG | + | chr6.4:19078595-19078614 | None:intergenic | 30.0% | |
| CTTAATTCTCAAGAGTTGAA+TGG | - | chr6.4:19077886-19077905 | MS.gene41953:intron | 30.0% | |
| CTTCGGTTTCTAAATTGTAA+GGG | + | chr6.4:19078697-19078716 | None:intergenic | 30.0% | |
| GAAATTGATAGGTTTCATGT+TGG | - | chr6.4:19077988-19078007 | MS.gene41953:intron | 30.0% | |
| GAAGTAGATAGAACAATAGA+AGG | - | chr6.4:19078117-19078136 | MS.gene41953:CDS | 30.0% | |
| GCAGATATGTTCAAATACAT+AGG | - | chr6.4:19077403-19077422 | MS.gene41953:CDS | 30.0% | |
| GCAGTAACTATAATAGTTGA+AGG | + | chr6.4:19079535-19079554 | None:intergenic | 30.0% | |
| GGAAATGAAGAGGAAATATT+TGG | + | chr6.4:19079208-19079227 | None:intergenic | 30.0% | |
| GTCGAGAGTAAAATTTCATT+CGG | - | chr6.4:19077670-19077689 | MS.gene41953:intron | 30.0% | |
| GTTCAACTATGTTTCAACTA+TGG | - | chr6.4:19078996-19079015 | MS.gene41953:CDS | 30.0% | |
| TAATATCCAGAAAATGGCAA+AGG | + | chr6.4:19077206-19077225 | None:intergenic | 30.0% | |
| TAATTGAATGCATCAACTTG+TGG | - | chr6.4:19078744-19078763 | MS.gene41953:CDS | 30.0% | |
| TATCATACACATTGACATTC+TGG | - | chr6.4:19079488-19079507 | MS.gene41953:CDS | 30.0% | |
| TCTTCGGTTTCTAAATTGTA+AGG | + | chr6.4:19078698-19078717 | None:intergenic | 30.0% | |
| TTCACAACACTAACATAACA+TGG | + | chr6.4:19078855-19078874 | None:intergenic | 30.0% | |
| TTCTTGATTTCAAAGATGCT+AGG | - | chr6.4:19078304-19078323 | MS.gene41953:intron | 30.0% | |
| TTCTTGGTTTAAATATGTCG+TGG | - | chr6.4:19078250-19078269 | MS.gene41953:CDS | 30.0% | |
| TTTAGTACCTTCTCTAAACT+TGG | + | chr6.4:19078330-19078349 | None:intergenic | 30.0% | |
| TTTCGTAGATTATGAACTTG+AGG | + | chr6.4:19077946-19077965 | None:intergenic | 30.0% | |
| ! | AATTTTTCTCTTGTTGCTAC+AGG | - | chr6.4:19078412-19078431 | MS.gene41953:CDS | 30.0% |
| ! | ACATAGGAAAGTTACTTTCT+TGG | - | chr6.4:19077419-19077438 | MS.gene41953:intron | 30.0% |
| !! | CCAATTCCAAAAGTTGTTTT+AGG | - | chr6.4:19077172-19077191 | MS.gene41953:CDS | 30.0% |
| !! | TTCTGGAGTCATTTGAAATT+TGG | - | chr6.4:19079505-19079524 | MS.gene41953:CDS | 30.0% |
| !!! | CCTAAAACAACTTTTGGAAT+TGG | + | chr6.4:19077175-19077194 | None:intergenic | 30.0% |
| AACAGAACCGTAGTTAACAA+TGG | - | chr6.4:19078931-19078950 | MS.gene41953:CDS | 35.0% | |
| AAGCAAGTGCAAGCAAAAAA+GGG | + | chr6.4:19077588-19077607 | None:intergenic | 35.0% | |
| AATGATTATCAGGTTCTCTG+TGG | - | chr6.4:19078631-19078650 | MS.gene41953:CDS | 35.0% | |
| ATAATCATTCACTTACCGGT+TGG | + | chr6.4:19078620-19078639 | None:intergenic | 35.0% | |
