Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43288.t1 | XP_003608956.1 | 95.6 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 5.40E-102 | 380.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43288.t1 | Q94JX5 | 69.1 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 2.3e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43288.t1 | G7JNV0 | 95.6 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 3.9e-102 | 380.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43288.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene43288 | 0.821759 | 3.40E-53 | -1.69E-46 |
| MS.gene058111 | MS.gene43288 | 0.811706 | 6.12E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene43288 | 0.816931 | 4.29E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene43288 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene43288 | 0.813872 | 2.05E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene43288 | -0.803444 | 3.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43288.t1 | MTR_4g106800 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 2.98e-130 | 362 |
| MS.gene43288.t1 | MTR_1g017950 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 4.07e-89 | 259 |
| MS.gene43288.t1 | MTR_3g070050 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 5.56e-69 | 208 |
| MS.gene43288.t1 | MTR_8g097300 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 6.65e-62 | 191 |
| MS.gene43288.t1 | MTR_8g097300 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 7.60e-20 | 83.2 |
| MS.gene43288.t1 | MTR_8g031490 | 50.838 | 179 | 75 | 2 | 3 | 177 | 2 | 171 | 1.25e-60 | 187 |
| MS.gene43288.t1 | MTR_7g076720 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 5.18e-58 | 181 |
| MS.gene43288.t1 | MTR_7g076720 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 2.46e-15 | 71.2 |
| MS.gene43288.t1 | MTR_7g076720 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 3.68e-15 | 70.9 |
| MS.gene43288.t1 | MTR_3g070050 | 49.286 | 140 | 66 | 3 | 45 | 181 | 2 | 139 | 1.10e-44 | 145 |
| MS.gene43288.t1 | MTR_3g070050 | 44.944 | 89 | 48 | 1 | 4 | 92 | 61 | 148 | 6.35e-20 | 81.6 |
| MS.gene43288.t1 | MTR_1g106100 | 47.748 | 111 | 51 | 2 | 60 | 168 | 20 | 125 | 4.14e-32 | 113 |
| MS.gene43288.t1 | MTR_3g070033 | 50.847 | 59 | 29 | 0 | 123 | 181 | 6 | 64 | 1.73e-18 | 75.9 |
| MS.gene43288.t1 | MTR_3g070033 | 43.478 | 69 | 38 | 1 | 24 | 92 | 6 | 73 | 1.49e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43288.t1 | AT1G10200 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.64e-90 | 263 |
| MS.gene43288.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene43288.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene43288.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene43288.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene43288.t1 | AT2G39900 | 53.631 | 179 | 83 | 0 | 3 | 181 | 2 | 180 | 7.68e-70 | 211 |
| MS.gene43288.t1 | AT3G61230 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 5.89e-67 | 204 |
| MS.gene43288.t1 | AT3G61230 | 40.659 | 91 | 54 | 0 | 4 | 94 | 100 | 190 | 1.22e-17 | 77.4 |
| MS.gene43288.t1 | AT3G61230 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 5.35e-16 | 73.2 |
| MS.gene43288.t1 | AT3G55770 | 47.664 | 214 | 75 | 3 | 3 | 181 | 2 | 213 | 1.68e-63 | 196 |
| MS.gene43288.t1 | AT2G45800 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 5.66e-63 | 194 |
| MS.gene43288.t1 | AT2G45800 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 9.08e-18 | 78.2 |
| MS.gene43288.t1 | AT2G45800 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.10e-16 | 75.1 |
| MS.gene43288.t1 | AT1G01780 | 52.047 | 171 | 77 | 2 | 3 | 173 | 2 | 167 | 6.37e-63 | 193 |
| MS.gene43288.t1 | AT1G01780 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.88e-17 | 76.3 |
