Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060010.t1 | XP_013452135.1 | 97.4 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 1.00E-284 | 988.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060010.t1 | Q9AV23 | 52.8 | 544 | 192 | 4 | 1 | 543 | 1 | 480 | 3.3e-143 | 510.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060010.t1 | A0A072UAN3 | 97.4 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 7.2e-285 | 988.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055701 | MS.gene060010 | 0.801868 | 7.35E-49 | -1.69E-46 |
| MS.gene058898 | MS.gene060010 | 0.878175 | 3.47E-69 | -1.69E-46 |
| MS.gene060010 | MS.gene060011 | 0.800835 | 1.20E-48 | -1.69E-46 |
| MS.gene060010 | MS.gene066830 | -0.810426 | 1.16E-50 | -1.69E-46 |
| MS.gene060010 | MS.gene071540 | 0.816614 | 5.05E-52 | -1.69E-46 |
| MS.gene060010 | MS.gene072375 | -0.816255 | 6.08E-52 | -1.69E-46 |
| MS.gene060010 | MS.gene20723 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene060010 | MS.gene28862 | 0.805634 | 1.21E-49 | -1.69E-46 |
| MS.gene060010 | MS.gene40743 | 0.804144 | 2.49E-49 | -1.69E-46 |
| MS.gene060010 | MS.gene41953 | 0.940563 | 1.88E-100 | -1.69E-46 |
| MS.gene060010 | MS.gene75598 | -0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene060010 | MS.gene90387 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene060010 | MS.gene90428 | 0.802257 | 6.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060010.t1 | MTR_6g045483 | 97.426 | 544 | 8 | 1 | 1 | 544 | 1 | 538 | 0.0 | 1063 |
| MS.gene060010.t1 | MTR_8g038580 | 93.750 | 544 | 34 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1018 |
| MS.gene060010.t1 | MTR_6g045483 | 96.522 | 460 | 10 | 1 | 1 | 460 | 1 | 454 | 0.0 | 894 |
| MS.gene060010.t1 | MTR_6g045483 | 96.937 | 457 | 8 | 1 | 1 | 457 | 1 | 451 | 0.0 | 894 |
| MS.gene060010.t1 | MTR_6g045483 | 96.447 | 394 | 8 | 1 | 1 | 394 | 1 | 388 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060010.t1 | AT1G02260 | 67.336 | 548 | 129 | 6 | 1 | 544 | 1 | 502 | 0.0 | 728 |
| MS.gene060010.t1 | AT1G02260 | 67.336 | 548 | 129 | 6 | 1 | 544 | 1 | 502 | 0.0 | 728 |
Find 83 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATTCCAAGTGCTTTA+TGG | 0.120821 | 6.3:-40418924 | MS.gene060010:CDS |
| TATACTTGTCCTATCAAATT+TGG | 0.181249 | 6.3:-40418839 | MS.gene060010:CDS |
| TTCTGGAGTCATTTGAAATT+TGG | 0.188552 | 6.3:-40417917 | MS.gene060010:CDS |
| CCATAAGCATTGCACCTAAA+AGG | 0.208915 | 6.3:+40420146 | None:intergenic |
| ACATAGGAAAATTACTTTCT+TGG | 0.213251 | 6.3:-40420003 | MS.gene060010:CDS |
| ATTGAACCTAAAACAACTTT+TGG | 0.239033 | 6.3:+40420244 | None:intergenic |
| GAACGATCAACTCGCGAATA+AGG | 0.283924 | 6.3:+40418889 | None:intergenic |
| TTGTAGAATCTGTTTGATTT+CGG | 0.307692 | 6.3:-40419954 | MS.gene060010:CDS |
| TGTGTTTATATGATTACATT+AGG | 0.308469 | 6.3:-40419212 | MS.gene060010:CDS |
| ACTATTATAGTTACTGCTAT+TGG | 0.314024 | 6.3:-40417884 | MS.gene060010:CDS |
