AlfalfaGEDB | MS.gene43528

M. sativa cultivar XinJiangDaYe / MS.gene43528

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF04564.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43528.t1	XP_003611551.2	99.3	451	3	0	1	451	1	451	6.70E-250	872.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43528.t1	Q058P4	74.3	451	113	1	1	451	1	448	1.3e-190	667.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43528.t1	G7K2F8	99.3	451	3	0	1	451	1	451	4.8e-250	872.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050838	MS.gene43528	0.836248	1.05E-56	-1.69E-46
MS.gene051234	MS.gene43528	0.818923	1.52E-52	-1.69E-46
MS.gene052335	MS.gene43528	0.805288	1.44E-49	-1.69E-46
MS.gene053143	MS.gene43528	0.823997	1.02E-53	-1.69E-46
MS.gene058638	MS.gene43528	0.806435	8.24E-50	-1.69E-46
MS.gene058639	MS.gene43528	0.807598	4.67E-50	-1.69E-46
MS.gene061006	MS.gene43528	0.827041	1.95E-54	-1.69E-46

Showing 1 to 7 of 7 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43528.t1	MTR_5g015210	99.335	451	3	0	1	451	1	451	0.0	909
MS.gene43528.t1	MTR_1g017770	62.899	407	145	4	51	451	28	434	4.92e-175	497
MS.gene43528.t1	MTR_8g092870	30.653	398	248	10	63	434	5	400	3.91e-39	146
MS.gene43528.t1	MTR_3g095730	29.383	405	254	8	58	434	1	401	2.96e-35	135
MS.gene43528.t1	MTR_4g085720	28.535	389	264	9	55	430	1	388	4.60e-35	135
MS.gene43528.t1	MTR_5g077510	29.925	401	226	11	67	430	35	417	2.68e-33	130
MS.gene43528.t1	MTR_6g071340	28.784	403	236	10	67	430	5	395	5.51e-33	129
MS.gene43528.t1	MTR_5g048050	29.529	403	233	11	67	430	25	415	3.32e-32	127
MS.gene43528.t1	MTR_7g106340	27.500	400	263	8	66	438	7	406	4.40e-31	124
MS.gene43528.t1	MTR_2g087350	28.389	391	258	9	66	438	5	391	3.99e-29	118

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43528.t1	AT3G49810	74.058	451	114	1	1	451	1	448	0.0	669
MS.gene43528.t1	AT5G65920	71.397	451	122	1	1	451	1	444	0.0	649
MS.gene43528.t1	AT5G65920	71.397	451	122	1	1	451	1	444	0.0	649
MS.gene43528.t1	AT3G19380	30.105	382	242	11	57	416	3	381	5.91e-40	149
MS.gene43528.t1	AT1G49780	29.484	407	261	9	66	449	13	416	7.45e-37	140
MS.gene43528.t1	AT2G35930	26.368	402	269	9	63	443	8	403	3.32e-34	132
MS.gene43528.t1	AT5G64660	29.136	405	247	14	63	434	5	402	2.85e-33	130
MS.gene43528.t1	AT3G18710	28.244	393	255	10	67	436	12	400	1.30e-32	128
MS.gene43528.t1	AT3G54850	27.344	384	247	10	67	430	248	619	7.67e-31	125
MS.gene43528.t1	AT5G09800	26.794	418	259	13	60	447	4	404	9.45e-30	120

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Find 98 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACTTTGAATCACAAGA+AGG	0.602714	5.3:+8259135	None:intergenic
AACCTATAAAGTGTTGTGTT+TGG	0.379505	5.3:+8259995	None:intergenic
AAGAGGTCTGAAGATGTTCA+AGG	0.532675	5.3:-8259932	MS.gene43528:CDS
AAGGATAAGAGACATAGCAA+TGG	0.668679	5.3:-8259503	MS.gene43528:CDS
AAGTCTCACCATGATAGGTA+TGG	0.557498	5.3:+8259277	None:intergenic
AAGTCTGTGATTGATGGAGG+TGG	0.645793	5.3:-8259803	MS.gene43528:CDS
AAGTGTTGTGTTTGGAGTGA+TGG	0.479659	5.3:+8260003	None:intergenic
AATCACAAGAAGGAGCTTAG+CGG	0.593465	5.3:+8259145	None:intergenic
ACCATCAAAGAAATCTTTGC+AGG	0.386948	5.3:+8259662	None:intergenic
ACCTGCAAAGATTTCTTTGA+TGG	0.353869	5.3:-8259663	MS.gene43528:CDS

