AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057926


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057926.t1 MTR_3g023710 89.231 520 50 3 1 515 1 519 0.0 953
MS.gene057926.t1 MTR_3g023700 83.752 517 82 1 1 515 1 517 0.0 907
MS.gene057926.t1 MTR_3g023690 84.333 517 78 2 1 515 1 516 0.0 902
MS.gene057926.t1 MTR_4g109300 67.939 524 138 2 19 512 19 542 0.0 741
MS.gene057926.t1 MTR_4g109300 63.799 558 138 3 19 512 19 576 0.0 723
MS.gene057926.t1 MTR_4g109300 67.535 499 132 2 19 487 19 517 0.0 700
MS.gene057926.t1 MTR_3g023690 81.769 373 66 1 145 515 56 428 0.0 636
MS.gene057926.t1 MTR_4g109300 66.499 397 103 2 146 512 1 397 0.0 543
MS.gene057926.t1 MTR_5g043710 49.903 515 245 5 1 513 1 504 0.0 520
MS.gene057926.t1 MTR_2g451510 47.259 529 257 6 4 513 12 537 3.36e-167 484
MS.gene057926.t1 MTR_4g116070 49.595 494 241 5 25 513 39 529 5.14e-162 470
MS.gene057926.t1 MTR_4g116040 40.688 349 185 5 167 513 15 343 9.06e-81 255
MS.gene057926.t1 MTR_4g109260 58.974 78 32 0 227 304 59 136 4.28e-28 109
MS.gene057926.t1 MTR_8g091920 30.473 338 138 10 172 488 2 263 1.50e-26 109
MS.gene057926.t1 MTR_8g091915 46.296 54 28 1 218 271 9 61 5.02e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057926.t1 AT5G61250 57.463 536 200 3 3 513 7 539 0.0 645
MS.gene057926.t1 AT5G61250 57.463 536 200 3 3 513 7 539 0.0 645
MS.gene057926.t1 AT5G61250 57.463 536 200 3 3 513 7 539 0.0 645
MS.gene057926.t1 AT5G07830 57.542 537 199 4 3 513 10 543 0.0 644
MS.gene057926.t1 AT5G34940 47.850 535 254 6 2 513 4 536 2.05e-172 497
MS.gene057926.t1 AT5G34940 50.660 379 182 3 2 376 4 381 2.08e-129 382
MS.gene057926.t1 AT5G34940 48.387 403 187 4 130 513 1 401 1.31e-128 380
MS.gene057926.t1 AT5G34940 45.667 300 142 4 233 513 2 299 4.11e-86 268

Find 128 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATACTCTTCCCTGAATT+TGG 0.168980 3.3:-15009680 None:intergenic
ACACATCTAGAATTCGTTTA+AGG 0.175950 3.3:-15007508 None:intergenic
TTCAGGGCCATTGTGATATT+TGG 0.181342 3.3:+15006939 MS.gene057926:intron
CTTCTGAGGTTATTATCTTT+TGG 0.182037 3.3:-15009709 None:intergenic
CCTTGCATTGTTTCTCCTTT+TGG 0.187389 3.3:+15005758 MS.gene057926:CDS
AAGATTGATGCATGGGAATT+TGG 0.194764 3.3:+15007071 MS.gene057926:CDS
ACACTCATCGATTGTAAATT+TGG 0.210549 3.3:+15005935 MS.gene057926:CDS
ACGAAGCTTCTTCAGATTTC+TGG 0.223255 3.3:+15007599 MS.gene057926:CDS
CATTTGCTTTAACAGTTATA+TGG 0.259495 3.3:-15009651 None:intergenic
CAAATGAGGTGGCCAAATTC+AGG 0.267956 3.3:+15009668 MS.gene057926:CDS
ACACATTTGTGAATAGCTTT+TGG 0.310585 3.3:+15007964 MS.gene057926:CDS
CATGGTTTGCTACTAGTAAA+TGG 0.313611 3.3:+15005816 MS.gene057926:CDS
ACAATAAACTTTAGTATTGT+AGG 0.313930 3.3:-15008129 None:intergenic
GCAACGACGGCTATTGTTCT+TGG 0.319707 3.3:+15005910 MS.gene057926:CDS
ACCAGACTAGTAATAATGTT+TGG 0.327295 3.3:+15006985 MS.gene057926:CDS
CAAGCTGGAGCATCAAAGTT+TGG 0.331768 3.3:-15009865 None:intergenic
GACAAAGGATCTATGTATAT+TGG 0.346473 3.3:-15009823 None:intergenic
TCGTAGGTACTTAGATCAAC+TGG 0.348539 3.3:+15008094 MS.gene057926:intron
ACAATACTAAAGTTTATTGT+AGG 0.351194 3.3:+15008132 MS.gene057926:CDS
CTTCTTCAGATTTCTGGTTC+AGG 0.352354 3.3:+15007605 MS.gene057926:CDS
CAACGACGGCTATTGTTCTT+GGG 0.372556 3.3:+15005911 MS.gene057926:CDS
ATAAAATCATAAGCATTTGT+AGG 0.374953 3.3:-15007023 None:intergenic
TATTGTAGGCAGACATTTAA+CGG 0.389954 3.3:+15008146 MS.gene057926:CDS
TGATAGCCCTCAAACCTTTG+AGG 0.392187 3.3:+15006434 MS.gene057926:intron
CCCAAACATTATTACTAGTC+TGG 0.392254 3.3:-15006986 None:intergenic
ACATTTAACGGAGGGAACTA+TGG 0.394051 3.3:+15008158 MS.gene057926:CDS
ATACAGACCTTGGATTGCTT+TGG 0.405849 3.3:-15006105 None:intergenic
TCATTTGCGCTACGATTGAT+TGG 0.419062 3.3:+15005871 MS.gene057926:CDS
TCCACTTTGATCATGCGATT+AGG 0.423414 3.3:-15007831 None:intergenic
CCAGACTAGTAATAATGTTT+GGG 0.424845 3.3:+15006986 MS.gene057926:CDS
CTGATGGGAAAGAAGGTTCT+TGG 0.434566 3.3:+15008374 MS.gene057926:CDS
GTCTTATCCTCAAAGGTTTG+AGG 0.436766 3.3:-15006441 None:intergenic
TATAAAGTACACTGTTTCAA+AGG 0.437179 3.3:+15007043 MS.gene057926:CDS
TACTAGTCTGGTGCTTCCCA+TGG 0.439185 3.3:-15006974 None:intergenic
CATGGGTAGGAGAAGCTGGC+GGG 0.443117 3.3:+15007910 MS.gene057926:CDS
ATAATGTTTGGGAAGGAGCC+TGG 0.451503 3.3:+15006997 MS.gene057926:CDS
TATACGTGCCTGTAGTAGTC+AGG 0.455296 3.3:-15008212 None:intergenic
GTCAGGATTAGGAGTGAGAG+TGG 0.456206 3.3:-15008195 None:intergenic
AAGCTGGAGCATCAAAGTTT+GGG 0.458633 3.3:-15009864 None:intergenic
TTGATGCTCCAGCTTGTGCC+AGG 0.461606 3.3:+15009872 MS.gene057926:CDS
ACTATTGTGGCATCGGCTGA+TGG 0.464644 3.3:+15008358 MS.gene057926:CDS
ACGCCCATTGTTCAAAAGAC+AGG 0.464807 3.3:+15008435 MS.gene057926:CDS
TCTTATCCTCAAAGGTTTGA+GGG 0.467877 3.3:-15006440 None:intergenic
AACTCATCATATATACAACT+TGG 0.470118 3.3:+15007643 MS.gene057926:CDS
TAAAATCATAAGCATTTGTA+GGG 0.476533 3.3:-15007022 None:intergenic
GTAGGAAAATTGAAGTCTAC+TGG 0.478508 3.3:+15006499 MS.gene057926:CDS
TAACTTGAAGAGAGGCCAAA+AGG 0.479441 3.3:-15005773 None:intergenic
TCTGCATGGGTAGGAGAAGC+TGG 0.485954 3.3:+15007906 MS.gene057926:CDS