| TGGAATTCCAAGTGCTTTAT+GGG | 0.317249 | 6.3:-40418923 | MS.gene060010:CDS |
| TATCATACACATTGACATTC+TGG | 0.318666 | 6.3:-40417934 | MS.gene060010:CDS |
| CATTTGATGCCAAATTTGAT+AGG | 0.320948 | 6.3:+40418830 | None:intergenic |
| CGCTATCACTTGAAATCATT+CGG | 0.331547 | 6.3:+40419456 | None:intergenic |
| TCAGCTGCAACTTCCGCAAT+AGG | 0.340152 | 6.3:+40419617 | None:intergenic |
| AGCAGGGAACCTGTCACTAT+TGG | 0.345978 | 6.3:-40418008 | MS.gene060010:CDS |
| AAGTGCTTTATGGGAGTTGA+TGG | 0.347243 | 6.3:-40418914 | MS.gene060010:CDS |
| GTTCTACCAATTGGTAGAAA+TGG | 0.355990 | 6.3:+40420178 | None:intergenic |
| AGAAGGGACTAATAATGATT+TGG | 0.366413 | 6.3:-40419372 | MS.gene060010:CDS |
| GGTTCCTCGGCTACGCCAAT+TGG | 0.379953 | 6.3:-40419800 | MS.gene060010:CDS |
| ATTGTTCCAGCTATGCTTGT+AGG | 0.381023 | 6.3:-40419713 | MS.gene060010:CDS |
| TGATTCTTATAGCTATGTAT+TGG | 0.385215 | 6.3:-40419673 | MS.gene060010:CDS |
| ATTGCAGCGTACGCTTCTTC+CGG | 0.394105 | 6.3:+40420103 | None:intergenic |
| TATGTCGTGGACTGCAATTT+CGG | 0.400089 | 6.3:-40419159 | MS.gene060010:CDS |
| CAAGTGATAGCGAAATTGAT+AGG | 0.401436 | 6.3:-40419445 | MS.gene060010:CDS |
| GCAATCGATCTTCCGATTCT+CGG | 0.414233 | 6.3:-40420085 | MS.gene060010:CDS |
| GCAGTTCCATTTCTACCAAT+TGG | 0.420465 | 6.3:-40420184 | MS.gene060010:CDS |
| GTAGACGGATTCAACAAAAC+TGG | 0.421350 | 6.3:-40418943 | MS.gene060010:CDS |
| TTTCCCAAGAAGACGAGAAA+AGG | 0.423803 | 6.3:-40418063 | MS.gene060010:CDS |
| ATGTTGATTGCAATGCTTCT+TGG | 0.424623 | 6.3:-40419188 | MS.gene060010:CDS |
| AGAATGTCAATGTGTATGAT+AGG | 0.432270 | 6.3:+40417936 | None:intergenic |
| GCAGGGAACCTGTCACTATT+GGG | 0.435913 | 6.3:-40418007 | MS.gene060010:CDS |
| GAAAAGGGCATGGCTCATAT+TGG | 0.444360 | 6.3:-40418047 | MS.gene060010:CDS |
| CTTAATTCTCAAGAGTTGAA+TGG | 0.444464 | 6.3:-40419536 | MS.gene060010:CDS |
| TTTAGTACCTTCTCTAAACT+TGG | 0.448984 | 6.3:+40419095 | None:intergenic |
| CATAAGCATTGCACCTAAAA+GGG | 0.451280 | 6.3:+40420147 | None:intergenic |
| TTACTTTCTTGGAAAAGTAA+AGG | 0.451454 | 6.3:-40419992 | MS.gene060010:CDS |
| AATTTCGGCTGCATTAGCTT+TGG | 0.452114 | 6.3:-40419144 | MS.gene060010:CDS |
| GTCGAGAGTAAAATTTCATT+CGG | 0.459818 | 6.3:-40419752 | MS.gene060010:CDS |
| GTCAATGTGTATGATAGGTT+TGG | 0.462325 | 6.3:+40417941 | None:intergenic |
| CCGAAAAGAAGACCGAGAAT+CGG | 0.464690 | 6.3:+40420073 | None:intergenic |
| ACAACTCCTACAAGCATAGC+TGG | 0.466657 | 6.3:+40419707 | None:intergenic |
| GCTTGGGTCAGCACTATAGC+AGG | 0.474992 | 6.3:-40418025 | MS.gene060010:CDS |
| ATTGGTAGAAATGGAACTGC+TGG | 0.479127 | 6.3:+40420187 | None:intergenic |
| CTACCAATTGGTAGAACAGC+AGG | 0.479216 | 6.3:-40420172 | MS.gene060010:CDS |
| GAAGTAGATAGAACAATAGA+AGG | 0.481433 | 6.3:-40419305 | MS.gene060010:CDS |
| GATCCTGCTGTTCTACCAAT+TGG | 0.482125 | 6.3:+40420169 | None:intergenic |
| GGCATGGCTCATATTGGCTT+GGG | 0.482781 | 6.3:-40418041 | MS.gene060010:CDS |
| AATTCAACTGCATCAAAAGA+AGG | 0.484658 | 6.3:-40419389 | MS.gene060010:CDS |
