Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43694.t1 | XP_024640086.1 | 96.1 | 760 | 27 | 1 | 42 | 798 | 41 | 800 | 0.00E+00 | 1371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43694.t1 | P73625 | 31.4 | 780 | 431 | 14 | 44 | 798 | 8 | 708 | 2.4e-78 | 295.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43694.t1 | G7K652 | 95.9 | 760 | 27 | 2 | 42 | 798 | 41 | 799 | 0.0e+00 | 1365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052870 | MS.gene43694 | 0.836335 | 9.94E-57 | -1.69E-46 |
| MS.gene052872 | MS.gene43694 | 0.833386 | 5.50E-56 | -1.69E-46 |
| MS.gene057926 | MS.gene43694 | 0.817295 | 3.55E-52 | -1.69E-46 |
| MS.gene060832 | MS.gene43694 | 0.834052 | 3.74E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43694.t1 | MTR_5g068600 | 95.262 | 802 | 31 | 4 | 1 | 798 | 1 | 799 | 0.0 | 1538 |
| MS.gene43694.t1 | MTR_5g068600 | 95.714 | 700 | 26 | 2 | 102 | 798 | 1 | 699 | 0.0 | 1358 |
| MS.gene43694.t1 | MTR_4g088920 | 30.253 | 790 | 481 | 21 | 44 | 796 | 33 | 789 | 2.08e-83 | 285 |
| MS.gene43694.t1 | MTR_1g045670 | 32.308 | 195 | 122 | 4 | 432 | 621 | 764 | 953 | 6.13e-21 | 99.4 |
| MS.gene43694.t1 | MTR_7g109470 | 29.963 | 267 | 151 | 10 | 420 | 653 | 1013 | 1276 | 1.17e-17 | 88.6 |
| MS.gene43694.t1 | MTR_4g111945 | 26.159 | 302 | 193 | 7 | 420 | 707 | 649 | 934 | 2.46e-16 | 84.3 |
| MS.gene43694.t1 | MTR_1g100683 | 27.313 | 227 | 132 | 5 | 434 | 631 | 799 | 1021 | 8.58e-16 | 82.4 |
| MS.gene43694.t1 | MTR_1g100683 | 27.313 | 227 | 132 | 5 | 434 | 631 | 799 | 1021 | 8.58e-16 | 82.4 |
| MS.gene43694.t1 | MTR_6g086270 | 27.854 | 219 | 141 | 5 | 411 | 613 | 870 | 1087 | 2.29e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43694.t1 | AT5G54090 | 56.011 | 757 | 312 | 7 | 48 | 795 | 50 | 794 | 0.0 | 820 |
| MS.gene43694.t1 | AT1G65070 | 30.711 | 788 | 442 | 26 | 44 | 798 | 45 | 761 | 7.84e-71 | 249 |
| MS.gene43694.t1 | AT1G65070 | 30.711 | 788 | 442 | 26 | 44 | 798 | 45 | 761 | 9.99e-71 | 249 |
| MS.gene43694.t1 | AT1G65070 | 30.711 | 788 | 442 | 27 | 44 | 798 | 45 | 761 | 1.01e-70 | 249 |
| MS.gene43694.t1 | AT1G65070 | 32.584 | 623 | 346 | 18 | 44 | 650 | 45 | 609 | 1.41e-68 | 239 |
| MS.gene43694.t1 | AT3G24320 | 34.583 | 240 | 138 | 5 | 421 | 642 | 498 | 736 | 2.27e-23 | 106 |
| MS.gene43694.t1 | AT3G24320 | 34.583 | 240 | 138 | 5 | 421 | 642 | 743 | 981 | 2.74e-23 | 106 |
| MS.gene43694.t1 | AT4G25540 | 28.500 | 200 | 131 | 2 | 434 | 622 | 814 | 1012 | 1.90e-16 | 84.7 |
| MS.gene43694.t1 | AT3G24495 | 29.493 | 217 | 124 | 6 | 419 | 611 | 827 | 1038 | 4.85e-16 | 83.6 |
| MS.gene43694.t1 | AT3G18524 | 28.641 | 206 | 134 | 3 | 420 | 613 | 648 | 852 | 6.48e-16 | 82.8 |
| MS.gene43694.t1 | AT4G02070 | 28.511 | 235 | 147 | 6 | 427 | 645 | 1073 | 1302 | 5.16e-15 | 80.1 |
