Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058898.t1 | XP_013452135.1 | 97.2 | 544 | 9 | 1 | 1 | 544 | 1 | 538 | 2.20E-284 | 987.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058898.t1 | Q9AV23 | 52.8 | 544 | 192 | 4 | 1 | 543 | 1 | 480 | 5.6e-143 | 509.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058898.t1 | A0A072UAN3 | 97.2 | 544 | 9 | 1 | 1 | 544 | 1 | 538 | 1.6e-284 | 987.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058898 | MS.gene060010 | 0.878175 | 3.47E-69 | -1.69E-46 |
| MS.gene058898 | MS.gene072375 | -0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene058898 | MS.gene41953 | 0.89805 | 7.75E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058898.t1 | MTR_6g045483 | 97.243 | 544 | 9 | 1 | 1 | 544 | 1 | 538 | 0.0 | 1062 |
| MS.gene058898.t1 | MTR_8g038580 | 93.566 | 544 | 35 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1017 |
| MS.gene058898.t1 | MTR_6g045483 | 96.304 | 460 | 11 | 1 | 1 | 460 | 1 | 454 | 0.0 | 894 |
| MS.gene058898.t1 | MTR_6g045483 | 96.718 | 457 | 9 | 1 | 1 | 457 | 1 | 451 | 0.0 | 891 |
| MS.gene058898.t1 | MTR_6g045483 | 96.447 | 394 | 8 | 1 | 1 | 394 | 1 | 388 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058898.t1 | AT1G02260 | 67.336 | 548 | 129 | 6 | 1 | 544 | 1 | 502 | 0.0 | 728 |
| MS.gene058898.t1 | AT1G02260 | 67.336 | 548 | 129 | 6 | 1 | 544 | 1 | 502 | 0.0 | 728 |
Find 79 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATTCCAAGTGCTTTA+TGG | 0.120821 | 6.2:-39971454 | MS.gene058898:CDS |
| TATACTTGTCCTATCAAATT+TGG | 0.168169 | 6.2:-39971369 | MS.gene058898:CDS |
| TTCTGGAGTCATTTGAAATT+TGG | 0.188552 | 6.2:-39970422 | MS.gene058898:CDS |
| ACATAGGAAAATTACTTTCT+TGG | 0.213251 | 6.2:-39972533 | MS.gene058898:CDS |
| ATTGAACCTAAAACAACTTT+TGG | 0.239033 | 6.2:+39972774 | None:intergenic |
| GAACGATCAACTCGCGAATA+AGG | 0.283924 | 6.2:+39971419 | None:intergenic |
| TGTGTTTATATGATTACATT+AGG | 0.308469 | 6.2:-39971742 | MS.gene058898:CDS |
| TGGAATTCCAAGTGCTTTAT+GGG | 0.317249 | 6.2:-39971453 | MS.gene058898:CDS |
| TATCATACACATTGACATTC+TGG | 0.318666 | 6.2:-39970439 | MS.gene058898:CDS |
| CGCTATCACTTGAAATCATT+CGG | 0.331547 | 6.2:+39971986 | None:intergenic |
| ACTATTATAGTCACTGCTAT+TGG | 0.340356 | 6.2:-39970389 | MS.gene058898:CDS |
| TCAGCAGCAACTTCCGCAAT+AGG | 0.342324 | 6.2:+39972147 | None:intergenic |
| GGAATGTTTATCACAGTAGA+TGG | 0.344038 | 6.2:-39971488 | MS.gene058898:CDS |
| AGCAGGGAACCTGTCACTAT+TGG | 0.345978 | 6.2:-39970513 | MS.gene058898:CDS |
| AAGTGCTTTATGGGAGTTGA+TGG | 0.347243 | 6.2:-39971444 | MS.gene058898:CDS |
| GTAGATGGATTCAACAAAAC+TGG | 0.348050 | 6.2:-39971473 | MS.gene058898:CDS |
| GTTCTACCAATTGGTAGAAA+TGG | 0.355990 | 6.2:+39972708 | None:intergenic |
| CATTTGAAGCCAAATTTGAT+AGG | 0.362242 | 6.2:+39971360 | None:intergenic |
| AGAAGGGACTAATAATGATT+TGG | 0.366413 | 6.2:-39971902 | MS.gene058898:CDS |
