Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43647.t1 | XP_024639923.1 | 71 | 186 | 29 | 3 | 84 | 265 | 166 | 330 | 3.40E-58 | 235.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43647.t1 | G7I5W1 | 72.8 | 173 | 31 | 2 | 106 | 278 | 17 | 173 | 8.8e-56 | 226.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene43647 | 0.937797 | 1.93E-98 | -1.69E-46 |
| MS.gene057814 | MS.gene43647 | 0.942941 | 2.94E-102 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43647.t1 | MTR_1g023240 | 72.832 | 173 | 31 | 2 | 106 | 278 | 17 | 173 | 1.19e-70 | 219 |
| MS.gene43647.t1 | MTR_0029s0140 | 82.517 | 143 | 25 | 0 | 123 | 265 | 241 | 383 | 1.74e-70 | 223 |
| MS.gene43647.t1 | MTR_2g020090 | 69.872 | 156 | 46 | 1 | 110 | 265 | 49 | 203 | 1.79e-70 | 217 |
| MS.gene43647.t1 | MTR_4g017750 | 83.099 | 142 | 20 | 1 | 124 | 265 | 110 | 247 | 9.47e-70 | 217 |
| MS.gene43647.t1 | MTR_3g058800 | 74.468 | 141 | 35 | 1 | 125 | 265 | 10 | 149 | 1.07e-68 | 211 |
| MS.gene43647.t1 | MTR_2g102860 | 82.963 | 135 | 23 | 0 | 131 | 265 | 13 | 147 | 2.87e-68 | 209 |
| MS.gene43647.t1 | MTR_5g080310 | 80.851 | 141 | 23 | 1 | 125 | 265 | 122 | 258 | 8.31e-66 | 207 |
| MS.gene43647.t1 | MTR_6g463490 | 83.186 | 113 | 19 | 0 | 153 | 265 | 3 | 115 | 8.93e-63 | 194 |
| MS.gene43647.t1 | MTR_4g023110 | 73.485 | 132 | 34 | 1 | 123 | 254 | 7 | 137 | 1.11e-61 | 192 |
| MS.gene43647.t1 | MTR_8g027455 | 61.290 | 124 | 46 | 2 | 124 | 246 | 24 | 146 | 6.67e-44 | 154 |
| MS.gene43647.t1 | MTR_1g077650 | 66.346 | 104 | 34 | 1 | 124 | 227 | 46 | 148 | 1.35e-41 | 142 |
| MS.gene43647.t1 | MTR_5g053700 | 81.250 | 48 | 5 | 1 | 217 | 264 | 1 | 44 | 2.86e-18 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 5.1:-52559422 | None:intergenic |
| CAAAACGATCCATTCAAAAT+AGG | 0.196840 | 5.1:+52555502 | MS.gene43647:CDS |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 5.1:-52559614 | None:intergenic |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 5.1:-52559458 | None:intergenic |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 5.1:+52559273 | MS.gene43647:CDS |
| AAAACGATCCATTCAAAATA+GGG | 0.359939 | 5.1:+52555503 | MS.gene43647:CDS |
| TGAGCTGATCGGCACTCTTT+CGG | 0.362965 | 5.1:-52555732 | None:intergenic |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 5.1:-52559465 | None:intergenic |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 5.1:-52559421 | None:intergenic |
| AGGAGCAGCTGGCACAGTTT+AGG | 0.406187 | 5.1:+52559586 | MS.gene43647:CDS |
| AAGATGTCAGGCGCTTTGCC+AGG | 0.410903 | 5.1:-52560100 | None:intergenic |
| CTGTGCTGTTTACGTTCATA+AGG | 0.412350 | 5.1:+52555545 | MS.gene43647:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 5.1:+52559365 | MS.gene43647:CDS |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 5.1:-52559477 | None:intergenic |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 5.1:+52559274 | MS.gene43647:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 5.1:+52559467 | MS.gene43647:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.441120 | 5.1:-52559669 | None:intergenic |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 5.1:-52559457 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 5.1:+52559351 | MS.gene43647:CDS |
| AAGGAAACCTCATACTTTCT+CGG | 0.452585 | 5.1:+52555564 | MS.gene43647:CDS |
| ACCGGATAAGGCTCAACATT+GGG | 0.453953 | 5.1:-52559657 | None:intergenic |
| CAAAATAGGGCTAAAATTGA+AGG | 0.460807 | 5.1:+52555516 | MS.gene43647:CDS |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.464925 | 5.1:-52559500 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 5.1:-52559434 | None:intergenic |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 5.1:+52559357 | MS.gene43647:CDS |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 5.1:-52559569 | None:intergenic |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 5.1:-52557816 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 5.1:-52559398 | None:intergenic |
| TCCCAATGTTGAGCCTTATC+CGG | 0.490951 | 5.1:+52559656 | MS.gene43647:CDS |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.493110 | 5.1:-52557769 | None:intergenic |
| GCCTTGCCAGAGTGGCGACC+AGG | 0.495430 | 5.1:-52555687 | None:intergenic |
| AATCTACCTGGTCGCCACTC+TGG | 0.509346 | 5.1:+52555681 | MS.gene43647:CDS |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 5.1:+52559310 | MS.gene43647:CDS |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 5.1:+52559556 | MS.gene43647:CDS |
| AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 5.1:+52557818 | MS.gene43647:CDS |
| CTGGCAAGGCGAGGGAACAT+TGG | 0.515903 | 5.1:+52555700 | MS.gene43647:CDS |
| ATTTGCCAGGGGTTAACCCC+TGG | 0.519753 | 5.1:+52560082 | MS.gene43647:intron |
| AGATGTCAGGCGCTTTGCCA+GGG | 0.519948 | 5.1:-52560099 | None:intergenic |
