Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43083.t1 | XP_013464916.1 | 98.6 | 426 | 6 | 0 | 1 | 426 | 1 | 426 | 1.10E-238 | 835.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43083.t1 | Q9SGD6 | 81.2 | 388 | 54 | 5 | 49 | 424 | 26 | 406 | 1.5e-172 | 607.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43083.t1 | A0A072VBH8 | 98.6 | 426 | 6 | 0 | 1 | 426 | 1 | 426 | 8.0e-239 | 835.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049594 | MS.gene43083 | 0.800381 | 1.48E-48 | -1.69E-46 |
MS.gene052190 | MS.gene43083 | -0.811662 | 6.26E-51 | -1.69E-46 |
MS.gene055358 | MS.gene43083 | -0.813022 | 3.16E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43083.t1 | MTR_2g084875 | 98.592 | 426 | 6 | 0 | 1 | 426 | 1 | 426 | 0.0 | 873 |
MS.gene43083.t1 | MTR_4g055310 | 80.751 | 426 | 65 | 6 | 1 | 424 | 1 | 411 | 0.0 | 681 |
MS.gene43083.t1 | MTR_4g132250 | 67.105 | 304 | 98 | 1 | 116 | 419 | 89 | 390 | 4.58e-150 | 431 |
MS.gene43083.t1 | MTR_2g088130 | 65.033 | 306 | 105 | 1 | 116 | 421 | 71 | 374 | 1.36e-148 | 427 |
MS.gene43083.t1 | MTR_4g061070 | 66.013 | 306 | 99 | 2 | 116 | 421 | 73 | 373 | 4.10e-141 | 408 |
MS.gene43083.t1 | MTR_2g088130 | 67.029 | 276 | 89 | 1 | 146 | 421 | 51 | 324 | 3.22e-135 | 391 |
MS.gene43083.t1 | MTR_2g088130 | 64.504 | 262 | 91 | 1 | 116 | 377 | 71 | 330 | 1.52e-123 | 362 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43083.t1 | AT1G08250 | 81.250 | 384 | 53 | 5 | 49 | 420 | 26 | 402 | 0.0 | 613 |
MS.gene43083.t1 | AT2G27820 | 82.289 | 367 | 58 | 3 | 58 | 421 | 46 | 408 | 0.0 | 591 |
MS.gene43083.t1 | AT3G44720 | 72.886 | 402 | 88 | 5 | 32 | 424 | 28 | 417 | 0.0 | 574 |
MS.gene43083.t1 | AT5G22630 | 70.602 | 432 | 107 | 4 | 1 | 425 | 1 | 419 | 0.0 | 564 |
MS.gene43083.t1 | AT1G11790 | 63.072 | 306 | 111 | 1 | 116 | 421 | 88 | 391 | 3.99e-145 | 419 |
MS.gene43083.t1 | AT3G07630 | 66.990 | 309 | 95 | 2 | 113 | 421 | 78 | 379 | 1.50e-139 | 404 |
MS.gene43083.t1 | AT3G07630 | 66.990 | 309 | 95 | 2 | 113 | 421 | 78 | 379 | 1.50e-139 | 404 |
MS.gene43083.t1 | AT3G07630 | 66.990 | 309 | 95 | 2 | 113 | 421 | 78 | 379 | 1.50e-139 | 404 |
MS.gene43083.t1 | AT1G11790 | 61.728 | 243 | 91 | 1 | 116 | 358 | 88 | 328 | 6.04e-108 | 322 |
Find 121 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCCGTGCTGCCGAGCTTTA+TGG | 0.134872 | 2.4:+14347955 | MS.gene43083:CDS |
CGATCCGTACGTGGAATTAT+TGG | 0.235123 | 2.4:-14348051 | None:intergenic |
CACGTCTTTCTTGAGAGTTT+TGG | 0.267407 | 2.4:+14348329 | MS.gene43083:CDS |
TCGGAGATTGTTAACGGTTT+TGG | 0.276157 | 2.4:-14347457 | None:intergenic |
CGTTTCAAGCCGTCGAGCTT+TGG | 0.306242 | 2.4:+14347614 | MS.gene43083:CDS |
CAAGGAATTGCTTCGCAGTT+TGG | 0.320220 | 2.4:-14347574 | None:intergenic |
ATGAGCTTTGCCAATCGGTT+CGG | 0.347567 | 2.4:-14347261 | None:intergenic |
AAACGCGTTGGCTGAAGTTC+AGG | 0.354971 | 2.4:+14348302 | MS.gene43083:CDS |
TGAGCTTTGCCAATCGGTTC+GGG | 0.367455 | 2.4:-14347260 | None:intergenic |
ACGAATCGGGTCACGTTACT+CGG | 0.372580 | 2.4:-14348012 | None:intergenic |
