Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43426.t1 | XP_013458657.1 | 97.5 | 279 | 6 | 1 | 1 | 279 | 1 | 278 | 2.70E-153 | 551.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43426.t1 | Q94B74 | 56.5 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 2.1e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43426.t1 | A0A072US93 | 97.5 | 279 | 6 | 1 | 1 | 279 | 1 | 278 | 2.0e-153 | 551.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052611 | MS.gene43426 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene43426 | 0.814821 | 1.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43426 | MS.gene05654 | PPI |
| MS.gene04304 | MS.gene43426 | PPI |
| MS.gene04190 | MS.gene43426 | PPI |
| MS.gene94957 | MS.gene43426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43426.t1 | MTR_4g133945 | 97.491 | 279 | 6 | 1 | 1 | 279 | 1 | 278 | 0.0 | 566 |
| MS.gene43426.t1 | MTR_2g026715 | 72.662 | 278 | 70 | 4 | 4 | 278 | 46 | 320 | 1.17e-148 | 419 |
| MS.gene43426.t1 | MTR_3g460790 | 58.801 | 267 | 107 | 2 | 11 | 277 | 23 | 286 | 2.50e-112 | 325 |
| MS.gene43426.t1 | MTR_8g091995 | 57.422 | 256 | 105 | 2 | 14 | 269 | 19 | 270 | 4.54e-104 | 305 |
| MS.gene43426.t1 | MTR_3g082770 | 54.086 | 257 | 113 | 3 | 13 | 269 | 80 | 331 | 5.21e-102 | 301 |
| MS.gene43426.t1 | MTR_3g460790 | 63.285 | 207 | 74 | 1 | 11 | 217 | 23 | 227 | 8.47e-93 | 275 |
| MS.gene43426.t1 | MTR_2g026715 | 73.864 | 176 | 41 | 3 | 4 | 176 | 59 | 232 | 4.89e-91 | 270 |
| MS.gene43426.t1 | MTR_4g100480 | 46.816 | 267 | 140 | 2 | 13 | 279 | 91 | 355 | 2.12e-84 | 257 |
| MS.gene43426.t1 | MTR_0446s0020 | 95.522 | 67 | 3 | 0 | 213 | 279 | 2 | 68 | 6.74e-43 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43426.t1 | AT5G47650 | 56.537 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 1.59e-112 | 326 |
| MS.gene43426.t1 | AT5G47650 | 56.537 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 1.59e-112 | 326 |
| MS.gene43426.t1 | AT5G47650 | 56.537 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 1.59e-112 | 326 |
| MS.gene43426.t1 | AT5G47650 | 57.565 | 271 | 110 | 3 | 7 | 277 | 60 | 325 | 1.59e-111 | 325 |
| MS.gene43426.t1 | AT5G47650 | 57.565 | 271 | 110 | 3 | 7 | 277 | 59 | 324 | 1.66e-111 | 325 |
| MS.gene43426.t1 | AT4G25434 | 55.000 | 260 | 110 | 4 | 12 | 269 | 18 | 272 | 6.51e-98 | 289 |
| MS.gene43426.t1 | AT4G25434 | 53.846 | 260 | 108 | 5 | 12 | 269 | 18 | 267 | 7.20e-93 | 276 |
| MS.gene43426.t1 | AT4G25434 | 49.826 | 287 | 110 | 5 | 12 | 269 | 18 | 299 | 5.50e-92 | 275 |
| MS.gene43426.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.72e-91 | 272 |
| MS.gene43426.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.72e-91 | 272 |
| MS.gene43426.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.72e-91 | 272 |
| MS.gene43426.t1 | AT4G25434 | 48.288 | 292 | 112 | 6 | 7 | 269 | 13 | 294 | 6.25e-87 | 261 |
| MS.gene43426.t1 | AT4G25434 | 60.697 | 201 | 77 | 2 | 12 | 212 | 18 | 216 | 1.54e-85 | 255 |
| MS.gene43426.t1 | AT5G47240 | 48.529 | 272 | 130 | 5 | 1 | 269 | 86 | 350 | 2.43e-84 | 257 |
| MS.gene43426.t1 | AT4G12720 | 44.481 | 308 | 125 | 5 | 10 | 275 | 7 | 310 | 2.74e-83 | 253 |
| MS.gene43426.t1 | AT2G04450 | 49.624 | 266 | 127 | 5 | 7 | 269 | 4 | 265 | 2.74e-83 | 251 |
| MS.gene43426.t1 | AT4G25434 | 59.204 | 201 | 75 | 3 | 12 | 212 | 18 | 211 | 1.78e-80 | 242 |