| MS.gene43694.t1 | AT4G02070 | 28.511 | 235 | 147 | 6 | 427 | 645 | 1070 | 1299 | 5.47e-15 | 80.1 |
| MS.gene43694.t1 | AT4G17380 | 29.534 | 193 | 127 | 5 | 425 | 612 | 541 | 729 | 2.58e-13 | 74.3 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAAGTTGTAACCTTTC+TGG | 0.081692 | 5.1:-53271062 | None:intergenic |
| TCGCTGCAACTCATCATTTA+AGG | 0.127126 | 5.1:-53270990 | None:intergenic |
| GTATCGACTACCTGTATTTC+AGG | 0.172713 | 5.1:-53274814 | None:intergenic |
| TTTCATATTATGCAGATTAA+TGG | 0.202732 | 5.1:+53271905 | MS.gene43694:intron |
| CTTCAGTAATAGTTTGTTAA+TGG | 0.218917 | 5.1:-53267931 | None:intergenic |
| TGTTTAGGTACAACAATTAA+TGG | 0.219118 | 5.1:+53270634 | MS.gene43694:intron |
| TTTCTTCGTAAGTTTGATTC+TGG | 0.228833 | 5.1:-53268863 | None:intergenic |
| CTATGAGGCAAATGCTGTTT+TGG | 0.252961 | 5.1:+53269122 | MS.gene43694:CDS |
| TCAGAGTGCTGACACTTTGC+AGG | 0.261548 | 5.1:+53269152 | MS.gene43694:CDS |
| TGATACACGAGAGCTCTTAA+TGG | 0.276229 | 5.1:-53278215 | None:intergenic |
| CCTATCAGGAAGAAATATAT+TGG | 0.282927 | 5.1:-53271966 | None:intergenic |
| TGAACTAATATTTCTCCTTT+TGG | 0.285242 | 5.1:-53278743 | None:intergenic |
| TTCCTTTGCCACCACTTCCT+TGG | 0.285744 | 5.1:+53268073 | MS.gene43694:CDS |
| TCCTTTGCCACCACTTCCTT+GGG | 0.308516 | 5.1:+53268074 | MS.gene43694:CDS |
| TTAAATTTGCCCTATGGCTC+TGG | 0.312716 | 5.1:-53272102 | None:intergenic |
| AGCCAACTTACAAGGTTCTA+TGG | 0.319033 | 5.1:+53275865 | MS.gene43694:CDS |
| GCTACCTATGGTCTTTCATT+TGG | 0.321976 | 5.1:+53271932 | MS.gene43694:CDS |
| TGGTCATATTGATGCTATAA+TGG | 0.326735 | 5.1:+53268956 | MS.gene43694:CDS |
| TTCAGTAATAGTTTGTTAAT+GGG | 0.328978 | 5.1:-53267930 | None:intergenic |
| AATGTAGGTAATTACTGATA+TGG | 0.339126 | 5.1:+53277326 | MS.gene43694:intron |
| GATTCTGCTCGGAAGTTATA+CGG | 0.339322 | 5.1:+53277169 | MS.gene43694:CDS |
| ATGTTCAGCGATCTTCCTTC+TGG | 0.344029 | 5.1:-53278065 | None:intergenic |
| CTATGGCTCTGGAGCAATAA+AGG | 0.344253 | 5.1:-53272091 | None:intergenic |
| TGCACAAACATGGCTCTTGC+AGG | 0.344470 | 5.1:+53268925 | MS.gene43694:CDS |
| CAAAGTGTCATTCCTTGTTA+AGG | 0.350745 | 5.1:-53272011 | None:intergenic |
| CTCATAGCCAGTTACCAGTA+TGG | 0.353942 | 5.1:-53269106 | None:intergenic |
| CTGAATCTGTGCAAATTCCT+TGG | 0.354114 | 5.1:+53274156 | MS.gene43694:CDS |
| AATGGCTTTGCCGTGCTGTA+AGG | 0.358465 | 5.1:-53278197 | None:intergenic |
| GTGTATCTTACAAGAATTGA+TGG | 0.362208 | 5.1:-53270686 | None:intergenic |
| TTAATTACCACTTCTGTAAG+AGG | 0.365219 | 5.1:-53269228 | None:intergenic |
| TGGTTGCCAGGTTGCTGCAC+TGG | 0.368335 | 5.1:+53272465 | MS.gene43694:intron |
| CCAATATATTTCTTCCTGAT+AGG | 0.373935 | 5.1:+53271966 | MS.gene43694:CDS |
| ACCTATGGTCTTTCATTTGG+AGG | 0.384153 | 5.1:+53271935 | MS.gene43694:CDS |
| TTCTTCGTAAGTTTGATTCT+GGG | 0.384225 | 5.1:-53268862 | None:intergenic |
| GTTATAACTGGCCCTAATAC+TGG | 0.389226 | 5.1:+53272550 | MS.gene43694:CDS |