TACGGTTCAATTTATGAATC+CGG | 0.377562 | 2.4:+14347232 | MS.gene43083:CDS |
CGGTTCGGACCGAGCCGGTT+TGG | 0.384226 | 2.4:-14347190 | None:intergenic |
TTGTTATGTGGTTGAAATTG+AGG | 0.385367 | 2.4:-14347147 | None:intergenic |
TACGTGGAATTATTGGTTCT+CGG | 0.399885 | 2.4:-14348044 | None:intergenic |
CGCCGACCGTGCCGTTCTCC+CGG | 0.401840 | 2.4:+14347639 | MS.gene43083:CDS |
TTCATCGGCGCCGGTGTTGA+CGG | 0.402723 | 2.4:-14347338 | None:intergenic |
CCAATCGGTTCGGGTTGAAC+CGG | 0.407367 | 2.4:-14347251 | None:intergenic |
CTTGAAACGCCACTTCGAAT+TGG | 0.410792 | 2.4:-14347600 | None:intergenic |
CAAACCGGCTCGGTCCGAAC+CGG | 0.410873 | 2.4:+14347191 | MS.gene43083:CDS |
GGTGTTGACGGCGGTGGAAG+TGG | 0.419833 | 2.4:-14347326 | None:intergenic |
CGTGCATCGGTGCCGGAGCT+AGG | 0.422738 | 2.4:-14347480 | None:intergenic |
AAGCTCGGCAGCACGGGCGC+TGG | 0.431811 | 2.4:-14347950 | None:intergenic |
GCATCATCAACAAGCCTAAT+CGG | 0.435985 | 2.4:-14348201 | None:intergenic |
TCCATAAAGCTCGGCAGCAC+GGG | 0.437399 | 2.4:-14347956 | None:intergenic |
GCGGCTTCGGAGTATGCTCC+CGG | 0.439700 | 2.4:-14347535 | None:intergenic |
GTTTCTGTCAAATGTGCTTA+CGG | 0.450930 | 2.4:+14347214 | MS.gene43083:CDS |
CTTGAGCCGTGCATCGGTGC+CGG | 0.455252 | 2.4:-14347487 | None:intergenic |
GCGAGGAGACAGTGATGGAC+CGG | 0.457534 | 2.4:-14347748 | None:intergenic |
AACAATCTCCGACCTAGCTC+CGG | 0.461711 | 2.4:+14347468 | MS.gene43083:CDS |
TGTTATGTGGTTGAAATTGA+GGG | 0.461933 | 2.4:-14347146 | None:intergenic |
AGCACATGAGCTTTGCCAAT+CGG | 0.463772 | 2.4:-14347266 | None:intergenic |
AGGGTGTTGGAAGAGGGAGG+TGG | 0.465964 | 2.4:-14347127 | None:intergenic |
GGCGCCGGTGTTGACGGCGG+TGG | 0.466117 | 2.4:-14347332 | None:intergenic |
ACGTGGAATTATTGGTTCTC+GGG | 0.468317 | 2.4:-14348043 | None:intergenic |
CACTGTCTCCTCGCTCTCCC+CGG | 0.469363 | 2.4:+14347757 | MS.gene43083:CDS |
GAAATTGAGGGTGTTGGAAG+AGG | 0.470220 | 2.4:-14347134 | None:intergenic |
CTCGGGCCAACATAACGAAT+CGG | 0.470637 | 2.4:-14348026 | None:intergenic |
AGTATGCTCCCGGGACTCCT+TGG | 0.480032 | 2.4:-14347525 | None:intergenic |
GTGGTTGAAATTGAGGGTGT+TGG | 0.481711 | 2.4:-14347140 | None:intergenic |
GCTAGGTCGGAGATTGTTAA+CGG | 0.485559 | 2.4:-14347463 | None:intergenic |
CGTCGCTTACCAAGGAGTCC+CGG | 0.492434 | 2.4:+14347516 | MS.gene43083:CDS |
AAATTGAGGGTGTTGGAAGA+GGG | 0.492645 | 2.4:-14347133 | None:intergenic |
CTCATCGTAACCGTCCGATT+AGG | 0.493486 | 2.4:+14348187 | MS.gene43083:CDS |
GTTTAACGAAGATTGAATCA+AGG | 0.498900 | 2.4:+14348163 | MS.gene43083:CDS |
GGCCGTGGAAATTTCCAAAC+CGG | 0.499246 | 2.4:+14347176 | MS.gene43083:CDS |
CGGAGGCTTGAGCCGTGCAT+CGG | 0.506028 | 2.4:-14347493 | None:intergenic |
CTTGTTGATGATGCAAATGT+TGG | 0.508037 | 2.4:+14348210 | MS.gene43083:CDS |
AAGTGGCTTTGAAATTTCTC+CGG | 0.511464 | 2.4:-14347431 | None:intergenic |
AAACCGGCTCGGTCCGAACC+GGG | 0.515637 | 2.4:+14347192 | MS.gene43083:CDS |
GGAGGAGGAGGTCGTAGTTA+CGG | 0.523218 | 2.4:-14347690 | None:intergenic |
TTCTCCGGTGAGGTTTCCGA+TGG | 0.523780 | 2.4:-14347416 | None:intergenic |