| MS.gene43426.t1 | AT2G04430 | 49.383 | 243 | 120 | 2 | 10 | 249 | 7 | 249 | 2.62e-80 | 244 |
| MS.gene43426.t1 | AT2G04430 | 49.383 | 243 | 120 | 2 | 10 | 249 | 26 | 268 | 7.28e-80 | 243 |
| MS.gene43426.t1 | AT4G25434 | 52.790 | 233 | 81 | 3 | 7 | 212 | 13 | 243 | 7.38e-80 | 241 |
| MS.gene43426.t1 | AT5G47240 | 43.854 | 301 | 130 | 6 | 1 | 269 | 86 | 379 | 6.14e-78 | 242 |
| MS.gene43426.t1 | AT4G25434 | 56.784 | 199 | 81 | 2 | 73 | 269 | 32 | 227 | 9.93e-78 | 236 |
| MS.gene43426.t1 | AT4G25434 | 56.784 | 199 | 81 | 2 | 73 | 269 | 32 | 227 | 9.93e-78 | 236 |
| MS.gene43426.t1 | AT4G12720 | 55.122 | 205 | 88 | 3 | 10 | 212 | 7 | 209 | 1.21e-75 | 230 |
| MS.gene43426.t1 | AT4G25434 | 55.276 | 199 | 79 | 3 | 73 | 269 | 32 | 222 | 1.49e-72 | 223 |
| MS.gene43426.t1 | AT4G25434 | 57.396 | 169 | 70 | 2 | 7 | 175 | 13 | 179 | 1.33e-64 | 202 |
| MS.gene43426.t1 | AT4G25434 | 48.571 | 210 | 76 | 3 | 89 | 269 | 1 | 207 | 1.27e-62 | 197 |
| MS.gene43426.t1 | AT4G25434 | 49.490 | 196 | 70 | 3 | 7 | 175 | 13 | 206 | 6.87e-59 | 188 |
| MS.gene43426.t1 | AT4G12720 | 49.735 | 189 | 91 | 3 | 89 | 275 | 1 | 187 | 1.54e-58 | 186 |
| MS.gene43426.t1 | AT2G04440 | 44.199 | 181 | 93 | 2 | 7 | 180 | 4 | 183 | 3.67e-45 | 152 |
Find 55 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACAAGCATCAAATATTT+TGG | 0.159229 | 8.4:-805499 | None:intergenic |
| TTCAAATAAAGATGGCTATT+TGG | 0.203005 | 8.4:-807603 | None:intergenic |
| AAGATTGATGGACATTATTC+TGG | 0.227648 | 8.4:+807540 | MS.gene43426:CDS |
| ATTAATGGATCACCCTATTA+TGG | 0.228313 | 8.4:+804668 | MS.gene43426:CDS |
| ATATGCAGCTCAGCCATTTA+TGG | 0.279024 | 8.4:+807473 | MS.gene43426:CDS |
| TTGTGGAAGTATTAGCATTC+AGG | 0.296467 | 8.4:+806759 | MS.gene43426:CDS |
| CGGTGTTATCGTAGAATTAA+TGG | 0.299809 | 8.4:+804653 | MS.gene43426:CDS |
| TTACACCTTCAATTTCTAAC+TGG | 0.317897 | 8.4:+804715 | MS.gene43426:CDS |
| AAGGTAGTAGAATCCATAAT+AGG | 0.322907 | 8.4:-804681 | None:intergenic |
| GATAAAATTACCTATTCATC+TGG | 0.356295 | 8.4:+805301 | MS.gene43426:CDS |
| ACAATGAATTACTCCTCTTA+AGG | 0.361763 | 8.4:-807635 | None:intergenic |
| ACTCGGTGTGTGGCATTTGC+AGG | 0.374095 | 8.4:-805550 | None:intergenic |
| GCCATTTATGGAAAAGTATG+AGG | 0.393678 | 8.4:+807485 | MS.gene43426:CDS |
| TCCTACCGGAGTTGCTGATC+AGG | 0.409277 | 8.4:+806467 | MS.gene43426:CDS |
| AATAAAGATGGCTATTTGGC+TGG | 0.419860 | 8.4:-807599 | None:intergenic |
| ACAAGGTTGGCCAGATGAAT+AGG | 0.422162 | 8.4:-805311 | None:intergenic |
| CAGCTTCTATCTCGACCTCC+TGG | 0.426451 | 8.4:-807182 | None:intergenic |
| TGTAGGGCAAGAAGGGTGTT+TGG | 0.427765 | 8.4:+805279 | MS.gene43426:intron |
| AATATTTGATGCTTGTACAT+TGG | 0.428434 | 8.4:+805503 | MS.gene43426:CDS |
| AGCCATCTTTATTTGAATGC+TGG | 0.428650 | 8.4:+807609 | MS.gene43426:CDS |
| GCCACACACCGAGTGGGTAT+TGG | 0.432566 | 8.4:+805559 | MS.gene43426:CDS |
| AGAGAGGTCAAAGAAGAAAC+AGG | 0.434993 | 8.4:+806597 | MS.gene43426:CDS |
| TGTTTCCAGTTAGAAATTGA+AGG | 0.439398 | 8.4:-804720 | None:intergenic |
| AGGTAGTAGAATCCATAATA+GGG | 0.451351 | 8.4:-804680 | None:intergenic |
| CATTGTCTTGTAGGGCAAGA+AGG | 0.454453 | 8.4:+805271 | MS.gene43426:intron |
| TTGATCTTCTTCTTCTGTTG+AGG | 0.456043 | 8.4:-804595 | None:intergenic |
| TCAGATAGACTCGGAATTTG+TGG | 0.463019 | 8.4:+806742 | MS.gene43426:intron |
| ATATACTTGGCAAAGATTGA+TGG | 0.464974 | 8.4:+807528 | MS.gene43426:CDS |
| AATTTCTAACTGGAAACAAC+AGG | 0.477830 | 8.4:+804725 | MS.gene43426:CDS |