ATAAAGTACACTGTTTCAAA+GGG 0.487781 3.3:+15007044 MS.gene057926:CDS
CATATATACAACTTGGGCCC+AGG 0.490634 3.3:+15007650 MS.gene057926:CDS
AAATGAGGTGGCCAAATTCA+GGG 0.495682 3.3:+15009669 MS.gene057926:CDS
TGCCTGTAGTAGTCAGGATT+AGG 0.496914 3.3:-15008206 None:intergenic
TTTCAGTGCCTGGCACAAGC+TGG 0.498521 3.3:-15009880 None:intergenic
CTCCTAATCCTGACTACTAC+AGG 0.506485 3.3:+15008204 MS.gene057926:CDS
CGGTCCTTGGGCTTCTGCAT+GGG 0.507100 3.3:+15007893 MS.gene057926:CDS
TTGTGCACTGGATCCGTTGT+TGG 0.509071 3.3:-15009787 None:intergenic
CTATTGTGGCATCGGCTGAT+GGG 0.511834 3.3:+15008359 MS.gene057926:CDS
TTTATCACGTCTTTCGCATA+CGG 0.511957 3.3:-15007485 None:intergenic
GACCTTGGATTGCTTTGGCA+AGG 0.512470 3.3:-15006100 None:intergenic
TGCCATTCAGCAACATGGTA+TGG 0.512493 3.3:-15009732 None:intergenic
ACGGTCCTTGGGCTTCTGCA+TGG 0.512670 3.3:+15007892 MS.gene057926:CDS
GCAGCTACCAGTGGTGGTAT+TGG 0.515860 3.3:+15007933 MS.gene057926:CDS
TTTGGCTTGAATGCGCTCCA+TGG 0.517585 3.3:+15006957 MS.gene057926:CDS
TTCCTTATCATAAAATCCAC+CGG 0.519683 3.3:-15007570 None:intergenic
GGGATACAAGATTGATGCAT+GGG 0.521559 3.3:+15007064 MS.gene057926:CDS
TTGGCTTGAATGCGCTCCAT+GGG 0.529687 3.3:+15006958 MS.gene057926:CDS
CCTTTGAGGATAAGACTTGG+AGG 0.532262 3.3:+15006448 MS.gene057926:CDS
CTGAAAACAGCGCACTATTG+TGG 0.533673 3.3:+15008345 MS.gene057926:intron
TATAACTGTTAAAGCAAATG+AGG 0.534693 3.3:+15009654 MS.gene057926:CDS
TAATGTTTGGGAAGGAGCCT+GGG 0.535436 3.3:+15006998 MS.gene057926:CDS
ATAAGCATTTGTAGGGTCCC+AGG 0.537484 3.3:-15007015 None:intergenic
CGCCCATTGTTCAAAAGACA+GGG 0.537703 3.3:+15008436 MS.gene057926:CDS
TGGATTGCTTTGGCAAGGAT+AGG 0.539512 3.3:-15006095 None:intergenic
AGCCATACCATGTTGCTGAA+TGG 0.540591 3.3:+15009730 MS.gene057926:CDS
TGGAGGTTCTCTGCAAGACC+AGG 0.545315 3.3:+15006465 MS.gene057926:CDS
CCTCCAAGTCTTATCCTCAA+AGG 0.546272 3.3:-15006448 None:intergenic
GGTAATGAGTTAAGCGGTGA+AGG 0.547883 3.3:+15007437 MS.gene057926:intron
GGCGGGGCAGCTACCAGTGG+TGG 0.548053 3.3:+15007927 MS.gene057926:CDS
TTTGCGCTACGATTGATTGG+TGG 0.550188 3.3:+15005874 MS.gene057926:CDS
GCATCGGCTGATGGGAAAGA+AGG 0.553242 3.3:+15008367 MS.gene057926:CDS
GATCTCACATTATTGTGCAC+TGG 0.553447 3.3:-15009799 None:intergenic
ACAGCGCACTATTGTGGCAT+CGG 0.553847 3.3:+15008351 MS.gene057926:intron
GCATGGGTAGGAGAAGCTGG+CGG 0.561478 3.3:+15007909 MS.gene057926:CDS
TTCCTACGTTATACACCACC+TGG 0.561570 3.3:-15006483 None:intergenic
GAAGGCGTTGGTGCATCAGT+CGG 0.563564 3.3:+15007455 MS.gene057926:CDS
GAGTTAAGCGGTGAAGGCGT+TGG 0.566975 3.3:+15007443 MS.gene057926:CDS
ATCTTTACACATGCAAAGGT+GGG 0.567167 3.3:+15006570 MS.gene057926:CDS
GCAACATGGTATGGCTTCTG+AGG 0.570919 3.3:-15009723 None:intergenic
TGAGAGTGGAGGAATTGAGA+AGG 0.571730 3.3:-15008181 None:intergenic
ACCTAATCGCATGATCAAAG+TGG 0.578144 3.3:+15007830 MS.gene057926:CDS
CTAAGTAAAGATATTGAACA+TGG 0.579049 3.3:+15005798 MS.gene057926:CDS
CCTTGGGCTTCTGCATGGGT+AGG 0.579890 3.3:+15007897 MS.gene057926:CDS
GATCTTTACACATGCAAAGG+TGG 0.583363 3.3:+15006569 MS.gene057926:CDS
AGATATACCAATACCACCAC+TGG 0.585262 3.3:-15007940 None:intergenic
AACGACGGCTATTGTTCTTG+GGG 0.589877 3.3:+15005912 MS.gene057926:CDS
CCACCGGGTGCTACAAGTGA+GGG 0.593126 3.3:-15007554 None:intergenic
CGTAGGTACTTAGATCAACT+GGG 0.593139 3.3:+15008095 MS.gene057926:intron
AGGATTAGGAGTGAGAGTGG+AGG 0.593659 3.3:-15008192 None:intergenic
ATGGGTAGGAGAAGCTGGCG+GGG 0.596035 3.3:+15007911 MS.gene057926:CDS
CCGTCGTTGCATTTATCATG+AGG 0.596287 3.3:-15005897 None:intergenic
AAACCTTTGAGGATAAGACT+TGG 0.596572 3.3:+15006445 MS.gene057926:CDS
ATCCTTGCCAAAGCAATCCA+AGG 0.599295 3.3:+15006098 MS.gene057926:CDS
AGGGATACAAGATTGATGCA+TGG 0.601095 3.3:+15007063 MS.gene057926:CDS
ACTAGTAATAATGTTTGGGA+AGG 0.601646 3.3:+15006990 MS.gene057926:CDS
ACTCATCATATATACAACTT+GGG 0.603814 3.3:+15007644 MS.gene057926:CDS
AGGGATCTTTACACATGCAA+AGG 0.605651 3.3:+15006566 MS.gene057926:CDS
TGGAATGCCATTCAGCAACA+TGG 0.608898 3.3:-15009737 None:intergenic
ACAATAAATGCAATGGACAA+AGG 0.611764 3.3:-15009838 None:intergenic
TGGGTACACAATAAATGCAA+TGG 0.613033 3.3:-15009845 None:intergenic
ACTTAGAGTAACTTGAAGAG+AGG 0.614320 3.3:-15005781 None:intergenic
AACTGTTAAAGCAAATGAGG+TGG 0.616456 3.3:+15009657 MS.gene057926:CDS
GTAGGCAGACATTTAACGGA+GGG 0.622201 3.3:+15008150 MS.gene057926:CDS
ATAAACTTTAGTATTGTAGG+TGG 0.622737 3.3:-15008126 None:intergenic
TCCACCGGGTGCTACAAGTG+AGG 0.628017 3.3:-15007555 None:intergenic
CCTACCCATGCAGAAGCCCA+AGG 0.632180 3.3:-15007897 None:intergenic
GCTGGCGGGGCAGCTACCAG+TGG 0.636980 3.3:+15007924 MS.gene057926:CDS
AGGTTCTCTGCAAGACCAGG+TGG 0.641188 3.3:+15006468 MS.gene057926:CDS
CCCTCACTTGTAGCACCCGG+TGG 0.641616 3.3:+15007554 MS.gene057926:CDS
AAAAGGGGATATTCCAACAA+CGG 0.643386 3.3:+15009774 MS.gene057926:CDS
AAACCCTCACTTGTAGCACC+CGG 0.649894 3.3:+15007551 MS.gene057926:CDS
TATGTAGGTAATGAGTTAAG+CGG 0.653581 3.3:+15007431 MS.gene057926:intron
ATGTGTTATACAAGAACTCG+AGG 0.655501 3.3:+15007525 MS.gene057926:CDS