CGAGGAGACAGTGATGGACC+GGG | 0.526691 | 2.4:-14347747 | None:intergenic |
ACTTCCACCGCCGTCAACAC+CGG | 0.528044 | 2.4:+14347328 | MS.gene43083:CDS |
CTTCTCCGACGATGTGGAGA+CGG | 0.530142 | 2.4:-14347717 | None:intergenic |
GTCGCTTACCAAGGAGTCCC+GGG | 0.532943 | 2.4:+14347517 | MS.gene43083:CDS |
CTCCCGGTGGAAAATTCCCT+CGG | 0.533003 | 2.4:+14347655 | MS.gene43083:CDS |
ACATAACAACAACACGGCCG+TGG | 0.534054 | 2.4:+14347161 | MS.gene43083:CDS |
TGGCGATAGCTGCAGTGTCG+CGG | 0.534684 | 2.4:-14347930 | None:intergenic |
TGTGGAGACGGTGACGGAGG+AGG | 0.537316 | 2.4:-14347705 | None:intergenic |
TTCTGATTCCGGGGAGAGCG+AGG | 0.539157 | 2.4:-14347765 | None:intergenic |
TCGGGCCAACATAACGAATC+GGG | 0.540780 | 2.4:-14348025 | None:intergenic |
CACCGGGAGAACGGCACGGT+CGG | 0.542354 | 2.4:-14347641 | None:intergenic |
GCATACTCCGAAGCCGCCGC+CGG | 0.543941 | 2.4:+14347541 | MS.gene43083:CDS |
GGATTAAATATCTTAGCAGA+TGG | 0.548048 | 2.4:+14347976 | MS.gene43083:CDS |
AGCCGGTTTGGAAATTTCCA+CGG | 0.549886 | 2.4:-14347178 | None:intergenic |
ATCCATAAAGCTCGGCAGCA+CGG | 0.552752 | 2.4:-14347957 | None:intergenic |
GATATTTAATCCATAAAGCT+CGG | 0.553451 | 2.4:-14347965 | None:intergenic |
CGAATCGGGTCACGTTACTC+GGG | 0.554957 | 2.4:-14348011 | None:intergenic |
CGTGACCCGATTCGTTATGT+TGG | 0.557359 | 2.4:+14348020 | MS.gene43083:CDS |
ACGGCCGTGTTGTTGTTATG+TGG | 0.560779 | 2.4:-14347159 | None:intergenic |
GGAGACGGTGACGGAGGAGG+AGG | 0.561047 | 2.4:-14347702 | None:intergenic |
TTGAGGGTGTTGGAAGAGGG+AGG | 0.565084 | 2.4:-14347130 | None:intergenic |
CATCGGTGCCGGAGCTAGGT+CGG | 0.567651 | 2.4:-14347476 | None:intergenic |
CTGCTTCACGTGCGACGTTG+AGG | 0.571118 | 2.4:-14347861 | None:intergenic |
CCGGTTCAACCCGAACCGAT+TGG | 0.571365 | 2.4:+14347251 | MS.gene43083:CDS |
TGGAAATTTCCAAACCGGCT+CGG | 0.578350 | 2.4:+14347181 | MS.gene43083:CDS |
CATTTGACAGAAACCCGGTT+CGG | 0.579637 | 2.4:-14347205 | None:intergenic |
GTCCAGGGTGTCATATCCAT+AGG | 0.579769 | 2.4:-14348360 | None:intergenic |
GGTTTCCGATGGGAACAAGC+TGG | 0.586510 | 2.4:-14347405 | None:intergenic |
GGAGAGCGAGGAGACAGTGA+TGG | 0.588961 | 2.4:-14347753 | None:intergenic |
CTAGCTCCGGCACCGATGCA+CGG | 0.590713 | 2.4:+14347481 | MS.gene43083:CDS |
GATGGGAACAAGCTGGAGAT+CGG | 0.591431 | 2.4:-14347398 | None:intergenic |
AGCCTCCGCGTCGCTTACCA+AGG | 0.596298 | 2.4:+14347508 | MS.gene43083:CDS |
GTTCCCATCGGAAACCTCAC+CGG | 0.598886 | 2.4:+14347412 | MS.gene43083:CDS |
GCCACTTCGAATTGGTCGCA+AGG | 0.603521 | 2.4:-14347592 | None:intergenic |
GAAAACTTTGCAGCTATCAA+CGG | 0.603638 | 2.4:+14347358 | MS.gene43083:CDS |
GAACACACATTAACAAAACT+CGG | 0.604317 | 2.4:+14347838 | MS.gene43083:CDS |
TCCAGGGTGTCATATCCATA+GGG | 0.610493 | 2.4:-14348359 | None:intergenic |
TCGCATTGAGATAAAGCTTG+TGG | 0.611630 | 2.4:-14347817 | None:intergenic |
GTTGAACTTCTCCGACGATG+TGG | 0.613892 | 2.4:-14347723 | None:intergenic |
CGGCTTCGGAGTATGCTCCC+GGG | 0.614890 | 2.4:-14347534 | None:intergenic |
ATCGGCGCCGGTGTTGACGG+CGG | 0.615138 | 2.4:-14347335 | None:intergenic |