| TGAATGCTGGAGGCCTTAAG+AGG | 0.480821 | 8.4:+807622 | MS.gene43426:CDS |
| AATTAAAGTTTCCACAAGGT+TGG | 0.483065 | 8.4:-805324 | None:intergenic |
| AACTCCGGTAGGAAATTTCC+AGG | 0.487178 | 8.4:-806457 | None:intergenic |
| AGTGGGTATTGGAGCGTTTG+TGG | 0.488578 | 8.4:+805570 | MS.gene43426:CDS |
| AGAAATTGAAGGTGTAAGAA+TGG | 0.490971 | 8.4:-804709 | None:intergenic |
| TGAGCTGCATATTCATCAAA+TGG | 0.494421 | 8.4:-807462 | None:intergenic |
| GTGTGTGGCATTTGCAGGAA+TGG | 0.522297 | 8.4:-805545 | None:intergenic |
| CTCCAGCATTCAAATAAAGA+TGG | 0.531291 | 8.4:-807611 | None:intergenic |
| AGGTGTAAGAATGGATAAGA+AGG | 0.540844 | 8.4:-804700 | None:intergenic |
| TGCAAATGCCACACACCGAG+TGG | 0.544339 | 8.4:+805552 | MS.gene43426:CDS |
| ATTGTCTTGTAGGGCAAGAA+GGG | 0.550569 | 8.4:+805272 | MS.gene43426:intron |
| CATCTTTATTTGAATGCTGG+AGG | 0.553074 | 8.4:+807612 | MS.gene43426:CDS |
| TATTCATCTGGCCAACCTTG+TGG | 0.553285 | 8.4:+805313 | MS.gene43426:CDS |
| GGTCGAGATAGAAGCTGCAA+AGG | 0.563992 | 8.4:+807188 | MS.gene43426:CDS |
| TCCAATACCCACTCGGTGTG+TGG | 0.564012 | 8.4:-805560 | None:intergenic |
| TTGTGCAGCAGCAGTAAGAG+AGG | 0.565131 | 8.4:+806581 | MS.gene43426:CDS |
| GTACATTAATGACATATACT+TGG | 0.579892 | 8.4:+807515 | MS.gene43426:CDS |
| CATTAATTAAAGTTTCCACA+AGG | 0.606195 | 8.4:-805328 | None:intergenic |
| GGATCCTGGAAATTTCCTAC+CGG | 0.606581 | 8.4:+806453 | MS.gene43426:CDS |
| ATTTACCTGATCAGCAACTC+CGG | 0.611010 | 8.4:-806472 | None:intergenic |
| CAAACGCTCCAATACCCACT+CGG | 0.649930 | 8.4:-805567 | None:intergenic |
| ACCTGATCAGCAACTCCGGT+AGG | 0.652284 | 8.4:-806468 | None:intergenic |
| GCAAATGCCACACACCGAGT+GGG | 0.669457 | 8.4:+805553 | MS.gene43426:CDS |
| ACTTCTCAAAGAATGTCATG+TGG | 0.686811 | 8.4:-807107 | None:intergenic |
| TGTGGTGAATGATAAACGAG+AGG | 0.692588 | 8.4:+805588 | MS.gene43426:CDS |
| TCAACTGATGATGAATATAG+CGG | 0.707705 | 8.4:+804633 | MS.gene43426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTTACTAACTCTAA+TGG | + | chr8.4:804763-804782 | MS.gene43426:intron | 15.0% |
| !!! | AACTTTCTTATTTTGAAAAT+AGG | - | chr8.4:805921-805940 | None:intergenic | 15.0% |
| !! | AATTTCTATTCCCATAATAA+AGG | - | chr8.4:806089-806108 | None:intergenic | 20.0% |
| !! | AGAATATATGTAAGAAATTG+TGG | - | chr8.4:807285-807304 | None:intergenic | 20.0% |
| !! | AGTATCCTTTAAATTGATTA+AGG | - | chr8.4:804852-804871 | None:intergenic | 20.0% |
| !! | ATAAACCATGATATTGTTAT+TGG | - | chr8.4:806924-806943 | None:intergenic | 20.0% |
| !! | ATCTGAAAATTGAAAAAACT+TGG | - | chr8.4:806728-806747 | None:intergenic | 20.0% |
| !! | ATTCATTATATATAGCAACA+GGG | + | chr8.4:807407-807426 | MS.gene43426:intron | 20.0% |
| !! | ATTTCTATTCCCATAATAAA+GGG | - | chr8.4:806088-806107 | None:intergenic | 20.0% |
| !! | CAACAACTAAACAATAAAAT+CGG | - | chr8.4:806986-807005 | None:intergenic | 20.0% |
| !! | CTTATCCTTAATCAATTTAA+AGG | + | chr8.4:804844-804863 | MS.gene43426:intron | 20.0% |
| !! | GTAGTAATTGAACTAATTAA+GGG | + | chr8.4:804974-804993 | MS.gene43426:intron | 20.0% |
| !! | TATTCATTATATATAGCAAC+AGG | + | chr8.4:807406-807425 | MS.gene43426:intron | 20.0% |
| !! | TCAAAATAAGAAAGTTAACA+AGG | + | chr8.4:805925-805944 | MS.gene43426:intron | 20.0% |
| !! | TTGAAATTATGCACTAAATA+AGG | + | chr8.4:807225-807244 | MS.gene43426:intron | 20.0% |
| !! | TTTAGTTGTTGAAAAAATGT+AGG | + | chr8.4:806995-807014 | MS.gene43426:intron | 20.0% |