| MS.gene43288.t1 | AT1G10200 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.44e-62 | 190 |
| MS.gene43288.t1 | AT1G10200 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.76e-16 | 72.4 |
| MS.gene43288.t1 | AT3G55770 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.17e-43 | 142 |
| MS.gene43288.t1 | AT3G55770 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.84e-18 | 77.4 |
| MS.gene43288.t1 | AT2G45800 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.40e-42 | 141 |
| MS.gene43288.t1 | AT2G45800 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.30e-18 | 78.6 |
| MS.gene43288.t1 | AT3G55770 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.39e-40 | 134 |
| MS.gene43288.t1 | AT3G55770 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 1.79e-18 | 77.8 |
Find 31 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | 8.4:+20487414 | MS.gene43288:CDS |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | 8.4:-20487407 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8.4:+20486055 | MS.gene43288:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8.4:+20484215 | None:intergenic |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | 8.4:+20484258 | MS.gene43288:CDS |
| TTGAAACCTTGTTATATGCT+TGG | 0.394784 | 8.4:-20486341 | None:intergenic |
| CATGGTGATGTCTACAATAA+AGG | 0.396225 | 8.4:-20487353 | None:intergenic |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8.4:-20487324 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | 8.4:+20487398 | MS.gene43288:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8.4:+20487274 | MS.gene43288:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | 8.4:+20486230 | MS.gene43288:CDS |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8.4:+20486047 | MS.gene43288:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | 8.4:+20486407 | MS.gene43288:CDS |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8.4:-20486038 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8.4:-20487278 | None:intergenic |
| TGCTCAGATCTTCAAACAGA+AGG | 0.527238 | 8.4:+20487374 | MS.gene43288:CDS |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8.4:+20484325 | MS.gene43288:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | 8.4:-20484334 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8.4:+20487285 | MS.gene43288:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8.4:+20484326 | MS.gene43288:CDS |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | 8.4:+20487415 | MS.gene43288:CDS |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | 8.4:-20484337 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | 8.4:+20484259 | MS.gene43288:CDS |
| TCTGTTTGAAGATCTGAGCA+TGG | 0.621276 | 8.4:-20487371 | None:intergenic |
| GCTCAGATCTTCAAACAGAA+GGG | 0.622874 | 8.4:+20487375 | MS.gene43288:CDS |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8.4:+20487317 | MS.gene43288:CDS |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | 8.4:+20484337 | MS.gene43288:CDS |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8.4:+20487288 | MS.gene43288:CDS |
| ACAGGTCCAAGCATATAACA+AGG | 0.699921 | 8.4:+20486335 | MS.gene43288:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | 8.4:+20484262 | MS.gene43288:CDS |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | 8.4:-20484313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAATAATGTATTT+AGG | - | chr8.4:20485454-20485473 | None:intergenic | 10.0% |
| !! | AGTTAGTATTTAATTAATTA+AGG | + | chr8.4:20486877-20486896 | MS.gene43288:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | + | chr8.4:20485788-20485807 | MS.gene43288:intron | 10.0% |
| !! | GTTAGTATTTAATTAATTAA+GGG | + | chr8.4:20486878-20486897 | MS.gene43288:intron | 10.0% |
| !!! | TAATTCTTTACTTTTTATTT+TGG | + | chr8.4:20484494-20484513 | MS.gene43288:intron | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | + | chr8.4:20485659-20485678 | MS.gene43288:intron | 10.0% |