| GGCACAGTTTAGGCAAGCCC+AGG | 0.523133 | 5.1:+52559596 | MS.gene43647:CDS |
| ACTTCATTTCGTGTAGAGGT+TGG | 0.523440 | 5.1:-52555615 | None:intergenic |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 5.1:-52559613 | None:intergenic |
| GTCGCCACTCTGGCAAGGCG+AGG | 0.529124 | 5.1:+52555691 | MS.gene43647:CDS |
| ATAAACTTCATTTCGTGTAG+AGG | 0.530633 | 5.1:-52555619 | None:intergenic |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 5.1:-52559433 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 5.1:+52559566 | MS.gene43647:CDS |
| AAGGTCATATGAGGAGCAGC+TGG | 0.546890 | 5.1:+52559575 | MS.gene43647:CDS |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 5.1:+52559466 | MS.gene43647:CDS |
| AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 5.1:-52559266 | None:intergenic |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 5.1:+52557828 | MS.gene43647:CDS |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 5.1:+52559338 | MS.gene43647:CDS |
| TACCGGATAAGGCTCAACAT+TGG | 0.558734 | 5.1:-52559658 | None:intergenic |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 5.1:+52557744 | MS.gene43647:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 5.1:+52559603 | MS.gene43647:CDS |
| TCGCCACTCTGGCAAGGCGA+GGG | 0.561970 | 5.1:+52555692 | MS.gene43647:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 5.1:+52559423 | MS.gene43647:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 5.1:+52559379 | MS.gene43647:CDS |
| ACGCTCGTCGCAGTATTGGC+CGG | 0.570260 | 5.1:-52557812 | None:intergenic |
| GTAATGACCGAGAAAGTATG+AGG | 0.575940 | 5.1:-52555571 | None:intergenic |
| CAAGGCGAGGGAACATTGGA+TGG | 0.583336 | 5.1:+52555704 | MS.gene43647:CDS |
| TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 5.1:+52559247 | MS.gene43647:intron |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 5.1:+52559429 | MS.gene43647:CDS |
| AGACATGAACATGAGCTGAT+CGG | 0.588154 | 5.1:-52555743 | None:intergenic |
| ACCTGGTCGCCACTCTGGCA+AGG | 0.590952 | 5.1:+52555686 | MS.gene43647:CDS |
| AGAGCAATTAACGCAACAGA+TGG | 0.592019 | 5.1:+52559512 | MS.gene43647:CDS |
| TAAAAGCGACGCACTAGTGT+GGG | 0.597782 | 5.1:-52559631 | None:intergenic |
| TTAAAAGCGACGCACTAGTG+TGG | 0.599213 | 5.1:-52559632 | None:intergenic |
| GTTCCCTCGCCTTGCCAGAG+TGG | 0.600171 | 5.1:-52555695 | None:intergenic |
| GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 5.1:+52559260 | MS.gene43647:CDS |
| AAGCGACGCACTAGTGTGGG+AGG | 0.623640 | 5.1:-52559628 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 5.1:+52559383 | MS.gene43647:CDS |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 5.1:+52559339 | MS.gene43647:CDS |
| GATGTCAGGCGCTTTGCCAG+GGG | 0.632664 | 5.1:-52560098 | None:intergenic |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 5.1:+52557743 | MS.gene43647:intron |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 5.1:+52559430 | MS.gene43647:CDS |
| CATGTGACAAATAGGCTAGG+AGG | 0.639349 | 5.1:+52557734 | MS.gene43647:intron |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 5.1:-52559277 | None:intergenic |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 5.1:-52559454 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 5.1:+52559384 | MS.gene43647:CDS |
| GCAACAGATGGCAAGTCAAG+CGG | 0.662263 | 5.1:+52559524 | MS.gene43647:CDS |
| AGCGACGCACTAGTGTGGGA+GGG | 0.667044 | 5.1:-52559627 | None:intergenic |
| TAGAGGTTGGAACAAGCACA+CGG | 0.718767 | 5.1:-52555602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAATAAATAATGTAAT+GGG | - | chr5.1:52555835-52555854 | None:intergenic | 10.0% |
| !! | TAACTTAATAAATAATGTAA+TGG | - | chr5.1:52555836-52555855 | None:intergenic | 10.0% |
| !! | TATTATTCAACATATTTAAA+AGG | - | chr5.1:52557646-52557665 | None:intergenic | 10.0% |
| !!! | GTTTTAGTAATAAAAATTAT+TGG | - | chr5.1:52559888-52559907 | None:intergenic | 10.0% |
| !!! | TCTAACTTTTTTTTTAATTT+TGG | + | chr5.1:52555863-52555882 | MS.gene43647:intron | 10.0% |
| !!! | TTTTGATAATAAACAAAATA+AGG | - | chr5.1:52559140-52559159 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAATTTTGGTATA+GGG | + | chr5.1:52555870-52555889 | MS.gene43647:intron | 10.0% |
| !!! | TTTTTTTTTAATTTTGGTAT+AGG | + | chr5.1:52555869-52555888 | MS.gene43647:intron | 10.0% |
| !! | ACAATCAAAATTAAATGATA+TGG | - | chr5.1:52557689-52557708 | None:intergenic | 15.0% |
| !! | TATTGTCGTATTATTATAAT+TGG | + | chr5.1:52556702-52556721 | MS.gene43647:intron | 15.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | + | chr5.1:52558053-52558072 | MS.gene43647:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | + | chr5.1:52559233-52559252 | MS.gene43647:intron | 15.0% |
| !! | AAAATATTCATGTATGTAAC+CGG | - | chr5.1:52555935-52555954 | None:intergenic | 20.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | - | chr5.1:52558304-52558323 | None:intergenic | 20.0% |