| !!! | AATGTTATTTCTATGTATCA+AGG | - | chr8.4:806188-806207 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTAGATTGAATGT+GGG | - | chr8.4:805032-805051 | None:intergenic | 20.0% |
| !!! | TAAGAAATTGTGGTATTTTA+GGG | - | chr8.4:807275-807294 | None:intergenic | 20.0% |
| !!! | TAATATTTCATTTTGTGTGT+TGG | + | chr8.4:806801-806820 | MS.gene43426:intron | 20.0% |
| ! | AATATTTGATGCTTGTACAT+TGG | + | chr8.4:805503-805522 | MS.gene43426:CDS | 25.0% |
| ! | AATGATATTTATGAGTGAGT+GGG | - | chr8.4:805002-805021 | None:intergenic | 25.0% |
| ! | ACAATATCATGGTTTATAAG+CGG | + | chr8.4:806927-806946 | MS.gene43426:intron | 25.0% |
| ! | ACATTCGTTTATTCTTTCAT+CGG | + | chr8.4:807070-807089 | MS.gene43426:intron | 25.0% |
| ! | ACCCTAAATATATAACCATA+TGG | - | chr8.4:805690-805709 | None:intergenic | 25.0% |
| ! | ATTCAGAAAGATTAGGAATA+CGG | + | chr8.4:805175-805194 | MS.gene43426:intron | 25.0% |
| ! | CATTAATTAAAGTTTCCACA+AGG | - | chr8.4:805331-805350 | None:intergenic | 25.0% |
| ! | CCCATATGGTTATATATTTA+GGG | + | chr8.4:805686-805705 | MS.gene43426:intron | 25.0% |
| ! | CCCTAAATATATAACCATAT+GGG | - | chr8.4:805689-805708 | None:intergenic | 25.0% |
| ! | GATAAAATTACCTATTCATC+TGG | + | chr8.4:805301-805320 | MS.gene43426:CDS | 25.0% |
| ! | GGTAGTAATTGAACTAATTA+AGG | + | chr8.4:804973-804992 | MS.gene43426:intron | 25.0% |
| ! | GTACATTAATGACATATACT+TGG | + | chr8.4:807515-807534 | MS.gene43426:CDS | 25.0% |
| ! | TAATGATATTTATGAGTGAG+TGG | - | chr8.4:805003-805022 | None:intergenic | 25.0% |
| ! | TCCCATATGGTTATATATTT+AGG | + | chr8.4:805685-805704 | MS.gene43426:intron | 25.0% |
| ! | TGAAAAAACTTGGAACAATT+AGG | - | chr8.4:806718-806737 | None:intergenic | 25.0% |
| ! | TGAGTAGATTATATAAACCA+AGG | - | chr8.4:806539-806558 | None:intergenic | 25.0% |
| ! | TTCAAATAAAGATGGCTATT+TGG | - | chr8.4:807606-807625 | None:intergenic | 25.0% |
| ! | TTCTTAGATGCTAAATAATC+AGG | - | chr8.4:805131-805150 | None:intergenic | 25.0% |
| !! | GTAAGAAATTGTGGTATTTT+AGG | - | chr8.4:807276-807295 | None:intergenic | 25.0% |
| !! | TGTACAAGCATCAAATATTT+TGG | - | chr8.4:805502-805521 | None:intergenic | 25.0% |
| !! | TTTCAATTTTCAGATAGACT+CGG | + | chr8.4:806733-806752 | MS.gene43426:intron | 25.0% |
| !! | TTTTGATGTCAAAAGAAAGA+GGG | - | chr8.4:807161-807180 | None:intergenic | 25.0% |
| !!! | AAGTTTGATTTTGTAGATAC+AGG | - | chr8.4:807573-807592 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTGTAGATACA+GGG | - | chr8.4:807572-807591 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTCAAAAGAAAG+AGG | - | chr8.4:807162-807181 | None:intergenic | 25.0% |
| !!! | CAAAATTTTCCTTAGTTTTC+TGG | - | chr8.4:805744-805763 | None:intergenic | 25.0% |
| !!! | CAGTAAATTTTAGTATTGTG+AGG | + | chr8.4:807376-807395 | MS.gene43426:intron | 25.0% |
| !!! | GAATTATGCAGAGTTATTTT+CGG | - | chr8.4:806338-806357 | None:intergenic | 25.0% |
| !!! | GATAAGTTTTAGATTGAATG+TGG | - | chr8.4:805033-805052 | None:intergenic | 25.0% |
| AACTCTGCATAATTCTGAAT+TGG | + | chr8.4:806343-806362 | MS.gene43426:intron | 30.0% | |
| AAGGTAGTAGAATCCATAAT+AGG | - | chr8.4:804684-804703 | None:intergenic | 30.0% | |
| AATAAACGAATGTGAATTCC+TGG | - | chr8.4:807063-807082 | None:intergenic | 30.0% | |
| AATTAAAGTTTCCACAAGGT+TGG | - | chr8.4:805327-805346 | None:intergenic | 30.0% | |
| AATTTCTAACTGGAAACAAC+AGG | + | chr8.4:804725-804744 | MS.gene43426:CDS | 30.0% | |
