Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43279.t1 | XP_003608925.1 | 97.3 | 401 | 11 | 0 | 1 | 401 | 1 | 401 | 3.00E-225 | 790.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43279.t1 | O48716 | 34.1 | 340 | 199 | 8 | 59 | 394 | 98 | 416 | 3.6e-46 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43279.t1 | G7JNR9 | 97.3 | 401 | 11 | 0 | 1 | 401 | 1 | 401 | 2.1e-225 | 790.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43279 | MS.gene006731 | PPI |
| MS.gene43279 | MS.gene070761 | PPI |
| MS.gene43279 | MS.gene070760 | PPI |
| MS.gene43279 | MS.gene045436 | PPI |
| MS.gene43279 | MS.gene070758 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43279.t1 | MTR_4g106480 | 97.257 | 401 | 11 | 0 | 1 | 401 | 1 | 401 | 0.0 | 801 |
| MS.gene43279.t1 | MTR_3g078380 | 62.774 | 411 | 116 | 10 | 14 | 401 | 18 | 414 | 6.56e-173 | 489 |
| MS.gene43279.t1 | MTR_5g035980 | 50.739 | 406 | 158 | 10 | 33 | 401 | 48 | 448 | 5.62e-129 | 379 |
| MS.gene43279.t1 | MTR_8g089650 | 46.253 | 387 | 177 | 11 | 26 | 398 | 61 | 430 | 1.97e-107 | 323 |
| MS.gene43279.t1 | MTR_4g104410 | 43.526 | 363 | 183 | 12 | 39 | 397 | 20 | 364 | 5.74e-84 | 261 |
| MS.gene43279.t1 | MTR_5g018520 | 41.003 | 339 | 179 | 6 | 59 | 395 | 99 | 418 | 2.77e-81 | 257 |
| MS.gene43279.t1 | MTR_1g021590 | 41.691 | 343 | 169 | 11 | 59 | 394 | 111 | 429 | 1.08e-79 | 253 |
| MS.gene43279.t1 | MTR_4g068457 | 38.484 | 343 | 188 | 7 | 59 | 395 | 130 | 455 | 5.14e-76 | 244 |
| MS.gene43279.t1 | MTR_2g060070 | 35.965 | 342 | 191 | 12 | 60 | 399 | 67 | 382 | 1.16e-64 | 212 |
| MS.gene43279.t1 | MTR_2g101410 | 32.593 | 405 | 235 | 13 | 5 | 395 | 26 | 406 | 8.56e-51 | 176 |
| MS.gene43279.t1 | MTR_3g110185 | 34.734 | 357 | 204 | 12 | 48 | 398 | 78 | 411 | 1.99e-50 | 182 |
| MS.gene43279.t1 | MTR_1g034785 | 26.255 | 259 | 135 | 10 | 176 | 392 | 114 | 358 | 1.87e-15 | 78.2 |
| MS.gene43279.t1 | MTR_1g072140 | 29.282 | 181 | 116 | 6 | 170 | 347 | 18 | 189 | 1.15e-12 | 68.6 |
| MS.gene43279.t1 | MTR_8g028700 | 28.251 | 223 | 124 | 11 | 179 | 394 | 230 | 423 | 1.84e-12 | 69.3 |
| MS.gene43279.t1 | MTR_3g106080 | 22.961 | 331 | 177 | 12 | 47 | 343 | 333 | 619 | 2.48e-11 | 65.9 |
| MS.gene43279.t1 | MTR_7g095190 | 29.032 | 186 | 112 | 7 | 179 | 351 | 62 | 240 | 5.23e-11 | 63.5 |
| MS.gene43279.t1 | MTR_6g004040 | 24.569 | 232 | 149 | 9 | 169 | 396 | 5 | 214 | 8.03e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43279.t1 | AT5G50120 | 55.438 | 377 | 147 | 7 | 36 | 399 | 19 | 387 | 1.53e-143 | 414 |