| CTTTATTATCTGCTGCAGTA+TGG | 0.389255 | 5.1:-53278252 | None:intergenic |
| AGCACTAGGAATGTCATTAT+TGG | 0.390539 | 5.1:+53274727 | MS.gene43694:CDS |
| GTAGAAGAGCTATTCCTATC+AGG | 0.394308 | 5.1:-53271980 | None:intergenic |
| TGGTGCATAAGAACTGATTC+TGG | 0.396015 | 5.1:+53270803 | MS.gene43694:CDS |
| ATGGACCGTTACCCGACAAT+AGG | 0.396023 | 5.1:+53272035 | MS.gene43694:CDS |
| CAATAAAGGATGATAAGCTT+TGG | 0.402841 | 5.1:-53272077 | None:intergenic |
| ATGGGACAAACTCTCCGATT+TGG | 0.404765 | 5.1:+53268046 | MS.gene43694:CDS |
| CGCTGCAACTCATCATTTAA+GGG | 0.411337 | 5.1:-53270989 | None:intergenic |
| AGTACAAGTGCTTGAGAGAA+AGG | 0.411413 | 5.1:+53270186 | MS.gene43694:CDS |
| TGAAAAGATACTAGACGGTT+TGG | 0.411744 | 5.1:+53271379 | MS.gene43694:CDS |
| ACTCGGGTTATAGTTATAAC+TGG | 0.413362 | 5.1:+53272538 | MS.gene43694:CDS |
| TAGACTATCGTGAAGTTCTC+TGG | 0.417492 | 5.1:-53278035 | None:intergenic |
| AACTGGTACTGGCTGTGGTT+GGG | 0.420362 | 5.1:-53272494 | None:intergenic |
| AATAAAGGATGATAAGCTTT+GGG | 0.422522 | 5.1:-53272076 | None:intergenic |
| CTATCAGGAAGAAATATATT+GGG | 0.429322 | 5.1:-53271965 | None:intergenic |
| TATACTGTATCACCAACCTT+AGG | 0.430021 | 5.1:-53278674 | None:intergenic |
| GTTGCAGCGAGCAAGAAGTT+TGG | 0.436216 | 5.1:+53271003 | MS.gene43694:CDS |
| AGGAGAACCATACTGGTAAC+TGG | 0.436331 | 5.1:+53269099 | MS.gene43694:CDS |
| GTGCATTTCAACTGCAGCAT+TGG | 0.437777 | 5.1:-53268907 | None:intergenic |
| TTAAGGGTCTATTGTTGTCC+AGG | 0.437835 | 5.1:+53270840 | MS.gene43694:CDS |
| CCATTGTTCACAAGAAGGTC+AGG | 0.438561 | 5.1:+53278149 | MS.gene43694:CDS |
| ACAAGGAATGACACTTTGAA+TGG | 0.439511 | 5.1:+53272016 | MS.gene43694:CDS |
| CAGTCGCTGTCTACATTCTC+TGG | 0.442990 | 5.1:+53274224 | MS.gene43694:CDS |
| CAGGAAGTGAATAATATTGA+TGG | 0.443462 | 5.1:+53270776 | MS.gene43694:intron |
| CCTTCTTTAAATTTGCCCTA+TGG | 0.444660 | 5.1:-53272108 | None:intergenic |
| AACTGAAAACCCTGAAATAC+AGG | 0.447137 | 5.1:+53274804 | MS.gene43694:CDS |
| TGCAATTGTTAGGTTGGAGC+AGG | 0.449743 | 5.1:+53274683 | MS.gene43694:intron |
| CTTTATTGCTCCAGAGCCAT+AGG | 0.451572 | 5.1:+53272092 | MS.gene43694:CDS |
| ACAGTATACGTCTCTTCCCT+TGG | 0.454744 | 5.1:+53278689 | MS.gene43694:CDS |
| TATCGACTACCTGTATTTCA+GGG | 0.454945 | 5.1:-53274813 | None:intergenic |
| AAGTGCAAGGAGAACCATAC+TGG | 0.455808 | 5.1:+53269092 | MS.gene43694:CDS |
| TCTGGACATTGCTGCAGCCT+TGG | 0.459298 | 5.1:-53278125 | None:intergenic |
| GCCAACTTACAAGGTTCTAT+GGG | 0.462665 | 5.1:+53275866 | MS.gene43694:CDS |
| TGTAGGATTGGCTGCTATGA+TGG | 0.462827 | 5.1:+53272597 | MS.gene43694:CDS |
| CAATTAAGCAAGACAAAGAT+TGG | 0.463606 | 5.1:+53269190 | MS.gene43694:CDS |
| CTTCTTGTGAACAATGGATC+TGG | 0.464028 | 5.1:-53278143 | None:intergenic |
| GGCTCTTGCAGGTTGCACTT+TGG | 0.464703 | 5.1:+53268936 | MS.gene43694:CDS |