| ATTGTTCCAGCTATGCTTGT+AGG | 0.381023 | 6.2:-39972243 | MS.gene058898:CDS |
| TGATTCTTATAGCTATGTAT+TGG | 0.385215 | 6.2:-39972203 | MS.gene058898:CDS |
| ATTGCAGCGTACGCTTCTTC+CGG | 0.394105 | 6.2:+39972633 | None:intergenic |
| TATGTCGTGGACTGCAATTT+CGG | 0.400089 | 6.2:-39971689 | MS.gene058898:CDS |
| CAAGTGATAGCGAAATTGAT+AGG | 0.401436 | 6.2:-39971975 | MS.gene058898:CDS |
| GATCCTGCTGTTCTACCAAT+TGG | 0.408518 | 6.2:+39972699 | None:intergenic |
| CCGAAAAGAAGACCGAGAAT+TGG | 0.409478 | 6.2:+39972603 | None:intergenic |
| GCAGTTCCATTTCTACCAAT+TGG | 0.420465 | 6.2:-39972714 | MS.gene058898:CDS |
| TTTCCCAAGAAGACGAGAAA+AGG | 0.423803 | 6.2:-39970568 | MS.gene058898:CDS |
| ATGTTGATTGCAATGCTTCT+TGG | 0.424623 | 6.2:-39971718 | MS.gene058898:CDS |
| GGTTCCTCAGCTACGCCAAT+TGG | 0.430487 | 6.2:-39972330 | MS.gene058898:CDS |
| AGAATGTCAATGTGTATGAT+AGG | 0.432270 | 6.2:+39970441 | None:intergenic |
| GCAGGGAACCTGTCACTATT+GGG | 0.435913 | 6.2:-39970512 | MS.gene058898:CDS |
| GCAATCGATCTTCCAATTCT+CGG | 0.438203 | 6.2:-39972615 | MS.gene058898:CDS |
| GAAAAGGGCATGGCTCATAT+TGG | 0.444360 | 6.2:-39970552 | MS.gene058898:CDS |
| CTTAATTCTCAAGAGTTGAA+TGG | 0.444464 | 6.2:-39972066 | MS.gene058898:CDS |
| TTTAGTACCTTCTCTAAACT+TGG | 0.448984 | 6.2:+39971625 | None:intergenic |
| TTACTTTCTTGGAAAAGTAA+AGG | 0.451454 | 6.2:-39972522 | MS.gene058898:CDS |
| AATTTCGGCTGCATTAGCTT+TGG | 0.452114 | 6.2:-39971674 | MS.gene058898:CDS |
| GTCGAGAGTAAAATTTCATT+CGG | 0.459818 | 6.2:-39972282 | MS.gene058898:CDS |
| TTGGCTTCAAATGTACCAAC+TGG | 0.461265 | 6.2:-39971350 | MS.gene058898:intron |
| GTCAATGTGTATGATAGGTT+TGG | 0.462325 | 6.2:+39970446 | None:intergenic |
| ACAACTCCTACAAGCATAGC+TGG | 0.466657 | 6.2:+39972237 | None:intergenic |
| GCTTGGGTCAGCACTATAGC+AGG | 0.474992 | 6.2:-39970530 | MS.gene058898:CDS |
| ATTGGTAGAAATGGAACTGC+TGG | 0.479127 | 6.2:+39972717 | None:intergenic |
| CTACCAATTGGTAGAACAGC+AGG | 0.479216 | 6.2:-39972702 | MS.gene058898:CDS |
| GAAGTAGATAGAACAATAGA+AGG | 0.481433 | 6.2:-39971835 | MS.gene058898:CDS |
| GGCATGGCTCATATTGGCTT+GGG | 0.482781 | 6.2:-39970546 | MS.gene058898:CDS |
| AATTCAACTGCATCAAAAGA+AGG | 0.484658 | 6.2:-39971919 | MS.gene058898:CDS |
| GGGCATGGCTCATATTGGCT+TGG | 0.487511 | 6.2:-39970547 | MS.gene058898:CDS |
| TTCCCAAGAAGACGAGAAAA+GGG | 0.509066 | 6.2:-39970567 | MS.gene058898:CDS |
| TTGGGAAATTGCAGCTGCTG+AGG | 0.511779 | 6.2:+39970583 | None:intergenic |
| TCGCGAGTTGATCGTTCTAG+TGG | 0.516278 | 6.2:-39971413 | MS.gene058898:CDS |
| GCAGTGACTATAATAGTTGA+AGG | 0.517685 | 6.2:+39970395 | None:intergenic |
| CAGCTGATCCCAATAGTGAC+AGG | 0.519036 | 6.2:+39970504 | None:intergenic |
| TTTCGTAGATTATGAACTTG+AGG | 0.530794 | 6.2:+39972009 | None:intergenic |
| TTGGAAAAGTAAAGGAGCAA+AGG | 0.533404 | 6.2:-39972514 | MS.gene058898:CDS |