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAACGAATCCAAAACACAA+AGG	+	chr5.3:8260041-8260060	None:intergenic	30.0%
ATTGGACAAATGAAAACACT+TGG	+	chr5.3:8259229-8259248	None:intergenic	30.0%
CAATTAGTTGAATTGTTGTC+TGG	-	chr5.3:8259988-8260007	MS.gene43528:CDS	30.0%
CATTCTCAAATGGTTTAACA+TGG	-	chr5.3:8259312-8259331	MS.gene43528:CDS	30.0%
GTTGATTGAAACGTTAATTG+AGG	-	chr5.3:8259792-8259811	MS.gene43528:CDS	30.0%
TAACGAATCCAAAACACAAA+GGG	+	chr5.3:8260040-8260059	None:intergenic	30.0%
TCAATCCAACCAATAAACTA+TGG	+	chr5.3:8259849-8259868	None:intergenic	30.0%
AACCACTTTGAATCACAAGA+AGG	+	chr5.3:8260251-8260270	None:intergenic	35.0%
AAGGATAAGAGACATAGCAA+TGG	-	chr5.3:8259880-8259899	MS.gene43528:CDS	35.0%
ACCATCAAAGAAATCTTTGC+AGG	+	chr5.3:8259724-8259743	None:intergenic	35.0%

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	8259025	8260380	8259025	ID=MS.gene43528
chr5.3	mRNA	8259025	8260380	8259025	ID=MS.gene43528.t1;Parent=MS.gene43528
chr5.3	exon	8259025	8260380	8259025	ID=MS.gene43528.t1.exon1;Parent=MS.gene43528.t1
chr5.3	CDS	8259025	8260380	8259025	ID=cds.MS.gene43528.t1;Parent=MS.gene43528.t1

Gene Sequence

>MS.gene43528

ATGCCCATGTATCAGCCTTCTAAAAGGGATATGGTTGTTGGGTATGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTTTGGGTGGTGTTGATTGTGGTGGTATTGTAGGAACTGGTGTTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGAGTTATGTGAAGTACCAAGTGTTTTCATTTGTCCAATTTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTATGAGAGGAACAACATTCTCAAATGGTTTAACATGGGACACTTTACTTGTCCTACAACTATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACAACACTTTATAGGTTAATATATACTTGGTTTTCTCAGAAGTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTTAAGGGTCAAGCTAGAGTTCATGCTTTGAAGGAGCTTCATCAAGTTGTGGCTGTTCATGCTACTGCACGTAAGTCTGTGATTGATGGAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGTTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCTAAAAAGAATCTTATGCAACCTGCAAAGATTTCTTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACTAAAATCAGTTGCACGCGGTTGATTGAAACGTTAATTGAGGAGAAAAATTTTCGTTCCGAGATTATCTCCAGCCATAGTTTATTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAGAACAGTGTGCTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTTGAATTGTTGTCTGGTATGGACCATGATTGTTTGGAATTAGCCCTTTGTGTTTTGGATTCGTTATCGTCAATACCTGAAGGCAGGGTAGCTTTGAAGGAATGTGTTAACACCATACCTATCATGGTGAGACTTTTGATGAGGATATCAGAAAGCTGTACTCAGTATGCATTGTCAATTTTGTGGTCTGTTTGCAAGCTCGCACCCGAGGAGTGTTCGTCGATTGCCGTTGATGCAGGGCTTGCCGCTAAGCTCCTTCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAATCTGCTGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACCATCTTCATTTCCAAGTGTAAGCTTACCAGAACCATCCAATGA

Protein sequence

>MS.gene43528.t1

MPMYQPSKRDMVVGYEGGGDGQILDLDTAVKDGVLGGVDCGGIVGTGVVGEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNMGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHQVVAVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKISCTRLIETLIEEKNFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALKECVNTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