AGAACCAATAATTCCACGTA+CGG | 0.615247 | 2.4:+14348047 | MS.gene43083:CDS |
GCTTTGAAATTTCTCCGGTG+AGG | 0.615736 | 2.4:-14347426 | None:intergenic |
CGTCGGAGAAGTTCAACTCC+CGG | 0.615992 | 2.4:+14347729 | MS.gene43083:CDS |
CGACGATGTGGAGACGGTGA+CGG | 0.619755 | 2.4:-14347711 | None:intergenic |
AAACCCGGTTCGGACCGAGC+CGG | 0.621805 | 2.4:-14347195 | None:intergenic |
TCCTTGCGACCAATTCGAAG+TGG | 0.628248 | 2.4:+14347591 | MS.gene43083:CDS |
GATCTCCAGCTTGTTCCCAT+CGG | 0.632237 | 2.4:+14347400 | MS.gene43083:CDS |
GAAGCAGTTGACGATACAGC+AGG | 0.633337 | 2.4:+14347877 | MS.gene43083:CDS |
AGTTAGAGCACAAAACGCGT+TGG | 0.634200 | 2.4:+14348290 | MS.gene43083:CDS |
GTCGGCGATCCAAAGCTCGA+CGG | 0.635888 | 2.4:-14347623 | None:intergenic |
TTTCCACCGGGAGAACGGCA+CGG | 0.637127 | 2.4:-14347645 | None:intergenic |
TACGGTGGATTGAACCGCCG+AGG | 0.637797 | 2.4:-14347672 | None:intergenic |
TTAAATGGACGATCCGTACG+TGG | 0.638943 | 2.4:-14348060 | None:intergenic |
TGACGATACAGCAGGTGCCG+CGG | 0.640188 | 2.4:+14347885 | MS.gene43083:CDS |
CGTCACCGTCTCCACATCGT+CGG | 0.640602 | 2.4:+14347712 | MS.gene43083:CDS |
TCTCCGGTGAGGTTTCCGAT+GGG | 0.641911 | 2.4:-14347415 | None:intergenic |
CATCAACAAGCCTAATCGGA+CGG | 0.642133 | 2.4:-14348197 | None:intergenic |
ACGGTGGATTGAACCGCCGA+GGG | 0.644785 | 2.4:-14347671 | None:intergenic |
CGACCGTGCCGTTCTCCCGG+TGG | 0.649026 | 2.4:+14347642 | MS.gene43083:CDS |
AAGCACATTTGACAGAAACC+CGG | 0.662936 | 2.4:-14347210 | None:intergenic |
CTCCTTGGTAAGCGACGCGG+AGG | 0.666074 | 2.4:-14347510 | None:intergenic |
CGATGTGGAGACGGTGACGG+AGG | 0.671566 | 2.4:-14347708 | None:intergenic |
GGACTCCTTGGTAAGCGACG+CGG | 0.679370 | 2.4:-14347513 | None:intergenic |
GGAGGAGGTCGTAGTTACGG+TGG | 0.683087 | 2.4:-14347687 | None:intergenic |
CTAATCGGACGGTTACGATG+AGG | 0.686334 | 2.4:-14348186 | None:intergenic |
ACCCTATGGATATGACACCC+TGG | 0.690768 | 2.4:+14348358 | MS.gene43083:CDS |
TCAACCACATAACAACAACA+CGG | 0.716010 | 2.4:+14347155 | MS.gene43083:CDS |
GTTAGTTGCAACAAACTCCG+CGG | 0.733174 | 2.4:-14347902 | None:intergenic |
CCGGTGGAAAATTCCCTCGG+CGG | 0.738047 | 2.4:+14347658 | MS.gene43083:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAACAATACTTGTTTTAAA+TGG | - | chr2.4:14348078-14348097 | None:intergenic | 15.0% |
! | GATATTTAATCCATAAAGCT+CGG | - | chr2.4:14347968-14347987 | None:intergenic | 25.0% |
GAACACACATTAACAAAACT+CGG | + | chr2.4:14347838-14347857 | MS.gene43083:CDS | 30.0% | |
GGATTAAATATCTTAGCAGA+TGG | + | chr2.4:14347976-14347995 | MS.gene43083:CDS | 30.0% | |
GTTTAACGAAGATTGAATCA+AGG | + | chr2.4:14348163-14348182 | MS.gene43083:CDS | 30.0% | |
TACGGTTCAATTTATGAATC+CGG | + | chr2.4:14347232-14347251 | MS.gene43083:CDS | 30.0% | |
TGTTATGTGGTTGAAATTGA+GGG | - | chr2.4:14347149-14347168 | None:intergenic | 30.0% | |
TTGTTATGTGGTTGAAATTG+AGG | - | chr2.4:14347150-14347169 | None:intergenic | 30.0% | |
! | AGATATTCTTTTCTGATTCC+GGG | - | chr2.4:14347778-14347797 | None:intergenic | 30.0% |
! | ATTGTTTTCGCTCATGATAA+AGG | + | chr2.4:14348090-14348109 | MS.gene43083:CDS | 30.0% |