| GGGCATGGCTCATATTGGCT+TGG | 0.487511 | 6.3:-40418042 | MS.gene060010:CDS |
| GCAGTAACTATAATAGTTGA+AGG | 0.493622 | 6.3:+40417890 | None:intergenic |
| TTCCCAAGAAGACGAGAAAA+GGG | 0.509066 | 6.3:-40418062 | MS.gene060010:CDS |
| TTGGGAAATTGCAGCTGCTG+AGG | 0.511779 | 6.3:+40418078 | None:intergenic |
| TTGGCATCAAATGTACCAAC+CGG | 0.512398 | 6.3:-40418820 | MS.gene060010:intron |
| TCGCGAGTTGATCGTTCTAG+TGG | 0.516278 | 6.3:-40418883 | MS.gene060010:CDS |
| CAGCTGATCCCAATAGTGAC+AGG | 0.519036 | 6.3:+40417999 | None:intergenic |
| AAGTGCTAACATCGGTTCCT+CGG | 0.528951 | 6.3:-40419813 | MS.gene060010:CDS |
| TTTCGTAGATTATGAACTTG+AGG | 0.530794 | 6.3:+40419479 | None:intergenic |
| TTGGAAAAGTAAAGGAGCAA+AGG | 0.533404 | 6.3:-40419984 | MS.gene060010:CDS |
| TGTTCTATCTACTTCGACAA+CGG | 0.538660 | 6.3:+40419313 | None:intergenic |
| GAATAATGAGACATTGTAGC+TGG | 0.539645 | 6.3:+40419566 | None:intergenic |
| ATCAACTCCCATAAAGCACT+TGG | 0.541024 | 6.3:+40418916 | None:intergenic |
| TGATTTGGCATCTCAAACAA+AGG | 0.541519 | 6.3:-40419357 | MS.gene060010:CDS |
| TTTGATCAGTTCGGAAGGAA+AGG | 0.549142 | 6.3:-40419276 | MS.gene060010:CDS |
| TTCTTGATTTCAAAGATGCT+AGG | 0.551545 | 6.3:-40419118 | MS.gene060010:CDS |
| TTCTTGGTTTAAATATGTCG+TGG | 0.568745 | 6.3:-40419172 | MS.gene060010:CDS |
| GCAGATATGTTCAAATACAT+AGG | 0.569867 | 6.3:-40420019 | MS.gene060010:CDS |
| GGAATGTTTATCACAGTAGA+CGG | 0.571373 | 6.3:-40418958 | MS.gene060010:CDS |
| ATTCAACTGCATCAAAAGAA+GGG | 0.589713 | 6.3:-40419388 | MS.gene060010:CDS |
| TGCTAGGCCAAGTTTAGAGA+AGG | 0.593210 | 6.3:-40419102 | MS.gene060010:intron |
| GAAATTGATAGGTTTCATGT+TGG | 0.608915 | 6.3:-40419434 | MS.gene060010:CDS |
| AATATTCAGAGTTATTACTC+CGG | 0.627366 | 6.3:-40420122 | MS.gene060010:CDS |
| ATCTGTTCATAAAGATATCG+AGG | 0.627397 | 6.3:-40419642 | MS.gene060010:CDS |
| GTTACCAATTGGCGTAGCCG+AGG | 0.632022 | 6.3:+40419796 | None:intergenic |
| CAGTAACTATAATAGTTGAA+GGG | 0.641516 | 6.3:+40417891 | None:intergenic |
| TAATATCCAGAAAATTGCAA+AGG | 0.641731 | 6.3:+40420219 | None:intergenic |
| AAGAAGACGAGAAAAGGGCA+TGG | 0.651383 | 6.3:-40418057 | MS.gene060010:CDS |
| AGATATCGAGGATCCTATTG+CGG | 0.653537 | 6.3:-40419630 | MS.gene060010:CDS |
| TTTGGCATCTCAAACAAAGG+AGG | 0.664262 | 6.3:-40419354 | MS.gene060010:CDS |
| CTGAGTGGAAGCGTAGACTG+TGG | 0.666710 | 6.3:-40419241 | MS.gene060010:CDS |
| CTTGCTTCAAGTGCTAACAT+CGG | 0.673429 | 6.3:-40419821 | MS.gene060010:CDS |
| AGGACTGTTTAAGCGCTGAG+TGG | 0.679075 | 6.3:-40419256 | MS.gene060010:CDS |
| CTTGGGTCAGCACTATAGCA+GGG | 0.686858 | 6.3:-40418024 | MS.gene060010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTCTAAAATTTTCA+AGG | + | chr6.3:40419934-40419953 | None:intergenic | 15.0% |
| !! | ATCATTAATCTCCAATTTAA+AGG | - | chr6.3:40419515-40419534 | MS.gene060010:CDS | 20.0% |
| !! | TAAAAATGTAAACACAAGAT+TGG | + | chr6.3:40419999-40420018 | None:intergenic | 20.0% |