| MS.gene43279.t1 | AT1G24130 | 55.882 | 374 | 151 | 8 | 33 | 398 | 45 | 412 | 2.05e-131 | 384 |
| MS.gene43279.t1 | AT1G24530 | 45.238 | 378 | 177 | 11 | 28 | 398 | 51 | 405 | 5.28e-100 | 304 |
| MS.gene43279.t1 | AT2G26490 | 40.294 | 340 | 178 | 8 | 59 | 394 | 98 | 416 | 7.61e-78 | 248 |
| MS.gene43279.t1 | AT3G50390 | 38.012 | 342 | 189 | 8 | 59 | 395 | 100 | 423 | 9.46e-75 | 240 |
| MS.gene43279.t1 | AT3G18950 | 39.650 | 343 | 182 | 8 | 59 | 395 | 140 | 463 | 2.17e-72 | 234 |
| MS.gene43279.t1 | AT4G34380 | 38.617 | 347 | 185 | 8 | 59 | 395 | 127 | 455 | 1.28e-69 | 228 |
| MS.gene43279.t1 | AT1G49450 | 37.921 | 356 | 190 | 9 | 52 | 395 | 129 | 465 | 2.30e-69 | 226 |
| MS.gene43279.t1 | AT3G51930 | 37.746 | 355 | 183 | 12 | 60 | 399 | 64 | 395 | 9.32e-69 | 223 |
| MS.gene43279.t1 | AT1G47610 | 37.536 | 349 | 179 | 12 | 59 | 395 | 26 | 347 | 2.28e-66 | 215 |
| MS.gene43279.t1 | AT3G49180 | 33.023 | 215 | 110 | 10 | 176 | 368 | 116 | 318 | 1.27e-13 | 72.4 |
| MS.gene43279.t1 | AT3G49660 | 22.350 | 349 | 171 | 11 | 95 | 394 | 15 | 312 | 7.80e-13 | 69.3 |
| MS.gene43279.t1 | AT5G49200 | 27.602 | 221 | 132 | 8 | 179 | 396 | 130 | 325 | 4.38e-12 | 67.8 |
| MS.gene43279.t1 | AT4G02730 | 33.099 | 142 | 77 | 5 | 256 | 395 | 31 | 156 | 8.37e-12 | 66.2 |
Find 69 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTTATATTCTGTTTCT+TGG | 0.253512 | 8.4:+20370208 | MS.gene43279:CDS |
| AGGATAAGACAATTCGAATT+TGG | 0.268980 | 8.4:+20370622 | MS.gene43279:CDS |
| AAGTTTGGACTGTGATATTA+AGG | 0.272095 | 8.4:+20370785 | MS.gene43279:CDS |
| ACAATAGTTAGGCACTTAAT+TGG | 0.277575 | 8.4:-20370711 | None:intergenic |
| GTTGAGGGTGAGAATGAATA+TGG | 0.282172 | 8.4:-20369885 | None:intergenic |
| ATGTTGGGAGTGTGGCTAAA+TGG | 0.285118 | 8.4:-20370062 | None:intergenic |
| TCAATATTGGTATCTGAAAA+AGG | 0.299182 | 8.4:+20370501 | MS.gene43279:CDS |
| ATATCCTCTTTAACACTTGT+AGG | 0.315862 | 8.4:+20369808 | MS.gene43279:CDS |
| AACCAAAGACTTCACGTGTT+TGG | 0.328930 | 8.4:+20370254 | MS.gene43279:CDS |
| TTCCAAACACGTGAAGTCTT+TGG | 0.336054 | 8.4:-20370256 | None:intergenic |
| TCTTATCTACAGTGGAAGTT+TGG | 0.340317 | 8.4:+20370770 | MS.gene43279:CDS |
| CTTGTTATATTCTGTTTCTT+GGG | 0.372180 | 8.4:+20370209 | MS.gene43279:CDS |
| AACACTAACACAATAGTATC+TGG | 0.378047 | 8.4:+20369916 | MS.gene43279:CDS |
| GTATTGTTGTTTGAGTGTTT+TGG | 0.382666 | 8.4:+20370674 | MS.gene43279:CDS |
| TTGAGATTCGTTGTTGATAT+TGG | 0.387479 | 8.4:-20370025 | None:intergenic |