CCTCATGATAAATGCAACGA+CGG 0.659665 3.3:+15005897 MS.gene057926:CDS
TCCTTATCATAAAATCCACC+GGG 0.660783 3.3:-15007569 None:intergenic
CCAAAAGGAGAAACAATGCA+AGG 0.666540 3.3:-15005758 None:intergenic
ATTCAAGCCAAATATCACAA+TGG 0.676549 3.3:-15006946 None:intergenic
TGTAGGCAGACATTTAACGG+AGG 0.691213 3.3:+15008149 MS.gene057926:CDS
GACCAGGTGGTGTATAACGT+AGG 0.736735 3.3:+15006481 MS.gene057926:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATATTATATAATAG+AGG + chr3.3:15008493-15008512 MS.gene057926:intron 10.0%
!!! ATATATTTATTTTTTTTCAC+TGG + chr3.3:15007709-15007728 MS.gene057926:intron 10.0%
!! CACGTATAAATTAAATATTA+CGG + chr3.3:15008227-15008246 MS.gene057926:intron 15.0%
!! GATGATAATAACAAATATAA+TGG - chr3.3:15006639-15006658 None:intergenic 15.0%
!!! ATAATAACAAATATAATGGA+AGG - chr3.3:15006635-15006654 None:intergenic 15.0%
!!! TTCTTTTAAACCAAATAAAA+AGG + chr3.3:15006679-15006698 MS.gene057926:intron 15.0%
!! ACAATAAACTTTAGTATTGT+AGG - chr3.3:15008132-15008151 None:intergenic 20.0%
!! ACAATACTAAAGTTTATTGT+AGG + chr3.3:15008132-15008151 MS.gene057926:CDS 20.0%
!! ACCTAAAGTCTTTAATTATA+AGG - chr3.3:15006729-15006748 None:intergenic 20.0%
!! ACTAAACAGTTATATTTAGT+TGG - chr3.3:15008987-15009006 None:intergenic 20.0%
!! ACTTAGAAATAGATTATGAA+TGG - chr3.3:15007759-15007778 None:intergenic 20.0%
!! ATAAAATCATAAGCATTTGT+AGG - chr3.3:15007026-15007045 None:intergenic 20.0%
!! ATCTTAATTAGTGTAACTAT+GGG + chr3.3:15008663-15008682 MS.gene057926:intron 20.0%
!! CTTATTGTATATACTTATGT+AGG + chr3.3:15007416-15007435 MS.gene057926:intron 20.0%
!! TAAAATCATAAGCATTTGTA+GGG - chr3.3:15007025-15007044 None:intergenic 20.0%
!! TATCTTAATTAGTGTAACTA+TGG + chr3.3:15008662-15008681 MS.gene057926:intron 20.0%
!! TCCTTATAATTAAAGACTTT+AGG + chr3.3:15006725-15006744 MS.gene057926:intron 20.0%
!! TCTTTAATTATAAGGAAGAA+AGG - chr3.3:15006721-15006740 None:intergenic 20.0%
!! TGTTTAGTTAGTTATGTTTA+AGG + chr3.3:15008999-15009018 MS.gene057926:intron 20.0%
!! TTAATAGATATAACTTGATG+AGG + chr3.3:15008267-15008286 MS.gene057926:intron 20.0%
!!! AATCATTTTTTCAATAAGAC+AGG + chr3.3:15006601-15006620 MS.gene057926:CDS 20.0%
!!! ATCATTTTTTCAATAAGACA+GGG + chr3.3:15006602-15006621 MS.gene057926:CDS 20.0%
!!! ATTGTTGTTTTTTATTACAG+TGG + chr3.3:15006357-15006376 MS.gene057926:intron 20.0%
!!! GTTTTTATAACATTGTTGAT+GGG + chr3.3:15006328-15006347 MS.gene057926:intron 20.0%
!!! TAAGTTAATTTCTCTTTTTC+AGG + chr3.3:15007774-15007793 MS.gene057926:intron 20.0%
!!! TAGTTTGTTATTTTCGTTAA+TGG + chr3.3:15007111-15007130 MS.gene057926:intron 20.0%
!!! TGTTTTTATAACATTGTTGA+TGG + chr3.3:15006327-15006346 MS.gene057926:intron 20.0%
!!! TTGAAACTATCCTTTTTATT+TGG - chr3.3:15006692-15006711 None:intergenic 20.0%
! AAAAATCAGAATTCTTCTTC+TGG - chr3.3:15008037-15008056 None:intergenic 25.0%
! AACTCATCATATATACAACT+TGG + chr3.3:15007643-15007662 MS.gene057926:CDS 25.0%
! AATATAATATCCTTCCTAAG+AGG - chr3.3:15008484-15008503 None:intergenic 25.0%
! AATTGAACAATGACTAAAAC+AGG - chr3.3:15006042-15006061 None:intergenic 25.0%
! ACTCAAGTTAACAAAAAAAG+GGG + chr3.3:15009759-15009778 MS.gene057926:CDS 25.0%
! ACTCATCATATATACAACTT+GGG + chr3.3:15007644-15007663 MS.gene057926:CDS 25.0%
! ATAAACTTTAGTATTGTAGG+TGG - chr3.3:15008129-15008148 None:intergenic 25.0%
! ATAAAGTACACTGTTTCAAA+GGG + chr3.3:15007044-15007063 MS.gene057926:CDS 25.0%
! ATGAAATTGGTAAGAAATTC+AGG - chr3.3:15009559-15009578 None:intergenic 25.0%
! CAATGTTATAAAAACAAGAC+CGG - chr3.3:15006323-15006342 None:intergenic 25.0%
! CACTCAAGTTAACAAAAAAA+GGG + chr3.3:15009758-15009777 MS.gene057926:CDS 25.0%
! CATTTGCTTTAACAGTTATA+TGG - chr3.3:15009654-15009673 None:intergenic 25.0%
! CCATTTCAAAAGATGAAAAA+TGG + chr3.3:15006526-15006545 MS.gene057926:CDS 25.0%
! CTAAGTAAAGATATTGAACA+TGG + chr3.3:15005798-15005817 MS.gene057926:CDS 25.0%
! CTTAGAAAGAGGAAAATAAA+AGG - chr3.3:15008005-15008024 None:intergenic 25.0%
! GAAATAGATTATGAATGGTA+TGG - chr3.3:15007754-15007773 None:intergenic 25.0%
! GCAAATATGGTAATTAACTA+TGG + chr3.3:15008608-15008627 MS.gene057926:intron 25.0%
! GGTACATATTTACACAAAAT+GGG - chr3.3:15006840-15006859 None:intergenic 25.0%
! GTACATATTTACACAAAATG+GGG - chr3.3:15006839-15006858 None:intergenic 25.0%
! TAGCAAAAGTCAAAAGATAT+CGG - chr3.3:15009522-15009541 None:intergenic 25.0%
! TAGTTCATATATCCTAACTA+AGG - chr3.3:15009216-15009235 None:intergenic 25.0%
! TATAAAGTACACTGTTTCAA+AGG + chr3.3:15007043-15007062 MS.gene057926:CDS 25.0%
! TATAACTGTTAAAGCAAATG+AGG + chr3.3:15009654-15009673 MS.gene057926:CDS 25.0%
! TATATACAATAAGTCCACAT+CGG - chr3.3:15007409-15007428 None:intergenic 25.0%
! TGGTACATATTTACACAAAA+TGG - chr3.3:15006841-15006860 None:intergenic 25.0%
! TGGTTTAATTGATTAAACCA+CGG - chr3.3:15006272-15006291 None:intergenic 25.0%
! TGTTTGAAAATATTGAATCC+TGG + chr3.3:15009441-15009460 MS.gene057926:intron 25.0%
! TTATCAGATAACAGTTATAG+CGG - chr3.3:15007259-15007278 None:intergenic 25.0%
! TTCGACTTCTATAAATAGTT+GGG - chr3.3:15008924-15008943 None:intergenic 25.0%