| ACAATGAATTACTCCTCTTA+AGG | - | chr8.4:807638-807657 | None:intergenic | 30.0% | |
| AGAAAGTAAAGCTAGAAACT+AGG | + | chr8.4:806013-806032 | MS.gene43426:intron | 30.0% | |
| AGGTAGTAGAATCCATAATA+GGG | - | chr8.4:804683-804702 | None:intergenic | 30.0% | |
| ATATACTTGGCAAAGATTGA+TGG | + | chr8.4:807528-807547 | MS.gene43426:CDS | 30.0% | |
| ATGCTAAATAATCAGGAAAC+TGG | - | chr8.4:805124-805143 | None:intergenic | 30.0% | |
| CTCATTTCCTAGTTATCAAA+TGG | + | chr8.4:806382-806401 | MS.gene43426:intron | 30.0% | |
| TCAATTACTACCCATGAAAA+AGG | - | chr8.4:804965-804984 | None:intergenic | 30.0% | |
| TCGAGTTATTCAGAAAGATT+AGG | + | chr8.4:805168-805187 | MS.gene43426:intron | 30.0% | |
| TGAAAAAGGATCAGATCTAT+TGG | - | chr8.4:804951-804970 | None:intergenic | 30.0% | |
| TGAATCAACATTGTCTTGTA+GGG | + | chr8.4:805263-805282 | MS.gene43426:intron | 30.0% | |
| TGTTTCCAGTTAGAAATTGA+AGG | - | chr8.4:804723-804742 | None:intergenic | 30.0% | |
| TTACACCTTCAATTTCTAAC+TGG | + | chr8.4:804715-804734 | MS.gene43426:CDS | 30.0% | |
| TTGAATCAACATTGTCTTGT+AGG | + | chr8.4:805262-805281 | MS.gene43426:intron | 30.0% | |
| TTGTGTATGTGTATCTTGTT+TGG | + | chr8.4:804797-804816 | MS.gene43426:intron | 30.0% | |
| ! | AAGATTGATGGACATTATTC+TGG | + | chr8.4:807540-807559 | MS.gene43426:CDS | 30.0% |
| ! | ACCTCATACTTTTCCATAAA+TGG | - | chr8.4:807489-807508 | None:intergenic | 30.0% |
| ! | AGAAAAAACTGGACATTTTC+AGG | + | chr8.4:806425-806444 | MS.gene43426:CDS | 30.0% |
| ! | AGAAATTGAAGGTGTAAGAA+TGG | - | chr8.4:804712-804731 | None:intergenic | 30.0% |
| ! | ATTAATGGATCACCCTATTA+TGG | + | chr8.4:804668-804687 | MS.gene43426:CDS | 30.0% |
| ! | GAAAAAACTGGACATTTTCA+GGG | + | chr8.4:806426-806445 | MS.gene43426:CDS | 30.0% |
| ! | TCAACTGATGATGAATATAG+CGG | + | chr8.4:804633-804652 | MS.gene43426:CDS | 30.0% |
| ! | TTCATTTTGTGTGTTGGAAA+AGG | + | chr8.4:806807-806826 | MS.gene43426:intron | 30.0% |
| ! | TTCTTTTCATTACTTCGCAT+TGG | + | chr8.4:807301-807320 | MS.gene43426:intron | 30.0% |
| ! | TTCTTTTGACATCAAAATCC+AGG | + | chr8.4:807164-807183 | MS.gene43426:CDS | 30.0% |
| !! | AGCTTACAATTTTGATAACC+AGG | + | chr8.4:807042-807061 | MS.gene43426:intron | 30.0% |
| !! | ATAGATCTGATCCTTTTTCA+TGG | + | chr8.4:804951-804970 | MS.gene43426:intron | 30.0% |
| !! | GTTTGATTTTGTAGATACAG+GGG | - | chr8.4:807571-807590 | None:intergenic | 30.0% |
| !! | TAGATCTGATCCTTTTTCAT+GGG | + | chr8.4:804952-804971 | MS.gene43426:intron | 30.0% |
| !!! | ATTGGAAAGTCTCTTTTTTC+TGG | + | chr8.4:807319-807338 | MS.gene43426:intron | 30.0% |
| !!! | TCAAATATTTTGGTTCTGCA+TGG | - | chr8.4:805492-805511 | None:intergenic | 30.0% |
| AAACTAGGAATCTTTACCTC+AGG | + | chr8.4:806028-806047 | MS.gene43426:intron | 35.0% | |
| AAATGACAAGTTAGTACGCA+AGG | - | chr8.4:805414-805433 | None:intergenic | 35.0% | |
| AATAAAGATGGCTATTTGGC+TGG | - | chr8.4:807602-807621 | None:intergenic | 35.0% | |
| AATTAGGCTTAGAATCACGT+TGG | - | chr8.4:806702-806721 | None:intergenic | 35.0% | |
| ACAAAACTTGGGTCTCAATA+AGG | + | chr8.4:805199-805218 | MS.gene43426:intron | 35.0% | |
| ACTTCTCAAAGAATGTCATG+TGG | - | chr8.4:807110-807129 | None:intergenic | 35.0% | |
| AGGAATACGGAACAAAACTT+GGG | + | chr8.4:805188-805207 | MS.gene43426:intron | 35.0% | |
| AGGAGTAAGTAATCTCTTTG+CGG | + | chr8.4:806617-806636 | MS.gene43426:intron | 35.0% | |