! | CAGATATTCTTTTCTGATTC+CGG | - | chr2.4:14347779-14347798 | None:intergenic | 30.0% |
!!! | TGTTGATTTTGAAGCTTCAA+TGG | + | chr2.4:14348263-14348282 | MS.gene43083:CDS | 30.0% |
AGAACCAATAATTCCACGTA+CGG | + | chr2.4:14348047-14348066 | MS.gene43083:CDS | 35.0% | |
GAAAACTTTGCAGCTATCAA+CGG | + | chr2.4:14347358-14347377 | MS.gene43083:CDS | 35.0% | |
GTTTCTGTCAAATGTGCTTA+CGG | + | chr2.4:14347214-14347233 | MS.gene43083:CDS | 35.0% | |
TCAACCACATAACAACAACA+CGG | + | chr2.4:14347155-14347174 | MS.gene43083:CDS | 35.0% | |
! | ACGTCTTTCTTGAGAGTTTT+GGG | + | chr2.4:14348330-14348349 | MS.gene43083:CDS | 35.0% |
! | GATAGCTGCAAAGTTTTCAT+CGG | - | chr2.4:14347356-14347375 | None:intergenic | 35.0% |
! | GATATTCTTTTCTGATTCCG+GGG | - | chr2.4:14347777-14347796 | None:intergenic | 35.0% |
!! | AAGTGGCTTTGAAATTTCTC+CGG | - | chr2.4:14347434-14347453 | None:intergenic | 35.0% |
!! | CTTGTTGATGATGCAAATGT+TGG | + | chr2.4:14348210-14348229 | MS.gene43083:CDS | 35.0% |
!! | TACGTGGAATTATTGGTTCT+CGG | - | chr2.4:14348047-14348066 | None:intergenic | 35.0% |
!!! | GATCGGTTATGTTTGTTTTG+TGG | - | chr2.4:14347384-14347403 | None:intergenic | 35.0% |
AAGCACATTTGACAGAAACC+CGG | - | chr2.4:14347213-14347232 | None:intergenic | 40.0% | |
GCATCATCAACAAGCCTAAT+CGG | - | chr2.4:14348204-14348223 | None:intergenic | 40.0% | |
TCGCATTGAGATAAAGCTTG+TGG | - | chr2.4:14347820-14347839 | None:intergenic | 40.0% | |
! | CACGTCTTTCTTGAGAGTTT+TGG | + | chr2.4:14348329-14348348 | MS.gene43083:CDS | 40.0% |
! | GCAGTTTGGATAAGCTTTTC+CGG | - | chr2.4:14347563-14347582 | None:intergenic | 40.0% |
! | TCGGAGATTGTTAACGGTTT+TGG | - | chr2.4:14347460-14347479 | None:intergenic | 40.0% |
! | TGCTTTCAGCTTTTGCGTTT+AGG | + | chr2.4:14348133-14348152 | MS.gene43083:CDS | 40.0% |
!! | AAATTGAGGGTGTTGGAAGA+GGG | - | chr2.4:14347136-14347155 | None:intergenic | 40.0% |
!! | ACGTGGAATTATTGGTTCTC+GGG | - | chr2.4:14348046-14348065 | None:intergenic | 40.0% |
!! | GAGATTGTTAACGGTTTTGG+TGG | - | chr2.4:14347457-14347476 | None:intergenic | 40.0% |
!!! | AGTTTTGGGTAGTTACCCTA+TGG | + | chr2.4:14348344-14348363 | MS.gene43083:CDS | 40.0% |
AGCACATGAGCTTTGCCAAT+CGG | - | chr2.4:14347269-14347288 | None:intergenic | 45.0% | |
AGTTAGAGCACAAAACGCGT+TGG | + | chr2.4:14348290-14348309 | MS.gene43083:CDS | 45.0% | |
ATGAGCTTTGCCAATCGGTT+CGG | - | chr2.4:14347264-14347283 | None:intergenic | 45.0% | |
CAAGGAATTGCTTCGCAGTT+TGG | - | chr2.4:14347577-14347596 | None:intergenic | 45.0% | |
CATCAACAAGCCTAATCGGA+CGG | - | chr2.4:14348200-14348219 | None:intergenic | 45.0% | |
CATTTGACAGAAACCCGGTT+CGG | - | chr2.4:14347208-14347227 | None:intergenic | 45.0% | |
CGATCCGTACGTGGAATTAT+TGG | - | chr2.4:14348054-14348073 | None:intergenic | 45.0% | |
CTTGAAACGCCACTTCGAAT+TGG | - | chr2.4:14347603-14347622 | None:intergenic | 45.0% | |
GCTAGGTCGGAGATTGTTAA+CGG | - | chr2.4:14347466-14347485 | None:intergenic | 45.0% | |
GTTAGTTGCAACAAACTCCG+CGG | - | chr2.4:14347905-14347924 | None:intergenic | 45.0% | |