| !! | TGTGTTTATATGATTACATT+AGG | - | chr6.3:40418915-40418934 | MS.gene060010:CDS | 20.0% |
| !!! | ATTCTTTTTTTTTTTTCCGT+AGG | - | chr6.3:40419491-40419510 | MS.gene060010:CDS | 20.0% |
| !!! | ATTTGATTTCACCTTTAAAT+TGG | + | chr6.3:40419529-40419548 | None:intergenic | 20.0% |
| !!! | ATTTTTATAGTACTATTGCT+TGG | - | chr6.3:40420012-40420031 | MS.gene060010:CDS | 20.0% |
| ! | AATATTCAGAGTTATTACTC+CGG | - | chr6.3:40418005-40418024 | MS.gene060010:CDS | 25.0% |
| ! | ACATAGGAAAATTACTTTCT+TGG | - | chr6.3:40418124-40418143 | MS.gene060010:intron | 25.0% |
| ! | ACTAAAAAACTATGAACACT+TGG | - | chr6.3:40419049-40419068 | MS.gene060010:intron | 25.0% |
| ! | ACTATTATAGTTACTGCTAT+TGG | - | chr6.3:40420243-40420262 | MS.gene060010:CDS | 25.0% |
| ! | CAGTAACTATAATAGTTGAA+GGG | + | chr6.3:40420239-40420258 | None:intergenic | 25.0% |
| ! | TAATATCCAGAAAATTGCAA+AGG | + | chr6.3:40417911-40417930 | None:intergenic | 25.0% |
| ! | TATACTTGTCCTATCAAATT+TGG | - | chr6.3:40419288-40419307 | MS.gene060010:CDS | 25.0% |
| ! | TGATTCTTATAGCTATGTAT+TGG | - | chr6.3:40418454-40418473 | MS.gene060010:intron | 25.0% |
| ! | TTACTTTCTTGGAAAAGTAA+AGG | - | chr6.3:40418135-40418154 | MS.gene060010:intron | 25.0% |
| ! | TTATGTTAGTGTTGTGAAAT+AGG | - | chr6.3:40419562-40419581 | MS.gene060010:CDS | 25.0% |
| !! | ATTGAACCTAAAACAACTTT+TGG | + | chr6.3:40417886-40417905 | None:intergenic | 25.0% |
| !! | TTGTAGAATCTGTTTGATTT+CGG | - | chr6.3:40418173-40418192 | MS.gene060010:intron | 25.0% |
| !!! | AAATTTTCAAGGAAATGAAG+AGG | + | chr6.3:40419923-40419942 | None:intergenic | 25.0% |
| !!! | TCACTTTTGATATTCTTTTG+TGG | - | chr6.3:40419148-40419167 | MS.gene060010:CDS | 25.0% |
| AAACCAACCATTGTTAACTA+CGG | + | chr6.3:40419646-40419665 | None:intergenic | 30.0% | |
| AATTCAACTGCATCAAAAGA+AGG | - | chr6.3:40418738-40418757 | MS.gene060010:intron | 30.0% | |
| ACATAAAATCATATGACGTG+TGG | + | chr6.3:40419430-40419449 | None:intergenic | 30.0% | |
| AGAAGGGACTAATAATGATT+TGG | - | chr6.3:40418755-40418774 | MS.gene060010:intron | 30.0% | |
| AGAATGTCAATGTGTATGAT+AGG | + | chr6.3:40420194-40420213 | None:intergenic | 30.0% | |
| ATCTGTTCATAAAGATATCG+AGG | - | chr6.3:40418485-40418504 | MS.gene060010:intron | 30.0% | |
| ATTCAACTGCATCAAAAGAA+GGG | - | chr6.3:40418739-40418758 | MS.gene060010:intron | 30.0% | |
| CATTTGATGCCAAATTTGAT+AGG | + | chr6.3:40419300-40419319 | None:intergenic | 30.0% | |
| CTTAATTCTCAAGAGTTGAA+TGG | - | chr6.3:40418591-40418610 | MS.gene060010:intron | 30.0% | |
| CTTCGGTTTCTAAATTGTAA+GGG | + | chr6.3:40419402-40419421 | None:intergenic | 30.0% | |
| GAAATTGATAGGTTTCATGT+TGG | - | chr6.3:40418693-40418712 | MS.gene060010:intron | 30.0% | |
| GAAGTAGATAGAACAATAGA+AGG | - | chr6.3:40418822-40418841 | MS.gene060010:CDS | 30.0% | |
| GCAGATATGTTCAAATACAT+AGG | - | chr6.3:40418108-40418127 | MS.gene060010:CDS | 30.0% | |
| GCAGTAACTATAATAGTTGA+AGG | + | chr6.3:40420240-40420259 | None:intergenic | 30.0% | |