| CACAAAGTCTATATTGTGTT+TGG | 0.388010 | 8.4:+20370566 | MS.gene43279:CDS |
| TTTGGCTGTGGTTTCCGATT+TGG | 0.391666 | 8.4:+20370584 | MS.gene43279:CDS |
| AAGAATTATGAAATTGTTGT+GGG | 0.404491 | 8.4:-20369747 | None:intergenic |
| AAAACCATGTTAATATTAGA+AGG | 0.405172 | 8.4:+20370118 | MS.gene43279:CDS |
| ACATTTGTTAGTTGATACTT+TGG | 0.417662 | 8.4:+20370401 | MS.gene43279:CDS |
| CAAGGTTCCATCTTTAGATA+AGG | 0.424143 | 8.4:-20370190 | None:intergenic |
| TGTTGGGAGTGTGGCTAAAT+GGG | 0.428968 | 8.4:-20370061 | None:intergenic |
| GTCTATATTGTGTTTGGCTG+TGG | 0.439005 | 8.4:+20370572 | MS.gene43279:CDS |
| AGTGATCAAGCACAATAGTT+AGG | 0.447101 | 8.4:-20370722 | None:intergenic |
| AGACTTCACGTGTTTGGAAT+CGG | 0.453279 | 8.4:+20370260 | MS.gene43279:CDS |
| AAGATAACAAAATCCGCGTT+TGG | 0.462988 | 8.4:+20369995 | MS.gene43279:CDS |
| AACACAATAGTATCTGGAAA+TGG | 0.466792 | 8.4:+20369922 | MS.gene43279:CDS |
| TGCATGTGATAGATCAATAT+TGG | 0.470368 | 8.4:+20370488 | MS.gene43279:CDS |
| GCAATCACAGTTTCTAATGA+TGG | 0.473911 | 8.4:+20370312 | MS.gene43279:CDS |
| GAAGAATTATGAAATTGTTG+TGG | 0.479398 | 8.4:-20369748 | None:intergenic |
| AATGGTAATTTGATAGTCAT+AGG | 0.480190 | 8.4:+20370528 | MS.gene43279:CDS |
| GTGAAACGGTCTATGAATGT+TGG | 0.481090 | 8.4:-20370078 | None:intergenic |
| ACTTTGGAGAAACACAGGTC+TGG | 0.494679 | 8.4:+20370417 | MS.gene43279:CDS |
| CCATGATGTGACTTCTGTGT+TGG | 0.496060 | 8.4:-20369854 | None:intergenic |
| TGGACTGTGATATTAAGGTT+TGG | 0.496672 | 8.4:+20370790 | MS.gene43279:CDS |
| TAGTGTTAATTGATTGTTGA+GGG | 0.498235 | 8.4:-20369900 | None:intergenic |
| TGAAACGGTCTATGAATGTT+GGG | 0.500439 | 8.4:-20370077 | None:intergenic |
| AGAACCACTGCACACCAAAT+CGG | 0.501162 | 8.4:-20370598 | None:intergenic |
| AAATATACCGTTTACAGAAG+AGG | 0.503801 | 8.4:-20370825 | None:intergenic |
| CTTTGGAGAAACACAGGTCT+GGG | 0.512071 | 8.4:+20370418 | MS.gene43279:CDS |
| TCTCTTGCCTTATCTAAAGA+TGG | 0.516196 | 8.4:+20370183 | MS.gene43279:CDS |
| TTCTTGGGACAGAACAATCA+AGG | 0.526842 | 8.4:+20370224 | MS.gene43279:CDS |
| CAGGTCTGGGATTAATGCAT+TGG | 0.528247 | 8.4:+20370431 | MS.gene43279:CDS |
| GTAGGAAAATTCCTTTACAC+TGG | 0.545108 | 8.4:+20369826 | MS.gene43279:CDS |
| GCATTGGCTCTTAACAGTGA+TGG | 0.550237 | 8.4:+20370447 | MS.gene43279:CDS |
| GTTATTAGAGTCGTTGCTGA+AGG | 0.556540 | 8.4:-20369647 | None:intergenic |
| ATAGTCATAGGTGCTCTTCG+TGG | 0.558858 | 8.4:+20370540 | MS.gene43279:CDS |
| CAGAGTTGTGAGGCATGTGA+AGG | 0.571298 | 8.4:-20369770 | None:intergenic |