!! TAGTTATGTTTAAGGTAACT+AGG + chr3.3:15009007-15009026 MS.gene057926:intron 25.0%
!! TTAACTATGGATTGATTCTT+TGG + chr3.3:15008621-15008640 MS.gene057926:intron 25.0%
!! TTTGCAATTTTATGTTTCCT+TGG + chr3.3:15006004-15006023 MS.gene057926:intron 25.0%
!! TTTTCCTCTTTCTAAGTTTT+AGG + chr3.3:15008009-15008028 MS.gene057926:intron 25.0%
!!! AAGATGAAAAATGGATTGTT+CGG + chr3.3:15006535-15006554 MS.gene057926:CDS 25.0%
!!! CCATTTTTCATCTTTTGAAA+TGG - chr3.3:15006529-15006548 None:intergenic 25.0%
!!! CCGATATTTTAAAAATCGAA+CGG + chr3.3:15006185-15006204 MS.gene057926:intron 25.0%
!!! CCGTTCGATTTTTAAAATAT+CGG - chr3.3:15006188-15006207 None:intergenic 25.0%
AAAAACTGTTGCAATAATGC+AGG - chr3.3:15006774-15006793 None:intergenic 30.0%
AACTTGATGAGGATTTATAG+TGG + chr3.3:15008278-15008297 MS.gene057926:intron 30.0%
AATTGAAGTTTGACACTTTC+AGG + chr3.3:15006922-15006941 MS.gene057926:intron 30.0%
ACAATAAATGCAATGGACAA+AGG - chr3.3:15009841-15009860 None:intergenic 30.0%
ACATATCTAATCCTAGATTC+TGG + chr3.3:15008320-15008339 MS.gene057926:intron 30.0%
ACCAGACTAGTAATAATGTT+TGG + chr3.3:15006985-15007004 MS.gene057926:CDS 30.0%
ACTAGTAATAATGTTTGGGA+AGG + chr3.3:15006990-15007009 MS.gene057926:CDS 30.0%
AGAATTCTCTGAATTCTAAC+AGG - chr3.3:15008843-15008862 None:intergenic 30.0%
AGGTCGAAAAAAGATAAACA+TGG - chr3.3:15008823-15008842 None:intergenic 30.0%
AGTATTCGAGTATTCTTACT+CGG - chr3.3:15009094-15009113 None:intergenic 30.0%
AGTCATTGTTCAATTGAATG+TGG + chr3.3:15006047-15006066 MS.gene057926:intron 30.0%
ATATACAATAAGTCCACATC+GGG - chr3.3:15007408-15007427 None:intergenic 30.0%
ATGTACCAAAACAAAGAACT+TGG + chr3.3:15006853-15006872 MS.gene057926:intron 30.0%
ATTCAAGCCAAATATCACAA+TGG - chr3.3:15006949-15006968 None:intergenic 30.0%
ATTGAAGTTTGACACTTTCA+GGG + chr3.3:15006923-15006942 MS.gene057926:intron 30.0%
CCACTCAAGTTAACAAAAAA+AGG + chr3.3:15009757-15009776 MS.gene057926:CDS 30.0%
CCAGACTAGTAATAATGTTT+GGG + chr3.3:15006986-15007005 MS.gene057926:CDS 30.0%
CTAATTTACTACAACCTCTT+AGG + chr3.3:15008467-15008486 MS.gene057926:intron 30.0%
CTAGGAATAATAGATAGATC+AGG + chr3.3:15009025-15009044 MS.gene057926:intron 30.0%
CTTCGACTTCTATAAATAGT+TGG - chr3.3:15008925-15008944 None:intergenic 30.0%
GAAAGAGGAAAATAAAAGGA+TGG - chr3.3:15008001-15008020 None:intergenic 30.0%
GAATAAAAACTGAACTCATC+AGG - chr3.3:15008521-15008540 None:intergenic 30.0%
GACAAAGGATCTATGTATAT+TGG - chr3.3:15009826-15009845 None:intergenic 30.0%
TAAAATTTCCGCAACTATAG+CGG + chr3.3:15009327-15009346 MS.gene057926:intron 30.0%
TAATGTAGAAATACAGACCT+TGG - chr3.3:15006118-15006137 None:intergenic 30.0%
TATGTAGGTAATGAGTTAAG+CGG + chr3.3:15007431-15007450 MS.gene057926:intron 30.0%
TATTAAACCAATCAGCGAAT+TGG - chr3.3:15006217-15006236 None:intergenic 30.0%
TATTGTAGGCAGACATTTAA+CGG + chr3.3:15008146-15008165 MS.gene057926:CDS 30.0%
TCAAACATTCAATATCAACC+TGG - chr3.3:15009428-15009447 None:intergenic 30.0%
TCAGAGACCATTAAAAAACA+CGG + chr3.3:15007873-15007892 MS.gene057926:CDS 30.0%
TCTTACCAATTTCATTCAAC+AGG + chr3.3:15009564-15009583 MS.gene057926:intron 30.0%
TGCTAGAAATGATGCAAATA+TGG + chr3.3:15008595-15008614 MS.gene057926:intron 30.0%
TTCCTTATCATAAAATCCAC+CGG - chr3.3:15007573-15007592 None:intergenic 30.0%
TTTAGCATTTATCTGTCATC+TGG + chr3.3:15006241-15006260 MS.gene057926:intron 30.0%
! ACACATCTAGAATTCGTTTA+AGG - chr3.3:15007511-15007530 None:intergenic 30.0%
! ACACATTTGTGAATAGCTTT+TGG + chr3.3:15007964-15007983 MS.gene057926:CDS 30.0%
! ACACTCATCGATTGTAAATT+TGG + chr3.3:15005935-15005954 MS.gene057926:CDS 30.0%
! CAACATTGTTCTAAACCAAT+TGG + chr3.3:15007350-15007369 MS.gene057926:intron 30.0%
! GTGGATTTTATGATAAGGAA+TGG + chr3.3:15007573-15007592 MS.gene057926:CDS 30.0%
!! ATGATCCATCATCTTTTTCA+TGG - chr3.3:15009144-15009163 None:intergenic 30.0%
!! TGAATGTGGATTGATTTTTC+AGG + chr3.3:15006061-15006080 MS.gene057926:intron 30.0%
!!! CCTTTTTTTGTTAACTTGAG+TGG - chr3.3:15009760-15009779 None:intergenic 30.0%
!!! CTTCTGAGGTTATTATCTTT+TGG - chr3.3:15009712-15009731 None:intergenic 30.0%
AAAAGGGGATATTCCAACAA+CGG + chr3.3:15009774-15009793 MS.gene057926:CDS 35.0%
AACTGAATAAACTCATCTCC+AGG + chr3.3:15009407-15009426 MS.gene057926:intron 35.0%
AACTGTTAAAGCAAATGAGG+TGG + chr3.3:15009657-15009676 MS.gene057926:CDS 35.0%
AAGATTGATGCATGGGAATT+TGG + chr3.3:15007071-15007090 MS.gene057926:CDS 35.0%
ACTTAGAGTAACTTGAAGAG+AGG - chr3.3:15005784-15005803 None:intergenic 35.0%
ATATTTGAATGACTCGTCGT+AGG + chr3.3:15008078-15008097 MS.gene057926:intron 35.0%
ATCTATAGTTGTCAAAGCCT+AGG + chr3.3:15007138-15007157 MS.gene057926:intron 35.0%
ATCTTTACACATGCAAAGGT+GGG + chr3.3:15006570-15006589 MS.gene057926:CDS 35.0%
ATGTGTTATACAAGAACTCG+AGG + chr3.3:15007525-15007544 MS.gene057926:CDS 35.0%
CATGAACTATTGTTGTCTCT+CGG - chr3.3:15008748-15008767 None:intergenic 35.0%
CATTAAAAAACACGGTCCTT+GGG + chr3.3:15007881-15007900 MS.gene057926:CDS 35.0%
CCCAAACATTATTACTAGTC+TGG - chr3.3:15006989-15007008 None:intergenic 35.0%
CGACGAGTCATTCAAATATT+CGG - chr3.3:15008077-15008096 None:intergenic 35.0%