| !! | TAATTCATACTAGTTAATAG+CGG | + | chr5.1:52556817-52556836 | MS.gene43647:intron | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | - | chr5.1:52558967-52558986 | None:intergenic | 20.0% |
| !! | TCATGTCTTAATTAATTGAA+CGG | + | chr5.1:52555758-52555777 | MS.gene43647:intron | 20.0% |
| !! | TGAAAAATTTGAGAAAAATC+AGG | + | chr5.1:52558213-52558232 | MS.gene43647:intron | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | - | chr5.1:52558667-52558686 | None:intergenic | 20.0% |
| !!! | AATACCTTTTATGAAGAATT+TGG | + | chr5.1:52555898-52555917 | MS.gene43647:intron | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | + | chr5.1:52557944-52557963 | MS.gene43647:intron | 20.0% |
| !!! | CTTTTCAACAAATATTAACA+GGG | - | chr5.1:52557209-52557228 | None:intergenic | 20.0% |
| !!! | TGGTTTTAAAAACAAAACAA+GGG | + | chr5.1:52556912-52556931 | MS.gene43647:intron | 20.0% |
| !!! | TTGGTTTTAAAAACAAAACA+AGG | + | chr5.1:52556911-52556930 | MS.gene43647:intron | 20.0% |
| !!! | TTGTTTTGTTTTTAAAACCA+AGG | - | chr5.1:52556912-52556931 | None:intergenic | 20.0% |
| !!! | TTTTATTTCATGTGACAAAT+AGG | + | chr5.1:52557726-52557745 | MS.gene43647:intron | 20.0% |
| ! | AAAACGATCCATTCAAAATA+GGG | + | chr5.1:52555503-52555522 | MS.gene43647:CDS | 25.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | - | chr5.1:52559219-52559238 | None:intergenic | 25.0% |
| ! | AAATATTCATGTATGTAACC+GGG | - | chr5.1:52555934-52555953 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | - | chr5.1:52559121-52559140 | None:intergenic | 25.0% |
| ! | AAGTTACAAACTTGATGAAA+GGG | - | chr5.1:52557100-52557119 | None:intergenic | 25.0% |
| ! | AATTTCAGTTAAGCAAAAGT+TGG | - | chr5.1:52557977-52557996 | None:intergenic | 25.0% |
| ! | ACAAATTCATAAGCAATAAC+AGG | - | chr5.1:52558539-52558558 | None:intergenic | 25.0% |
| ! | AGATTATTTAAGCCAAATGT+TGG | + | chr5.1:52557522-52557541 | MS.gene43647:intron | 25.0% |
| ! | AGGTAGATTAAAAACTGATA+AGG | - | chr5.1:52555670-52555689 | None:intergenic | 25.0% |
| ! | ATAAATTTCATACCCAATCA+TGG | + | chr5.1:52556079-52556098 | MS.gene43647:intron | 25.0% |
| ! | ATCACCAAATTCTTCATAAA+AGG | - | chr5.1:52555905-52555924 | None:intergenic | 25.0% |
| ! | ATTTCAGTTAAGCAAAAGTT+GGG | - | chr5.1:52557976-52557995 | None:intergenic | 25.0% |
| ! | CAAATTCATAAGCAATAACA+GGG | - | chr5.1:52558538-52558557 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | - | chr5.1:52558878-52558897 | None:intergenic | 25.0% |
| ! | GCTTTATCTAATTCATTTCT+AGG | + | chr5.1:52559726-52559745 | MS.gene43647:intron | 25.0% |
| ! | TAATGAAGATGAAAATGATG+AGG | + | chr5.1:52556590-52556609 | MS.gene43647:intron | 25.0% |
| ! | TACGAAGTATGTATGATATT+CGG | - | chr5.1:52556052-52556071 | None:intergenic | 25.0% |
| ! | TATATGATGATTCATGATCT+GGG | + | chr5.1:52557247-52557266 | MS.gene43647:intron | 25.0% |
| ! | TATCATACATACTTCGTAAA+TGG | + | chr5.1:52556054-52556073 | MS.gene43647:intron | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | + | chr5.1:52558661-52558680 | MS.gene43647:intron | 25.0% |
| ! | TTAAAAACTGATAAGGTCAA+CGG | - | chr5.1:52555663-52555682 | None:intergenic | 25.0% |
| !! | ACTTTTGCTTAACTGAAATT+TGG | + | chr5.1:52557977-52557996 | MS.gene43647:intron | 25.0% |
| !! | ATTTCTAGGTTTGTAATTTG+GGG | + | chr5.1:52559740-52559759 | MS.gene43647:intron | 25.0% |
| !! | ATTTTACAATCAGGATAAAG+TGG | + | chr5.1:52556203-52556222 | MS.gene43647:intron | 25.0% |
| !! | CATTTCTAGGTTTGTAATTT+GGG | + | chr5.1:52559739-52559758 | MS.gene43647:intron | 25.0% |
| !! | CCTGTTAATATTTGTTGAAA+AGG | + | chr5.1:52557207-52557226 | MS.gene43647:intron | 25.0% |
| !! | CCTTTTCAACAAATATTAAC+AGG | - | chr5.1:52557210-52557229 | None:intergenic | 25.0% |
| !! | TACATACATGAATATTTTCC+TGG | + | chr5.1:52555937-52555956 | MS.gene43647:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | + | chr5.1:52558932-52558951 | MS.gene43647:intron | 25.0% |
| !! | TCATCATTTTCATCTTCATT+AGG | - | chr5.1:52556591-52556610 | None:intergenic | 25.0% |
| !! | TCATTTCTAGGTTTGTAATT+TGG | + | chr5.1:52559738-52559757 | MS.gene43647:intron | 25.0% |
| !! | TGTTTCTGTCAAAAAAATTG+AGG | + | chr5.1:52558040-52558059 | MS.gene43647:intron | 25.0% |
| !! | TTATCAGTTTTTAATCTACC+TGG | + | chr5.1:52555669-52555688 | MS.gene43647:CDS | 25.0% |
| !! | TTTTCACTAATGATACATAG+CGG | - | chr5.1:52556878-52556897 | None:intergenic | 25.0% |
| !!! | AATTTTAGCCCTATTTTGAA+TGG | - | chr5.1:52555514-52555533 | None:intergenic | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | + | chr5.1:52558262-52558281 | MS.gene43647:intron | 25.0% |
| !!! | TAGTTGATAGATTAGAGTTT+TGG | + | chr5.1:52557616-52557635 | MS.gene43647:intron | 25.0% |