| CCTGATAATCATTCACTTAC+CGG | + | chr6.4:19078624-19078643 | None:intergenic | 35.0% | |
| CTTCTGAATCATGGTTCAAT+TGG | + | chr6.4:19079027-19079046 | None:intergenic | 35.0% | |
| GAACCAACCATTGTTAACTA+CGG | + | chr6.4:19078941-19078960 | None:intergenic | 35.0% | |
| GAATAATGAGACATTGTAGC+TGG | + | chr6.4:19077859-19077878 | None:intergenic | 35.0% | |
| GATACATCAGATCGAAAAGA+TGG | + | chr6.4:19079266-19079285 | None:intergenic | 35.0% | |
| GGAATGTTTATCACAGTAGA+CGG | - | chr6.4:19078464-19078483 | MS.gene41953:CDS | 35.0% | |
| GGTTTCTAAATTGTAAGGGT+AGG | + | chr6.4:19078693-19078712 | None:intergenic | 35.0% | |
| GTCAATGTGTATGATAGGTT+TGG | + | chr6.4:19079484-19079503 | None:intergenic | 35.0% | |
| GTTCTACCAATTGGTAGAAA+TGG | + | chr6.4:19077247-19077266 | None:intergenic | 35.0% | |
| TGGAATTCCAAGTGCTTTAT+GGG | - | chr6.4:19078499-19078518 | MS.gene41953:CDS | 35.0% | |
| TGTTCTATCTACTTCGACAA+CGG | + | chr6.4:19078112-19078131 | None:intergenic | 35.0% | |
| TTGGAAAAGTAAAGGAGCAA+AGG | - | chr6.4:19077438-19077457 | MS.gene41953:intron | 35.0% | |
| TTGTTAACTACGGTTCTGTT+TGG | + | chr6.4:19078931-19078950 | None:intergenic | 35.0% | |
| ! | ACAGCGATAACAAGATTTTG+AGG | + | chr6.4:19077652-19077671 | None:intergenic | 35.0% |
| ! | ATGTTGATTGCAATGCTTCT+TGG | - | chr6.4:19078234-19078253 | MS.gene41953:CDS | 35.0% |
| ! | CAGCGATAACAAGATTTTGA+GGG | + | chr6.4:19077651-19077670 | None:intergenic | 35.0% |
| ! | CATAAGCATTGCACCTAAAA+GGG | + | chr6.4:19077278-19077297 | None:intergenic | 35.0% |
| ! | TCATTCGGAGAGTTTTTGTT+TGG | - | chr6.4:19077685-19077704 | MS.gene41953:intron | 35.0% |
| ! | TGATTTGGCATCTCAAACAA+AGG | - | chr6.4:19078065-19078084 | MS.gene41953:intron | 35.0% |
| !! | AGATTTTGAGGGTTACCAAT+TGG | + | chr6.4:19077640-19077659 | None:intergenic | 35.0% |
| !! | TTAACAATGGTTGGTTCGTT+CGG | - | chr6.4:19078944-19078963 | MS.gene41953:CDS | 35.0% |
| !!! | AGGACATGTTTTGATCACTT+CGG | - | chr6.4:19078137-19078156 | MS.gene41953:CDS | 35.0% |
| !!! | AGGAGAGTTTTGAATACTAG+AGG | + | chr6.4:19077926-19077945 | None:intergenic | 35.0% |
| AAGTGCTTTATGGGAGTTGA+TGG | - | chr6.4:19078508-19078527 | MS.gene41953:CDS | 40.0% | |
| AGATATCGAGGATCCTATTG+CGG | - | chr6.4:19077792-19077811 | MS.gene41953:intron | 40.0% | |
| ATTGGTAGAAATGGAACTGC+TGG | + | chr6.4:19077238-19077257 | None:intergenic | 40.0% | |
| ATTGTTCCAGCTATGCTTGT+AGG | - | chr6.4:19077709-19077728 | MS.gene41953:intron | 40.0% | |
| CATTGAACCAGAAGTCGAAA+TGG | + | chr6.4:19079072-19079091 | None:intergenic | 40.0% | |