GGGGAAAACTACAATTAATG+CGG + chr3.3:15009353-15009372 MS.gene057926:intron 35.0%
GTAGGAAAATTGAAGTCTAC+TGG + chr3.3:15006499-15006518 MS.gene057926:CDS 35.0%
GTATTCGAGTATTCTTACTC+GGG - chr3.3:15009093-15009112 None:intergenic 35.0%
GTTTCATAGTTGAGACACAT+AGG + chr3.3:15008702-15008721 MS.gene057926:intron 35.0%
TCAATTAAACCATGACTCAG+AGG + chr3.3:15006280-15006299 MS.gene057926:intron 35.0%
TCCTTATCATAAAATCCACC+GGG - chr3.3:15007572-15007591 None:intergenic 35.0%
TCGAAGATAATTGCAGTTGT+TGG + chr3.3:15008939-15008958 MS.gene057926:intron 35.0%
TCTATAGTTGTCAAAGCCTA+GGG + chr3.3:15007139-15007158 MS.gene057926:intron 35.0%
TCTTATCCTCAAAGGTTTGA+GGG - chr3.3:15006443-15006462 None:intergenic 35.0%
TGGGTACACAATAAATGCAA+TGG - chr3.3:15009848-15009867 None:intergenic 35.0%
TGGTATGGTAGACTAGTATT+TGG - chr3.3:15007739-15007758 None:intergenic 35.0%
TTTACTACAACCTCTTAGGA+AGG + chr3.3:15008471-15008490 MS.gene057926:intron 35.0%
TTTATCACGTCTTTCGCATA+CGG - chr3.3:15007488-15007507 None:intergenic 35.0%
! AAACCTTTGAGGATAAGACT+TGG + chr3.3:15006445-15006464 MS.gene057926:CDS 35.0%
! AATGAACTGATTCAGATGCA+AGG + chr3.3:15008893-15008912 MS.gene057926:intron 35.0%
! ACAACACTGTTTAGACCTTT+TGG - chr3.3:15007174-15007193 None:intergenic 35.0%
! ATGAACTGATTCAGATGCAA+GGG + chr3.3:15008894-15008913 MS.gene057926:intron 35.0%
! GCTATAGTTGCGGAAATTTT+AGG - chr3.3:15009328-15009347 None:intergenic 35.0%
! GGATTGTTCGGATTTTCAAA+GGG + chr3.3:15006547-15006566 MS.gene057926:CDS 35.0%
! TACCCTGTCTTTTGAACAAT+GGG - chr3.3:15008441-15008460 None:intergenic 35.0%
! TGGATTGTTCGGATTTTCAA+AGG + chr3.3:15006546-15006565 MS.gene057926:CDS 35.0%
! TGTTTTCAGAACCAGAATCT+AGG - chr3.3:15008334-15008353 None:intergenic 35.0%
! TTACCCTGTCTTTTGAACAA+TGG - chr3.3:15008442-15008461 None:intergenic 35.0%
!! CAAAGAGTATCTGAGATATC+AGG + chr3.3:15006803-15006822 MS.gene057926:intron 35.0%
!! CATGGTTTGCTACTAGTAAA+TGG + chr3.3:15005816-15005835 MS.gene057926:CDS 35.0%
!! GACATCCAAGTTCTTTGTTT+TGG - chr3.3:15006861-15006880 None:intergenic 35.0%
AAATGAGGTGGCCAAATTCA+GGG + chr3.3:15009669-15009688 MS.gene057926:CDS 40.0%
AACAACAGGGAAGACTAAAG+CGG - chr3.3:15007384-15007403 None:intergenic 40.0%
ACAATAGCACTGTTGCATAG+TGG - chr3.3:15007235-15007254 None:intergenic 40.0%
ACATTTAACGGAGGGAACTA+TGG + chr3.3:15008158-15008177 MS.gene057926:CDS 40.0%
ACCAATTTCATTCAACAGGC+TGG + chr3.3:15009568-15009587 MS.gene057926:intron 40.0%
ACCAGCCTGTTGAATGAAAT+TGG - chr3.3:15009572-15009591 None:intergenic 40.0%
ACCTAATCGCATGATCAAAG+TGG + chr3.3:15007830-15007849 MS.gene057926:CDS 40.0%
ACGAAGCTTCTTCAGATTTC+TGG + chr3.3:15007599-15007618 MS.gene057926:CDS 40.0%
AGAAGAGAAAGTGAGTGTAG+CGG - chr3.3:15006663-15006682 None:intergenic 40.0%
AGAATGACACTGAATCAACC+AGG - chr3.3:15009462-15009481 None:intergenic 40.0%
AGATATACCAATACCACCAC+TGG - chr3.3:15007943-15007962 None:intergenic 40.0%
AGGAGCCATGAAAAAGATGA+TGG + chr3.3:15009136-15009155 MS.gene057926:intron 40.0%
AGGGATACAAGATTGATGCA+TGG + chr3.3:15007063-15007082 MS.gene057926:CDS 40.0%
AGGGATCTTTACACATGCAA+AGG + chr3.3:15006566-15006585 MS.gene057926:CDS 40.0%
ATACAGACCTTGGATTGCTT+TGG - chr3.3:15006108-15006127 None:intergenic 40.0%
CCAAAAGGAGAAACAATGCA+AGG - chr3.3:15005761-15005780 None:intergenic 40.0%
CCATTAAAAAACACGGTCCT+TGG + chr3.3:15007880-15007899 MS.gene057926:CDS 40.0%
CCTCATGATAAATGCAACGA+CGG + chr3.3:15005897-15005916 MS.gene057926:CDS 40.0%
CGTAGGTACTTAGATCAACT+GGG + chr3.3:15008095-15008114 MS.gene057926:intron 40.0%
CTATAGTTGTCAAAGCCTAG+GGG + chr3.3:15007140-15007159 MS.gene057926:intron 40.0%
CTTCATTCTGTTGGGAATGA+CGG - chr3.3:15009279-15009298 None:intergenic 40.0%
GAATTACGATTACGTGTGGT+AGG + chr3.3:15006892-15006911 MS.gene057926:intron 40.0%
GATCTCACATTATTGTGCAC+TGG - chr3.3:15009802-15009821 None:intergenic 40.0%
GATCTTTACACATGCAAAGG+TGG + chr3.3:15006569-15006588 MS.gene057926:CDS 40.0%
GGCACCTAAAACTTAGAAAG+AGG - chr3.3:15008016-15008035 None:intergenic 40.0%
GGGATACAAGATTGATGCAT+GGG + chr3.3:15007064-15007083 MS.gene057926:CDS 40.0%
GGTAGAATTACGATTACGTG+TGG + chr3.3:15006888-15006907 MS.gene057926:intron 40.0%
GTCTTATCCTCAAAGGTTTG+AGG - chr3.3:15006444-15006463 None:intergenic 40.0%
GTGATACTCTTCCCTGAATT+TGG - chr3.3:15009683-15009702 None:intergenic 40.0%
GTGTTGCAGACTAACAATGT+AGG + chr3.3:15009299-15009318 MS.gene057926:intron 40.0%
TAACTTGAAGAGAGGCCAAA+AGG - chr3.3:15005776-15005795 None:intergenic 40.0%
TCAGAGGCTTCAAATCTAGT+GGG + chr3.3:15009182-15009201 MS.gene057926:intron 40.0%
TCATTTGCGCTACGATTGAT+TGG + chr3.3:15005871-15005890 MS.gene057926:CDS 40.0%
TCCACTTTGATCATGCGATT+AGG - chr3.3:15007834-15007853 None:intergenic 40.0%
TCGTAGGTACTTAGATCAAC+TGG + chr3.3:15008094-15008113 MS.gene057926:intron 40.0%
TGCAACACCTTCATTCTGTT+GGG - chr3.3:15009287-15009306 None:intergenic 40.0%
TTCAGGGCCATTGTGATATT+TGG + chr3.3:15006939-15006958 MS.gene057926:intron 40.0%
! AAGCTGGAGCATCAAAGTTT+GGG - chr3.3:15009867-15009886 None:intergenic 40.0%