| !!! | TTACGAGTTATTTTACAATC+AGG | + | chr5.1:52556194-52556213 | MS.gene43647:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | + | chr5.1:52559236-52559255 | MS.gene43647:intron | 25.0% |
| AAAACTGAGTACTAAGGTAA+GGG | - | chr5.1:52558696-52558715 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | - | chr5.1:52558494-52558513 | None:intergenic | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | - | chr5.1:52558449-52558468 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | - | chr5.1:52559189-52559208 | None:intergenic | 30.0% | |
| ACATTATGTGCCATGATAAA+CGG | - | chr5.1:52556336-52556355 | None:intergenic | 30.0% | |
| AGTTACAAACTTGATGAAAG+GGG | - | chr5.1:52557099-52557118 | None:intergenic | 30.0% | |
| ATAAACTTCATTTCGTGTAG+AGG | - | chr5.1:52555622-52555641 | None:intergenic | 30.0% | |
| ATTTCTGCAAAACCAACATT+TGG | - | chr5.1:52557537-52557556 | None:intergenic | 30.0% | |
| CAAAACGATCCATTCAAAAT+AGG | + | chr5.1:52555502-52555521 | MS.gene43647:CDS | 30.0% | |
| CAAAATAGGGCTAAAATTGA+AGG | + | chr5.1:52555516-52555535 | MS.gene43647:CDS | 30.0% | |
| CATTACATAGCTCAATTCTT+CGG | - | chr5.1:52558370-52558389 | None:intergenic | 30.0% | |
| GAAGTTACAAACTTGATGAA+AGG | - | chr5.1:52557101-52557120 | None:intergenic | 30.0% | |
| GTATATGATGATTCATGATC+TGG | + | chr5.1:52557246-52557265 | MS.gene43647:intron | 30.0% | |
| TAAAAACTGATAAGGTCAAC+GGG | - | chr5.1:52555662-52555681 | None:intergenic | 30.0% | |
| TACATAAGTATCACAAGAGT+AGG | - | chr5.1:52559793-52559812 | None:intergenic | 30.0% | |
| TGAAAATACAAGATTGTCCT+TGG | + | chr5.1:52556892-52556911 | MS.gene43647:intron | 30.0% | |
| TGAGACTTATGATAAAACTC+TGG | - | chr5.1:52558150-52558169 | None:intergenic | 30.0% | |
| TGATGAGGATTGAAGTTTAT+TGG | + | chr5.1:52559704-52559723 | MS.gene43647:intron | 30.0% | |
| TGCAATCAAAACAAAACCAA+GGG | + | chr5.1:52556416-52556435 | MS.gene43647:intron | 30.0% | |
| TGTCTTAATTAATTGAACGG+AGG | + | chr5.1:52555761-52555780 | MS.gene43647:intron | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | + | chr5.1:52558100-52558119 | MS.gene43647:intron | 30.0% | |
| TGTGTATGTAAAAGGAGTTA+CGG | + | chr5.1:52556131-52556150 | MS.gene43647:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGAT+TGG | + | chr5.1:52558322-52558341 | MS.gene43647:intron | 30.0% | |
| TTATCATGGCACATAATGTT+AGG | + | chr5.1:52556337-52556356 | MS.gene43647:intron | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | - | chr5.1:52558144-52558163 | None:intergenic | 30.0% | |
| TTGCAATCAAAACAAAACCA+AGG | + | chr5.1:52556415-52556434 | MS.gene43647:intron | 30.0% | |
| TTTCAGTTAAGCAAAAGTTG+GGG | - | chr5.1:52557975-52557994 | None:intergenic | 30.0% | |
| TTTGTGTTATAGATGTCTTG+CGG | + | chr5.1:52558554-52558573 | MS.gene43647:intron | 30.0% | |
| ! | ATCATTTTCAGAAAGATGTC+AGG | - | chr5.1:52560115-52560134 | None:intergenic | 30.0% |
| ! | CTCTTGTTCTAGATATGATT+TGG | + | chr5.1:52558006-52558025 | MS.gene43647:intron | 30.0% |
| ! | TACATGAATATTTTCCTGGT+TGG | + | chr5.1:52555941-52555960 | MS.gene43647:intron | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | - | chr5.1:52559055-52559074 | None:intergenic | 30.0% |
| !! | TTTTGTTTCATACTCACTCA+AGG | - | chr5.1:52555797-52555816 | None:intergenic | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | - | chr5.1:52559322-52559341 | None:intergenic | 30.0% |
| !!! | CAAGTCAATGAAAGTGTTTT+TGG | + | chr5.1:52556666-52556685 | MS.gene43647:intron | 30.0% |
| !!! | TCTGGGTATCTTTCTTTTTT+AGG | + | chr5.1:52557264-52557283 | MS.gene43647:intron | 30.0% |
| !!! | TGGTGTTATTTTATTGTGAC+TGG | + | chr5.1:52556223-52556242 | MS.gene43647:intron | 30.0% |
| AAACGAAGGATTTGATCTGT+TGG | - | chr5.1:52555994-52556013 | None:intergenic | 35.0% | |
| AAATTCGTACACAATTTGCC+AGG | + | chr5.1:52560069-52560088 | MS.gene43647:intron | 35.0% | |
| AACACTTGGAAAAAAGTTGC+TGG | + | chr5.1:52559324-52559343 | MS.gene43647:CDS | 35.0% | |
| AACAGTGGTGTGTATGTAAA+AGG | + | chr5.1:52556123-52556142 | MS.gene43647:intron | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | + | chr5.1:52559351-52559370 | MS.gene43647:CDS | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | - | chr5.1:52558963-52558982 | None:intergenic | 35.0% | |
| AAGGAAACCTCATACTTTCT+CGG | + | chr5.1:52555564-52555583 | MS.gene43647:CDS | 35.0% | |
| AATGACAAACAAGACAGAAC+TGG | - | chr5.1:52557918-52557937 | None:intergenic | 35.0% | |
| AATTCGTACACAATTTGCCA+GGG | + | chr5.1:52560070-52560089 | MS.gene43647:intron | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | + | chr5.1:52559310-52559329 | MS.gene43647:CDS | 35.0% | |
| ATTTGCTCAACTTCATCAGT+TGG | - | chr5.1:52556462-52556481 | None:intergenic | 35.0% | |
| CAAAACTGAGTACTAAGGTA+AGG | - | chr5.1:52558697-52558716 | None:intergenic | 35.0% | |