| TGTTCTATCTACTTCGACAA+CGG | 0.538660 | 6.2:+39971843 | None:intergenic |
| GAATAATGAGACATTGTAGC+TGG | 0.539645 | 6.2:+39972096 | None:intergenic |
| ATCAACTCCCATAAAGCACT+TGG | 0.541024 | 6.2:+39971446 | None:intergenic |
| TGATTTGGCATCTCAAACAA+AGG | 0.541519 | 6.2:-39971887 | MS.gene058898:CDS |
| TTTGATCAGTTCGGAAGGAA+AGG | 0.549142 | 6.2:-39971806 | MS.gene058898:CDS |
| TTCTTGATTTCAAAGATGCT+AGG | 0.551545 | 6.2:-39971648 | MS.gene058898:CDS |
| TTCTTGGTTTAAATATGTCG+TGG | 0.568745 | 6.2:-39971702 | MS.gene058898:CDS |
| GCAGATATGTTCAAATACAT+AGG | 0.569867 | 6.2:-39972549 | MS.gene058898:CDS |
| ATTCAACTGCATCAAAAGAA+GGG | 0.589713 | 6.2:-39971918 | MS.gene058898:CDS |
| TGCTAGGCCAAGTTTAGAGA+AGG | 0.593210 | 6.2:-39971632 | MS.gene058898:intron |
| CTTGCTTCAAGTGCTAACAT+TGG | 0.596827 | 6.2:-39972351 | MS.gene058898:CDS |
| GAAATTGATAGGTTTCATGT+TGG | 0.608915 | 6.2:-39971964 | MS.gene058898:CDS |
| AATATTCAGAGTTATTACTC+CGG | 0.627366 | 6.2:-39972652 | MS.gene058898:CDS |
| ATCTGTTCATAAAGATATCG+AGG | 0.627397 | 6.2:-39972172 | MS.gene058898:CDS |
| GTTACCAATTGGCGTAGCTG+AGG | 0.632022 | 6.2:+39972326 | None:intergenic |
| CAGTGACTATAATAGTTGAA+GGG | 0.641516 | 6.2:+39970396 | None:intergenic |
| TAATATCCAGAAAATTGCAA+AGG | 0.641731 | 6.2:+39972749 | None:intergenic |
| AAGAAGACGAGAAAAGGGCA+TGG | 0.651383 | 6.2:-39970562 | MS.gene058898:CDS |
| AGATATCGAGGATCCTATTG+CGG | 0.653537 | 6.2:-39972160 | MS.gene058898:CDS |
| TTTGGCATCTCAAACAAAGG+AGG | 0.664262 | 6.2:-39971884 | MS.gene058898:CDS |
| CTGAGTGGAAGCGTAGACTG+TGG | 0.666710 | 6.2:-39971771 | MS.gene058898:CDS |
| AGGACTGTTTAAGCGCTGAG+TGG | 0.679075 | 6.2:-39971786 | MS.gene058898:CDS |
| CTTGGGTCAGCACTATAGCA+GGG | 0.686858 | 6.2:-39970529 | MS.gene058898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACTATTTATTTGTTATT+TGG | - | chr6.2:39972182-39972201 | MS.gene058898:CDS | 10.0% |
| !! | ATAAATAGTAATAAAAGAAC+CGG | + | chr6.2:39972174-39972193 | None:intergenic | 15.0% |
| !!! | TTTTAACTCTAAAATTTTCA+AGG | + | chr6.2:39972464-39972483 | None:intergenic | 15.0% |
| !! | ATCATTAATCTCCAATTTAA+AGG | - | chr6.2:39971988-39972007 | MS.gene058898:CDS | 20.0% |
| !! | TAAAAATGTAAACACAAGAT+TGG | + | chr6.2:39972529-39972548 | None:intergenic | 20.0% |
| !! | TGTGTTTATATGATTACATT+AGG | - | chr6.2:39971420-39971439 | MS.gene058898:CDS | 20.0% |
| !!! | ATTTTTATAGTACTATTGCT+TGG | - | chr6.2:39972542-39972561 | MS.gene058898:CDS | 20.0% |
| !!! | TCTAAAATTTTCAAGGAAAT+AGG | + | chr6.2:39972457-39972476 | None:intergenic | 20.0% |
| !!! | TGCAATTTTCAATATGAATT+CGG | + | chr6.2:39970752-39970771 | None:intergenic | 20.0% |
| ! | AATATTCAGAGTTATTACTC+CGG | - | chr6.2:39970510-39970529 | MS.gene058898:CDS | 25.0% |
| ! | ACATAGGAAAATTACTTTCT+TGG | - | chr6.2:39970629-39970648 | MS.gene058898:intron | 25.0% |
| ! | ACTAAAAAACTATGAACACT+TGG | - | chr6.2:39971554-39971573 | MS.gene058898:intron | 25.0% |