| CCAACACAGAAGTCACATCA+TGG | 0.577575 | 8.4:+20369854 | MS.gene43279:CDS |
| CTTGTCTGAATGAACTACAA+TGG | 0.582865 | 8.4:-20369956 | None:intergenic |
| TTGATACTTTGGAGAAACAC+AGG | 0.587467 | 8.4:+20370412 | MS.gene43279:CDS |
| GGTGAGAATGAATATGGGAA+AGG | 0.601558 | 8.4:-20369879 | None:intergenic |
| TTGAGGGTGAGAATGAATAT+GGG | 0.604046 | 8.4:-20369884 | None:intergenic |
| TGTGGGTTTGAGTTGAGAGA+AGG | 0.611992 | 8.4:-20369730 | None:intergenic |
| TGTTGGATGAACCAGTGTAA+AGG | 0.614019 | 8.4:-20369837 | None:intergenic |
| TTAGTGTTAATTGATTGTTG+AGG | 0.615795 | 8.4:-20369901 | None:intergenic |
| TGTGCCTTCTAATATTAACA+TGG | 0.616075 | 8.4:-20370122 | None:intergenic |
| GTCTATGAATGTTGGGAGTG+TGG | 0.617369 | 8.4:-20370070 | None:intergenic |
| TTTGGTGTGCAGTGGTTCTG+AGG | 0.623985 | 8.4:+20370602 | MS.gene43279:CDS |
| AATGATGGATATGTTTACAC+CGG | 0.626851 | 8.4:+20370327 | MS.gene43279:CDS |
| AAGACAATTCGAATTTGGCG+AGG | 0.636015 | 8.4:+20370627 | MS.gene43279:CDS |
| CCAAGAAACAGAATATAACA+AGG | 0.647110 | 8.4:-20370208 | None:intergenic |
| GTTTCCGATTTGGTGTGCAG+TGG | 0.647994 | 8.4:+20370594 | MS.gene43279:CDS |
| GAGATGAGACTGTGTCAACA+TGG | 0.652437 | 8.4:-20370164 | None:intergenic |
| TGTAGAATTTCAGAGTTGTG+AGG | 0.653037 | 8.4:-20369780 | None:intergenic |
| ATAAGAAAAGATGCTTCAGA+CGG | 0.660091 | 8.4:-20370753 | None:intergenic |
| GGGACAGAACAATCAAGGTG+TGG | 0.682593 | 8.4:+20370229 | MS.gene43279:CDS |
| TTGTGAAGAAAGAGTACGTG+TGG | 0.685509 | 8.4:-20369689 | None:intergenic |
| TGAGAGAAGGAACTGATGCG+AGG | 0.688278 | 8.4:-20369717 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAACAGATAAAAAAATTA+AGG | + | chr8.4:20370350-20370369 | MS.gene43279:CDS | 15.0% |
| !! | AAAACCATGTTAATATTAGA+AGG | + | chr8.4:20370118-20370137 | MS.gene43279:CDS | 20.0% |
| !! | AAGAATTATGAAATTGTTGT+GGG | - | chr8.4:20369750-20369769 | None:intergenic | 20.0% |
| !! | CAGATAAAAAAATTAAGGTT+TGG | + | chr8.4:20370355-20370374 | MS.gene43279:CDS | 20.0% |
| !!! | AATTTTTTTATCTGTTGATC+CGG | - | chr8.4:20370349-20370368 | None:intergenic | 20.0% |
| !!! | CTAATATTAACATGGTTTTT+CGG | - | chr8.4:20370117-20370136 | None:intergenic | 20.0% |
| !!! | TAATATTAACATGGTTTTTC+GGG | - | chr8.4:20370116-20370135 | None:intergenic | 20.0% |
| ! | AAGGTTTGGAAGAAAAATAA+AGG | + | chr8.4:20370369-20370388 | MS.gene43279:CDS | 25.0% |
| ! | GAAGAATTATGAAATTGTTG+TGG | - | chr8.4:20369751-20369770 | None:intergenic | 25.0% |
| ! | TAGTGTTAATTGATTGTTGA+GGG | - | chr8.4:20369903-20369922 | None:intergenic | 25.0% |