| CCGGTAAGTGAATGATTATC+AGG | - | chr6.4:19078621-19078640 | MS.gene41953:CDS | 40.0% | |
| CGCTATCACTCGAAATCATT+CGG | + | chr6.4:19077969-19077988 | None:intergenic | 40.0% | |
| CTGGAATTCCAAGTGCTTTA+TGG | - | chr6.4:19078498-19078517 | MS.gene41953:CDS | 40.0% | |
| CTTGCTTCAAGTGCTAACAT+CGG | - | chr6.4:19077601-19077620 | MS.gene41953:intron | 40.0% | |
| GAACCGTAGTTAACAATGGT+TGG | - | chr6.4:19078935-19078954 | MS.gene41953:CDS | 40.0% | |
| GAAGCAAGTGCAAGCAAAAA+AGG | + | chr6.4:19077589-19077608 | None:intergenic | 40.0% | |
| GCAATCGATCTTCCAATTCT+CGG | - | chr6.4:19077337-19077356 | MS.gene41953:CDS | 40.0% | |
| GCAGTTCCATTTCTACCAAT+TGG | - | chr6.4:19077238-19077257 | MS.gene41953:CDS | 40.0% | |
| TGAATGCATCAACTTGTGGT+AGG | - | chr6.4:19078748-19078767 | MS.gene41953:CDS | 40.0% | |
| TTCCCAAGAAGACGAGAAAA+GGG | - | chr6.4:19079360-19079379 | MS.gene41953:CDS | 40.0% | |
| TTGGCATCAAATGTACCAAC+CGG | - | chr6.4:19078602-19078621 | MS.gene41953:CDS | 40.0% | |
| TTTCCCAAGAAGACGAGAAA+AGG | - | chr6.4:19079359-19079378 | MS.gene41953:CDS | 40.0% | |
| TTTGATCACTTCGGAAGGAA+AGG | - | chr6.4:19078146-19078165 | MS.gene41953:CDS | 40.0% | |
| TTTGGCATCTCAAACAAAGG+AGG | - | chr6.4:19078068-19078087 | MS.gene41953:intron | 40.0% | |
| ! | AATTTCGGCTGCATTAGCTT+TGG | - | chr6.4:19078278-19078297 | MS.gene41953:CDS | 40.0% |
| ! | ACTTCGACAACGGTTTTTGA+CGG | + | chr6.4:19078102-19078121 | None:intergenic | 40.0% |
| ! | ATCAACTCCCATAAAGCACT+TGG | + | chr6.4:19078509-19078528 | None:intergenic | 40.0% |
| ! | CCAATTCTCGGTCTTCTTTT+CGG | - | chr6.4:19077349-19077368 | MS.gene41953:CDS | 40.0% |
| ! | CCATAAGCATTGCACCTAAA+AGG | + | chr6.4:19077279-19077298 | None:intergenic | 40.0% |
| ! | CGAGTGATAGCGAAATTGAT+AGG | - | chr6.4:19077977-19077996 | MS.gene41953:intron | 40.0% |
| ! | GTAGACGGATTCAACAAAAC+TGG | - | chr6.4:19078479-19078498 | MS.gene41953:CDS | 40.0% |
| ! | TATGTCGTGGACTGCAATTT+CGG | - | chr6.4:19078263-19078282 | MS.gene41953:CDS | 40.0% |
| !! | ACGGTTCTGTTTGGTTCTAA+AGG | + | chr6.4:19078922-19078941 | None:intergenic | 40.0% |
| !! | CCTTTTAGGTGCAATGCTTA+TGG | - | chr6.4:19077276-19077295 | MS.gene41953:CDS | 40.0% |
| !! | CTTCTGGTTCAATGTTGGTT+TGG | - | chr6.4:19079078-19079097 | MS.gene41953:CDS | 40.0% |
| !! | TTCGACTTCTGGTTCAATGT+TGG | - | chr6.4:19079073-19079092 | MS.gene41953:CDS | 40.0% |
| !!! | CAATAGCCTTTGCCATTTTC+TGG | - | chr6.4:19077197-19077216 | MS.gene41953:CDS | 40.0% |