| CAAGCATCTAGATGACAAAA+TGG | + | chr5.1:52557469-52557488 | MS.gene43647:intron | 35.0% | |
| CGAAGAATTGAGCTATGTAA+TGG | + | chr5.1:52558368-52558387 | MS.gene43647:intron | 35.0% | |
| CTAGCACACATAATTATCTC+AGG | - | chr5.1:52558190-52558209 | None:intergenic | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | - | chr5.1:52558145-52558164 | None:intergenic | 35.0% | |
| GAAAATGATGAGGATGATGT+TGG | + | chr5.1:52556600-52556619 | MS.gene43647:intron | 35.0% | |
| GAAACGCACAAAAATAAGTC+CGG | + | chr5.1:52557793-52557812 | MS.gene43647:CDS | 35.0% | |
| GAAGTATGTATGATATTCGG+TGG | - | chr5.1:52556049-52556068 | None:intergenic | 35.0% | |
| GATCAAATCCTTCGTTTAAG+AGG | + | chr5.1:52555997-52556016 | MS.gene43647:intron | 35.0% | |
| GCAATCAAAACAAAACCAAG+GGG | + | chr5.1:52556417-52556436 | MS.gene43647:intron | 35.0% | |
| GGATGAATCAACAGCATTAA+AGG | - | chr5.1:52557188-52557207 | None:intergenic | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | - | chr5.1:52559029-52559048 | None:intergenic | 35.0% | |
| GTTACAAACTTGATGAAAGG+GGG | - | chr5.1:52557098-52557117 | None:intergenic | 35.0% | |
| TATGTAAAAGGAGTTACGGA+AGG | + | chr5.1:52556135-52556154 | MS.gene43647:intron | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | - | chr5.1:52557772-52557791 | None:intergenic | 35.0% | |
| TGAGATAATTGAAGTTGAGC+CGG | + | chr5.1:52556503-52556522 | MS.gene43647:intron | 35.0% | |
| TGTGTATGATCCGTTTATCA+TGG | + | chr5.1:52556323-52556342 | MS.gene43647:intron | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | - | chr5.1:52559503-52559522 | None:intergenic | 35.0% | |
| TTAGGAGTGAACAAAACAGT+AGG | - | chr5.1:52556573-52556592 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | - | chr5.1:52559050-52559069 | None:intergenic | 35.0% | |
| TTTCATACTCACTCAAGGTA+TGG | - | chr5.1:52555792-52555811 | None:intergenic | 35.0% | |
| TTTCATGTGACAAATAGGCT+AGG | + | chr5.1:52557731-52557750 | MS.gene43647:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | + | chr5.1:52559556-52559575 | MS.gene43647:CDS | 35.0% |
| ! | AAGGATTTGATCTGTTGGTT+CGG | - | chr5.1:52555989-52556008 | None:intergenic | 35.0% |
| ! | ACTTTTTGCTTAAACCAACC+AGG | - | chr5.1:52555958-52555977 | None:intergenic | 35.0% |
| ! | CTTGTCGTATCTCTCAATTT+TGG | + | chr5.1:52557855-52557874 | MS.gene43647:intron | 35.0% |
| ! | TACCTTAGTACTCAGTTTTG+TGG | + | chr5.1:52558697-52558716 | MS.gene43647:intron | 35.0% |
| ! | TTTTAATCCGAATTGTGGTC+TGG | + | chr5.1:52557949-52557968 | MS.gene43647:intron | 35.0% |
| !! | ACCTTAGTACTCAGTTTTGT+GGG | + | chr5.1:52558698-52558717 | MS.gene43647:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | - | chr5.1:52559424-52559443 | None:intergenic | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | + | chr5.1:52558507-52558526 | MS.gene43647:intron | 35.0% |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | + | chr5.1:52557918-52557937 | MS.gene43647:intron | 35.0% |
| !! | TTGTTCATTTTTGTCCACCT+AGG | - | chr5.1:52556261-52556280 | None:intergenic | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr5.1:52557890-52557909 | MS.gene43647:intron | 35.0% |
| !!! | TGTTTTGTTTGAAGTGCATC+AGG | - | chr5.1:52557297-52557316 | None:intergenic | 35.0% |
| ACAAGAGTAGGAATTGTGCT+GGG | - | chr5.1:52559781-52559800 | None:intergenic | 40.0% | |
| ACTTCATTTCGTGTAGAGGT+TGG | - | chr5.1:52555618-52555637 | None:intergenic | 40.0% | |
| AGACATGAACATGAGCTGAT+CGG | - | chr5.1:52555746-52555765 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | - | chr5.1:52559280-52559299 | None:intergenic | 40.0% | |
| AGAGAAAGCTGAAGCTTTCT+AGG | - | chr5.1:52556961-52556980 | None:intergenic | 40.0% | |
| AGAGCAATTAACGCAACAGA+TGG | + | chr5.1:52559512-52559531 | MS.gene43647:CDS | 40.0% | |
| ATACCCAATCATGGAGTGAT+GGG | + | chr5.1:52556088-52556107 | MS.gene43647:intron | 40.0% | |
| ATCGAGATCCCCTTCAATAT+TGG | - | chr5.1:52556637-52556656 | None:intergenic | 40.0% | |
| ATCTCAGGAGTTGCATCTTT+AGG | - | chr5.1:52558175-52558194 | None:intergenic | 40.0% | |
| ATTCGTACACAATTTGCCAG+GGG | + | chr5.1:52560071-52560090 | MS.gene43647:intron | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | - | chr5.1:52559214-52559233 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | + | chr5.1:52559423-52559442 | MS.gene43647:CDS | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | - | chr5.1:52558593-52558612 | None:intergenic | 40.0% | |
| GAGAAAGCTGAAGCTTTCTA+GGG | - | chr5.1:52556960-52556979 | None:intergenic | 40.0% | |
| GAGATGCGATTCAAGAATGA+AGG | - | chr5.1:52556989-52557008 | None:intergenic | 40.0% | |
| GAGCTAAACCTCTTAAACGA+AGG | - | chr5.1:52556008-52556027 | None:intergenic | 40.0% | |