| ! | TCAATATTGGTATCTGAAAA+AGG | + | chr8.4:20370501-20370520 | MS.gene43279:CDS | 25.0% |
| ! | TTAGTGTTAATTGATTGTTG+AGG | - | chr8.4:20369904-20369923 | None:intergenic | 25.0% |
| !! | AATGGTAATTTGATAGTCAT+AGG | + | chr8.4:20370528-20370547 | MS.gene43279:CDS | 25.0% |
| !! | ACATTTGTTAGTTGATACTT+TGG | + | chr8.4:20370401-20370420 | MS.gene43279:CDS | 25.0% |
| !! | CTTGTTATATTCTGTTTCTT+GGG | + | chr8.4:20370209-20370228 | MS.gene43279:CDS | 25.0% |
| !!! | GTGTGGTAATTAACTTTTTT+TGG | - | chr8.4:20369675-20369694 | None:intergenic | 25.0% |
| AACACAATAGTATCTGGAAA+TGG | + | chr8.4:20369922-20369941 | MS.gene43279:CDS | 30.0% | |
| AACACTAACACAATAGTATC+TGG | + | chr8.4:20369916-20369935 | MS.gene43279:CDS | 30.0% | |
| AAGTTTGGACTGTGATATTA+AGG | + | chr8.4:20370785-20370804 | MS.gene43279:CDS | 30.0% | |
| ACAATAGTTAGGCACTTAAT+TGG | - | chr8.4:20370714-20370733 | None:intergenic | 30.0% | |
| AGGATAAGACAATTCGAATT+TGG | + | chr8.4:20370622-20370641 | MS.gene43279:CDS | 30.0% | |
| ATAAGAAAAGATGCTTCAGA+CGG | - | chr8.4:20370756-20370775 | None:intergenic | 30.0% | |
| ATATCCTCTTTAACACTTGT+AGG | + | chr8.4:20369808-20369827 | MS.gene43279:CDS | 30.0% | |
| CACAAAGTCTATATTGTGTT+TGG | + | chr8.4:20370566-20370585 | MS.gene43279:CDS | 30.0% | |
| CCAAGAAACAGAATATAACA+AGG | - | chr8.4:20370211-20370230 | None:intergenic | 30.0% | |
| GTATCTGAAAAAGGTGAAAA+TGG | + | chr8.4:20370510-20370529 | MS.gene43279:CDS | 30.0% | |
| TGCATGTGATAGATCAATAT+TGG | + | chr8.4:20370488-20370507 | MS.gene43279:CDS | 30.0% | |
| TGTGCCTTCTAATATTAACA+TGG | - | chr8.4:20370125-20370144 | None:intergenic | 30.0% | |
| TTGAGATTCGTTGTTGATAT+TGG | - | chr8.4:20370028-20370047 | None:intergenic | 30.0% | |
| ! | CCTTGTTATATTCTGTTTCT+TGG | + | chr8.4:20370208-20370227 | MS.gene43279:CDS | 30.0% |
| ! | TTTTCCTACAAGTGTTAAAG+AGG | - | chr8.4:20369815-20369834 | None:intergenic | 30.0% |
| !! | AATGATGGATATGTTTACAC+CGG | + | chr8.4:20370327-20370346 | MS.gene43279:CDS | 30.0% |
| !!! | GTATTGTTGTTTGAGTGTTT+TGG | + | chr8.4:20370674-20370693 | MS.gene43279:CDS | 30.0% |
| AAGATAACAAAATCCGCGTT+TGG | + | chr8.4:20369995-20370014 | MS.gene43279:CDS | 35.0% | |
| AAGGCACAAAAAATGCACAT+GGG | + | chr8.4:20370137-20370156 | MS.gene43279:CDS | 35.0% | |
| AGTGATCAAGCACAATAGTT+AGG | - | chr8.4:20370725-20370744 | None:intergenic | 35.0% | |
| CAAGGTTCCATCTTTAGATA+AGG | - | chr8.4:20370193-20370212 | None:intergenic | 35.0% | |
| CTTGTCTGAATGAACTACAA+TGG | - | chr8.4:20369959-20369978 | None:intergenic | 35.0% | |