| GGAAATGAAGAGGAAATATT+TGG | + | chr6.3:40419913-40419932 | None:intergenic | 30.0% | |
| GTCGAGAGTAAAATTTCATT+CGG | - | chr6.3:40418375-40418394 | MS.gene060010:intron | 30.0% | |
| GTTCAACTATGTTTCAACTA+TGG | - | chr6.3:40419701-40419720 | MS.gene060010:CDS | 30.0% | |
| TAATTGAATGCATCAACTTG+TGG | - | chr6.3:40419449-40419468 | MS.gene060010:CDS | 30.0% | |
| TATCATACACATTGACATTC+TGG | - | chr6.3:40420193-40420212 | MS.gene060010:CDS | 30.0% | |
| TCTTCGGTTTCTAAATTGTA+AGG | + | chr6.3:40419403-40419422 | None:intergenic | 30.0% | |
| TTCACAACACTAACATAACA+TGG | + | chr6.3:40419560-40419579 | None:intergenic | 30.0% | |
| TTCTTGATTTCAAAGATGCT+AGG | - | chr6.3:40419009-40419028 | MS.gene060010:intron | 30.0% | |
| TTCTTGGTTTAAATATGTCG+TGG | - | chr6.3:40418955-40418974 | MS.gene060010:CDS | 30.0% | |
| TTGGAGATTAATGATTCCTA+CGG | + | chr6.3:40419510-40419529 | None:intergenic | 30.0% | |
| TTTAGTACCTTCTCTAAACT+TGG | + | chr6.3:40419035-40419054 | None:intergenic | 30.0% | |
| TTTCGTAGATTATGAACTTG+AGG | + | chr6.3:40418651-40418670 | None:intergenic | 30.0% | |
| ! | AATTTTTCTCTTGTTGCTAC+AGG | - | chr6.3:40419117-40419136 | MS.gene060010:CDS | 30.0% |
| !! | CCAATTCCAAAAGTTGTTTT+AGG | - | chr6.3:40417877-40417896 | MS.gene060010:CDS | 30.0% |
| !! | TTAACAATGGTTGGTTTGTT+CGG | - | chr6.3:40419649-40419668 | MS.gene060010:CDS | 30.0% |
| !! | TTCTGGAGTCATTTGAAATT+TGG | - | chr6.3:40420210-40420229 | MS.gene060010:CDS | 30.0% |
| !!! | CCTAAAACAACTTTTGGAAT+TGG | + | chr6.3:40417880-40417899 | None:intergenic | 30.0% |
| AACAGAACCGTAGTTAACAA+TGG | - | chr6.3:40419636-40419655 | MS.gene060010:CDS | 35.0% | |
| AAGCAAGTGCAAGCAAAAAA+GGG | + | chr6.3:40418293-40418312 | None:intergenic | 35.0% | |
| AATGATTATCAGGTTCTCTG+TGG | - | chr6.3:40419336-40419355 | MS.gene060010:CDS | 35.0% | |
| ATAATCATTCACTTACCGGT+TGG | + | chr6.3:40419325-40419344 | None:intergenic | 35.0% | |
| CCTGATAATCATTCACTTAC+CGG | + | chr6.3:40419329-40419348 | None:intergenic | 35.0% | |
| CGCTATCACTTGAAATCATT+CGG | + | chr6.3:40418674-40418693 | None:intergenic | 35.0% | |
| CTTCTGAATCATGGTTCAAT+TGG | + | chr6.3:40419732-40419751 | None:intergenic | 35.0% | |
| GAATAATGAGACATTGTAGC+TGG | + | chr6.3:40418564-40418583 | None:intergenic | 35.0% | |
| GATACATCAGATCGAAAAGA+TGG | + | chr6.3:40419971-40419990 | None:intergenic | 35.0% | |
| GGAATGTTTATCACAGTAGA+CGG | - | chr6.3:40419169-40419188 | MS.gene060010:CDS | 35.0% | |
| GGTTTCTAAATTGTAAGGGT+AGG | + | chr6.3:40419398-40419417 | None:intergenic | 35.0% | |
| GTCAATGTGTATGATAGGTT+TGG | + | chr6.3:40420189-40420208 | None:intergenic | 35.0% | |
| GTTCTACCAATTGGTAGAAA+TGG | + | chr6.3:40417952-40417971 | None:intergenic | 35.0% | |
| TGGAATTCCAAGTGCTTTAT+GGG | - | chr6.3:40419204-40419223 | MS.gene060010:CDS | 35.0% | |
| TGTTCTATCTACTTCGACAA+CGG | + | chr6.3:40418817-40418836 | None:intergenic | 35.0% | |