| ! | ATTAATCTCCAATTTAAAGG+AGG | - | chr6.2:39971991-39972010 | MS.gene058898:CDS | 25.0% |
| ! | ATTTGAATCCTCCTTTAAAT+TGG | + | chr6.2:39972002-39972021 | None:intergenic | 25.0% |
| ! | CTTCGGTTTATATATTGTAA+GGG | + | chr6.2:39971907-39971926 | None:intergenic | 25.0% |
| ! | TAATATCCAGAAAATTGCAA+AGG | + | chr6.2:39970416-39970435 | None:intergenic | 25.0% |
| ! | TATACTTGTCCTATCAAATT+TGG | - | chr6.2:39971793-39971812 | MS.gene058898:CDS | 25.0% |
| ! | TCAAGGAAATAGGAAATATT+AGG | + | chr6.2:39972447-39972466 | None:intergenic | 25.0% |
| ! | TCTTCGGTTTATATATTGTA+AGG | + | chr6.2:39971908-39971927 | None:intergenic | 25.0% |
| ! | TGATTCTTATAGCTATGTAT+TGG | - | chr6.2:39970959-39970978 | MS.gene058898:intron | 25.0% |
| ! | TTACTTTCTTGGAAAAGTAA+AGG | - | chr6.2:39970640-39970659 | MS.gene058898:intron | 25.0% |
| ! | TTGAAATAGAACATTTGAAG+TGG | + | chr6.2:39972376-39972395 | None:intergenic | 25.0% |
| !! | ATTGAACCTAAAACAACTTT+TGG | + | chr6.2:39970391-39970410 | None:intergenic | 25.0% |
| !! | TACTATGTGTTTTTCCATAT+CGG | - | chr6.2:39972313-39972332 | MS.gene058898:CDS | 25.0% |
| !!! | AATTTTTCTCTTGTTTCTAC+AGG | - | chr6.2:39971622-39971641 | MS.gene058898:intron | 25.0% |
| !!! | TCACTTTTGATATTCTTTTG+TGG | - | chr6.2:39971653-39971672 | MS.gene058898:CDS | 25.0% |
| AATTCAACTGCATCAAAAGA+AGG | - | chr6.2:39971243-39971262 | MS.gene058898:intron | 30.0% | |
| ACACAAAATCATATGACTTG+TGG | + | chr6.2:39971935-39971954 | None:intergenic | 30.0% | |
| ACTATTATAGTCACTGCTAT+TGG | - | chr6.2:39972773-39972792 | MS.gene058898:CDS | 30.0% | |
| AGAAGGGACTAATAATGATT+TGG | - | chr6.2:39971260-39971279 | MS.gene058898:intron | 30.0% | |
| AGAATGTCAATGTGTATGAT+AGG | + | chr6.2:39972724-39972743 | None:intergenic | 30.0% | |
| AGGTTTAACAATTACCGATA+TGG | + | chr6.2:39972330-39972349 | None:intergenic | 30.0% | |
| ATCTGTTCATAAAGATATCG+AGG | - | chr6.2:39970990-39971009 | MS.gene058898:intron | 30.0% | |
| ATTCAACTGCATCAAAAGAA+GGG | - | chr6.2:39971244-39971263 | MS.gene058898:intron | 30.0% | |
| CAGTGACTATAATAGTTGAA+GGG | + | chr6.2:39972769-39972788 | None:intergenic | 30.0% | |
| CTTAATTCTCAAGAGTTGAA+TGG | - | chr6.2:39971096-39971115 | MS.gene058898:intron | 30.0% | |
| GAAATTGATAGGTTTCATGT+TGG | - | chr6.2:39971198-39971217 | MS.gene058898:intron | 30.0% | |
| GAACCAATCACTATTAACTA+CGG | + | chr6.2:39972149-39972168 | None:intergenic | 30.0% | |
| GAAGTAGATAGAACAATAGA+AGG | - | chr6.2:39971327-39971346 | MS.gene058898:intron | 30.0% | |
| GCAGATATGTTCAAATACAT+AGG | - | chr6.2:39970613-39970632 | MS.gene058898:CDS | 30.0% | |
| GGTTTATATATTGTAAGGGT+AGG | + | chr6.2:39971903-39971922 | None:intergenic | 30.0% | |
| GTCGAGAGTAAAATTTCATT+CGG | - | chr6.2:39970880-39970899 | MS.gene058898:intron | 30.0% | |
| TATCATACACATTGACATTC+TGG | - | chr6.2:39972723-39972742 | MS.gene058898:CDS | 30.0% | |