! GATAACATTTTGCTCGCGTA+TGG + chr3.3:15007274-15007293 MS.gene057926:intron 40.0%
! GTATTTTTCCCCAAAACCAC+TGG + chr3.3:15008794-15008813 MS.gene057926:intron 40.0%
!! ACCCGGTGGATTTTATGATA+AGG + chr3.3:15007568-15007587 MS.gene057926:CDS 40.0%
!! CCTTGCATTGTTTCTCCTTT+TGG + chr3.3:15005758-15005777 MS.gene057926:CDS 40.0%
!! CTTCTTCAGATTTCTGGTTC+AGG + chr3.3:15007605-15007624 MS.gene057926:CDS 40.0%
!!! CCAAGGACCGTGTTTTTTAA+TGG - chr3.3:15007883-15007902 None:intergenic 40.0%
AAACCAATCAGCGAATTGGC+TGG - chr3.3:15006213-15006232 None:intergenic 45.0%
AACGACGGCTATTGTTCTTG+GGG + chr3.3:15005912-15005931 MS.gene057926:CDS 45.0%
AAGATAAACATGGCTGCCAG+TGG - chr3.3:15008813-15008832 None:intergenic 45.0%
AATACTCCCTTGCAAGCTCA+AGG + chr3.3:15009108-15009127 MS.gene057926:intron 45.0%
ACGCCCATTGTTCAAAAGAC+AGG + chr3.3:15008435-15008454 MS.gene057926:CDS 45.0%
AGAACTTGGATGTCTGTGTC+AGG + chr3.3:15006867-15006886 MS.gene057926:intron 45.0%
ATAAGCATTTGTAGGGTCCC+AGG - chr3.3:15007018-15007037 None:intergenic 45.0%
ATAATGTTTGGGAAGGAGCC+TGG + chr3.3:15006997-15007016 MS.gene057926:CDS 45.0%
ATCCTTGCCAAAGCAATCCA+AGG + chr3.3:15006098-15006117 MS.gene057926:CDS 45.0%
ATGTGAGTGACAAGCAAACC+TGG - chr3.3:15007671-15007690 None:intergenic 45.0%
CAAATGAGGTGGCCAAATTC+AGG + chr3.3:15009668-15009687 MS.gene057926:CDS 45.0%
CAACGACGGCTATTGTTCTT+GGG + chr3.3:15005911-15005930 MS.gene057926:CDS 45.0%
CAGCAGTCAAGAACATCACT+AGG - chr3.3:15008775-15008794 None:intergenic 45.0%
CATATATACAACTTGGGCCC+AGG + chr3.3:15007650-15007669 MS.gene057926:CDS 45.0%
CCGTCGTTGCATTTATCATG+AGG - chr3.3:15005900-15005919 None:intergenic 45.0%
CGCCCATTGTTCAAAAGACA+GGG + chr3.3:15008436-15008455 MS.gene057926:CDS 45.0%
CGTCATTCCCAACAGAATGA+AGG + chr3.3:15009277-15009296 MS.gene057926:intron 45.0%
CTCAGAGGCTTCAAATCTAG+TGG + chr3.3:15009181-15009200 MS.gene057926:intron 45.0%
CTCCTAATCCTGACTACTAC+AGG + chr3.3:15008204-15008223 MS.gene057926:CDS 45.0%
CTGAAAACAGCGCACTATTG+TGG + chr3.3:15008345-15008364 MS.gene057926:intron 45.0%
CTGATGGGAAAGAAGGTTCT+TGG + chr3.3:15008374-15008393 MS.gene057926:CDS 45.0%
CTGCAACACCTTCATTCTGT+TGG - chr3.3:15009288-15009307 None:intergenic 45.0%
GGTAATGAGTTAAGCGGTGA+AGG + chr3.3:15007437-15007456 MS.gene057926:intron 45.0%
GTAGGCAGACATTTAACGGA+GGG + chr3.3:15008150-15008169 MS.gene057926:CDS 45.0%
TAATGTTTGGGAAGGAGCCT+GGG + chr3.3:15006998-15007017 MS.gene057926:CDS 45.0%
TATACGTGCCTGTAGTAGTC+AGG - chr3.3:15008215-15008234 None:intergenic 45.0%
TGAGAGTGGAGGAATTGAGA+AGG - chr3.3:15008184-15008203 None:intergenic 45.0%
TGATAGCCCTCAAACCTTTG+AGG + chr3.3:15006434-15006453 MS.gene057926:intron 45.0%
TGCCTGTAGTAGTCAGGATT+AGG - chr3.3:15008209-15008228 None:intergenic 45.0%
TGGATCATACACACTGAGCT+TGG + chr3.3:15009156-15009175 MS.gene057926:intron 45.0%
TGGATTGCTTTGGCAAGGAT+AGG - chr3.3:15006098-15006117 None:intergenic 45.0%
TGGGCGTAAGTGCGTAAAAA+TGG - chr3.3:15008422-15008441 None:intergenic 45.0%
TGTAGGCAGACATTTAACGG+AGG + chr3.3:15008149-15008168 MS.gene057926:CDS 45.0%
TGTGAGTGACAAGCAAACCT+GGG - chr3.3:15007670-15007689 None:intergenic 45.0%
TTCCTACGTTATACACCACC+TGG - chr3.3:15006486-15006505 None:intergenic 45.0%
TTTGCGCTACGATTGATTGG+TGG + chr3.3:15005874-15005893 MS.gene057926:CDS 45.0%
! AAAGCGGTCTGAAGTCCAAT+TGG - chr3.3:15007368-15007387 None:intergenic 45.0%
! AACATTTTGCTCGCGTATGG+CGG + chr3.3:15007277-15007296 MS.gene057926:intron 45.0%
! AACTGATTCAGATGCAAGGG+AGG + chr3.3:15008897-15008916 MS.gene057926:intron 45.0%
! CAAGCTGGAGCATCAAAGTT+TGG - chr3.3:15009868-15009887 None:intergenic 45.0%
! CCTCCAAGTCTTATCCTCAA+AGG - chr3.3:15006451-15006470 None:intergenic 45.0%
! CCTTTGAGGATAAGACTTGG+AGG + chr3.3:15006448-15006467 MS.gene057926:CDS 45.0%
!! ACAGGTTAGCTTGCTTTCCA+AGG - chr3.3:15006024-15006043 None:intergenic 45.0%
AAACCCTCACTTGTAGCACC+CGG + chr3.3:15007551-15007570 MS.gene057926:CDS 50.0%
ACACTGAGCTTGGATCTCAG+AGG + chr3.3:15009166-15009185 MS.gene057926:intron 50.0%
ACAGCGCACTATTGTGGCAT+CGG + chr3.3:15008351-15008370 MS.gene057926:intron 50.0%
AGGATTAGGAGTGAGAGTGG+AGG - chr3.3:15008195-15008214 None:intergenic 50.0%
AGTCCACATCGGGTAACAAC+AGG - chr3.3:15007398-15007417 None:intergenic 50.0%
CTAGGGGTTCATGGTCCAAA+AGG + chr3.3:15007156-15007175 MS.gene057926:intron 50.0%
GAACCAGCCAATTCGCTGAT+TGG + chr3.3:15006207-15006226 MS.gene057926:intron 50.0%
GACCAGGTGGTGTATAACGT+AGG + chr3.3:15006481-15006500 MS.gene057926:CDS 50.0%
GACCTTGGATTGCTTTGGCA+AGG - chr3.3:15006103-15006122 None:intergenic 50.0%
GCAACATGGTATGGCTTCTG+AGG - chr3.3:15009726-15009745 None:intergenic 50.0%
GCAACGACGGCTATTGTTCT+TGG + chr3.3:15005910-15005929 MS.gene057926:CDS 50.0%
GTCAGGATTAGGAGTGAGAG+TGG - chr3.3:15008198-15008217 None:intergenic 50.0%
GTCCACATCGGGTAACAACA+GGG - chr3.3:15007397-15007416 None:intergenic 50.0%
TACCCACCTTGAGCTTGCAA+GGG - chr3.3:15009117-15009136 None:intergenic 50.0%
TGGGAGAGAGAGCCTTAGTT+AGG + chr3.3:15009201-15009220 MS.gene057926:intron 50.0%