TGGAAATTTCCAAACCGGCT+CGG | + | chr2.4:14347181-14347200 | MS.gene43083:CDS | 45.0% | |
TTAAATGGACGATCCGTACG+TGG | - | chr2.4:14348063-14348082 | None:intergenic | 45.0% | |
! | GTGGTTGAAATTGAGGGTGT+TGG | - | chr2.4:14347143-14347162 | None:intergenic | 45.0% |
! | GTTTGGATAAGCTTTTCCGG+CGG | - | chr2.4:14347560-14347579 | None:intergenic | 45.0% |
! | TCCAGGGTGTCATATCCATA+GGG | - | chr2.4:14348362-14348381 | None:intergenic | 45.0% |
!! | AGCCGGTTTGGAAATTTCCA+CGG | - | chr2.4:14347181-14347200 | None:intergenic | 45.0% |
!! | GAAATTGAGGGTGTTGGAAG+AGG | - | chr2.4:14347137-14347156 | None:intergenic | 45.0% |
!! | GCTTTGAAATTTCTCCGGTG+AGG | - | chr2.4:14347429-14347448 | None:intergenic | 45.0% |
!! | GTTAACGGTTTTGGTGGAAG+TGG | - | chr2.4:14347451-14347470 | None:intergenic | 45.0% |
AACAATCTCCGACCTAGCTC+CGG | + | chr2.4:14347468-14347487 | MS.gene43083:CDS | 50.0% | |
ACATAACAACAACACGGCCG+TGG | + | chr2.4:14347161-14347180 | MS.gene43083:CDS | 50.0% | |
ACCCTATGGATATGACACCC+TGG | + | chr2.4:14348358-14348377 | MS.gene43083:CDS | 50.0% | |
ACGAATCGGGTCACGTTACT+CGG | - | chr2.4:14348015-14348034 | None:intergenic | 50.0% | |
ATCCATAAAGCTCGGCAGCA+CGG | - | chr2.4:14347960-14347979 | None:intergenic | 50.0% | |
CTAATCGGACGGTTACGATG+AGG | - | chr2.4:14348189-14348208 | None:intergenic | 50.0% | |
CTCATCGTAACCGTCCGATT+AGG | + | chr2.4:14348187-14348206 | MS.gene43083:CDS | 50.0% | |
CTCGGGCCAACATAACGAAT+CGG | - | chr2.4:14348029-14348048 | None:intergenic | 50.0% | |
GAAGCAGTTGACGATACAGC+AGG | + | chr2.4:14347877-14347896 | MS.gene43083:CDS | 50.0% | |
GATGGGAACAAGCTGGAGAT+CGG | - | chr2.4:14347401-14347420 | None:intergenic | 50.0% | |
GGCCGTGGAAATTTCCAAAC+CGG | + | chr2.4:14347176-14347195 | MS.gene43083:CDS | 50.0% | |
GTTGAACTTCTCCGACGATG+TGG | - | chr2.4:14347726-14347745 | None:intergenic | 50.0% | |
TCCTTGCGACCAATTCGAAG+TGG | + | chr2.4:14347591-14347610 | MS.gene43083:CDS | 50.0% | |
TCGGGCCAACATAACGAATC+GGG | - | chr2.4:14348028-14348047 | None:intergenic | 50.0% | |
! | ACGGCCGTGTTGTTGTTATG+TGG | - | chr2.4:14347162-14347181 | None:intergenic | 50.0% |
! | CGTGACCCGATTCGTTATGT+TGG | + | chr2.4:14348020-14348039 | MS.gene43083:CDS | 50.0% |
! | GATCTCCAGCTTGTTCCCAT+CGG | + | chr2.4:14347400-14347419 | MS.gene43083:CDS | 50.0% |
! | GGAATTTTCCACCGGGAGAA+CGG | - | chr2.4:14347653-14347672 | None:intergenic | 50.0% |
! | GTCCAGGGTGTCATATCCAT+AGG | - | chr2.4:14348363-14348382 | None:intergenic | 50.0% |
! | TGAGCTTTGCCAATCGGTTC+GGG | - | chr2.4:14347263-14347282 | None:intergenic | 50.0% |
! | TGCAAAGTTTTCATCGGCGC+CGG | - | chr2.4:14347350-14347369 | None:intergenic | 50.0% |
!! | AAACGCGTTGGCTGAAGTTC+AGG | + | chr2.4:14348302-14348321 | MS.gene43083:CDS | 50.0% |
CGAATCGGGTCACGTTACTC+GGG | - | chr2.4:14348014-14348033 | None:intergenic | 55.0% | |
CGTCGGAGAAGTTCAACTCC+CGG | + | chr2.4:14347729-14347748 | MS.gene43083:CDS | 55.0% | |
CGTTTCAAGCCGTCGAGCTT+TGG | + | chr2.4:14347614-14347633 | MS.gene43083:CDS | 55.0% | |