| GGGAAGAAGACATATAACAG+TGG | + | chr5.1:52556108-52556127 | MS.gene43647:intron | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | + | chr5.1:52559430-52559449 | MS.gene43647:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | + | chr5.1:52559566-52559585 | MS.gene43647:CDS | 40.0% | |
| TAGTTAATAGCGGCCAATAG+CGG | + | chr5.1:52556827-52556846 | MS.gene43647:intron | 40.0% | |
| TCCCACAAAACTGAGTACTA+AGG | - | chr5.1:52558702-52558721 | None:intergenic | 40.0% | |
| TCGAGATCCCCTTCAATATT+GGG | - | chr5.1:52556636-52556655 | None:intergenic | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | - | chr5.1:52558654-52558673 | None:intergenic | 40.0% | |
| TGCGATTCAAGAATGAAGGT+AGG | - | chr5.1:52556985-52557004 | None:intergenic | 40.0% | |
| TGGAAGAGCCCAATATTGAA+GGG | + | chr5.1:52556625-52556644 | MS.gene43647:intron | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | - | chr5.1:52558641-52558660 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | - | chr5.1:52558486-52558505 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | + | chr5.1:52558641-52558660 | MS.gene43647:intron | 40.0% | |
| TTGGAAGAGCCCAATATTGA+AGG | + | chr5.1:52556624-52556643 | MS.gene43647:intron | 40.0% | |
| ! | CGTTTAAGAGGTTTAGCTCA+AGG | + | chr5.1:52556009-52556028 | MS.gene43647:intron | 40.0% |
| ! | GTAATGACCGAGAAAGTATG+AGG | - | chr5.1:52555574-52555593 | None:intergenic | 40.0% |
| ! | TATTCGGTGGCACATTGTAA+TGG | - | chr5.1:52556036-52556055 | None:intergenic | 40.0% |
| ! | TGATGAGGATGATGTTGGTT+TGG | + | chr5.1:52556605-52556624 | MS.gene43647:intron | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | - | chr5.1:52559425-52559444 | None:intergenic | 40.0% |
| !! | CTGTGCTGTTTACGTTCATA+AGG | + | chr5.1:52555545-52555564 | MS.gene43647:CDS | 40.0% |
| !! | GAATTTGGTGATGATTCACC+CGG | + | chr5.1:52555913-52555932 | MS.gene43647:intron | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | + | chr5.1:52559274-52559293 | MS.gene43647:CDS | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | + | chr5.1:52559357-52559376 | MS.gene43647:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr5.1:52557743-52557762 | MS.gene43647:intron | 45.0% | |
| ACCGGATAAGGCTCAACATT+GGG | - | chr5.1:52559660-52559679 | None:intergenic | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | + | chr5.1:52559338-52559357 | MS.gene43647:CDS | 45.0% | |
| ATTGAAGGGGATCTCGATGA+AGG | + | chr5.1:52556639-52556658 | MS.gene43647:intron | 45.0% | |
| ATTGAAGTTGAGCCGGTTAC+AGG | + | chr5.1:52556510-52556529 | MS.gene43647:intron | 45.0% | |
| CACAAGAGTAGGAATTGTGC+TGG | - | chr5.1:52559782-52559801 | None:intergenic | 45.0% | |
| CATACCCAATCATGGAGTGA+TGG | + | chr5.1:52556087-52556106 | MS.gene43647:intron | 45.0% | |
| CATGTGACAAATAGGCTAGG+AGG | + | chr5.1:52557734-52557753 | MS.gene43647:intron | 45.0% | |
| CCACAATGTTGACATTCGAG+TGG | + | chr5.1:52556287-52556306 | MS.gene43647:intron | 45.0% | |
| CCACTCGAATGTCAACATTG+TGG | - | chr5.1:52556290-52556309 | None:intergenic | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | + | chr5.1:52559429-52559448 | MS.gene43647:CDS | 45.0% | |
| CTTCCCATCACTCCATGATT+GGG | - | chr5.1:52556094-52556113 | None:intergenic | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | - | chr5.1:52558140-52558159 | None:intergenic | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | - | chr5.1:52559572-52559591 | None:intergenic | 45.0% | |
| GCTTGTACTGCATTCTCTAG+AGG | - | chr5.1:52557454-52557473 | None:intergenic | 45.0% | |
| GGAAGAGCCCAATATTGAAG+GGG | + | chr5.1:52556626-52556645 | MS.gene43647:intron | 45.0% | |
| GGATGATGAGGATCATGATG+AGG | + | chr5.1:52559689-52559708 | MS.gene43647:intron | 45.0% | |
| GTAAAAGGAGTTACGGAAGG+AGG | + | chr5.1:52556138-52556157 | MS.gene43647:intron | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | + | chr5.1:52559379-52559398 | MS.gene43647:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | + | chr5.1:52559339-52559358 | MS.gene43647:CDS | 45.0% | |
| TAAAAGCGACGCACTAGTGT+GGG | - | chr5.1:52559634-52559653 | None:intergenic | 45.0% | |
| TACCGGATAAGGCTCAACAT+TGG | - | chr5.1:52559661-52559680 | None:intergenic | 45.0% | |
| TAGAGGTTGGAACAAGCACA+CGG | - | chr5.1:52555605-52555624 | None:intergenic | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | + | chr5.1:52558563-52558582 | MS.gene43647:intron | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | - | chr5.1:52559678-52559697 | None:intergenic | 45.0% | |
| TCTTCCCATCACTCCATGAT+TGG | - | chr5.1:52556095-52556114 | None:intergenic | 45.0% | |
| TGAGAGACTGAGAAGATGAG+AGG | - | chr5.1:52557036-52557055 | None:intergenic | 45.0% | |
| TTAAAAGCGACGCACTAGTG+TGG | - | chr5.1:52559635-52559654 | None:intergenic | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | - | chr5.1:52559401-52559420 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | - | chr5.1:52558394-52558413 | None:intergenic | 45.0% | |