| GCAATCACAGTTTCTAATGA+TGG | + | chr8.4:20370312-20370331 | MS.gene43279:CDS | 35.0% | |
| GTAGGAAAATTCCTTTACAC+TGG | + | chr8.4:20369826-20369845 | MS.gene43279:CDS | 35.0% | |
| TCTCTTGCCTTATCTAAAGA+TGG | + | chr8.4:20370183-20370202 | MS.gene43279:CDS | 35.0% | |
| TCTTATCTACAGTGGAAGTT+TGG | + | chr8.4:20370770-20370789 | MS.gene43279:CDS | 35.0% | |
| TGAAACGGTCTATGAATGTT+GGG | - | chr8.4:20370080-20370099 | None:intergenic | 35.0% | |
| TGGACTGTGATATTAAGGTT+TGG | + | chr8.4:20370790-20370809 | MS.gene43279:CDS | 35.0% | |
| TGTAGAATTTCAGAGTTGTG+AGG | - | chr8.4:20369783-20369802 | None:intergenic | 35.0% | |
| TTGAGGGTGAGAATGAATAT+GGG | - | chr8.4:20369887-20369906 | None:intergenic | 35.0% | |
| ! | GCATCTTTTCTTATCTACAG+TGG | + | chr8.4:20370762-20370781 | MS.gene43279:CDS | 35.0% |
| ! | TTGATACTTTGGAGAAACAC+AGG | + | chr8.4:20370412-20370431 | MS.gene43279:CDS | 35.0% |
| !! | AAACGCGGATTTTGTTATCT+TGG | - | chr8.4:20369996-20370015 | None:intergenic | 35.0% |
| !! | GATGGTTCTGTTTTGTATTC+TGG | + | chr8.4:20370465-20370484 | MS.gene43279:CDS | 35.0% |
| !! | TATTGGTGATTTTCCAAACG+CGG | - | chr8.4:20370011-20370030 | None:intergenic | 35.0% |
| !! | TGTTGTTTGAGTGTTTTGGA+AGG | + | chr8.4:20370678-20370697 | MS.gene43279:CDS | 35.0% |
| !!! | GTTGTTTGAGTGTTTTGGAA+GGG | + | chr8.4:20370679-20370698 | MS.gene43279:CDS | 35.0% |
| AACCAAAGACTTCACGTGTT+TGG | + | chr8.4:20370254-20370273 | MS.gene43279:CDS | 40.0% | |
| AAGACAATTCGAATTTGGCG+AGG | + | chr8.4:20370627-20370646 | MS.gene43279:CDS | 40.0% | |
| GGTGAGAATGAATATGGGAA+AGG | - | chr8.4:20369882-20369901 | None:intergenic | 40.0% | |
| GTCTATATTGTGTTTGGCTG+TGG | + | chr8.4:20370572-20370591 | MS.gene43279:CDS | 40.0% | |
| GTGAAACGGTCTATGAATGT+TGG | - | chr8.4:20370081-20370100 | None:intergenic | 40.0% | |
| GTTATTAGAGTCGTTGCTGA+AGG | - | chr8.4:20369650-20369669 | None:intergenic | 40.0% | |
| GTTGAGGGTGAGAATGAATA+TGG | - | chr8.4:20369888-20369907 | None:intergenic | 40.0% | |
| TGTTGGATGAACCAGTGTAA+AGG | - | chr8.4:20369840-20369859 | None:intergenic | 40.0% | |
| TTCCAAACACGTGAAGTCTT+TGG | - | chr8.4:20370259-20370278 | None:intergenic | 40.0% | |
| TTCTTGGGACAGAACAATCA+AGG | + | chr8.4:20370224-20370243 | MS.gene43279:CDS | 40.0% | |
| ! | AGACTTCACGTGTTTGGAAT+CGG | + | chr8.4:20370260-20370279 | MS.gene43279:CDS | 40.0% |
| ! | GAAGGCACAAAAAATGCACA+TGG | + | chr8.4:20370136-20370155 | MS.gene43279:CDS | 40.0% |
