Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42294.t1 | XP_013462189.1 | 96.8 | 217 | 7 | 0 | 1 | 217 | 78 | 294 | 4.80E-121 | 443.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42294.t1 | Q9FXH7 | 49.1 | 234 | 88 | 9 | 3 | 211 | 113 | 340 | 1.4e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42294.t1 | A0A072V2G0 | 96.8 | 217 | 7 | 0 | 1 | 217 | 78 | 294 | 3.5e-121 | 443.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42294.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene42294 | 0.849453 | 3.20E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene42294 | 0.828912 | 6.90E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42294.t1 | MTR_3g112510 | 96.774 | 217 | 7 | 0 | 1 | 217 | 78 | 294 | 1.19e-157 | 438 |
| MS.gene42294.t1 | MTR_8g076620 | 55.000 | 220 | 74 | 9 | 6 | 211 | 118 | 326 | 3.17e-61 | 194 |
| MS.gene42294.t1 | MTR_5g021130 | 49.784 | 231 | 93 | 11 | 4 | 214 | 95 | 322 | 1.34e-53 | 174 |
| MS.gene42294.t1 | MTR_4g071110 | 41.622 | 185 | 77 | 6 | 6 | 188 | 14 | 169 | 1.48e-38 | 134 |
| MS.gene42294.t1 | MTR_1g023230 | 67.568 | 111 | 27 | 4 | 7 | 109 | 120 | 229 | 3.11e-36 | 128 |
| MS.gene42294.t1 | MTR_5g089750 | 46.541 | 159 | 67 | 5 | 9 | 152 | 249 | 404 | 1.71e-31 | 119 |
| MS.gene42294.t1 | MTR_3g014660 | 41.615 | 161 | 66 | 7 | 9 | 149 | 134 | 286 | 5.11e-28 | 108 |
| MS.gene42294.t1 | MTR_8g039110 | 38.043 | 184 | 86 | 6 | 9 | 167 | 124 | 304 | 1.05e-27 | 107 |
| MS.gene42294.t1 | MTR_0363s0040 | 75.556 | 45 | 11 | 0 | 9 | 53 | 124 | 168 | 8.48e-20 | 84.7 |
| MS.gene42294.t1 | MTR_0105s0070 | 66.667 | 33 | 11 | 0 | 11 | 43 | 44 | 76 | 1.46e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42294.t1 | AT1G19790 | 50.000 | 236 | 87 | 10 | 1 | 211 | 111 | 340 | 1.17e-63 | 201 |
| MS.gene42294.t1 | AT1G19790 | 50.000 | 236 | 87 | 10 | 1 | 211 | 111 | 340 | 1.17e-63 | 201 |
| MS.gene42294.t1 | AT1G75520 | 48.954 | 239 | 84 | 9 | 1 | 213 | 117 | 343 | 9.50e-60 | 191 |
| MS.gene42294.t1 | AT5G66350 | 52.036 | 221 | 74 | 9 | 9 | 211 | 120 | 326 | 8.87e-57 | 183 |
| MS.gene42294.t1 | AT3G51060 | 51.316 | 228 | 84 | 11 | 7 | 211 | 142 | 365 | 2.01e-55 | 181 |
| MS.gene42294.t1 | AT5G66350 | 51.389 | 216 | 74 | 8 | 9 | 206 | 120 | 322 | 2.85e-55 | 179 |
| MS.gene42294.t1 | AT5G66350 | 51.869 | 214 | 72 | 8 | 9 | 204 | 120 | 320 | 3.35e-55 | 179 |
| MS.gene42294.t1 | AT2G18120 | 52.632 | 152 | 60 | 4 | 3 | 152 | 66 | 207 | 1.88e-43 | 145 |
| MS.gene42294.t1 | AT4G36260 | 53.125 | 160 | 61 | 5 | 3 | 150 | 88 | 245 | 5.30e-43 | 147 |
| MS.gene42294.t1 | AT2G18120 | 50.667 | 150 | 64 | 3 | 3 | 152 | 66 | 205 | 9.21e-41 | 139 |
| MS.gene42294.t1 | AT2G21400 | 40.191 | 209 | 90 | 8 | 6 | 210 | 7 | 184 | 2.07e-39 | 134 |
| MS.gene42294.t1 | AT2G21400 | 40.191 | 209 | 90 | 8 | 6 | 210 | 6 | 183 | 2.39e-39 | 134 |
| MS.gene42294.t1 | AT2G21400 | 40.488 | 205 | 80 | 8 | 6 | 210 | 7 | 169 | 1.90e-37 | 129 |
| MS.gene42294.t1 | AT2G21400 | 40.488 | 205 | 80 | 8 | 6 | 210 | 6 | 168 | 2.01e-37 | 129 |
| MS.gene42294.t1 | AT5G12330 | 44.720 | 161 | 66 | 5 | 9 | 149 | 112 | 269 | 6.34e-31 | 115 |
| MS.gene42294.t1 | AT5G12330 | 44.720 | 161 | 66 | 5 | 9 | 149 | 112 | 269 | 6.34e-31 | 115 |
| MS.gene42294.t1 | AT5G12330 | 44.720 | 161 | 66 | 5 | 9 | 149 | 199 | 356 | 8.52e-31 | 117 |
| MS.gene42294.t1 | AT5G33210 | 57.955 | 88 | 34 | 3 | 7 | 91 | 15 | 102 | 3.86e-26 | 97.8 |
| MS.gene42294.t1 | AT5G33210 | 57.955 | 88 | 34 | 3 | 7 | 91 | 50 | 137 | 1.93e-25 | 97.8 |
| MS.gene42294.t1 | AT3G54430 | 36.486 | 148 | 77 | 4 | 5 | 149 | 37 | 170 | 5.87e-23 | 91.7 |