| TTCTTGATTTCAAAGATGCT+AGG | - | chr6.2:39971514-39971533 | MS.gene058898:CDS | 30.0% | |
| TTCTTGGTTTAAATATGTCG+TGG | - | chr6.2:39971460-39971479 | MS.gene058898:CDS | 30.0% | |
| TTTAGTACCTTCTCTAAACT+TGG | + | chr6.2:39971540-39971559 | None:intergenic | 30.0% | |
| TTTCGTAGATTATGAACTTG+AGG | + | chr6.2:39971156-39971175 | None:intergenic | 30.0% | |
| ! | CATTTGAAGCCAAATTTGAT+AGG | + | chr6.2:39971805-39971824 | None:intergenic | 30.0% |
| ! | TTAATAGTGATTGGTTCATC+CGG | - | chr6.2:39972152-39972171 | MS.gene058898:CDS | 30.0% |
| ! | TTATTTGGTTCAACCAACTA+TGG | - | chr6.2:39972197-39972216 | MS.gene058898:CDS | 30.0% |
| !! | CCAATTCCAAAAGTTGTTTT+AGG | - | chr6.2:39970382-39970401 | MS.gene058898:CDS | 30.0% |
| !! | TTCTGGAGTCATTTGAAATT+TGG | - | chr6.2:39972740-39972759 | MS.gene058898:CDS | 30.0% |
| !!! | CCTAAAACAACTTTTGGAAT+TGG | + | chr6.2:39970385-39970404 | None:intergenic | 30.0% |
| AAAATCATTCACTCACCAGT+TGG | + | chr6.2:39971830-39971849 | None:intergenic | 35.0% | |
| AAACAATTGAGTAACCACAG+AGG | + | chr6.2:39971858-39971877 | None:intergenic | 35.0% | |
| AAGCAAGTGCAAGCAAAAAA+GGG | + | chr6.2:39970798-39970817 | None:intergenic | 35.0% | |
| CGCTATCACTTGAAATCATT+CGG | + | chr6.2:39971179-39971198 | None:intergenic | 35.0% | |
| CTATTAACTACGGTTCTGTT+TGG | + | chr6.2:39972139-39972158 | None:intergenic | 35.0% | |
| GAACCAATTGAACCATGATT+CGG | - | chr6.2:39972222-39972241 | MS.gene058898:CDS | 35.0% | |
| GAACCGTAGTTAATAGTGAT+TGG | - | chr6.2:39972143-39972162 | MS.gene058898:CDS | 35.0% | |
| GAATAATGAGACATTGTAGC+TGG | + | chr6.2:39971069-39971088 | None:intergenic | 35.0% | |
| GATACATCAGATCGAAAAGA+TGG | + | chr6.2:39972501-39972520 | None:intergenic | 35.0% | |
| GCAGTGACTATAATAGTTGA+AGG | + | chr6.2:39972770-39972789 | None:intergenic | 35.0% | |
| GGAATGTTTATCACAGTAGA+TGG | - | chr6.2:39971674-39971693 | MS.gene058898:CDS | 35.0% | |
| GTCAATGTGTATGATAGGTT+TGG | + | chr6.2:39972719-39972738 | None:intergenic | 35.0% | |
| GTTCTACCAATTGGTAGAAA+TGG | + | chr6.2:39970457-39970476 | None:intergenic | 35.0% | |
| TGGAATTCCAAGTGCTTTAT+GGG | - | chr6.2:39971709-39971728 | MS.gene058898:CDS | 35.0% | |
| TGTTCTATCTACTTCGACAA+CGG | + | chr6.2:39971322-39971341 | None:intergenic | 35.0% | |
| TTCGCAACACTAACATAACA+TGG | + | chr6.2:39972033-39972052 | None:intergenic | 35.0% | |
| TTGGAAAAGTAAAGGAGCAA+AGG | - | chr6.2:39970648-39970667 | MS.gene058898:intron | 35.0% | |
| ! | ACAGCGATAACAAGATTTTG+AGG | + | chr6.2:39970862-39970881 | None:intergenic | 35.0% |
| ! | ATGTTGATTGCAATGCTTCT+TGG | - | chr6.2:39971444-39971463 | MS.gene058898:CDS | 35.0% |
| ! | CAAGTGATAGCGAAATTGAT+AGG | - | chr6.2:39971187-39971206 | MS.gene058898:intron | 35.0% |
| ! | CAATAGCCTTTGCAATTTTC+TGG | - | chr6.2:39970407-39970426 | MS.gene058898:CDS | 35.0% |