| AGGTGTAAGAATGGATAAGA+AGG | - | chr8.4:804703-804722 | None:intergenic | 35.0% | |
| ATCCAGATAACTTTCTACGT+AGG | + | chr8.4:805978-805997 | MS.gene43426:intron | 35.0% | |
| ATGTCTAGTGCACATTCAAT+AGG | - | chr8.4:806645-806664 | None:intergenic | 35.0% | |
| CAAAACTTGGGTCTCAATAA+GGG | + | chr8.4:805200-805219 | MS.gene43426:intron | 35.0% | |
| CCTAGTTATCAAATGGTGTT+AGG | + | chr8.4:806389-806408 | MS.gene43426:intron | 35.0% | |
| CTAGTGCTTCAAGAAAAAAC+TGG | + | chr8.4:806414-806433 | MS.gene43426:CDS | 35.0% | |
| CTCCAGCATTCAAATAAAGA+TGG | - | chr8.4:807614-807633 | None:intergenic | 35.0% | |
| GTGCACCAATAACAATATCA+TGG | + | chr8.4:806916-806935 | MS.gene43426:intron | 35.0% | |
| TAGGAATACGGAACAAAACT+TGG | + | chr8.4:805187-805206 | MS.gene43426:intron | 35.0% | |
| TAGTAGAAGAAGCTATTCCT+TGG | + | chr8.4:806519-806538 | MS.gene43426:intron | 35.0% | |
| TGAGCTGCATATTCATCAAA+TGG | - | chr8.4:807465-807484 | None:intergenic | 35.0% | |
| TGCACTAGACATGAACTTAT+TGG | + | chr8.4:806653-806672 | MS.gene43426:intron | 35.0% | |
| TTAATTGTTATGTGCTGCAG+TGG | + | chr8.4:807436-807455 | MS.gene43426:intron | 35.0% | |
| TTCTACGTAGGTGTGTATAA+AGG | + | chr8.4:805990-806009 | MS.gene43426:intron | 35.0% | |
| TTGATCTTCTTCTTCTGTTG+AGG | - | chr8.4:804598-804617 | None:intergenic | 35.0% | |
| ! | AGCCATCTTTATTTGAATGC+TGG | + | chr8.4:807609-807628 | MS.gene43426:CDS | 35.0% |
| ! | CATCTTTATTTGAATGCTGG+AGG | + | chr8.4:807612-807631 | MS.gene43426:CDS | 35.0% |
| ! | CCTAACACCATTTGATAACT+AGG | - | chr8.4:806392-806411 | None:intergenic | 35.0% |
| ! | GCCATTTATGGAAAAGTATG+AGG | + | chr8.4:807485-807504 | MS.gene43426:CDS | 35.0% |
| ! | TTTTGACATCAAAATCCAGG+AGG | + | chr8.4:807167-807186 | MS.gene43426:CDS | 35.0% |
| !! | CGGTGTTATCGTAGAATTAA+TGG | + | chr8.4:804653-804672 | MS.gene43426:CDS | 35.0% |
| !! | GCTTGATCAGAAGCATTATT+AGG | + | chr8.4:805842-805861 | MS.gene43426:intron | 35.0% |
| !! | TGGAAAAGTATGAGGTTTTG+AGG | + | chr8.4:807493-807512 | MS.gene43426:CDS | 35.0% |
| !! | TTGTGGAAGTATTAGCATTC+AGG | + | chr8.4:806759-806778 | MS.gene43426:CDS | 35.0% |
| AAACTTCCAATGGCTGAACA+TGG | + | chr8.4:806837-806856 | MS.gene43426:intron | 40.0% | |
| AACGTGACCAAGCAAAAACA+AGG | - | chr8.4:806868-806887 | None:intergenic | 40.0% | |
| AATCTACTCATTCTGCTGCA+GGG | + | chr8.4:806549-806568 | MS.gene43426:intron | 40.0% | |
| AGAGAGGTCAAAGAAGAAAC+AGG | + | chr8.4:806597-806616 | MS.gene43426:CDS | 40.0% | |
| AGATCACATAGGAAGACAGA+TGG | - | chr8.4:806276-806295 | None:intergenic | 40.0% | |
| AGATGGCTGTCCCTTTATTA+TGG | + | chr8.4:806075-806094 | MS.gene43426:intron | 40.0% | |
| AGGAAGTTCCAAACTTCCAA+TGG | + | chr8.4:806827-806846 | MS.gene43426:intron | 40.0% | |
| ATATGCAGCTCAGCCATTTA+TGG | + | chr8.4:807473-807492 | MS.gene43426:CDS | 40.0% | |
| ATGTTCAGCCATTGGAAGTT+TGG | - | chr8.4:806838-806857 | None:intergenic | 40.0% | |
| ATTGTCTTGTAGGGCAAGAA+GGG | + | chr8.4:805272-805291 | MS.gene43426:intron | 40.0% | |
| ATTTACCTGATCAGCAACTC+CGG | - | chr8.4:806475-806494 | None:intergenic | 40.0% | |
| CACCTACGTAGAAAGTTATC+TGG | - | chr8.4:805983-806002 | None:intergenic | 40.0% | |
| GATCAGGTTTCTGCACAATT+TGG | + | chr8.4:805650-805669 | MS.gene43426:intron | 40.0% | |
| GATGGCTGTCCCTTTATTAT+GGG | + | chr8.4:806076-806095 | MS.gene43426:intron | 40.0% | |
| GCATTATTAGGTGAGTCCTA+TGG | + | chr8.4:805854-805873 | MS.gene43426:intron | 40.0% | |