| MS.gene42294.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 9 | 54 | 112 | 157 | 1.78e-21 | 89.0 |
Find 66 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACCGTATTAATTAATT+AGG | 0.252373 | 3.2:+89805824 | None:intergenic |
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3.2:-89805998 | MS.gene42294:CDS |
| TATTAATTAATTAGGATGTT+GGG | 0.323138 | 3.2:+89805832 | None:intergenic |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3.2:+89806019 | None:intergenic |
| AGCTCCGCTCAATGCTTTCA+TGG | 0.372783 | 3.2:-89805879 | MS.gene42294:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3.2:+89806006 | None:intergenic |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3.2:-89806845 | MS.gene42294:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3.2:+89806876 | None:intergenic |
| GTGGTAGGGATGGGTGGTTG+AGG | 0.413319 | 3.2:+89806767 | None:intergenic |
| CGTTCACGGCGTTTAGCAGC+TGG | 0.414213 | 3.2:+89806890 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3.2:-89806166 | MS.gene42294:CDS |
| TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3.2:-89806196 | MS.gene42294:intron |
| GTATTAATTAATTAGGATGT+TGG | 0.434180 | 3.2:+89805831 | None:intergenic |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3.2:-89806007 | MS.gene42294:CDS |
| TGGTAGGGATGGGTGGTTGA+GGG | 0.435264 | 3.2:+89806768 | None:intergenic |
| GGGATGGGTGGTTGAGGGCA+AGG | 0.438435 | 3.2:+89806773 | None:intergenic |
| CTGCTACTTAGGGTTGGAGT+TGG | 0.452789 | 3.2:-89806197 | MS.gene42294:intron |
| ATTGAGCGGAGCTGAGTAAA+GGG | 0.455523 | 3.2:+89805889 | None:intergenic |
| GTTCTCCAGGAGTAACCTTT+CGG | 0.458523 | 3.2:-89806153 | MS.gene42294:CDS |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3.2:-89806046 | MS.gene42294:CDS |
| TGTTCAATGCGCGTATCAAA+CGG | 0.468547 | 3.2:-89806095 | MS.gene42294:CDS |
| TGGTTGAGGGCAAGGAAGAG+AGG | 0.470671 | 3.2:+89806781 | None:intergenic |
| CTCAATGCTTTCATGGCAGC+TGG | 0.470851 | 3.2:-89805872 | MS.gene42294:CDS |
| TACGCGCATTGAACATGATC+TGG | 0.473149 | 3.2:+89806103 | None:intergenic |
| ATACACATGTTAAGAGTACT+TGG | 0.475078 | 3.2:-89806916 | MS.gene42294:CDS |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3.2:+89805995 | None:intergenic |
| ATTAATTAATTAGGATGTTG+GGG | 0.494474 | 3.2:+89805833 | None:intergenic |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3.2:+89806845 | None:intergenic |
| AATAATTATATACCTGTGGT+AGG | 0.506589 | 3.2:+89806752 | None:intergenic |
| ACACACCGAAAGGTTACTCC+TGG | 0.521457 | 3.2:+89806148 | None:intergenic |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3.2:-89805995 | MS.gene42294:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3.2:-89806082 | MS.gene42294:CDS |
| CATTGAGCGGAGCTGAGTAA+AGG | 0.525999 | 3.2:+89805888 | None:intergenic |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3.2:-89807017 | MS.gene42294:CDS |
| TTATATACCTGTGGTAGGGA+TGG | 0.531535 | 3.2:+89806757 | None:intergenic |
| GAACTTGTTGTAAGAGTCGA+GGG | 0.537704 | 3.2:-89806949 | MS.gene42294:CDS |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3.2:-89805992 | MS.gene42294:CDS |
| ATACCTGTGGTAGGGATGGG+TGG | 0.544823 | 3.2:+89806761 | None:intergenic |
| ACTCCTGGAGAACTCACCTC+TGG | 0.545749 | 3.2:+89806163 | None:intergenic |
| CGACACACAGAAATTAATCA+AGG | 0.547183 | 3.2:-89806809 | MS.gene42294:CDS |
| CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3.2:+89806166 | None:intergenic |
| AGTAAAGGGAAGGGTCGAAT+GGG | 0.547906 | 3.2:+89805903 | None:intergenic |