| ! | CAGCGATAACAAGATTTTGA+GGG | + | chr6.2:39970861-39970880 | None:intergenic | 35.0% |
| ! | CTGGTGAGTGAATGATTTTA+AGG | - | chr6.2:39971831-39971850 | MS.gene058898:CDS | 35.0% |
| ! | GTAGATGGATTCAACAAAAC+TGG | - | chr6.2:39971689-39971708 | MS.gene058898:CDS | 35.0% |
| ! | TCAATTGGTTCAACCATAGT+TGG | + | chr6.2:39972213-39972232 | None:intergenic | 35.0% |
| ! | TCATTCGGAGAGTTTTTGTT+TGG | - | chr6.2:39970895-39970914 | MS.gene058898:intron | 35.0% |
| ! | TGATTTGGCATCTCAAACAA+AGG | - | chr6.2:39971275-39971294 | MS.gene058898:intron | 35.0% |
| !! | AGATTTTGAGGGTTACCAAT+TGG | + | chr6.2:39970850-39970869 | None:intergenic | 35.0% |
| !! | TCTTTTAGGTGCAATGCTTA+TGG | - | chr6.2:39970486-39970505 | MS.gene058898:CDS | 35.0% |
| !! | TTGAATGCATCAACTTGTTG+TGG | - | chr6.2:39971957-39971976 | MS.gene058898:CDS | 35.0% |
| !!! | AATGATTTTAAGGTCCTCTG+TGG | - | chr6.2:39971841-39971860 | MS.gene058898:CDS | 35.0% |
| !!! | ACGGTTCTGTTTGGTTTTAA+TGG | + | chr6.2:39972130-39972149 | None:intergenic | 35.0% |
| !!! | AGGACATGTTTTGATCAGTT+CGG | - | chr6.2:39971347-39971366 | MS.gene058898:intron | 35.0% |
| AAGTGCTTTATGGGAGTTGA+TGG | - | chr6.2:39971718-39971737 | MS.gene058898:CDS | 40.0% | |
| ACAGAAATGATCAGCAGTGA+AGG | + | chr6.2:39972350-39972369 | None:intergenic | 40.0% | |
| AGATATCGAGGATCCTATTG+CGG | - | chr6.2:39971002-39971021 | MS.gene058898:intron | 40.0% | |
| ATTGGTAGAAATGGAACTGC+TGG | + | chr6.2:39970448-39970467 | None:intergenic | 40.0% | |
| ATTGTTCCAGCTATGCTTGT+AGG | - | chr6.2:39970919-39970938 | MS.gene058898:intron | 40.0% | |
| CTGGAATTCCAAGTGCTTTA+TGG | - | chr6.2:39971708-39971727 | MS.gene058898:CDS | 40.0% | |
| CTTCCGAATCATGGTTCAAT+TGG | + | chr6.2:39972228-39972247 | None:intergenic | 40.0% | |
| CTTGCTTCAAGTGCTAACAT+TGG | - | chr6.2:39970811-39970830 | MS.gene058898:intron | 40.0% | |
| GAAGCAAGTGCAAGCAAAAA+AGG | + | chr6.2:39970799-39970818 | None:intergenic | 40.0% | |
| GCAATCGATCTTCCAATTCT+CGG | - | chr6.2:39970547-39970566 | MS.gene058898:CDS | 40.0% | |
| GCAGTTCCATTTCTACCAAT+TGG | - | chr6.2:39970448-39970467 | MS.gene058898:CDS | 40.0% | |
| TAGTGTTGCGAAATAGAGTC+TGG | - | chr6.2:39972041-39972060 | MS.gene058898:CDS | 40.0% | |
| TGTTGATCCAGAAGTCGAAA+TGG | + | chr6.2:39972273-39972292 | None:intergenic | 40.0% | |
| TTCCCAAGAAGACGAGAAAA+GGG | - | chr6.2:39972595-39972614 | MS.gene058898:CDS | 40.0% | |
| TTCGACTTCTGGATCAACAT+TGG | - | chr6.2:39972274-39972293 | MS.gene058898:CDS | 40.0% | |
| TTGGCTTCAAATGTACCAAC+TGG | - | chr6.2:39971812-39971831 | MS.gene058898:CDS | 40.0% | |
| TTTCCCAAGAAGACGAGAAA+AGG | - | chr6.2:39972594-39972613 | MS.gene058898:CDS | 40.0% | |
| TTTGATCAGTTCGGAAGGAA+AGG | - | chr6.2:39971356-39971375 | MS.gene058898:CDS | 40.0% | |
| TTTGGCATCTCAAACAAAGG+AGG | - | chr6.2:39971278-39971297 | MS.gene058898:intron | 40.0% | |