| !! | AAAAGTTCTATAACAATATT+TGG | - | chr8.4:20485696-20485715 | None:intergenic | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | - | chr8.4:20486700-20486719 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAAAGATGAGA+AGG | - | chr8.4:20486609-20486628 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | + | chr8.4:20486546-20486565 | MS.gene43288:intron | 15.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | + | chr8.4:20484446-20484465 | MS.gene43288:intron | 15.0% |
| !! | TTTGAAAAAATGACATAATT+CGG | + | chr8.4:20487069-20487088 | MS.gene43288:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | + | chr8.4:20485176-20485195 | MS.gene43288:intron | 15.0% |
| !!! | ATGGTAACAATATTTTATAA+AGG | - | chr8.4:20484912-20484931 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | - | chr8.4:20485333-20485352 | None:intergenic | 15.0% |
| !!! | TGGTAACAATATTTTATAAA+GGG | - | chr8.4:20484911-20484930 | None:intergenic | 15.0% |
| !!! | TTGTTACTTAGATATAATAT+GGG | - | chr8.4:20486931-20486950 | None:intergenic | 15.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | - | chr8.4:20484475-20484494 | None:intergenic | 20.0% |
| !! | AATTAAACTGCAATGTAATT+GGG | - | chr8.4:20484720-20484739 | None:intergenic | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | - | chr8.4:20486182-20486201 | None:intergenic | 20.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | - | chr8.4:20484370-20484389 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | - | chr8.4:20484476-20484495 | None:intergenic | 20.0% |
| !! | TATAAGTGTTATATATGTGT+CGG | - | chr8.4:20485503-20485522 | None:intergenic | 20.0% |
| !!! | AATACATATACCTTTTCAAT+TGG | - | chr8.4:20486420-20486439 | None:intergenic | 20.0% |
| !!! | ATACATATACCTTTTCAATT+GGG | - | chr8.4:20486419-20486438 | None:intergenic | 20.0% |
| !!! | CTTGTTACTTAGATATAATA+TGG | - | chr8.4:20486932-20486951 | None:intergenic | 20.0% |
| !!! | GGTAACAATATTTTATAAAG+GGG | - | chr8.4:20484910-20484929 | None:intergenic | 20.0% |
| !!! | TACTTTTTATTTTGGATGAA+TGG | + | chr8.4:20484502-20484521 | MS.gene43288:intron | 20.0% |
| !!! | TCCTATGTTTTTTACATTAA+CGG | + | chr8.4:20485819-20485838 | MS.gene43288:intron | 20.0% |
| ! | AAAAATTGAACCGAATTGAA+TGG | + | chr8.4:20484647-20484666 | MS.gene43288:intron | 25.0% |
| ! | AAATAAAGATGAGAAGGATA+AGG | - | chr8.4:20486603-20486622 | None:intergenic | 25.0% |
| ! | ACCGTTAATGTAAAAAACAT+AGG | - | chr8.4:20485823-20485842 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | + | chr8.4:20487215-20487234 | MS.gene43288:intron | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | + | chr8.4:20486523-20486542 | MS.gene43288:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | - | chr8.4:20487215-20487234 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | + | chr8.4:20484259-20484278 | MS.gene43288:CDS | 25.0% |
| ! | ATTGCAGTTTAATTGAACTA+AGG | + | chr8.4:20484726-20484745 | MS.gene43288:intron | 25.0% |
| ! | CAATTAAACTGCAATGTAAT+TGG | - | chr8.4:20484721-20484740 | None:intergenic | 25.0% |
| ! | CTAGTAACTAATAATGTAAC+AGG | + | chr8.4:20486317-20486336 | MS.gene43288:intron | 25.0% |
| ! | GAAATATACATAAAATGAGC+TGG | + | chr8.4:20486806-20486825 | MS.gene43288:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | + | chr8.4:20487216-20487235 | MS.gene43288:intron | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | + | chr8.4:20486189-20486208 | MS.gene43288:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | + | chr8.4:20487398-20487417 | MS.gene43288:CDS | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | - | chr8.4:20486528-20486547 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | - | chr8.4:20486865-20486884 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | - | chr8.4:20486637-20486656 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | - | chr8.4:20487056-20487075 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | + | chr8.4:20485999-20486018 | MS.gene43288:CDS | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | - | chr8.4:20486041-20486060 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | - | chr8.4:20486482-20486501 | None:intergenic | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | - | chr8.4:20486481-20486500 | None:intergenic | 25.0% |