| GAGTAAAGGGAAGGGTCGAA+TGG | 0.551923 | 3.2:+89805902 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3.2:-89806131 | MS.gene42294:CDS |
| TATATACCTGTGGTAGGGAT+GGG | 0.567730 | 3.2:+89806758 | None:intergenic |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3.2:-89806079 | MS.gene42294:CDS |
| ATAATTATATACCTGTGGTA+GGG | 0.570372 | 3.2:+89806753 | None:intergenic |
| AGCGGAGCTGAGTAAAGGGA+AGG | 0.586546 | 3.2:+89805893 | None:intergenic |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3.2:-89807034 | None:intergenic |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3.2:+89806022 | None:intergenic |
| CAACCACCCATCCCTACCAC+AGG | 0.593236 | 3.2:-89806764 | MS.gene42294:intron |
| AGAACTTGTTGTAAGAGTCG+AGG | 0.607559 | 3.2:-89806950 | MS.gene42294:CDS |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3.2:+89805959 | None:intergenic |
| AGGGTCGAATGGGATACCGC+TGG | 0.611002 | 3.2:+89805913 | None:intergenic |
| CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3.2:+89806167 | None:intergenic |
| ACTCACTCTCACACACCGAA+AGG | 0.630422 | 3.2:+89806138 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3.2:-89807031 | None:intergenic |
| TTAATTAATTAGGATGTTGG+GGG | 0.645627 | 3.2:+89805834 | None:intergenic |
| TACACATGTTAAGAGTACTT+GGG | 0.648062 | 3.2:-89806915 | MS.gene42294:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3.2:-89806078 | MS.gene42294:CDS |
| GCGGAGCTGAGTAAAGGGAA+GGG | 0.669522 | 3.2:+89805894 | None:intergenic |
| GCAACTACAGCTACAACCAG+CGG | 0.670400 | 3.2:-89805929 | MS.gene42294:CDS |
| GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3.2:-89806179 | MS.gene42294:CDS |
| GCTGCCATGAAAGCATTGAG+CGG | 0.695869 | 3.2:+89805875 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3.2:-89806127 | MS.gene42294:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3.2:-89807010 | MS.gene42294:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATAGTTATAATGA+TGG | - | chr3.2:89806573-89806592 | MS.gene42294:intron | 15.0% |
| !! | ACATACATACATACATATAT+AGG | - | chr3.2:89806171-89806190 | MS.gene42294:CDS | 20.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3.2:89806118-89806137 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3.2:89806273-89806292 | MS.gene42294:intron | 20.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3.2:89806392-89806411 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3.2:89806114-89806133 | None:intergenic | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3.2:89806113-89806132 | None:intergenic | 25.0% |
| ! | GAAATAGTAACAAGTTATGA+TGG | + | chr3.2:89806453-89806472 | None:intergenic | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3.2:89806588-89806607 | MS.gene42294:intron | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3.2:89806398-89806417 | MS.gene42294:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3.2:89806506-89806525 | None:intergenic | 25.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3.2:89806817-89806836 | MS.gene42294:CDS | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3.2:89806300-89806319 | None:intergenic | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3.2:89806160-89806179 | None:intergenic | 30.0% | |
| TGACGAACTCATCAAATTAT+TGG | - | chr3.2:89806526-89806545 | MS.gene42294:intron | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3.2:89806499-89806518 | None:intergenic | 30.0% |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3.2:89806655-89806674 | MS.gene42294:intron | 30.0% |