CTCCCGGTGGAAAATTCCCT+CGG | + | chr2.4:14347655-14347674 | MS.gene43083:CDS | 55.0% | |
CTTCTCCGACGATGTGGAGA+CGG | - | chr2.4:14347720-14347739 | None:intergenic | 55.0% | |
GCCACTTCGAATTGGTCGCA+AGG | - | chr2.4:14347595-14347614 | None:intergenic | 55.0% | |
GGAGGAGGAGGTCGTAGTTA+CGG | - | chr2.4:14347693-14347712 | None:intergenic | 55.0% | |
GGTTTCCGATGGGAACAAGC+TGG | - | chr2.4:14347408-14347427 | None:intergenic | 55.0% | |
GTTCCCATCGGAAACCTCAC+CGG | + | chr2.4:14347412-14347431 | MS.gene43083:CDS | 55.0% | |
TCCATAAAGCTCGGCAGCAC+GGG | - | chr2.4:14347959-14347978 | None:intergenic | 55.0% | |
TCTCCGGTGAGGTTTCCGAT+GGG | - | chr2.4:14347418-14347437 | None:intergenic | 55.0% | |
TTCTCCGGTGAGGTTTCCGA+TGG | - | chr2.4:14347419-14347438 | None:intergenic | 55.0% | |
! | TGGATAAGCTTTTCCGGCGG+CGG | - | chr2.4:14347557-14347576 | None:intergenic | 55.0% |
!! | CCAATCGGTTCGGGTTGAAC+CGG | - | chr2.4:14347254-14347273 | None:intergenic | 55.0% |
!! | TTGAGGGTGTTGGAAGAGGG+AGG | - | chr2.4:14347133-14347152 | None:intergenic | 55.0% |
ACTTCCACCGCCGTCAACAC+CGG | + | chr2.4:14347328-14347347 | MS.gene43083:CDS | 60.0% | |
AGTATGCTCCCGGGACTCCT+TGG | - | chr2.4:14347528-14347547 | None:intergenic | 60.0% | |
CCGGTGGAAAATTCCCTCGG+CGG | + | chr2.4:14347658-14347677 | MS.gene43083:CDS | 60.0% | |
CCGGTTCAACCCGAACCGAT+TGG | + | chr2.4:14347251-14347270 | MS.gene43083:CDS | 60.0% | |
CGACGATGTGGAGACGGTGA+CGG | - | chr2.4:14347714-14347733 | None:intergenic | 60.0% | |
CGTCACCGTCTCCACATCGT+CGG | + | chr2.4:14347712-14347731 | MS.gene43083:CDS | 60.0% | |
CGTCGCTTACCAAGGAGTCC+CGG | + | chr2.4:14347516-14347535 | MS.gene43083:CDS | 60.0% | |
CTGCTTCACGTGCGACGTTG+AGG | - | chr2.4:14347864-14347883 | None:intergenic | 60.0% | |
GGACTCCTTGGTAAGCGACG+CGG | - | chr2.4:14347516-14347535 | None:intergenic | 60.0% | |
GGAGAGCGAGGAGACAGTGA+TGG | - | chr2.4:14347756-14347775 | None:intergenic | 60.0% | |
GGAGGAGGTCGTAGTTACGG+TGG | - | chr2.4:14347690-14347709 | None:intergenic | 60.0% | |
GTCGCTTACCAAGGAGTCCC+GGG | + | chr2.4:14347517-14347536 | MS.gene43083:CDS | 60.0% | |
GTCGGCGATCCAAAGCTCGA+CGG | - | chr2.4:14347626-14347645 | None:intergenic | 60.0% | |
TGGCGATAGCTGCAGTGTCG+CGG | - | chr2.4:14347933-14347952 | None:intergenic | 60.0% | |
TTCTGATTCCGGGGAGAGCG+AGG | - | chr2.4:14347768-14347787 | None:intergenic | 60.0% | |
TTTCCACCGGGAGAACGGCA+CGG | - | chr2.4:14347648-14347667 | None:intergenic | 60.0% | |
! | CCGCCGAGGGAATTTTCCAC+CGG | - | chr2.4:14347661-14347680 | None:intergenic | 60.0% |
! | CGCCGAGGGAATTTTCCACC+GGG | - | chr2.4:14347660-14347679 | None:intergenic | 60.0% |
! | TGACGATACAGCAGGTGCCG+CGG | + | chr2.4:14347885-14347904 | MS.gene43083:CDS | 60.0% |
!! | ACGGTGGATTGAACCGCCGA+GGG | - | chr2.4:14347674-14347693 | None:intergenic | 60.0% |
!! | AGGGTGTTGGAAGAGGGAGG+TGG | - | chr2.4:14347130-14347149 | None:intergenic | 60.0% |
!! | CGAGGAGACAGTGATGGACC+GGG | - | chr2.4:14347750-14347769 | None:intergenic | 60.0% |
!! | GCGAGGAGACAGTGATGGAC+CGG | - | chr2.4:14347751-14347770 | None:intergenic | 60.0% |