| TTGGAAAAGTAAAGGAGCAA+AGG | - | chr6.3:40418143-40418162 | MS.gene060010:intron | 35.0% | |
| TTGTTAACTACGGTTCTGTT+TGG | + | chr6.3:40419636-40419655 | None:intergenic | 35.0% | |
| ! | ACAGCGATAACAAGATTTTG+AGG | + | chr6.3:40418357-40418376 | None:intergenic | 35.0% |
| ! | ATGTTGATTGCAATGCTTCT+TGG | - | chr6.3:40418939-40418958 | MS.gene060010:CDS | 35.0% |
| ! | CAAGTGATAGCGAAATTGAT+AGG | - | chr6.3:40418682-40418701 | MS.gene060010:intron | 35.0% |
| ! | CAATAGCCTTTGCAATTTTC+TGG | - | chr6.3:40417902-40417921 | MS.gene060010:CDS | 35.0% |
| ! | CAGCGATAACAAGATTTTGA+GGG | + | chr6.3:40418356-40418375 | None:intergenic | 35.0% |
| ! | CATAAGCATTGCACCTAAAA+GGG | + | chr6.3:40417983-40418002 | None:intergenic | 35.0% |
| ! | TCATTCGGAGAGTTTTTGTT+TGG | - | chr6.3:40418390-40418409 | MS.gene060010:intron | 35.0% |
| ! | TGATTTGGCATCTCAAACAA+AGG | - | chr6.3:40418770-40418789 | MS.gene060010:intron | 35.0% |
| !! | AGATTTTGAGGGTTACCAAT+TGG | + | chr6.3:40418345-40418364 | None:intergenic | 35.0% |
| !!! | AGGACATGTTTTGATCAGTT+CGG | - | chr6.3:40418842-40418861 | MS.gene060010:CDS | 35.0% |
| AAGTGCTTTATGGGAGTTGA+TGG | - | chr6.3:40419213-40419232 | MS.gene060010:CDS | 40.0% | |
| AGATATCGAGGATCCTATTG+CGG | - | chr6.3:40418497-40418516 | MS.gene060010:intron | 40.0% | |
| ATTGGTAGAAATGGAACTGC+TGG | + | chr6.3:40417943-40417962 | None:intergenic | 40.0% | |
| ATTGTTCCAGCTATGCTTGT+AGG | - | chr6.3:40418414-40418433 | MS.gene060010:intron | 40.0% | |
| CATTGAACCAGAAGTCGAAA+TGG | + | chr6.3:40419777-40419796 | None:intergenic | 40.0% | |
| CCGGTAAGTGAATGATTATC+AGG | - | chr6.3:40419326-40419345 | MS.gene060010:CDS | 40.0% | |
| CTGGAATTCCAAGTGCTTTA+TGG | - | chr6.3:40419203-40419222 | MS.gene060010:CDS | 40.0% | |
| CTTGCTTCAAGTGCTAACAT+CGG | - | chr6.3:40418306-40418325 | MS.gene060010:intron | 40.0% | |
| GAACCGTAGTTAACAATGGT+TGG | - | chr6.3:40419640-40419659 | MS.gene060010:CDS | 40.0% | |
| GAAGCAAGTGCAAGCAAAAA+AGG | + | chr6.3:40418294-40418313 | None:intergenic | 40.0% | |
| GCAGTTCCATTTCTACCAAT+TGG | - | chr6.3:40417943-40417962 | MS.gene060010:CDS | 40.0% | |
| TGAATGCATCAACTTGTGGT+AGG | - | chr6.3:40419453-40419472 | MS.gene060010:CDS | 40.0% | |
| TTCCCAAGAAGACGAGAAAA+GGG | - | chr6.3:40420065-40420084 | MS.gene060010:CDS | 40.0% | |
| TTGGCATCAAATGTACCAAC+CGG | - | chr6.3:40419307-40419326 | MS.gene060010:CDS | 40.0% | |
| TTTCCCAAGAAGACGAGAAA+AGG | - | chr6.3:40420064-40420083 | MS.gene060010:CDS | 40.0% | |
| TTTGATCAGTTCGGAAGGAA+AGG | - | chr6.3:40418851-40418870 | MS.gene060010:CDS | 40.0% | |
| TTTGGCATCTCAAACAAAGG+AGG | - | chr6.3:40418773-40418792 | MS.gene060010:intron | 40.0% | |
| ! | AATTTCGGCTGCATTAGCTT+TGG | - | chr6.3:40418983-40419002 | MS.gene060010:CDS | 40.0% |
| ! | ACTTCGACAACGGTTTTTGA+CGG | + | chr6.3:40418807-40418826 | None:intergenic | 40.0% |
| ! | ATCAACTCCCATAAAGCACT+TGG | + | chr6.3:40419214-40419233 | None:intergenic | 40.0% |
| ! | CCATAAGCATTGCACCTAAA+AGG | + | chr6.3:40417984-40418003 | None:intergenic | 40.0% |