| TAATCTACTCATTCTGCTGC+AGG | + | chr8.4:806548-806567 | MS.gene43426:intron | 40.0% | |
| TATCTGTCACAATTCTGTGC+AGG | + | chr8.4:805450-805469 | MS.gene43426:intron | 40.0% | |
| TCAGATAGACTCGGAATTTG+TGG | + | chr8.4:806742-806761 | MS.gene43426:intron | 40.0% | |
| TCTAACTGGAAACAACAGGT+AGG | + | chr8.4:804729-804748 | MS.gene43426:intron | 40.0% | |
| TGTGGTGAATGATAAACGAG+AGG | + | chr8.4:805588-805607 | MS.gene43426:CDS | 40.0% | |
| ! | ATTCTGTGCAGGAAGGTTTT+TGG | + | chr8.4:805461-805480 | MS.gene43426:intron | 40.0% |
| ! | GTACTGACAACAGATCACAT+AGG | - | chr8.4:806287-806306 | None:intergenic | 40.0% |
| !! | GGAAGTATTAGCATTCAGGT+GGG | + | chr8.4:806763-806782 | MS.gene43426:intron | 40.0% |
| !! | TGGAAGTATTAGCATTCAGG+TGG | + | chr8.4:806762-806781 | MS.gene43426:intron | 40.0% |
| AACTCCGGTAGGAAATTTCC+AGG | - | chr8.4:806460-806479 | None:intergenic | 45.0% | |
| ACAAGCTCAACAAGCTCATG+AGG | + | chr8.4:805790-805809 | MS.gene43426:intron | 45.0% | |
| ACTGGAAACAACAGGTAGGT+AGG | + | chr8.4:804733-804752 | MS.gene43426:intron | 45.0% | |
| CACACTCCCATATGGTTAGA+TGG | + | chr8.4:806058-806077 | MS.gene43426:intron | 45.0% | |
| CATTGTCTTGTAGGGCAAGA+AGG | + | chr8.4:805271-805290 | MS.gene43426:intron | 45.0% | |
| CTAGCGTGACCAGAAAACTA+AGG | + | chr8.4:805732-805751 | MS.gene43426:intron | 45.0% | |
| CTAGTGACAATTTCCAGCAC+AGG | - | chr8.4:805234-805253 | None:intergenic | 45.0% | |
| GAAGCACAAACACTCCCATA+TGG | + | chr8.4:805672-805691 | MS.gene43426:intron | 45.0% | |
| GGAAACCTTTACCGTTCTTC+AGG | - | chr8.4:805900-805919 | None:intergenic | 45.0% | |
| GGACAGCCATCTAACCATAT+GGG | - | chr8.4:806067-806086 | None:intergenic | 45.0% | |
| GGATCCTGGAAATTTCCTAC+CGG | + | chr8.4:806453-806472 | MS.gene43426:CDS | 45.0% | |
| GTCCTATGGATACACAACTC+CGG | + | chr8.4:805868-805887 | MS.gene43426:intron | 45.0% | |
| TATGGATACACAACTCCGGT+GGG | + | chr8.4:805872-805891 | MS.gene43426:intron | 45.0% | |
| TATTCATCTGGCCAACCTTG+TGG | + | chr8.4:805313-805332 | MS.gene43426:CDS | 45.0% | |
| TGTCACAATTCTGTGCAGGA+AGG | + | chr8.4:805454-805473 | MS.gene43426:intron | 45.0% | |
| TGTGCAGAAACCTGATCATG+TGG | - | chr8.4:805647-805666 | None:intergenic | 45.0% | |
| ! | ACAAGGTTGGCCAGATGAAT+AGG | - | chr8.4:805314-805333 | None:intergenic | 45.0% |
| !! | ACTGGACATTTTCAGGGAAC+TGG | + | chr8.4:806432-806451 | MS.gene43426:CDS | 45.0% |
| !! | ATTTTCAGGGAACTGGATCC+TGG | + | chr8.4:806439-806458 | MS.gene43426:CDS | 45.0% |
| !! | CTTAGTTTTCTGGTCACGCT+AGG | - | chr8.4:805734-805753 | None:intergenic | 45.0% |
| !!! | GGAGAGTCCTTGTTTTTGCT+TGG | + | chr8.4:806858-806877 | MS.gene43426:intron | 45.0% |
| !!! | TCACGTTGGTTCTTTTGTCG+TGG | - | chr8.4:806688-806707 | None:intergenic | 45.0% |
| AAGGGACAGTTTACCTGTGC+TGG | + | chr8.4:805218-805237 | MS.gene43426:intron | 50.0% | |
| AGCGGTCAGATAATACGTGC+TGG | + | chr8.4:806945-806964 | MS.gene43426:intron | 50.0% | |
| CAAACGCTCCAATACCCACT+CGG | - | chr8.4:805570-805589 | None:intergenic | 50.0% | |
| CACCGGAGTTGTGTATCCAT+AGG | - | chr8.4:805873-805892 | None:intergenic | 50.0% | |
| CTATGGATACACAACTCCGG+TGG | + | chr8.4:805871-805890 | MS.gene43426:intron | 50.0% | |
| GAAGCACACACACTCCCATA+TGG | + | chr8.4:806050-806069 | MS.gene43426:intron | 50.0% | |
| GACTCTCCATGTTCAGCCAT+TGG | - | chr8.4:806846-806865 | None:intergenic | 50.0% | |
| GGGACAGCCATCTAACCATA+TGG | - | chr8.4:806068-806087 | None:intergenic | 50.0% | |