| AAATCAATCGACAAACTAAC+AGG | - | chr8.4:20484694-20484713 | None:intergenic | 30.0% | |
| AACACAAGTTGTCCAATATA+TGG | + | chr8.4:20486975-20486994 | MS.gene43288:intron | 30.0% | |
| ACATGTCATACGAATGTTAT+AGG | - | chr8.4:20485418-20485437 | None:intergenic | 30.0% | |
| ACCGAATTGAATGGTTTAAT+CGG | + | chr8.4:20484656-20484675 | MS.gene43288:intron | 30.0% | |
| ACCGATTAAACCATTCAATT+CGG | - | chr8.4:20484660-20484679 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | - | chr8.4:20486297-20486316 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | - | chr8.4:20486299-20486318 | None:intergenic | 30.0% | |
| ATATATTGGACAACTTGTGT+TGG | - | chr8.4:20486976-20486995 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | + | chr8.4:20486837-20486856 | MS.gene43288:intron | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | + | chr8.4:20484258-20484277 | MS.gene43288:CDS | 30.0% | |
| CCAAAATAGTGGTTATAAGT+GGG | - | chr8.4:20485135-20485154 | None:intergenic | 30.0% | |
| CTTGTTCAACCTTATCAAAT+TGG | - | chr8.4:20487410-20487429 | None:intergenic | 30.0% | |
| GAACAATCCCAATGAATATA+TGG | - | chr8.4:20487226-20487245 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | - | chr8.4:20486298-20486317 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | - | chr8.4:20486728-20486747 | None:intergenic | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | + | chr8.4:20485606-20485625 | MS.gene43288:intron | 30.0% | |
| TTAAGCAATAACCATGTAGT+AGG | - | chr8.4:20486109-20486128 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | + | chr8.4:20485605-20485624 | MS.gene43288:intron | 30.0% | |
| TTTATAAAGGGGATAAGAGA+TGG | - | chr8.4:20484899-20484918 | None:intergenic | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | + | chr8.4:20484394-20484413 | MS.gene43288:intron | 30.0% | |
| TTTGCACATCTTTACTCTTT+AGG | + | chr8.4:20485028-20485047 | MS.gene43288:intron | 30.0% | |
| ! | CTTCATATCTGGAATATGAT+AGG | + | chr8.4:20487167-20487186 | MS.gene43288:intron | 30.0% |
| ! | GAGTAACTATTGTTCTTTTG+AGG | + | chr8.4:20485998-20486017 | MS.gene43288:CDS | 30.0% |
| ! | TCAGTATATTTTCAGAACTG+AGG | + | chr8.4:20485300-20485319 | MS.gene43288:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | - | chr8.4:20486500-20486519 | None:intergenic | 30.0% |
| ! | TTGAAACCTTGTTATATGCT+TGG | - | chr8.4:20486344-20486363 | None:intergenic | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | + | chr8.4:20486071-20486090 | MS.gene43288:CDS | 30.0% |
| !! | TCAGTTCTGAAAATATACTG+AGG | - | chr8.4:20485301-20485320 | None:intergenic | 30.0% |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | + | chr8.4:20486354-20486373 | MS.gene43288:CDS | 30.0% |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | + | chr8.4:20487233-20487252 | MS.gene43288:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | + | chr8.4:20486492-20486511 | MS.gene43288:intron | 30.0% |
| AAAAATTTGCAGGTGCCTAA+TGG | - | chr8.4:20486855-20486874 | None:intergenic | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | + | chr8.4:20486407-20486426 | MS.gene43288:CDS | 35.0% | |
| AATCAGTCCATCAAACTATG+TGG | + | chr8.4:20487317-20487336 | MS.gene43288:CDS | 35.0% | |
| ACATCTTTACTCTTTAGGCA+TGG | + | chr8.4:20485033-20485052 | MS.gene43288:intron | 35.0% | |