| ! | AATTTCGGCTGCATTAGCTT+TGG | - | chr6.2:39971488-39971507 | MS.gene058898:CDS | 40.0% |
| ! | ACTTCGACAACGGTTTTTGA+CGG | + | chr6.2:39971312-39971331 | None:intergenic | 40.0% |
| ! | AGAACAGCAGGATCTCTTTT+AGG | - | chr6.2:39970472-39970491 | MS.gene058898:CDS | 40.0% |
| ! | ATCAACTCCCATAAAGCACT+TGG | + | chr6.2:39971719-39971738 | None:intergenic | 40.0% |
| ! | CCAATTCTCGGTCTTCTTTT+CGG | - | chr6.2:39970559-39970578 | MS.gene058898:CDS | 40.0% |
| ! | CTTCTGGATCAACATTGGTT+TGG | - | chr6.2:39972279-39972298 | MS.gene058898:CDS | 40.0% |
| ! | TATGACTTGTGGATCGTCTT+CGG | + | chr6.2:39971924-39971943 | None:intergenic | 40.0% |
| ! | TATGTCGTGGACTGCAATTT+CGG | - | chr6.2:39971473-39971492 | MS.gene058898:CDS | 40.0% |
| !! | ATGCATCAACTTGTTGTGGT+AGG | - | chr6.2:39971961-39971980 | MS.gene058898:CDS | 40.0% |
| !!! | CATGTTTTGATCAGTTCGGA+AGG | - | chr6.2:39971351-39971370 | MS.gene058898:CDS | 40.0% |
| AAGAAGACGAGAAAAGGGCA+TGG | - | chr6.2:39972600-39972619 | MS.gene058898:CDS | 45.0% | |
| ACAACTCCTACAAGCATAGC+TGG | + | chr6.2:39970928-39970947 | None:intergenic | 45.0% | |
| AGTCTCATCAGTTTGACCTC+TGG | - | chr6.2:39972246-39972265 | MS.gene058898:CDS | 45.0% | |
| AGTGCAAGCAAAAAAGGGTG+AGG | + | chr6.2:39970793-39970812 | None:intergenic | 45.0% | |
| CCGAAAAGAAGACCGAGAAT+TGG | + | chr6.2:39970562-39970581 | None:intergenic | 45.0% | |
| CTACCAATTGGTAGAACAGC+AGG | - | chr6.2:39970460-39970479 | MS.gene058898:CDS | 45.0% | |
| CTGATGAGACTTCCGAATCA+TGG | + | chr6.2:39972237-39972256 | None:intergenic | 45.0% | |
| GAACGATCAACTCGCGAATA+AGG | + | chr6.2:39971746-39971765 | None:intergenic | 45.0% | |
| GATCCTGCTGTTCTACCAAT+TGG | + | chr6.2:39970466-39970485 | None:intergenic | 45.0% | |
| GTTGAACCAAGGTCAGTTCA+CGG | - | chr6.2:39972103-39972122 | MS.gene058898:CDS | 45.0% | |
| TGCTAGGCCAAGTTTAGAGA+AGG | - | chr6.2:39971530-39971549 | MS.gene058898:intron | 45.0% | |
| TTGTAAGGGTAGGAGAGACA+AGG | + | chr6.2:39971893-39971912 | None:intergenic | 45.0% | |
| ! | ATGCCCTTTTCTCGTCTTCT+TGG | + | chr6.2:39972601-39972620 | None:intergenic | 45.0% |
| ! | GAAAAGGGCATGGCTCATAT+TGG | - | chr6.2:39972610-39972629 | MS.gene058898:CDS | 45.0% |
| ! | TGCCCTTTTCTCGTCTTCTT+GGG | + | chr6.2:39972600-39972619 | None:intergenic | 45.0% |
| ! | TGTCTGGTTCAACCGGAAAT+AGG | - | chr6.2:39972065-39972084 | MS.gene058898:CDS | 45.0% |
| AATGGACCGTGAACTGACCT+TGG | + | chr6.2:39972112-39972131 | None:intergenic | 50.0% | |
| AGCAGGGAACCTGTCACTAT+TGG | - | chr6.2:39972649-39972668 | MS.gene058898:CDS | 50.0% | |
| ATTGCAGCGTACGCTTCTTC+CGG | + | chr6.2:39970532-39970551 | None:intergenic | 50.0% | |
| CAGAAGTCGAAATGGTCCAG+AGG | + | chr6.2:39972265-39972284 | None:intergenic | 50.0% | |
| CAGCTGATCCCAATAGTGAC+AGG | + | chr6.2:39972661-39972680 | None:intergenic | 50.0% | |
| CGAAATAGAGTCTGGCTGTC+TGG | - | chr6.2:39972049-39972068 | MS.gene058898:CDS | 50.0% | |