| TCTGAGGCTGTCGTGATGAA+TGG | 0.467093 | 5.1:-53268015 | None:intergenic |
| TGGACCGTTACCCGACAATA+GGG | 0.468478 | 5.1:+53272036 | MS.gene43694:CDS |
| CCCCATAGAACCTTGTAAGT+TGG | 0.474515 | 5.1:-53275867 | None:intergenic |
| AAATTTGACAAATCATCAAC+AGG | 0.475285 | 5.1:+53278313 | MS.gene43694:CDS |
| ATACTGTATCACCAACCTTA+GGG | 0.489966 | 5.1:-53278673 | None:intergenic |
| CCTAGTGCTGCTCCTTCAAG+TGG | 0.491098 | 5.1:-53274713 | None:intergenic |
| GTTATGAATACCTACCTTGA+GGG | 0.494407 | 5.1:-53268105 | None:intergenic |
| TTTGGTAGTAGTTCAGGAGT+TGG | 0.494704 | 5.1:+53270938 | MS.gene43694:intron |
| CAATATCCATTCCCTATTGT+CGG | 0.494968 | 5.1:-53272047 | None:intergenic |
| ATCAATATAGCCGAGAGACT+TGG | 0.499173 | 5.1:+53277127 | MS.gene43694:CDS |
| TGTAGACAGCGACTGTGATA+AGG | 0.501234 | 5.1:-53274216 | None:intergenic |
| CATACTGGTAACTGGCTATG+AGG | 0.501449 | 5.1:+53269107 | MS.gene43694:CDS |
| CAACTGGTACTGGCTGTGGT+TGG | 0.502088 | 5.1:-53272495 | None:intergenic |
| CATCAGATAATGATCTGCTT+CGG | 0.502816 | 5.1:-53277382 | None:intergenic |
| AATATCCATTCCCTATTGTC+GGG | 0.504208 | 5.1:-53272046 | None:intergenic |
| GGCCTTTGAAAATGCATGTA+TGG | 0.506536 | 5.1:+53275821 | MS.gene43694:CDS |
| AGCAAGAAGTTTGGTAGCAA+AGG | 0.508154 | 5.1:+53271012 | MS.gene43694:CDS |
| ATTAATGGCCGTGCTACCTA+TGG | 0.510110 | 5.1:+53271920 | MS.gene43694:CDS |
| CCATAGGGCAAATTTAAAGA+AGG | 0.511275 | 5.1:+53272108 | MS.gene43694:CDS |
| TTTGGTATCTAATAAAACTC+GGG | 0.513015 | 5.1:+53272522 | MS.gene43694:CDS |
| AAGGTTCTATGGGGCATACC+TGG | 0.513653 | 5.1:+53275876 | MS.gene43694:CDS |
| AAATTTAAAGAAGGTTAAAG+AGG | 0.513673 | 5.1:+53272117 | MS.gene43694:CDS |
| TGATGAAGATGGCTCTATCA+AGG | 0.515649 | 5.1:+53269864 | MS.gene43694:CDS |
| GCTGCTATGATGGCAAAATC+AGG | 0.516602 | 5.1:+53272607 | MS.gene43694:CDS |
| CAGTATACGTCTCTTCCCTT+GGG | 0.518401 | 5.1:+53278690 | MS.gene43694:CDS |
| CGGAGAGTTTGTCCCATTCG+AGG | 0.518915 | 5.1:-53268040 | None:intergenic |
| GGAGAAATATTAGTTCAAGC+TGG | 0.520726 | 5.1:+53278749 | MS.gene43694:CDS |
| TCATTTCATGAGCAGTAATG+AGG | 0.526211 | 5.1:+53275800 | MS.gene43694:intron |
| TTAAAAGTGGACTCACCAAA+AGG | 0.527505 | 5.1:+53278728 | MS.gene43694:CDS |
| GCAGGAACAAACCCACTTGA+AGG | 0.529489 | 5.1:+53274701 | MS.gene43694:CDS |
| CTTGGGTCGTCATGCCCTCA+AGG | 0.530947 | 5.1:+53268091 | MS.gene43694:CDS |
| TCAGTAATAGTTTGTTAATG+GGG | 0.531972 | 5.1:-53267929 | None:intergenic |
| GAATCTGAAGCCAACTTACA+AGG | 0.533683 | 5.1:+53275857 | MS.gene43694:CDS |
| ATGTTATCATCTTGCAATTG+CGG | 0.536078 | 5.1:+53267885 | MS.gene43694:CDS |
| AATTTGTGCTCAGATTCAGC+TGG | 0.543532 | 5.1:+53271343 | MS.gene43694:intron |
| CAGAGTGCTGACACTTTGCA+GGG | 0.545113 | 5.1:+53269153 | MS.gene43694:CDS |
| TTTCATGCCTCTTACAGAAG+TGG | 0.546450 | 5.1:+53269221 | MS.gene43694:CDS |