| !!! | CATGTTTTGATCACTTCGGA+AGG | - | chr6.4:19078141-19078160 | MS.gene41953:CDS | 40.0% |
| AAATGGACCAGAGGTCAAAC+CGG | + | chr6.4:19079055-19079074 | None:intergenic | 45.0% | |
| AAGAAGACGAGAAAAGGGCA+TGG | - | chr6.4:19079365-19079384 | MS.gene41953:CDS | 45.0% | |
| ACAACTCCTACAAGCATAGC+TGG | + | chr6.4:19077718-19077737 | None:intergenic | 45.0% | |
| AGTGCAAGCAAAAAAGGGTG+AGG | + | chr6.4:19077583-19077602 | None:intergenic | 45.0% | |
| CCATGATTCAGAAGTCTCAC+CGG | - | chr6.4:19079033-19079052 | MS.gene41953:CDS | 45.0% | |
| CCGAAAAGAAGACCGAGAAT+TGG | + | chr6.4:19077352-19077371 | None:intergenic | 45.0% | |
| CTACCAATTGGTAGAACAGC+AGG | - | chr6.4:19077250-19077269 | MS.gene41953:CDS | 45.0% | |
| GAACGATCAACTCGCGAATA+AGG | + | chr6.4:19078536-19078555 | None:intergenic | 45.0% | |
| GATCCTGCTGTTCTACCAAT+TGG | + | chr6.4:19077256-19077275 | None:intergenic | 45.0% | |
| TATGACGTGTGGATCGTCTT+CGG | + | chr6.4:19078714-19078733 | None:intergenic | 45.0% | |
| TGCTAGGCCAAGTTTAGAGA+AGG | - | chr6.4:19078320-19078339 | MS.gene41953:intron | 45.0% | |
| TGTTGTGAAATAGGCCAGTC+TGG | - | chr6.4:19078866-19078885 | MS.gene41953:CDS | 45.0% | |
| TTGTAAGGGTAGGAGAGACA+AGG | + | chr6.4:19078683-19078702 | None:intergenic | 45.0% | |
| ! | AAAGGACTGTGAACCGACTT+TGG | + | chr6.4:19078904-19078923 | None:intergenic | 45.0% |
| ! | AGAACAGCAGGATCCCTTTT+AGG | - | chr6.4:19077262-19077281 | MS.gene41953:CDS | 45.0% |
| ! | ATGCCCTTTTCTCGTCTTCT+TGG | + | chr6.4:19079366-19079385 | None:intergenic | 45.0% |
| ! | GAAAAGGGCATGGCTCATAT+TGG | - | chr6.4:19079375-19079394 | MS.gene41953:CDS | 45.0% |
| ! | TGCCCTTTTCTCGTCTTCTT+GGG | + | chr6.4:19079365-19079384 | None:intergenic | 45.0% |
| !! | AAGTGCTAACATCGGTTCCT+CGG | - | chr6.4:19077609-19077628 | MS.gene41953:intron | 45.0% |
| !!! | TTTAATATTTATTTGTTATT+TGG | - | chr6.4:19078974-19078993 | MS.gene41953:CDS | 5.0% |
| AGCAGGGAACCTGTCACTAT+TGG | - | chr6.4:19079414-19079433 | MS.gene41953:CDS | 50.0% | |
| ATTGCAGCGTACGCTTCTTC+CGG | + | chr6.4:19077322-19077341 | None:intergenic | 50.0% | |
| CAGAAGTCGAAATGGACCAG+AGG | + | chr6.4:19079064-19079083 | None:intergenic | 50.0% | |
| CAGCTGATCCCAATAGTGAC+AGG | + | chr6.4:19079426-19079445 | None:intergenic | 50.0% | |
| CCGGTGAGACTTCTGAATCA+TGG | + | chr6.4:19079036-19079055 | None:intergenic | 50.0% | |
| CTCTGGTCCATTTCGACTTC+TGG | - | chr6.4:19079062-19079081 | MS.gene41953:CDS | 50.0% | |
| CTTGGGTCAGCACTATAGCA+GGG | - | chr6.4:19079398-19079417 | MS.gene41953:CDS | 50.0% | |