| ! | GTAGACGGATTCAACAAAAC+TGG | - | chr6.3:40419184-40419203 | MS.gene060010:CDS | 40.0% |
| ! | TATGTCGTGGACTGCAATTT+CGG | - | chr6.3:40418968-40418987 | MS.gene060010:CDS | 40.0% |
| !! | ACGGTTCTGTTTGGTTCTAA+AGG | + | chr6.3:40419627-40419646 | None:intergenic | 40.0% |
| !! | CCTTTTAGGTGCAATGCTTA+TGG | - | chr6.3:40417981-40418000 | MS.gene060010:CDS | 40.0% |
| !! | CTTCTGGTTCAATGTTGGTT+TGG | - | chr6.3:40419783-40419802 | MS.gene060010:CDS | 40.0% |
| !! | TTCGACTTCTGGTTCAATGT+TGG | - | chr6.3:40419778-40419797 | MS.gene060010:CDS | 40.0% |
| !!! | CATGTTTTGATCAGTTCGGA+AGG | - | chr6.3:40418846-40418865 | MS.gene060010:CDS | 40.0% |
| AAATGGACCAGAGGTCAAAC+CGG | + | chr6.3:40419760-40419779 | None:intergenic | 45.0% | |
| AAGAAGACGAGAAAAGGGCA+TGG | - | chr6.3:40420070-40420089 | MS.gene060010:CDS | 45.0% | |
| ACAACTCCTACAAGCATAGC+TGG | + | chr6.3:40418423-40418442 | None:intergenic | 45.0% | |
| AGTGCAAGCAAAAAAGGGTG+AGG | + | chr6.3:40418288-40418307 | None:intergenic | 45.0% | |
| CCATGATTCAGAAGTCTCAC+CGG | - | chr6.3:40419738-40419757 | MS.gene060010:CDS | 45.0% | |
| CCGAAAAGAAGACCGAGAAT+CGG | + | chr6.3:40418057-40418076 | None:intergenic | 45.0% | |
| CTACCAATTGGTAGAACAGC+AGG | - | chr6.3:40417955-40417974 | MS.gene060010:CDS | 45.0% | |
| GAACGATCAACTCGCGAATA+AGG | + | chr6.3:40419241-40419260 | None:intergenic | 45.0% | |
| GATCCTGCTGTTCTACCAAT+TGG | + | chr6.3:40417961-40417980 | None:intergenic | 45.0% | |
| GCAATCGATCTTCCGATTCT+CGG | - | chr6.3:40418042-40418061 | MS.gene060010:CDS | 45.0% | |
| TATGACGTGTGGATCGTCTT+CGG | + | chr6.3:40419419-40419438 | None:intergenic | 45.0% | |
| TGCTAGGCCAAGTTTAGAGA+AGG | - | chr6.3:40419025-40419044 | MS.gene060010:intron | 45.0% | |
| TGTTGTGAAATAGGCCAGTC+TGG | - | chr6.3:40419571-40419590 | MS.gene060010:CDS | 45.0% | |
| TTGTAAGGGTAGGAGAGACA+AGG | + | chr6.3:40419388-40419407 | None:intergenic | 45.0% | |
| ! | AGAACAGCAGGATCCCTTTT+AGG | - | chr6.3:40417967-40417986 | MS.gene060010:CDS | 45.0% |
| ! | ATGCCCTTTTCTCGTCTTCT+TGG | + | chr6.3:40420071-40420090 | None:intergenic | 45.0% |
| ! | CCGATTCTCGGTCTTCTTTT+CGG | - | chr6.3:40418054-40418073 | MS.gene060010:CDS | 45.0% |
| ! | GAAAAGGGCATGGCTCATAT+TGG | - | chr6.3:40420080-40420099 | MS.gene060010:CDS | 45.0% |
| ! | TGCCCTTTTCTCGTCTTCTT+GGG | + | chr6.3:40420070-40420089 | None:intergenic | 45.0% |
| !! | AAGTGCTAACATCGGTTCCT+CGG | - | chr6.3:40418314-40418333 | MS.gene060010:intron | 45.0% |
| !!! | TTTAATATTTATTTGTTATT+TGG | - | chr6.3:40419679-40419698 | MS.gene060010:CDS | 5.0% |
| AAAGGACTGTGAACCGACCT+TGG | + | chr6.3:40419609-40419628 | None:intergenic | 50.0% | |
| AGCAGGGAACCTGTCACTAT+TGG | - | chr6.3:40420119-40420138 | MS.gene060010:CDS | 50.0% | |
| ATTGCAGCGTACGCTTCTTC+CGG | + | chr6.3:40418027-40418046 | None:intergenic | 50.0% | |
| CAGAAGTCGAAATGGACCAG+AGG | + | chr6.3:40419769-40419788 | None:intergenic | 50.0% | |