| TATTATCTGCTGCAGTATGG+AGG | 0.549853 | 5.1:-53278249 | None:intergenic |
| ACGATATGTTTGAAGACTGT+AGG | 0.550635 | 5.1:+53272580 | MS.gene43694:CDS |
| AAGTCAACTGGTACTGGCTG+TGG | 0.551805 | 5.1:-53272499 | None:intergenic |
| CTGTTGTTGTAGATTCTGCT+CGG | 0.555250 | 5.1:+53277158 | MS.gene43694:CDS |
| GGCATGACGACCCAAGGAAG+TGG | 0.556037 | 5.1:-53268084 | None:intergenic |
| CCACTTGAAGGAGCAGCACT+AGG | 0.556390 | 5.1:+53274713 | MS.gene43694:CDS |
| ACAATCAACAAGGCAGTCAC+TGG | 0.558467 | 5.1:+53274571 | MS.gene43694:CDS |
| CAGATCCATTGTTCACAAGA+AGG | 0.559422 | 5.1:+53278144 | MS.gene43694:CDS |
| CAGCCTCAGAGTCCTCGAAT+GGG | 0.560245 | 5.1:+53268028 | MS.gene43694:CDS |
| CATTCCCTATTGTCGGGTAA+CGG | 0.561549 | 5.1:-53272040 | None:intergenic |
| ACTATAGCAACGACTCATCA+TGG | 0.561939 | 5.1:+53274779 | MS.gene43694:CDS |
| AGAGGGCAGTCCAAGTCTCT+CGG | 0.562691 | 5.1:-53277137 | None:intergenic |
| ACCCAAGGAAGTGGTGGCAA+AGG | 0.568153 | 5.1:-53268075 | None:intergenic |
| CGGTTTGGTTCAACTAGATG+TGG | 0.571675 | 5.1:+53271394 | MS.gene43694:CDS |
| CTGCTTCGGATAATAGCTGT+TGG | 0.571755 | 5.1:-53277368 | None:intergenic |
| CTTGCAGATATCCCTAAGGT+TGG | 0.571884 | 5.1:+53278662 | MS.gene43694:intron |
| TTACACTGATCTGTTTCAAG+TGG | 0.572433 | 5.1:-53274247 | None:intergenic |
| TAATCTTGCAGATATCCCTA+AGG | 0.575802 | 5.1:+53278658 | MS.gene43694:intron |
| AAGTTTGGTAGCAAAGGCTG+AGG | 0.576091 | 5.1:+53271018 | MS.gene43694:CDS |
| GCTGTTGGCATTAACCAGAA+AGG | 0.577787 | 5.1:+53271048 | MS.gene43694:CDS |
| AAGTGAATAATATTGATGGC+AGG | 0.578842 | 5.1:+53270780 | MS.gene43694:CDS |
| CCTGACCTTCTTGTGAACAA+TGG | 0.581003 | 5.1:-53278149 | None:intergenic |
| TCATGGAACAGGATCAACTA+TGG | 0.581640 | 5.1:+53268838 | MS.gene43694:intron |
| CTAGTGCTGCTCCTTCAAGT+GGG | 0.581739 | 5.1:-53274712 | None:intergenic |
| TTGGAATCTCTTGCTCATGA+CGG | 0.581994 | 5.1:+53274746 | MS.gene43694:CDS |
| TTTATTGCTCCAGAGCCATA+GGG | 0.585774 | 5.1:+53272093 | MS.gene43694:CDS |
| TTTAAGGGAACAGCAGAAAG+TGG | 0.591563 | 5.1:-53270974 | None:intergenic |
| ATGTTTGAAGACTGTAGGAT+TGG | 0.593640 | 5.1:+53272585 | MS.gene43694:CDS |
| GGCTGAGGCAGATGTGCTGT+TGG | 0.594968 | 5.1:+53271033 | MS.gene43694:CDS |
| ACAGCCTCAGAGTCCTCGAA+TGG | 0.596125 | 5.1:+53268027 | MS.gene43694:CDS |
| CTTGAGGGCATGACGACCCA+AGG | 0.598336 | 5.1:-53268090 | None:intergenic |
| GGCAAAGGAAGAGACCAAAT+CGG | 0.601367 | 5.1:-53268060 | None:intergenic |
| CGTTACCCGACAATAGGGAA+TGG | 0.602350 | 5.1:+53272041 | MS.gene43694:CDS |
| GATATTGAAAAGATACTAGA+CGG | 0.603649 | 5.1:+53271374 | MS.gene43694:CDS |
| AAAGCTTAATCAGAAGTGAA+AGG | 0.610747 | 5.1:+53270657 | MS.gene43694:CDS |
| ATTCAGAAGCAAGAACATAG+AGG | 0.614148 | 5.1:-53274139 | None:intergenic |
| ATGAAAGACCATAGGTAGCA+CGG | 0.614243 | 5.1:-53271928 | None:intergenic |