TGTCAAAGCCTAGGGGTTCA+TGG + chr3.3:15007147-15007166 MS.gene057926:intron 50.0%
TTCCCTGTTGTTACCCGATG+TGG + chr3.3:15007392-15007411 MS.gene057926:intron 50.0%
TTCCGCAACTATAGCGGCTA+GGG + chr3.3:15009333-15009352 MS.gene057926:intron 50.0%
TTGTGCACTGGATCCGTTGT+TGG - chr3.3:15009790-15009809 None:intergenic 50.0%
TTTCCGCAACTATAGCGGCT+AGG + chr3.3:15009332-15009351 MS.gene057926:intron 50.0%
! AACATGGCTGCCAGTGGTTT+TGG - chr3.3:15008807-15008826 None:intergenic 50.0%
! ACATGGCTGCCAGTGGTTTT+GGG - chr3.3:15008806-15008825 None:intergenic 50.0%
! CTTTTGGACCATGAACCCCT+AGG - chr3.3:15007158-15007177 None:intergenic 50.0%
! TACTAGTCTGGTGCTTCCCA+TGG - chr3.3:15006977-15006996 None:intergenic 50.0%
! TCTGTCATCTGGTTCAACCG+TGG + chr3.3:15006252-15006271 MS.gene057926:intron 50.0%
! TTGGCTTGAATGCGCTCCAT+GGG + chr3.3:15006958-15006977 MS.gene057926:CDS 50.0%
!! ACTATTGTGGCATCGGCTGA+TGG + chr3.3:15008358-15008377 MS.gene057926:CDS 50.0%
!! CTATTGTGGCATCGGCTGAT+GGG + chr3.3:15008359-15008378 MS.gene057926:CDS 50.0%
!! TTTGGCTTGAATGCGCTCCA+TGG + chr3.3:15006957-15006976 MS.gene057926:CDS 50.0%
ACTCCCTTGCAAGCTCAAGG+TGG + chr3.3:15009111-15009130 MS.gene057926:intron 55.0%
AGGTTCTCTGCAAGACCAGG+TGG + chr3.3:15006468-15006487 MS.gene057926:CDS 55.0%
CCATGACTCAGAGGTCTCAG+CGG + chr3.3:15006289-15006308 MS.gene057926:intron 55.0%
CTACCCACCTTGAGCTTGCA+AGG - chr3.3:15009118-15009137 None:intergenic 55.0%
CTCCCTTGCAAGCTCAAGGT+GGG + chr3.3:15009112-15009131 MS.gene057926:intron 55.0%
CTTGCAAGCTCAAGGTGGGT+AGG + chr3.3:15009116-15009135 MS.gene057926:intron 55.0%
GCAGCTACCAGTGGTGGTAT+TGG + chr3.3:15007933-15007952 MS.gene057926:CDS 55.0%
GGTCTCAGCGGTTTGATCTC+CGG + chr3.3:15006301-15006320 MS.gene057926:intron 55.0%
TCCCCTAGCCGCTATAGTTG+CGG - chr3.3:15009338-15009357 None:intergenic 55.0%
TCCGCAACTATAGCGGCTAG+GGG + chr3.3:15009334-15009353 MS.gene057926:intron 55.0%
TCTGCATGGGTAGGAGAAGC+TGG + chr3.3:15007906-15007925 MS.gene057926:CDS 55.0%
TGGAGGTTCTCTGCAAGACC+AGG + chr3.3:15006465-15006484 MS.gene057926:CDS 55.0%
TTGATGCTCCAGCTTGTGCC+AGG + chr3.3:15009872-15009891 MS.gene057926:CDS 55.0%
! GAGTTAAGCGGTGAAGGCGT+TGG + chr3.3:15007443-15007462 MS.gene057926:CDS 55.0%
!! CATGGCTGCCAGTGGTTTTG+GGG - chr3.3:15008805-15008824 None:intergenic 55.0%
!! GAAGGCGTTGGTGCATCAGT+CGG + chr3.3:15007455-15007474 MS.gene057926:CDS 55.0%
!! GCATCGGCTGATGGGAAAGA+AGG + chr3.3:15008367-15008386 MS.gene057926:CDS 55.0%
ACGGTCCTTGGGCTTCTGCA+TGG + chr3.3:15007892-15007911 MS.gene057926:CDS 60.0%
ATGGGTAGGAGAAGCTGGCG+GGG + chr3.3:15007911-15007930 MS.gene057926:CDS 60.0%
CATGGGTAGGAGAAGCTGGC+GGG + chr3.3:15007910-15007929 MS.gene057926:CDS 60.0%
CCGCTGAGACCTCTGAGTCA+TGG - chr3.3:15006292-15006311 None:intergenic 60.0%
CCTACCCATGCAGAAGCCCA+AGG - chr3.3:15007900-15007919 None:intergenic 60.0%
CCTTGGGCTTCTGCATGGGT+AGG + chr3.3:15007897-15007916 MS.gene057926:CDS 60.0%
CGGTCCTTGGGCTTCTGCAT+GGG + chr3.3:15007893-15007912 MS.gene057926:CDS 60.0%
GCATGGGTAGGAGAAGCTGG+CGG + chr3.3:15007909-15007928 MS.gene057926:CDS 60.0%
! CCACCGGGTGCTACAAGTGA+GGG - chr3.3:15007557-15007576 None:intergenic 60.0%
! TCCACCGGGTGCTACAAGTG+AGG - chr3.3:15007558-15007577 None:intergenic 60.0%
CCCTCACTTGTAGCACCCGG+TGG + chr3.3:15007554-15007573 MS.gene057926:CDS 65.0%
GCTGGCGGGGCAGCTACCAG+TGG + chr3.3:15007924-15007943 MS.gene057926:CDS 75.0%
GGCGGGGCAGCTACCAGTGG+TGG + chr3.3:15007927-15007946 MS.gene057926:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 15005747 15009900 15005747 ID=MS.gene057926
chr3.3 mRNA 15005747 15009900 15005747 ID=MS.gene057926.t1;Parent=MS.gene057926
chr3.3 exon 15005747 15005956 15005747 ID=MS.gene057926.t1.exon1;Parent=MS.gene057926.t1
chr3.3 CDS 15005747 15005956 15005747 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15006083 15006119 15006083 ID=MS.gene057926.t1.exon2;Parent=MS.gene057926.t1
chr3.3 CDS 15006083 15006119 15006083 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15006440 15006623 15006440 ID=MS.gene057926.t1.exon3;Parent=MS.gene057926.t1
chr3.3 CDS 15006440 15006623 15006440 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15006944 15007092 15006944 ID=MS.gene057926.t1.exon4;Parent=MS.gene057926.t1
chr3.3 CDS 15006944 15007092 15006944 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15007438 15007671 15007438 ID=MS.gene057926.t1.exon5;Parent=MS.gene057926.t1
chr3.3 CDS 15007438 15007671 15007438 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15007796 15007985 15007796 ID=MS.gene057926.t1.exon6;Parent=MS.gene057926.t1
chr3.3 CDS 15007796 15007985 15007796 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15008100 15008225 15008100 ID=MS.gene057926.t1.exon7;Parent=MS.gene057926.t1
chr3.3 CDS 15008100 15008225 15008100 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15008355 15008457 15008355 ID=MS.gene057926.t1.exon8;Parent=MS.gene057926.t1
chr3.3 CDS 15008355 15008457 15008355 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