| GGGTTCCTGAAGAACGGTAA+AGG | + | chr8.4:805892-805911 | MS.gene43426:intron | 50.0% | |
| GGTCGAGATAGAAGCTGCAA+AGG | + | chr8.4:807188-807207 | MS.gene43426:CDS | 50.0% | |
| GTGTGTGGCATTTGCAGGAA+TGG | - | chr8.4:805548-805567 | None:intergenic | 50.0% | |
| TGAATGCTGGAGGCCTTAAG+AGG | + | chr8.4:807622-807641 | MS.gene43426:CDS | 50.0% | |
| TGCAGAGCAACCACATGATC+AGG | + | chr8.4:805634-805653 | MS.gene43426:intron | 50.0% | |
| TTGTGCAGCAGCAGTAAGAG+AGG | + | chr8.4:806581-806600 | MS.gene43426:CDS | 50.0% | |
| !! | AGTGGGTATTGGAGCGTTTG+TGG | + | chr8.4:805570-805589 | MS.gene43426:CDS | 50.0% |
| !! | TGTAGGGCAAGAAGGGTGTT+TGG | + | chr8.4:805279-805298 | MS.gene43426:intron | 50.0% |
| ACCGTTCTTCAGGAACCCAC+CGG | - | chr8.4:805890-805909 | None:intergenic | 55.0% | |
| ACCTGATCAGCAACTCCGGT+AGG | - | chr8.4:806471-806490 | None:intergenic | 55.0% | |
| CAGCTTCTATCTCGACCTCC+TGG | - | chr8.4:807185-807204 | None:intergenic | 55.0% | |
| GCAAATGCCACACACCGAGT+GGG | + | chr8.4:805553-805572 | MS.gene43426:CDS | 55.0% | |
| TCCTACCGGAGTTGCTGATC+AGG | + | chr8.4:806467-806486 | MS.gene43426:CDS | 55.0% | |
| TGCAAATGCCACACACCGAG+TGG | + | chr8.4:805552-805571 | MS.gene43426:CDS | 55.0% | |
| ! | TCCGGTGGGTTCCTGAAGAA+CGG | + | chr8.4:805886-805905 | MS.gene43426:intron | 55.0% |
| !! | ACTCGGTGTGTGGCATTTGC+AGG | - | chr8.4:805553-805572 | None:intergenic | 55.0% |
| !! | TCCAATACCCACTCGGTGTG+TGG | - | chr8.4:805563-805582 | None:intergenic | 55.0% |
| GCCACACACCGAGTGGGTAT+TGG | + | chr8.4:805559-805578 | MS.gene43426:CDS | 60.0% | |
| ! | GGGAGTGTGTGTGCTTCCTG+AGG | - | chr8.4:806047-806066 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 804588 | 807659 | 804588 | ID=MS.gene43426 |
| chr8.4 | mRNA | 804588 | 807659 | 804588 | ID=MS.gene43426.t1;Parent=MS.gene43426 |
| chr8.4 | exon | 804588 | 804746 | 804588 | ID=MS.gene43426.t1.exon1;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 804588 | 804746 | 804588 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 805284 | 805349 | 805284 | ID=MS.gene43426.t1.exon2;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 805284 | 805349 | 805284 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 805472 | 805609 | 805472 | ID=MS.gene43426.t1.exon3;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 805472 | 805609 | 805472 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 806411 | 806488 | 806411 | ID=MS.gene43426.t1.exon4;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 806411 | 806488 | 806411 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 806570 | 806620 | 806570 | ID=MS.gene43426.t1.exon5;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 806570 | 806620 | 806570 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 806746 | 806780 | 806746 | ID=MS.gene43426.t1.exon6;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 806746 | 806780 | 806746 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 807101 | 807209 | 807101 | ID=MS.gene43426.t1.exon7;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 807101 | 807209 | 807101 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| chr8.4 | exon | 807456 | 807659 | 807456 | ID=MS.gene43426.t1.exon8;Parent=MS.gene43426.t1 |
| chr8.4 | CDS | 807456 | 807659 | 807456 | ID=cds.MS.gene43426.t1;Parent=MS.gene43426.t1 |
| Gene Sequence |
| Protein sequence |