| ! | GGATGAGGATTTTCGTGAAA+CGG | - | chr8.4:20370095-20370114 | None:intergenic | 40.0% |
| ! | TTGTGAAGAAAGAGTACGTG+TGG | - | chr8.4:20369692-20369711 | None:intergenic | 40.0% |
| !!! | AGTGTTTTGGAAGGGCATAA+AGG | + | chr8.4:20370687-20370706 | MS.gene43279:CDS | 40.0% |
| !!! | TAACATGGTTTTTCGGGATG+AGG | - | chr8.4:20370110-20370129 | None:intergenic | 40.0% |
| AGAACCACTGCACACCAAAT+CGG | - | chr8.4:20370601-20370620 | None:intergenic | 45.0% | |
| ATAGTCATAGGTGCTCTTCG+TGG | + | chr8.4:20370540-20370559 | MS.gene43279:CDS | 45.0% | |
| CCAACACAGAAGTCACATCA+TGG | + | chr8.4:20369854-20369873 | MS.gene43279:CDS | 45.0% | |
| CCATGATGTGACTTCTGTGT+TGG | - | chr8.4:20369857-20369876 | None:intergenic | 45.0% | |
| GAGATGAGACTGTGTCAACA+TGG | - | chr8.4:20370167-20370186 | None:intergenic | 45.0% | |
| GTCTATGAATGTTGGGAGTG+TGG | - | chr8.4:20370073-20370092 | None:intergenic | 45.0% | |
| TTTGGCTGTGGTTTCCGATT+TGG | + | chr8.4:20370584-20370603 | MS.gene43279:CDS | 45.0% | |
| ! | ACTTTGGAGAAACACAGGTC+TGG | + | chr8.4:20370417-20370436 | MS.gene43279:CDS | 45.0% |
| ! | ATGTTGGGAGTGTGGCTAAA+TGG | - | chr8.4:20370065-20370084 | None:intergenic | 45.0% |
| ! | CAGGTCTGGGATTAATGCAT+TGG | + | chr8.4:20370431-20370450 | MS.gene43279:CDS | 45.0% |
| ! | CTTTGGAGAAACACAGGTCT+GGG | + | chr8.4:20370418-20370437 | MS.gene43279:CDS | 45.0% |
| ! | TGTTGGGAGTGTGGCTAAAT+GGG | - | chr8.4:20370064-20370083 | None:intergenic | 45.0% |
| !! | GCATTGGCTCTTAACAGTGA+TGG | + | chr8.4:20370447-20370466 | MS.gene43279:CDS | 45.0% |
| !! | TGTGGGTTTGAGTTGAGAGA+AGG | - | chr8.4:20369733-20369752 | None:intergenic | 45.0% |
| CAGAGTTGTGAGGCATGTGA+AGG | - | chr8.4:20369773-20369792 | None:intergenic | 50.0% | |
| GGGACAGAACAATCAAGGTG+TGG | + | chr8.4:20370229-20370248 | MS.gene43279:CDS | 50.0% | |
| TGAGAGAAGGAACTGATGCG+AGG | - | chr8.4:20369720-20369739 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGCAGTGGTTCTG+AGG | + | chr8.4:20370602-20370621 | MS.gene43279:CDS | 50.0% |
| !! | GTTTCCGATTTGGTGTGCAG+TGG | + | chr8.4:20370594-20370613 | MS.gene43279:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20369631 | 20370836 | 20369631 | ID=MS.gene43279 |
| chr8.4 | mRNA | 20369631 | 20370836 | 20369631 | ID=MS.gene43279.t1;Parent=MS.gene43279 |
| chr8.4 | exon | 20369631 | 20370836 | 20369631 | ID=MS.gene43279.t1.exon1;Parent=MS.gene43279.t1 |
| chr8.4 | CDS | 20369631 | 20370836 | 20369631 | ID=cds.MS.gene43279.t1;Parent=MS.gene43279.t1 |
| Gene Sequence |
| Protein sequence |