| GCAAGCAAAAAAGGGTGAGG+AGG | + | chr6.4:19077580-19077599 | None:intergenic | 50.0% | |
| GCAGGGAACCTGTCACTATT+GGG | - | chr6.4:19079415-19079434 | MS.gene41953:CDS | 50.0% | |
| TCAGCTGCAACTTCCGCAAT+AGG | + | chr6.4:19077808-19077827 | None:intergenic | 50.0% | |
| TGTGAAATAGGCCAGTCTGG+CGG | - | chr6.4:19078869-19078888 | MS.gene41953:CDS | 50.0% | |
| TTGGGAAATTGCAGCTGCTG+AGG | + | chr6.4:19079347-19079366 | None:intergenic | 50.0% | |
| ! | CGGTCTTCTTTTCGGCACAA+TGG | - | chr6.4:19077357-19077376 | MS.gene41953:CDS | 50.0% |
| !! | AGGACTATTTAAGCGCCGAG+TGG | - | chr6.4:19078166-19078185 | MS.gene41953:CDS | 50.0% |
| !! | GGCATGGCTCATATTGGCTT+GGG | - | chr6.4:19079381-19079400 | MS.gene41953:CDS | 50.0% |
| !! | TCGCGAGTTGATCGTTCTAG+TGG | - | chr6.4:19078539-19078558 | MS.gene41953:CDS | 50.0% |
| CCACAGTCTACGCTTCCACT+CGG | + | chr6.4:19078184-19078203 | None:intergenic | 55.0% | |
| GCTTGGGTCAGCACTATAGC+AGG | - | chr6.4:19079397-19079416 | MS.gene41953:CDS | 55.0% | |
| GTTACCAATTGGCGTAGCCG+AGG | + | chr6.4:19077629-19077648 | None:intergenic | 55.0% | |
| ! | GCGGCTGGTTGAACCAAAGT+CGG | - | chr6.4:19078888-19078907 | MS.gene41953:CDS | 55.0% |
| ! | GGGCATGGCTCATATTGGCT+TGG | - | chr6.4:19079380-19079399 | MS.gene41953:CDS | 55.0% |
| !! | AGTCTCACCGGTTTGACCTC+TGG | - | chr6.4:19079045-19079064 | MS.gene41953:CDS | 55.0% |
| AAATAGGCCAGTCTGGCGGC+TGG | - | chr6.4:19078873-19078892 | MS.gene41953:CDS | 60.0% | |
| GGTTCCTCGGCTACGCCAAT+TGG | - | chr6.4:19077622-19077641 | MS.gene41953:intron | 60.0% | |
| ! | CCGAGTGGAAGCGTAGACTG+TGG | - | chr6.4:19078181-19078200 | MS.gene41953:CDS | 60.0% |
| GGTTCAACCAGCCGCCAGAC+TGG | + | chr6.4:19078883-19078902 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 19077160 | 19079579 | 19077160 | ID=MS.gene41953 |
| chr6.4 | mRNA | 19077160 | 19079579 | 19077160 | ID=MS.gene41953.t1;Parent=MS.gene41953 |
| chr6.4 | exon | 19078398 | 19079579 | 19078398 | ID=MS.gene41953.t1.exon1;Parent=MS.gene41953.t1 |
| chr6.4 | CDS | 19078398 | 19079579 | 19078398 | ID=cds.MS.gene41953.t1;Parent=MS.gene41953.t1 |
| chr6.4 | exon | 19078116 | 19078305 | 19078116 | ID=MS.gene41953.t1.exon2;Parent=MS.gene41953.t1 |
| chr6.4 | CDS | 19078116 | 19078305 | 19078116 | ID=cds.MS.gene41953.t1;Parent=MS.gene41953.t1 |
| chr6.4 | exon | 19077160 | 19077422 | 19077160 | ID=MS.gene41953.t1.exon3;Parent=MS.gene41953.t1 |
| chr6.4 | CDS | 19077160 | 19077422 | 19077160 | ID=cds.MS.gene41953.t1;Parent=MS.gene41953.t1 |
| Gene Sequence |
| Protein sequence |