| CAGCTGATCCCAATAGTGAC+AGG | + | chr6.3:40420131-40420150 | None:intergenic | 50.0% | |
| CCGGTGAGACTTCTGAATCA+TGG | + | chr6.3:40419741-40419760 | None:intergenic | 50.0% | |
| CTCTGGTCCATTTCGACTTC+TGG | - | chr6.3:40419767-40419786 | MS.gene060010:CDS | 50.0% | |
| CTTGGGTCAGCACTATAGCA+GGG | - | chr6.3:40420103-40420122 | MS.gene060010:CDS | 50.0% | |
| GCAAGCAAAAAAGGGTGAGG+TGG | + | chr6.3:40418285-40418304 | None:intergenic | 50.0% | |
| GCAGGGAACCTGTCACTATT+GGG | - | chr6.3:40420120-40420139 | MS.gene060010:CDS | 50.0% | |
| TCAGCTGCAACTTCCGCAAT+AGG | + | chr6.3:40418513-40418532 | None:intergenic | 50.0% | |
| TGTGAAATAGGCCAGTCTGG+CGG | - | chr6.3:40419574-40419593 | MS.gene060010:CDS | 50.0% | |
| TTGGGAAATTGCAGCTGCTG+AGG | + | chr6.3:40420052-40420071 | None:intergenic | 50.0% | |
| ! | CGGTCTTCTTTTCGGCACAA+TGG | - | chr6.3:40418062-40418081 | MS.gene060010:CDS | 50.0% |
| !! | AGGACTGTTTAAGCGCTGAG+TGG | - | chr6.3:40418871-40418890 | MS.gene060010:CDS | 50.0% |
| !! | GGCATGGCTCATATTGGCTT+GGG | - | chr6.3:40420086-40420105 | MS.gene060010:CDS | 50.0% |
| !! | TCGCGAGTTGATCGTTCTAG+TGG | - | chr6.3:40419244-40419263 | MS.gene060010:CDS | 50.0% |
| GCTTGGGTCAGCACTATAGC+AGG | - | chr6.3:40420102-40420121 | MS.gene060010:CDS | 55.0% | |
| GTTACCAATTGGCGTAGCCG+AGG | + | chr6.3:40418334-40418353 | None:intergenic | 55.0% | |
| ! | CTGAGTGGAAGCGTAGACTG+TGG | - | chr6.3:40418886-40418905 | MS.gene060010:CDS | 55.0% |
| ! | GGGCATGGCTCATATTGGCT+TGG | - | chr6.3:40420085-40420104 | MS.gene060010:CDS | 55.0% |
| !! | AGTCTCACCGGTTTGACCTC+TGG | - | chr6.3:40419750-40419769 | MS.gene060010:CDS | 55.0% |
| AAATAGGCCAGTCTGGCGGC+TGG | - | chr6.3:40419578-40419597 | MS.gene060010:CDS | 60.0% | |
| GGTTCCTCGGCTACGCCAAT+TGG | - | chr6.3:40418327-40418346 | MS.gene060010:intron | 60.0% | |
| ! | GCGGCTGGTTGAACCAAGGT+CGG | - | chr6.3:40419593-40419612 | MS.gene060010:CDS | 60.0% |
| ! | TCTGGCGGCTGGTTGAACCA+AGG | - | chr6.3:40419589-40419608 | MS.gene060010:CDS | 60.0% |
| GGTTCAACCAGCCGCCAGAC+TGG | + | chr6.3:40419588-40419607 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 40417865 | 40420284 | 40417865 | ID=MS.gene060010 |
| chr6.3 | mRNA | 40417865 | 40420284 | 40417865 | ID=MS.gene060010.t1;Parent=MS.gene060010 |
| chr6.3 | exon | 40419103 | 40420284 | 40419103 | ID=MS.gene060010.t1.exon1;Parent=MS.gene060010.t1 |
| chr6.3 | CDS | 40419103 | 40420284 | 40419103 | ID=cds.MS.gene060010.t1;Parent=MS.gene060010.t1 |
| chr6.3 | exon | 40418821 | 40419010 | 40418821 | ID=MS.gene060010.t1.exon2;Parent=MS.gene060010.t1 |
| chr6.3 | CDS | 40418821 | 40419010 | 40418821 | ID=cds.MS.gene060010.t1;Parent=MS.gene060010.t1 |
| chr6.3 | exon | 40417865 | 40418127 | 40417865 | ID=MS.gene060010.t1.exon3;Parent=MS.gene060010.t1 |
| chr6.3 | CDS | 40417865 | 40418127 | 40417865 | ID=cds.MS.gene060010.t1;Parent=MS.gene060010.t1 |
| Gene Sequence |
| Protein sequence |