| CTCTGGACCATTTCGACTTC+TGG | - | chr6.2:39972263-39972282 | MS.gene058898:CDS | 50.0% | |
| CTTGGGTCAGCACTATAGCA+GGG | - | chr6.2:39972633-39972652 | MS.gene058898:CDS | 50.0% | |
| GCAAGCAAAAAAGGGTGAGG+CGG | + | chr6.2:39970790-39970809 | None:intergenic | 50.0% | |
| GCAGGGAACCTGTCACTATT+GGG | - | chr6.2:39972650-39972669 | MS.gene058898:CDS | 50.0% | |
| GTTACCAATTGGCGTAGCTG+AGG | + | chr6.2:39970839-39970858 | None:intergenic | 50.0% | |
| TCAGCAGCAACTTCCGCAAT+AGG | + | chr6.2:39971018-39971037 | None:intergenic | 50.0% | |
| TTGGGAAATTGCAGCTGCTG+AGG | + | chr6.2:39972582-39972601 | None:intergenic | 50.0% | |
| ! | CGGTCTTCTTTTCGGCACAA+TGG | - | chr6.2:39970567-39970586 | MS.gene058898:CDS | 50.0% |
| !! | AGGACTGTTTAAGCGCTGAG+TGG | - | chr6.2:39971376-39971395 | MS.gene058898:CDS | 50.0% |
| !! | GGCATGGCTCATATTGGCTT+GGG | - | chr6.2:39972616-39972635 | MS.gene058898:CDS | 50.0% |
| !! | TCGCGAGTTGATCGTTCTAG+TGG | - | chr6.2:39971749-39971768 | MS.gene058898:CDS | 50.0% |
| AAATAGGCCAGTCTGGCGGT+TGG | - | chr6.2:39972081-39972100 | MS.gene058898:CDS | 55.0% | |
| CAACCGGAAATAGGCCAGTC+TGG | - | chr6.2:39972074-39972093 | MS.gene058898:CDS | 55.0% | |
| GCTTGGGTCAGCACTATAGC+AGG | - | chr6.2:39972632-39972651 | MS.gene058898:CDS | 55.0% | |
| GGTTCCTCAGCTACGCCAAT+TGG | - | chr6.2:39970832-39970851 | MS.gene058898:intron | 55.0% | |
| ! | CTGAGTGGAAGCGTAGACTG+TGG | - | chr6.2:39971391-39971410 | MS.gene058898:CDS | 55.0% |
| ! | GGGCATGGCTCATATTGGCT+TGG | - | chr6.2:39972615-39972634 | MS.gene058898:CDS | 55.0% |
| ! | GTCTGGCTGTCTGGTTCAAC+CGG | - | chr6.2:39972058-39972077 | MS.gene058898:CDS | 55.0% |
| ! | TCTGGCGGTTGGTTGAACCA+AGG | - | chr6.2:39972092-39972111 | MS.gene058898:CDS | 55.0% |
| CCGGAAATAGGCCAGTCTGG+CGG | - | chr6.2:39972077-39972096 | MS.gene058898:CDS | 60.0% | |
| GGTTCAACCAACCGCCAGAC+TGG | + | chr6.2:39972091-39972110 | None:intergenic | 60.0% | |
| !! | CCGCCAGACTGGCCTATTTC+CGG | + | chr6.2:39972080-39972099 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 39970370 | 39972814 | 39970370 | ID=MS.gene058898 |
| chr6.2 | mRNA | 39970370 | 39972814 | 39970370 | ID=MS.gene058898.t1;Parent=MS.gene058898 |
| chr6.2 | exon | 39971633 | 39972814 | 39971633 | ID=MS.gene058898.t1.exon1;Parent=MS.gene058898.t1 |
| chr6.2 | CDS | 39971633 | 39972814 | 39971633 | ID=cds.MS.gene058898.t1;Parent=MS.gene058898.t1 |
| chr6.2 | exon | 39971351 | 39971540 | 39971351 | ID=MS.gene058898.t1.exon2;Parent=MS.gene058898.t1 |
| chr6.2 | CDS | 39971351 | 39971540 | 39971351 | ID=cds.MS.gene058898.t1;Parent=MS.gene058898.t1 |
| chr6.2 | exon | 39970370 | 39970632 | 39970370 | ID=MS.gene058898.t1.exon3;Parent=MS.gene058898.t1 |
| chr6.2 | CDS | 39970370 | 39970632 | 39970370 | ID=cds.MS.gene058898.t1;Parent=MS.gene058898.t1 |
| Gene Sequence |
| Protein sequence |