| AGAAAGTTGTCTCTTACGAA+CGG | - | chr8.4:20485892-20485911 | None:intergenic | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | + | chr8.4:20486230-20486249 | MS.gene43288:CDS | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | - | chr8.4:20486677-20486696 | None:intergenic | 35.0% | |
| ATACTTTAGACTTCAGTGCA+TGG | + | chr8.4:20484533-20484552 | MS.gene43288:intron | 35.0% | |
| ATTGAACTAAGGTTGAACTG+CGG | + | chr8.4:20484737-20484756 | MS.gene43288:intron | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | + | chr8.4:20485354-20485373 | MS.gene43288:intron | 35.0% | |
| GAATAATAGCTCCTACTACA+TGG | + | chr8.4:20486095-20486114 | MS.gene43288:intron | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | - | chr8.4:20485146-20485165 | None:intergenic | 35.0% | |
| GCATAAGGAAAAGAGGATTA+AGG | - | chr8.4:20485967-20485986 | None:intergenic | 35.0% | |
| GCCAAAATAGTGGTTATAAG+TGG | - | chr8.4:20485136-20485155 | None:intergenic | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | + | chr8.4:20486375-20486394 | MS.gene43288:CDS | 35.0% | |
| GTAGAGAACAAGAAAATGCA+TGG | - | chr8.4:20485004-20485023 | None:intergenic | 35.0% | |
| GTTAAGCATTCTTTGCATGA+TGG | - | chr8.4:20484931-20484950 | None:intergenic | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | + | chr8.4:20485474-20485493 | MS.gene43288:intron | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | + | chr8.4:20484262-20484281 | MS.gene43288:CDS | 35.0% | |
| TTGTTGAAAACGACATCTAG+AGG | - | chr8.4:20484960-20484979 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | + | chr8.4:20485968-20485987 | MS.gene43288:intron | 35.0% |
| ! | ACTTTTGAATCTACTGTGTG+TGG | - | chr8.4:20485575-20485594 | None:intergenic | 35.0% |
| ! | CATGGTGATGTCTACAATAA+AGG | - | chr8.4:20487356-20487375 | None:intergenic | 35.0% |
| ! | CCCACTTATAACCACTATTT+TGG | + | chr8.4:20485132-20485151 | MS.gene43288:intron | 35.0% |
| ! | GACGGATTTGAACCATATAT+TGG | - | chr8.4:20486990-20487009 | None:intergenic | 35.0% |
| ! | TACGAATGTTATAGGAGTGT+CGG | - | chr8.4:20485410-20485429 | None:intergenic | 35.0% |
| ! | TCGACAAACTAACAGGTTTT+TGG | - | chr8.4:20484687-20484706 | None:intergenic | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | + | chr8.4:20486047-20486066 | MS.gene43288:CDS | 35.0% |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | + | chr8.4:20487246-20487265 | MS.gene43288:intron | 35.0% |
| ACAGGTCCAAGCATATAACA+AGG | + | chr8.4:20486335-20486354 | MS.gene43288:intron | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | + | chr8.4:20487156-20487175 | MS.gene43288:intron | 40.0% | |
| GCTCAGATCTTCAAACAGAA+GGG | + | chr8.4:20487375-20487394 | MS.gene43288:CDS | 40.0% | |
| GTTATATATGTGTCGGACAC+CGG | - | chr8.4:20485496-20485515 | None:intergenic | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | - | chr8.4:20487154-20487173 | None:intergenic | 40.0% | |
| TCAAATCCGTCTGAAAAGCA+CGG | + | chr8.4:20486999-20487018 | MS.gene43288:intron | 40.0% | |
| TCATGTGCCACATAGTTTGA+TGG | - | chr8.4:20487327-20487346 | None:intergenic | 40.0% | |
| TCTCCGACTCATGATTCAAT+CGG | - | chr8.4:20484865-20484884 | None:intergenic | 40.0% | |
| TCTGTTTGAAGATCTGAGCA+TGG | - | chr8.4:20487374-20487393 | None:intergenic | 40.0% | |
| TGACCGATTGAATCATGAGT+CGG | + | chr8.4:20484859-20484878 | MS.gene43288:intron | 40.0% | |
| TGCTCAGATCTTCAAACAGA+AGG | + | chr8.4:20487374-20487393 | MS.gene43288:CDS | 40.0% | |
| TGGGAGTAACATTCACTCAT+GGG | - | chr8.4:20485116-20485135 | None:intergenic | 40.0% | |
| TGTTGATCAACGAAGGGTTA+TGG | + | chr8.4:20485612-20485631 | MS.gene43288:intron | 40.0% | |
| ! | ATCTAGAATTAGGTGTGTCG+CGG | + | chr8.4:20485381-20485400 | MS.gene43288:intron | 40.0% |
| ! | CTTACCATAAGACTTGCTTC+AGG | + | chr8.4:20487274-20487293 | MS.gene43288:CDS | 40.0% |