| CTACTGCTGAATCCTTAACA+AGG | 0.616424 | 5.1:+53271999 | MS.gene43694:CDS |
| AAAACTGAGAGATGTATCCA+AGG | 0.618090 | 5.1:+53278108 | MS.gene43694:CDS |
| TGTCCCATTCGAGGACTCTG+AGG | 0.622741 | 5.1:-53268031 | None:intergenic |
| ATGACGACCCAAGGAAGTGG+TGG | 0.625660 | 5.1:-53268081 | None:intergenic |
| TTCTAGCGCGGAGATTGATG+AGG | 0.626660 | 5.1:+53277195 | MS.gene43694:CDS |
| GCAGAATCTACAACAACAGA+GGG | 0.627034 | 5.1:-53277154 | None:intergenic |
| AAACTGCAATTCAAAGTGCA+AGG | 0.628670 | 5.1:+53269079 | MS.gene43694:CDS |
| ATAGTCTATTGAAAACCAGA+AGG | 0.631248 | 5.1:+53278050 | MS.gene43694:CDS |
| GTTATACGGTTCTTCTAGCG+CGG | 0.633708 | 5.1:+53277183 | MS.gene43694:CDS |
| CATTGTTCACAAGAAGGTCA+GGG | 0.647392 | 5.1:+53278150 | MS.gene43694:CDS |
| TCCTCCAAATGAAAGACCAT+AGG | 0.648761 | 5.1:-53271936 | None:intergenic |
| GCAGTTGAAATGCACAAACA+TGG | 0.652904 | 5.1:+53268915 | MS.gene43694:CDS |
| GTCACTGGTGCTACTAGATG+AGG | 0.654433 | 5.1:+53274586 | MS.gene43694:CDS |
| GCTAAGAAAACCTTACAGCA+CGG | 0.661377 | 5.1:+53278187 | MS.gene43694:CDS |
| GAGACAGAGACAAACCGTGT+TGG | 0.681587 | 5.1:+53267983 | MS.gene43694:CDS |
| AGCAGAATCTACAACAACAG+AGG | 0.682158 | 5.1:-53277155 | None:intergenic |
| AATGGAAGCTGCTACCAACA+CGG | 0.685162 | 5.1:-53267997 | None:intergenic |
| ATAACTGGCCCTAATACTGG+TGG | 0.691845 | 5.1:+53272553 | MS.gene43694:CDS |
| CCAACTTACAAGGTTCTATG+GGG | 0.697470 | 5.1:+53275867 | MS.gene43694:CDS |
| TGAATAATATTGATGGCAGG+TGG | 0.710586 | 5.1:+53270783 | MS.gene43694:CDS |
| TGGCTCTATCAAGGACTCTG+CGG | 0.715249 | 5.1:+53269873 | MS.gene43694:CDS |
| ATATTAAATTACAATCAACA+AGG | 0.731546 | 5.1:+53274561 | MS.gene43694:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 53267885 | 53278817 | 53267885 | ID=MS.gene43694 |
| chr5.1 | mRNA | 53267885 | 53278817 | 53267885 | ID=MS.gene43694.t1;Parent=MS.gene43694 |
| chr5.1 | exon | 53267885 | 53268112 | 53267885 | ID=MS.gene43694.t1.exon1;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53267885 | 53268112 | 53267885 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53268849 | 53268977 | 53268849 | ID=MS.gene43694.t1.exon2;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53268849 | 53268977 | 53268849 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53269075 | 53269242 | 53269075 | ID=MS.gene43694.t1.exon3;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53269075 | 53269242 | 53269075 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53269811 | 53269894 | 53269811 | ID=MS.gene43694.t1.exon4;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53269811 | 53269894 | 53269811 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53270157 | 53270207 | 53270157 | ID=MS.gene43694.t1.exon5;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53270157 | 53270207 | 53270157 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53270641 | 53270697 | 53270641 | ID=MS.gene43694.t1.exon6;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53270641 | 53270697 | 53270641 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53270779 | 53270861 | 53270779 | ID=MS.gene43694.t1.exon7;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53270779 | 53270861 | 53270779 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53270946 | 53271069 | 53270946 | ID=MS.gene43694.t1.exon8;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53270946 | 53271069 | 53270946 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53271356 | 53271415 | 53271356 | ID=MS.gene43694.t1.exon9;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53271356 | 53271415 | 53271356 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53271920 | 53272159 | 53271920 | ID=MS.gene43694.t1.exon10;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53271920 | 53272159 | 53271920 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53272475 | 53272628 | 53272475 | ID=MS.gene43694.t1.exon11;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53272475 | 53272628 | 53272475 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53274138 | 53274265 | 53274138 | ID=MS.gene43694.t1.exon12;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53274138 | 53274265 | 53274138 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53274560 | 53274607 | 53274560 | ID=MS.gene43694.t1.exon13;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53274560 | 53274607 | 53274560 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53274695 | 53274825 | 53274695 | ID=MS.gene43694.t1.exon14;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53274695 | 53274825 | 53274695 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53275815 | 53275897 | 53275815 | ID=MS.gene43694.t1.exon15;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53275815 | 53275897 | 53275815 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53277113 | 53277216 | 53277113 | ID=MS.gene43694.t1.exon16;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53277113 | 53277216 | 53277113 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53277333 | 53277403 | 53277333 | ID=MS.gene43694.t1.exon17;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53277333 | 53277403 | 53277333 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53278030 | 53278334 | 53278030 | ID=MS.gene43694.t1.exon18;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53278030 | 53278334 | 53278030 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| chr5.1 | exon | 53278669 | 53278817 | 53278669 | ID=MS.gene43694.t1.exon19;Parent=MS.gene43694.t1 |
| chr5.1 | CDS | 53278669 | 53278817 | 53278669 | ID=cds.MS.gene43694.t1;Parent=MS.gene43694.t1 |
| Gene Sequence |
| Protein sequence |