| !! | ATACACATGTTAAGAGTACT+TGG | - | chr3.2:89805947-89805966 | MS.gene42294:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3.2:89806656-89806675 | MS.gene42294:intron | 30.0% |
| !! | TACACATGTTAAGAGTACTT+GGG | - | chr3.2:89805948-89805967 | MS.gene42294:CDS | 30.0% |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3.2:89806336-89806355 | None:intergenic | 30.0% |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3.2:89806481-89806500 | None:intergenic | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3.2:89806844-89806863 | None:intergenic | 35.0% | |
| CGACACACAGAAATTAATCA+AGG | - | chr3.2:89806054-89806073 | MS.gene42294:CDS | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3.2:89806847-89806866 | None:intergenic | 35.0% | |
| GTATGTATGTATAGCTAGCT+AGG | + | chr3.2:89806161-89806180 | None:intergenic | 35.0% | |
| GTTAAGGTCTAGTCATATAG+AGG | + | chr3.2:89806376-89806395 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3.2:89806907-89806926 | None:intergenic | 35.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3.2:89806856-89806875 | MS.gene42294:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3.2:89806860-89806879 | None:intergenic | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3.2:89805990-89806009 | None:intergenic | 40.0% | |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3.2:89806482-89806501 | None:intergenic | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3.2:89805846-89805865 | MS.gene42294:CDS | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3.2:89806108-89806127 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3.2:89806781-89806800 | MS.gene42294:CDS | 40.0% | |
| TGTTCAATGCGCGTATCAAA+CGG | - | chr3.2:89806768-89806787 | MS.gene42294:CDS | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3.2:89806109-89806128 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | chr3.2:89806410-89806429 | MS.gene42294:intron | 40.0% | |
| !! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3.2:89805913-89805932 | MS.gene42294:CDS | 40.0% |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3.2:89806799-89806818 | MS.gene42294:CDS | 40.0% |
| !! | CAAGTTATGATGGATAACCG+TGG | + | chr3.2:89806443-89806462 | None:intergenic | 40.0% |
| !! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3.2:89805914-89805933 | MS.gene42294:CDS | 40.0% |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3.2:89806785-89806804 | MS.gene42294:CDS | 45.0% | |
| AGTAAAGGGAAGGGTCGAAT+GGG | + | chr3.2:89806963-89806982 | None:intergenic | 45.0% | |
| ATATGGAACCCCACTTGGAT+TGG | - | chr3.2:89806415-89806434 | MS.gene42294:intron | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3.2:89806871-89806890 | MS.gene42294:CDS | 45.0% | |
| ATTGAGCGGAGCTGAGTAAA+GGG | + | chr3.2:89806977-89806996 | None:intergenic | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3.2:89806871-89806890 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3.2:89806868-89806887 | MS.gene42294:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3.2:89806865-89806884 | MS.gene42294:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3.2:89805853-89805872 | MS.gene42294:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3.2:89806736-89806755 | MS.gene42294:intron | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3.2:89806732-89806751 | MS.gene42294:intron | 45.0% | |
| GTTCTCCAGGAGTAACCTTT+CGG | - | chr3.2:89806710-89806729 | MS.gene42294:intron | 45.0% | |
| TACGCGCATTGAACATGATC+TGG | + | chr3.2:89806763-89806782 | None:intergenic | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3.2:89806660-89806679 | MS.gene42294:intron | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3.2:89806667-89806686 | MS.gene42294:intron | 45.0% |