| ! | ATGTATCGTTGTGCCGCTAT+TGG | - | chr5.1:52556843-52556862 | None:intergenic | 45.0% |
| ! | ATTTTTGTCCACCTAGGCGA+GGG | - | chr5.1:52556255-52556274 | None:intergenic | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | + | chr5.1:52559365-52559384 | MS.gene43647:CDS | 45.0% |
| ! | TCCCAATGTTGAGCCTTATC+CGG | + | chr5.1:52559656-52559675 | MS.gene43647:CDS | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+CGG | + | chr5.1:52559247-52559266 | MS.gene43647:intron | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | + | chr5.1:52559273-52559292 | MS.gene43647:CDS | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | - | chr5.1:52559229-52559248 | None:intergenic | 5.0% |
| AAGGTCATATGAGGAGCAGC+TGG | + | chr5.1:52559575-52559594 | MS.gene43647:CDS | 50.0% | |
| AAGTTGAGCCGGTTACAGGT+TGG | + | chr5.1:52556514-52556533 | MS.gene43647:intron | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | - | chr5.1:52558482-52558501 | None:intergenic | 50.0% | |
| AGAAGATGAGAGGAGCCGTT+CGG | - | chr5.1:52557026-52557045 | None:intergenic | 50.0% | |
| AGCGGCACAACGATACATAG+CGG | + | chr5.1:52556845-52556864 | MS.gene43647:intron | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | - | chr5.1:52559437-52559456 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr5.1:52557744-52557763 | MS.gene43647:intron | 50.0% | |
| CAAACTTGATGAAAGGGGGC+CGG | - | chr5.1:52557094-52557113 | None:intergenic | 50.0% | |
| CACTCACTCTCTCAACCGAA+CGG | + | chr5.1:52557008-52557027 | MS.gene43647:intron | 50.0% | |
| CCTTCATCATGACACGTGAG+CGG | + | chr5.1:52558608-52558627 | MS.gene43647:intron | 50.0% | |
| GCAACAGATGGCAAGTCAAG+CGG | + | chr5.1:52559524-52559543 | MS.gene43647:CDS | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | - | chr5.1:52559436-52559455 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | + | chr5.1:52559677-52559696 | MS.gene43647:intron | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | - | chr5.1:52559672-52559691 | None:intergenic | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+GGG | - | chr5.1:52558132-52558151 | None:intergenic | 50.0% | |
| TGAGCTGATCGGCACTCTTT+CGG | - | chr5.1:52555735-52555754 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | + | chr5.1:52559384-52559403 | MS.gene43647:CDS | 50.0% | |
| ! | CATTTTTGTCCACCTAGGCG+AGG | - | chr5.1:52556256-52556275 | None:intergenic | 50.0% |
| ! | GCGTGATGCACAAGTTGAAG+GGG | + | chr5.1:52556536-52556555 | MS.gene43647:intron | 50.0% |
| ! | GGAGGTGCAGATGACTTCTA+TGG | + | chr5.1:52556156-52556175 | MS.gene43647:intron | 50.0% |
| ! | GGCGTGATGCACAAGTTGAA+GGG | + | chr5.1:52556535-52556554 | MS.gene43647:intron | 50.0% |
| ! | TGAGCCTTATCCGGTAGATG+AGG | + | chr5.1:52559665-52559684 | MS.gene43647:intron | 50.0% |
| ! | TGGCGTGATGCACAAGTTGA+AGG | + | chr5.1:52556534-52556553 | MS.gene43647:intron | 50.0% |
| AAATAGCCTCGGCAAGCTGC+CGG | - | chr5.1:52559269-52559288 | None:intergenic | 55.0% | |
| AAGATGTCAGGCGCTTTGCC+AGG | - | chr5.1:52560103-52560122 | None:intergenic | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr5.1:52557818-52557837 | MS.gene43647:CDS | 55.0% | |
| AATCTACCTGGTCGCCACTC+TGG | + | chr5.1:52555681-52555700 | MS.gene43647:CDS | 55.0% | |
| AGATGTCAGGCGCTTTGCCA+GGG | - | chr5.1:52560102-52560121 | None:intergenic | 55.0% | |
| AGGAGCAGCTGGCACAGTTT+AGG | + | chr5.1:52559586-52559605 | MS.gene43647:CDS | 55.0% | |
| ATTTGCCAGGGGTTAACCCC+TGG | + | chr5.1:52560082-52560101 | MS.gene43647:intron | 55.0% | |
| CAACGCAACCACGCAAACGA+GGG | + | chr5.1:52556385-52556404 | MS.gene43647:intron | 55.0% | |
| CAAGGCGAGGGAACATTGGA+TGG | + | chr5.1:52555704-52555723 | MS.gene43647:CDS | 55.0% | |
| CCGCTCACGTGTCATGATGA+AGG | - | chr5.1:52558611-52558630 | None:intergenic | 55.0% | |
| CTCCATGCTCAGATCAGACG+CGG | - | chr5.1:52558736-52558755 | None:intergenic | 55.0% | |
| CTCGTTTGCGTGGTTGCGTT+GGG | - | chr5.1:52556386-52556405 | None:intergenic | 55.0% | |
| CTCTGGTGAGGGAAGGAGTT+AGG | - | chr5.1:52558133-52558152 | None:intergenic | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | + | chr5.1:52559383-52559402 | MS.gene43647:CDS | 55.0% | |
| GCATCACGCCAACCTGTAAC+CGG | - | chr5.1:52556525-52556544 | None:intergenic | 55.0% | |
| GCCTTATCCGGTAGATGAGG+AGG | + | chr5.1:52559668-52559687 | MS.gene43647:intron | 55.0% | |
| GTTGGGGCCAGACCACAATT+CGG | - | chr5.1:52557959-52557978 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr5.1:52557819-52557838 | None:intergenic | 55.0% | |
| TCAGTCTCAATGCGACCCCT+TGG | - | chr5.1:52556435-52556454 | None:intergenic | 55.0% | |