| !! | CTTTAAGATGACTGGCAGTT+TGG | + | chr8.4:20486055-20486074 | MS.gene43288:CDS | 40.0% |
| GCACCAAGCATAAGGAAAAG+AGG | - | chr8.4:20485974-20485993 | None:intergenic | 45.0% | |
| GTGGGAGTAACATTCACTCA+TGG | - | chr8.4:20485117-20485136 | None:intergenic | 45.0% | |
| GTTGAACTGCGGTATGTAGT+TGG | + | chr8.4:20484748-20484767 | MS.gene43288:intron | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | - | chr8.4:20487281-20487300 | None:intergenic | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | + | chr8.4:20484326-20484345 | MS.gene43288:CDS | 45.0% | |
| ! | ACTTGTGTTGGTATGAGCTG+TGG | - | chr8.4:20486964-20486983 | None:intergenic | 45.0% |
| ! | GCACGGACACATCTAGAATT+AGG | + | chr8.4:20485371-20485390 | MS.gene43288:intron | 45.0% |
| ACTCAGCTGCACCAAGCATA+AGG | - | chr8.4:20485982-20486001 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | + | chr8.4:20487285-20487304 | MS.gene43288:CDS | 50.0% | |
| ATTCGTGTCAGTGTCGTGTC+AGG | + | chr8.4:20485851-20485870 | MS.gene43288:intron | 50.0% | |
| CTTCAGATGCCACCATTGCA+AGG | + | chr8.4:20484325-20484344 | MS.gene43288:CDS | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | - | chr8.4:20487148-20487167 | None:intergenic | 50.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | - | chr8.4:20484316-20484335 | None:intergenic | 50.0% |
| ! | TATTATCCGTGTCGGCGTGT+CGG | - | chr8.4:20487048-20487067 | None:intergenic | 50.0% |
| CCTTGAGTGTGCCCTTGCAA+TGG | - | chr8.4:20484340-20484359 | None:intergenic | 55.0% | |
| CGGTGTCTATGTCGTGTGTC+CGG | - | chr8.4:20487028-20487047 | None:intergenic | 55.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | - | chr8.4:20484337-20484356 | None:intergenic | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | + | chr8.4:20487288-20487307 | MS.gene43288:CDS | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | + | chr8.4:20484337-20484356 | MS.gene43288:CDS | 55.0% |
| ! | CGGTGTCCGTGCTTTTCAGA+CGG | - | chr8.4:20487008-20487027 | None:intergenic | 55.0% |
| ! | CGTCTGAAAAGCACGGACAC+CGG | + | chr8.4:20487006-20487025 | MS.gene43288:intron | 55.0% |
| ACAGCGACGTGTGTCCGACA+CGG | + | chr8.4:20487115-20487134 | MS.gene43288:intron | 60.0% | |
| GATTAGGCGTGTCCCCGTGT+CGG | - | chr8.4:20487132-20487151 | None:intergenic | 60.0% | |
| TAGACACCGACACGCCGACA+CGG | + | chr8.4:20487039-20487058 | MS.gene43288:intron | 60.0% | |
| ACGGGGACACGCCTAATCCG+AGG | + | chr8.4:20487134-20487153 | MS.gene43288:intron | 65.0% | |
| AGCGACGTGTGTCCGACACG+GGG | + | chr8.4:20487117-20487136 | MS.gene43288:intron | 65.0% | |
| CAGCGACGTGTGTCCGACAC+GGG | + | chr8.4:20487116-20487135 | MS.gene43288:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20484221 | 20487434 | 20484221 | ID=MS.gene43288 |
| chr8.4 | mRNA | 20484221 | 20487434 | 20484221 | ID=MS.gene43288.t1;Parent=MS.gene43288 |
| chr8.4 | exon | 20484221 | 20484358 | 20484221 | ID=MS.gene43288.t1.exon1;Parent=MS.gene43288.t1 |
| chr8.4 | CDS | 20484221 | 20484358 | 20484221 | ID=cds.MS.gene43288.t1;Parent=MS.gene43288.t1 |
| chr8.4 | exon | 20485996 | 20486092 | 20485996 | ID=MS.gene43288.t1.exon2;Parent=MS.gene43288.t1 |
| chr8.4 | CDS | 20485996 | 20486092 | 20485996 | ID=cds.MS.gene43288.t1;Parent=MS.gene43288.t1 |
| chr8.4 | exon | 20486211 | 20486251 | 20486211 | ID=MS.gene43288.t1.exon3;Parent=MS.gene43288.t1 |
| chr8.4 | CDS | 20486211 | 20486251 | 20486211 | ID=cds.MS.gene43288.t1;Parent=MS.gene43288.t1 |
| chr8.4 | exon | 20486339 | 20486428 | 20486339 | ID=MS.gene43288.t1.exon4;Parent=MS.gene43288.t1 |
| chr8.4 | CDS | 20486339 | 20486428 | 20486339 | ID=cds.MS.gene43288.t1;Parent=MS.gene43288.t1 |
| chr8.4 | exon | 20487255 | 20487434 | 20487255 | ID=MS.gene43288.t1.exon5;Parent=MS.gene43288.t1 |
| chr8.4 | CDS | 20487255 | 20487434 | 20487255 | ID=cds.MS.gene43288.t1;Parent=MS.gene43288.t1 |
| Gene Sequence |
| Protein sequence |