chr3.3 exon 15009586 15009900 15009586 ID=MS.gene057926.t1.exon9;Parent=MS.gene057926.t1
chr3.3 CDS 15009586 15009900 15009586 ID=cds.MS.gene057926.t1;Parent=MS.gene057926.t1
Gene Sequence

>MS.gene057926

ATGAGACTCTACCTTGCATTGTTTCTCCTTTTGGCCTCTCTTCAAGTTACTCTAAGTAAAGATATTGAACATGGTTTGCTACTAGTAAATGGAGCTCAAGCAAAAGCTCAAACAGATGACAACTTCATTTGCGCTACGATTGATTGGTGGCCTCATGATAAATGCAACGACGGCTATTGTTCTTGGGGACACTCATCGATTGTAAATTTGGTGAGTATTTTCGTATTGTCATCTGTATAGAAAATAAAATCAATGCTTTTGCAATTTTATGTTTCCTTGGAAAGCAAGCTAACCTGTTTTAGTCATTGTTCAATTGAATGTGGATTGATTTTTCAGGACTTATCTCATCCTATCCTTGCCAAAGCAATCCAAGGTCTGTATTTCTACATTACTTAAATGTATATGATTTAGAATTTAGAAAATCGTTTAGTTTGATGACCGATATTTTAAAAATCGAACGGAACCAGCCAATTCGCTGATTGGTTTAATAATTTTTTAGCATTTATCTGTCATCTGGTTCAACCGTGGTTTAATCAATTAAACCATGACTCAGAGGTCTCAGCGGTTTGATCTCCGGTCTTGTTTTTATAACATTGTTGATGGGATTATTATTGTTGTTTTTTATTACAGTGGCTGCTTGAAATTTAAATGCATTAAGCATAATGTTATTCTTTTCATATCATTTTCTGATAGCCCTCAAACCTTTGAGGATAAGACTTGGAGGTTCTCTGCAAGACCAGGTGGTGTATAACGTAGGAAAATTGAAGTCTACTGGTCATCCATTTCAAAAGATGAAAAATGGATTGTTCGGATTTTCAAAGGGATCTTTACACATGCAAAGGTGGGACGAGCTGAATCATTTTTTCAATAAGACAGGGTGAGAATCCTTCCATTATATTTGTTATTATCATCACCGCTACACTCACTTTCTCTTCTTTTAAACCAAATAAAAAGGATAGTTTCAATTTAGTCCTTTCTTCCTTATAATTAAAGACTTTAGGTGATTCAATGTATTGTCTTCTATCCTGCATTATTGCAACAGTTTTTGATAGCTTACAAAGAGTATCTGAGATATCAGGATGTGATCGACCCCATTTTGTGTAAATATGTACCAAAACAAAGAACTTGGATGTCTGTGTCAGGTAGAATTACGATTACGTGTGGTAGGTGTACTTAATTGAAGTTTGACACTTTCAGGGCCATTGTGATATTTGGCTTGAATGCGCTCCATGGGAAGCACCAGACTAGTAATAATGTTTGGGAAGGAGCCTGGGACCCTACAAATGCTTATGATTTTATAAAGTACACTGTTTCAAAGGGATACAAGATTGATGCATGGGAATTTGGTATGACAGTAGACAAAGTAGTTTGTTATTTTCGTTAATGGACTGATCTATAGTTGTCAAAGCCTAGGGGTTCATGGTCCAAAAGGTCTAAACAGTGTTGTAAATCGCAGATCGCATAAAATAGCGATTCATACAAATTCCACTATGCAACAGTGCTATTGTTCCGCTATAACTGTTATCTGATAACATTTTGCTCGCGTATGGCGGAACTATAGCAATTTGTTCAAGTTCTACTACAGTTCAGTGCTGCTATTTAACAACATTGTTCTAAACCAATTGGACTTCAGACCGCTTTAGTCTTCCCTGTTGTTACCCGATGTGGACTTATTGTATATACTTATGTAGGTAATGAGTTAAGCGGTGAAGGCGTTGGTGCATCAGTCGGCGTTGCACCGTATGCGAAAGACGTGATAAACCTTAAACGAATTCTAGATGTGTTATACAAGAACTCGAGGTTCAAACCCTCACTTGTAGCACCCGGTGGATTTTATGATAAGGAATGGTACACGAAGCTTCTTCAGATTTCTGGTTCAGGCGTAGTCAATGTTCTAACTCATCATATATACAACTTGGGCCCAGGTTTGCTTGTCACTCACATAATTCTTTCTTGTATAGAATATATTTATTTTTTTTCACTGGCATGCCAAATACTAGTCTACCATACCATTCATAATCTATTTCTAAGTTAATTTCTCTTTTTCAGGTAATAACACACATCTTGTAGAGAAGATTTTAGAACCTAATCGCATGATCAAAGTGGAAAATACTTTCAGAAATCTTTCAGAGACCATTAAAAAACACGGTCCTTGGGCTTCTGCATGGGTAGGAGAAGCTGGCGGGGCAGCTACCAGTGGTGGTATTGGTATATCTAACACATTTGTGAATAGCTTTTGGTAATATTGATTCCATCCTTTTATTTTCCTCTTTCTAAGTTTTAGGTGCCAGAAGAAGAATTCTGATTTTTATTTAGAATGTGTTTAACCGAATATTTGAATGACTCGTCGTAGGTACTTAGATCAACTGGGAATAGCATCCACCTACAATACTAAAGTTTATTGTAGGCAGACATTTAACGGAGGGAACTATGGCCTTCTCAATTCCTCCACTCTCACTCCTAATCCTGACTACTACAGGCACGTATAAATTAAATATTACGGAATTTTTTTATTAGAGATTAATAGATATAACTTGATGAGGATTTATAGTGGTAATGCATGTCATTGTTAAACATATCTAATCCTAGATTCTGGTTCTGAAAACAGCGCACTATTGTGGCATCGGCTGATGGGAAAGAAGGTTCTTGGTGTTTCGAGTGATATTTCTTCGCCATTTTTACGCACTTACGCCCATTGTTCAAAAGACAGGGTAAGTATGCTAATTTACTACAACCTCTTAGGAAGGATATTATATTATATAATAGAGGAGCCTGATGAGTTCAGTTTTTATTCTTTTATATATGATATGATAAATATATTGACATCATACGAAGCTTAACACGCTTGTGCTAGAAATGATGCAAATATGGTAATTAACTATGGATTGATTCTTTGGTGATTATTATAATTCGAGTATCTTAATTAGTGTAACTATGGGATACTGATTCTTAATAGTTTCATAGTTGAGACACATAGGTTCTATCAATTGTCTCGTTTCCGAGAGACAACAATAGTTCATGAATACCTAGTGATGTTCTTGACTGCTGTATTTTTCCCCAAAACCACTGGCAGCCATGTTTATCTTTTTTCGACCTGTTAGAATTCAGAGAATTCTTGAGAAAAACTGATACTATTAAAGTTGAAAAATGAACTGATTCAGATGCAAGGGAGGTCCCAACTATTTATAGAAGTCGAAGATAATTGCAGTTGTTGGAAACAAATAACTATAACTATTACCAACTAAATATAACTGTTTAGTTAGTTATGTTTAAGGTAACTAGGAATAATAGATAGATCAGGTACAAATTAGAGATTAGATACAATTATCAATAAACTTATAAACCCGAGTAAGAATACTCGAATACTCCCTTGCAAGCTCAAGGTGGGTAGGAGCCATGAAAAAGATGATGGATCATACACACTGAGCTTGGATCTCAGAGGCTTCAAATCTAGTGGGAGAGAGAGCCTTAGTTAGGATATATGAACTACTTGTATTGTATCTTTAGATGATGTGTGACTAAACACGAACCGTCATTCCCAACAGAATGAAGGTGTTGCAGACTAACAATGTAGGCTGCCTAAAATTTCCGCAACTATAGCGGCTAGGGGAAAACTACAATTAATGCGGCTTTCAGTTTTCTAACATATTTCAATTGCTAAACTGAATAAACTCATCTCCAGGTTGATATTGAATGTTTGAAAATATTGAATCCTGGTTGATTCAGTGTCATTCTTAATTTGTTTGCAATTCTTGTTCTTGAAGCAAAATTTCCGATATCTTTTGACTTTTGCTATTAATTTCAGCATTCCTGAATTTCTTACCAATTTCATTCAACAGGCTGGTGTAACACTACTGTTGATCAACATAAGCAATCAAACTCAGTTCATACTCAATGTGAAAAACCATATAACTGTTAAAGCAAATGAGGTGGCCAAATTCAGGGAAGAGTATCACTTAACTCCAAAAGATAATAACCTCAGAAGCCATACCATGTTGCTGAATGGCATTCCACTCAAGTTAACAAAAAAAGGGGATATTCCAACAACGGATCCAGTGCACAATAATGTGAGATCTCCAATATACATAGATCCTTTGTCCATTGCATTTATTGTGTACCCAAACTTTGATGCTCCAGCTTGTGCCAGGCACTGA

Protein sequence

>MS.gene057926.t1

MRLYLALFLLLASLQVTLSKDIEHGLLLVNGAQAKAQTDDNFICATIDWWPHDKCNDGYCSWGHSSIVNLDLSHPILAKAIQALKPLRIRLGGSLQDQVVYNVGKLKSTGHPFQKMKNGLFGFSKGSLHMQRWDELNHFFNKTGAIVIFGLNALHGKHQTSNNVWEGAWDPTNAYDFIKYTVSKGYKIDAWEFGNELSGEGVGASVGVAPYAKDVINLKRILDVLYKNSRFKPSLVAPGGFYDKEWYTKLLQISGSGVVNVLTHHIYNLGPGNNTHLVEKILEPNRMIKVENTFRNLSETIKKHGPWASAWVGEAGGAATSGGIGISNTFVNSFWYLDQLGIASTYNTKVYCRQTFNGGNYGLLNSSTLTPNPDYYSALLWHRLMGKKVLGVSSDISSPFLRTYAHCSKDRAGVTLLLINISNQTQFILNVKNHITVKANEVAKFREEYHLTPKDNNLRSHTMLLNGIPLKLTKKGDIPTTDPVHNNVRSPIYIDPLSIAFIVYPNFDAPACARH