!! | TACGGTGGATTGAACCGCCG+AGG | - | chr2.4:14347675-14347694 | None:intergenic | 60.0% |
!! | TTCATCGGCGCCGGTGTTGA+CGG | - | chr2.4:14347341-14347360 | None:intergenic | 60.0% |
AGCCTCCGCGTCGCTTACCA+AGG | + | chr2.4:14347508-14347527 | MS.gene43083:CDS | 65.0% | |
CACTGTCTCCTCGCTCTCCC+CGG | + | chr2.4:14347757-14347776 | MS.gene43083:CDS | 65.0% | |
CGGAGGCTTGAGCCGTGCAT+CGG | - | chr2.4:14347496-14347515 | None:intergenic | 65.0% | |
CGGCTTCGGAGTATGCTCCC+GGG | - | chr2.4:14347537-14347556 | None:intergenic | 65.0% | |
CTCCTTGGTAAGCGACGCGG+AGG | - | chr2.4:14347513-14347532 | None:intergenic | 65.0% | |
GCCCGTGCTGCCGAGCTTTA+TGG | + | chr2.4:14347955-14347974 | MS.gene43083:CDS | 65.0% | |
GCGGCTTCGGAGTATGCTCC+CGG | - | chr2.4:14347538-14347557 | None:intergenic | 65.0% | |
! | AGCTTTTCCGGCGGCGGCTT+CGG | - | chr2.4:14347551-14347570 | None:intergenic | 65.0% |
! | CGATGTGGAGACGGTGACGG+AGG | - | chr2.4:14347711-14347730 | None:intergenic | 65.0% |
! | CTTGAGCCGTGCATCGGTGC+CGG | - | chr2.4:14347490-14347509 | None:intergenic | 65.0% |
!! | AAACCCGGTTCGGACCGAGC+CGG | - | chr2.4:14347198-14347217 | None:intergenic | 65.0% |
!! | AAACCGGCTCGGTCCGAACC+GGG | + | chr2.4:14347192-14347211 | MS.gene43083:CDS | 65.0% |
!! | CAAACCGGCTCGGTCCGAAC+CGG | + | chr2.4:14347191-14347210 | MS.gene43083:CDS | 65.0% |
!! | CATCGGTGCCGGAGCTAGGT+CGG | - | chr2.4:14347479-14347498 | None:intergenic | 65.0% |
!! | CTAGCTCCGGCACCGATGCA+CGG | + | chr2.4:14347481-14347500 | MS.gene43083:CDS | 65.0% |
!! | GGTGTTGACGGCGGTGGAAG+TGG | - | chr2.4:14347329-14347348 | None:intergenic | 65.0% |
!! | TGTGGAGACGGTGACGGAGG+AGG | - | chr2.4:14347708-14347727 | None:intergenic | 65.0% |
CACCGGGAGAACGGCACGGT+CGG | - | chr2.4:14347644-14347663 | None:intergenic | 70.0% | |
GCATACTCCGAAGCCGCCGC+CGG | + | chr2.4:14347541-14347560 | MS.gene43083:CDS | 70.0% | |
! | CGGTTCGGACCGAGCCGGTT+TGG | - | chr2.4:14347193-14347212 | None:intergenic | 70.0% |
!! | ATCGGCGCCGGTGTTGACGG+CGG | - | chr2.4:14347338-14347357 | None:intergenic | 70.0% |
!! | CGTGCATCGGTGCCGGAGCT+AGG | - | chr2.4:14347483-14347502 | None:intergenic | 70.0% |
!! | GGAGACGGTGACGGAGGAGG+AGG | - | chr2.4:14347705-14347724 | None:intergenic | 70.0% |
AAGCTCGGCAGCACGGGCGC+TGG | - | chr2.4:14347953-14347972 | None:intergenic | 75.0% | |
! | CGACCGTGCCGTTCTCCCGG+TGG | + | chr2.4:14347642-14347661 | MS.gene43083:CDS | 75.0% |
! | CGCCGACCGTGCCGTTCTCC+CGG | + | chr2.4:14347639-14347658 | MS.gene43083:CDS | 75.0% |
!!! | GGCGCCGGTGTTGACGGCGG+TGG | - | chr2.4:14347335-14347354 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 14347112 | 14348392 | 14347112 | ID=MS.gene43083 |
chr2.4 | mRNA | 14347112 | 14348392 | 14347112 | ID=MS.gene43083.t1;Parent=MS.gene43083 |
chr2.4 | exon | 14347112 | 14348392 | 14347112 | ID=MS.gene43083.t1.exon1;Parent=MS.gene43083.t1 |
chr2.4 | CDS | 14347112 | 14348392 | 14347112 | ID=cds.MS.gene43083.t1;Parent=MS.gene43083.t1 |
Gene Sequence |
Protein sequence |