| AACCGTGGATCCAATCCAAG+TGG | + | chr3.2:89806428-89806447 | None:intergenic | 50.0% | |
| ACACACCGAAAGGTTACTCC+TGG | + | chr3.2:89806718-89806737 | None:intergenic | 50.0% | |
| ACCGTGGATCCAATCCAAGT+GGG | + | chr3.2:89806427-89806446 | None:intergenic | 50.0% | |
| ACTCACTCTCACACACCGAA+AGG | + | chr3.2:89806728-89806747 | None:intergenic | 50.0% | |
| AGCTCCGCTCAATGCTTTCA+TGG | - | chr3.2:89806984-89807003 | MS.gene42294:CDS | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3.2:89806784-89806803 | MS.gene42294:CDS | 50.0% | |
| CATTGAGCGGAGCTGAGTAA+AGG | + | chr3.2:89806978-89806997 | None:intergenic | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3.2:89806021-89806040 | None:intergenic | 50.0% | |
| CTCAATGCTTTCATGGCAGC+TGG | - | chr3.2:89806991-89807010 | MS.gene42294:CDS | 50.0% | |
| GAGTAAAGGGAAGGGTCGAA+TGG | + | chr3.2:89806964-89806983 | None:intergenic | 50.0% | |
| GCAACTACAGCTACAACCAG+CGG | - | chr3.2:89806934-89806953 | MS.gene42294:CDS | 50.0% | |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3.2:89806666-89806685 | MS.gene42294:intron | 50.0% |
| !! | GCTGCCATGAAAGCATTGAG+CGG | + | chr3.2:89806991-89807010 | None:intergenic | 50.0% |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3.2:89806703-89806722 | None:intergenic | 55.0% | |
| AGCGGAGCTGAGTAAAGGGA+AGG | + | chr3.2:89806973-89806992 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3.2:89806105-89806124 | None:intergenic | 55.0% | |
| CCGTGGATCCAATCCAAGTG+GGG | + | chr3.2:89806426-89806445 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3.2:89806018-89806037 | MS.gene42294:CDS | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3.2:89806699-89806718 | None:intergenic | 55.0% | |
| GCGGAGCTGAGTAAAGGGAA+GGG | + | chr3.2:89806972-89806991 | None:intergenic | 55.0% | |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3.2:89806684-89806703 | MS.gene42294:intron | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3.2:89806098-89806117 | None:intergenic | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3.2:89806085-89806104 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+CGG | - | chr3.2:89806423-89806442 | MS.gene42294:intron | 55.0% |
| AGGGTCGAATGGGATACCGC+TGG | + | chr3.2:89806953-89806972 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3.2:89806099-89806118 | MS.gene42294:CDS | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3.2:89806697-89806716 | MS.gene42294:intron | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3.2:89806700-89806719 | None:intergenic | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+TGG | + | chr3.2:89805976-89805995 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3.2:89806099-89806118 | None:intergenic | 60.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3.2:89806093-89806112 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89805838 | 89807047 | 89805838 | ID=MS.gene42294 |
| chr3.2 | mRNA | 89805838 | 89807047 | 89805838 | ID=MS.gene42294.t1;Parent=MS.gene42294 |
| chr3.2 | exon | 89806765 | 89807047 | 89806765 | ID=MS.gene42294.t1.exon1;Parent=MS.gene42294.t1 |
| chr3.2 | CDS | 89806765 | 89807047 | 89806765 | ID=cds.MS.gene42294.t1;Parent=MS.gene42294.t1 |
| chr3.2 | exon | 89805838 | 89806208 | 89805838 | ID=MS.gene42294.t1.exon2;Parent=MS.gene42294.t1 |
| chr3.2 | CDS | 89805838 | 89806208 | 89805838 | ID=cds.MS.gene42294.t1;Parent=MS.gene42294.t1 |
| Gene Sequence |
| Protein sequence |