| TCGTTTGCGTGGTTGCGTTG+GGG | - | chr5.1:52556385-52556404 | None:intergenic | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | + | chr5.1:52558474-52558493 | MS.gene43647:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | + | chr5.1:52559603-52559622 | MS.gene43647:CDS | 55.0% | |
| !! | ACTGGTTTGATCCCTCGCCT+AGG | + | chr5.1:52556241-52556260 | MS.gene43647:intron | 55.0% |
| AAGCGACGCACTAGTGTGGG+AGG | - | chr5.1:52559631-52559650 | None:intergenic | 60.0% | |
| ACCACGCAAACGAGGGTGGT+CGG | + | chr5.1:52556392-52556411 | MS.gene43647:intron | 60.0% | |
| ACTTGATGAAAGGGGGCCGG+CGG | - | chr5.1:52557091-52557110 | None:intergenic | 60.0% | |
| AGCCGCGTCTGATCTGAGCA+TGG | + | chr5.1:52558731-52558750 | MS.gene43647:intron | 60.0% | |
| AGCGACGCACTAGTGTGGGA+GGG | - | chr5.1:52559630-52559649 | None:intergenic | 60.0% | |
| CCAACGCAACCACGCAAACG+AGG | + | chr5.1:52556384-52556403 | MS.gene43647:intron | 60.0% | |
| CCTCGTTTGCGTGGTTGCGT+TGG | - | chr5.1:52556387-52556406 | None:intergenic | 60.0% | |
| CGCGTCTGATCTGAGCATGG+AGG | + | chr5.1:52558734-52558753 | MS.gene43647:intron | 60.0% | |
| CGGCGGTTTACGGTGAAGGA+CGG | - | chr5.1:52557071-52557090 | None:intergenic | 60.0% | |
| CGTGGTTGCGTTGGGGGATA+AGG | - | chr5.1:52556378-52556397 | None:intergenic | 60.0% | |
| CGTTTGCGTGGTTGCGTTGG+GGG | - | chr5.1:52556384-52556403 | None:intergenic | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | + | chr5.1:52559466-52559485 | MS.gene43647:CDS | 60.0% | |
| CTGGCAAGGCGAGGGAACAT+TGG | + | chr5.1:52555700-52555719 | MS.gene43647:CDS | 60.0% | |
| CTTTGCCAGGGGTTAACCCC+TGG | - | chr5.1:52560090-52560109 | None:intergenic | 60.0% | |
| GATGTCAGGCGCTTTGCCAG+GGG | - | chr5.1:52560101-52560120 | None:intergenic | 60.0% | |
| GGCACAGTTTAGGCAAGCCC+AGG | + | chr5.1:52559596-52559615 | MS.gene43647:CDS | 60.0% | |
| GGTTTGATCCCTCGCCTAGG+TGG | + | chr5.1:52556244-52556263 | MS.gene43647:intron | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | + | chr5.1:52559467-52559486 | MS.gene43647:CDS | 60.0% | |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | - | chr5.1:52557815-52557834 | None:intergenic | 60.0% |
| ACCGACCACCCTCGTTTGCG+TGG | - | chr5.1:52556396-52556415 | None:intergenic | 65.0% | |
| ACCTGGTCGCCACTCTGGCA+AGG | + | chr5.1:52555686-52555705 | MS.gene43647:CDS | 65.0% | |
| CCTTCACCGTAAACCGCCGC+CGG | + | chr5.1:52557072-52557091 | MS.gene43647:intron | 65.0% | |
| CGCAACCACGCAAACGAGGG+TGG | + | chr5.1:52556388-52556407 | MS.gene43647:intron | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | - | chr5.1:52559468-52559487 | None:intergenic | 65.0% | |
| GTATGACCGGCAGCTTGCCG+AGG | + | chr5.1:52559260-52559279 | MS.gene43647:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | - | chr5.1:52559616-52559635 | None:intergenic | 65.0% | |
| GTTCCCTCGCCTTGCCAGAG+TGG | - | chr5.1:52555698-52555717 | None:intergenic | 65.0% | |
| TCGCCACTCTGGCAAGGCGA+GGG | + | chr5.1:52555692-52555711 | MS.gene43647:CDS | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | - | chr5.1:52559460-52559479 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | - | chr5.1:52559617-52559636 | None:intergenic | 65.0% | |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr5.1:52557828-52557847 | MS.gene43647:CDS | 65.0% |
| CCGGCGGCGGTTTACGGTGA+AGG | - | chr5.1:52557075-52557094 | None:intergenic | 70.0% | |
| CGTCAGCTCAGGCTGCTGGG+AGG | - | chr5.1:52559457-52559476 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | - | chr5.1:52559461-52559480 | None:intergenic | 70.0% | |
| GCCTTGCCAGAGTGGCGACC+AGG | - | chr5.1:52555690-52555709 | None:intergenic | 70.0% | |
| GTCGCCACTCTGGCAAGGCG+AGG | + | chr5.1:52555691-52555710 | MS.gene43647:CDS | 70.0% | |
| TGATGAAAGGGGGCCGGCGG+CGG | - | chr5.1:52557088-52557107 | None:intergenic | 70.0% | |
| AGGGGGCCGGCGGCGGTTTA+CGG | - | chr5.1:52557081-52557100 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52555492 | 52560159 | 52555492 | ID=MS.gene43647 |
| chr5.1 | mRNA | 52555492 | 52560159 | 52555492 | ID=MS.gene43647.t1;Parent=MS.gene43647 |
| chr5.1 | exon | 52555492 | 52555761 | 52555492 | ID=MS.gene43647.t1.exon1;Parent=MS.gene43647.t1 |
| chr5.1 | CDS | 52555492 | 52555761 | 52555492 | ID=cds.MS.gene43647.t1;Parent=MS.gene43647.t1 |
| chr5.1 | exon | 52557748 | 52557849 | 52557748 | ID=MS.gene43647.t1.exon2;Parent=MS.gene43647.t1 |
| chr5.1 | CDS | 52557748 | 52557849 | 52557748 | ID=cds.MS.gene43647.t1;Parent=MS.gene43647.t1 |
| chr5.1 | exon | 52559255 | 52559677 | 52559255 | ID=MS.gene43647.t1.exon3;Parent=MS.gene43647.t1 |
| chr5.1 | CDS | 52559255 | 52559677 | 52559255 | ID=cds.MS.gene43647.t1;Parent=MS.gene43647.t1 |
| chr5.1 | exon | 52560091 | 52560159 | 52560091 | ID=MS.gene43647.t1.exon4;Parent=MS.gene43647.t1 |
| chr5.1 | CDS | 52560091 | 52560159 | 52560091 | ID=cds.MS.gene43647.t1;Parent=MS.gene43647.t1 |
| Gene Sequence |
| Protein sequence |
