Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43798.t1 | AES98591.2 | 93.5 | 558 | 35 | 1 | 1 | 557 | 1 | 558 | 1.50E-288 | 1001.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43798.t1 | Q84KJ3 | 69.9 | 429 | 128 | 1 | 65 | 492 | 88 | 516 | 9.1e-189 | 661.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43798.t1 | G7KE47 | 93.5 | 558 | 35 | 1 | 1 | 557 | 1 | 558 | 1.1e-288 | 1001.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056387 | MS.gene43798 | 0.806272 | 8.92E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43798 | MS.gene030901 | PPI |
| MS.gene43798 | MS.gene27972 | PPI |
| MS.gene43798 | MS.gene53501 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43798.t1 | MTR_5g070310 | 93.728 | 558 | 34 | 1 | 1 | 557 | 1 | 558 | 0.0 | 1017 |
| MS.gene43798.t1 | MTR_4g116900 | 25.246 | 305 | 193 | 13 | 165 | 465 | 161 | 434 | 3.24e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43798.t1 | AT5G58760 | 70.392 | 510 | 141 | 4 | 5 | 509 | 6 | 510 | 0.0 | 744 |
| MS.gene43798.t1 | AT5G58760 | 74.515 | 412 | 105 | 0 | 98 | 509 | 1 | 412 | 0.0 | 670 |
| MS.gene43798.t1 | AT1G80710 | 25.000 | 344 | 206 | 14 | 165 | 492 | 209 | 516 | 1.18e-16 | 83.6 |
Find 128 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGTCTGCTTGGATTT+TGG | 0.092885 | 5.1:-54587829 | None:intergenic |
| CGTATATGGGATTCTATCTT+TGG | 0.201004 | 5.1:+54586662 | MS.gene43798:CDS |
| GGATTCTATCTTTGGTAATA+TGG | 0.203494 | 5.1:+54586670 | MS.gene43798:CDS |
| TCTCTTTCAATGTGAACTTT+AGG | 0.208885 | 5.1:-54583059 | None:intergenic |
| AGGACAATCGTCTTCGTATA+TGG | 0.237095 | 5.1:+54586648 | MS.gene43798:CDS |
| AACACCTGGAAAATGCTTTA+TGG | 0.242204 | 5.1:+54585899 | MS.gene43798:CDS |
| CTCTTTCAATGTGAACTTTA+GGG | 0.245352 | 5.1:-54583058 | None:intergenic |
| CAAAGAAAACAAGGTTTCAT+AGG | 0.255454 | 5.1:-54583418 | None:intergenic |
| CATGCCATCCATCAGGATTC+AGG | 0.269004 | 5.1:-54585718 | None:intergenic |
| AACCATTAGTTGTACTGATT+TGG | 0.271261 | 5.1:+54585667 | MS.gene43798:CDS |
| CAGCTTTGAAGGGTGTTAAA+TGG | 0.287007 | 5.1:-54586736 | None:intergenic |
| CACATACTCCAAAGGTTTAG+AGG | 0.287821 | 5.1:-54584639 | None:intergenic |
| AAATGAAAAGATTGAGAAAC+TGG | 0.289438 | 5.1:+54583169 | MS.gene43798:CDS |
| TCCTGGCAACTGGGAGTTCT+AGG | 0.318166 | 5.1:+54587041 | MS.gene43798:CDS |
| CTATATTGTAGGCGCGCATT+TGG | 0.318325 | 5.1:+54586513 | MS.gene43798:intron |
| GCATATTTCTCTCCAATAAC+TGG | 0.326448 | 5.1:+54586602 | MS.gene43798:CDS |
| TTGGTCTGGAATCACACATT+TGG | 0.346565 | 5.1:-54585205 | None:intergenic |
| TGGATCCCATTCAGCTTTGA+AGG | 0.350384 | 5.1:-54586747 | None:intergenic |
| CATGACTATGCACAATTTCT+CGG | 0.350606 | 5.1:-54586703 | None:intergenic |
| TTAGAGTCACTTGCTGTTGT+TGG | 0.357110 | 5.1:+54586872 | MS.gene43798:CDS |
| AGAAAGGACAACTTGGAGTC+TGG | 0.357633 | 5.1:+54585417 | MS.gene43798:intron |
| GGACTGATGGTTGTGATGTT+CGG | 0.374930 | 5.1:-54586989 | None:intergenic |
| TTTCTGAGAGTTAGCGTAAT+GGG | 0.378118 | 5.1:-54583227 | None:intergenic |
| AAAGATTGAGAAACTGGAAA+TGG | 0.384391 | 5.1:+54583175 | MS.gene43798:CDS |
| GTGAAGAAAACCAAAGTTAT+CGG | 0.387021 | 5.1:-54585960 | None:intergenic |
| CGTGATGATATCCTGGCAAC+TGG | 0.388271 | 5.1:+54587031 | MS.gene43798:CDS |
| TGGTCTGGAATCACACATTT+GGG | 0.388716 | 5.1:-54585204 | None:intergenic |
| TACTGAGCATGGTGTTGTTC+CGG | 0.398936 | 5.1:+54584601 | MS.gene43798:CDS |
| CTTGTATCTATAAAATCAAT+AGG | 0.399051 | 5.1:-54586935 | None:intergenic |
| TAATCCTACAAATGATTGTA+TGG | 0.401174 | 5.1:+54585622 | MS.gene43798:CDS |
| CAATTTCCATTCAGTCTGCT+TGG | 0.404544 | 5.1:-54587836 | None:intergenic |
| GACTGATGGTTGTGATGTTC+GGG | 0.410135 | 5.1:-54586988 | None:intergenic |
| TGCATCACCATTCCTATGAT+TGG | 0.418131 | 5.1:-54586316 | None:intergenic |
| CCACAAGTCAAAAGGATGTC+TGG | 0.420331 | 5.1:-54586396 | None:intergenic |
| CATCCTGTTGTCGGGAGATA+AGG | 0.421944 | 5.1:+54585299 | MS.gene43798:CDS |
| CTCCAAATCAGTACAACTAA+TGG | 0.423674 | 5.1:-54585669 | None:intergenic |
| TATATTGTAGGCGCGCATTT+GGG | 0.425675 | 5.1:+54586514 | MS.gene43798:intron |
| AAGATTGAGAAACTGGAAAT+GGG | 0.435725 | 5.1:+54583176 | MS.gene43798:CDS |
| TCGACATGCGGTCCAATCAT+AGG | 0.436742 | 5.1:+54586304 | MS.gene43798:CDS |
| CACTTTGAATTGTCCACATC+GGG | 0.441106 | 5.1:+54584574 | MS.gene43798:CDS |
| TGGTCATGAAGCGGGTTTCA+AGG | 0.442646 | 5.1:+54583375 | MS.gene43798:CDS |
| AGTTGTACTGATTTGGAGAC+TGG | 0.447052 | 5.1:+54585674 | MS.gene43798:CDS |
| CTGGAAAATGCTTTATGGTA+TGG | 0.452127 | 5.1:+54585904 | MS.gene43798:CDS |
| TAGACCATACAATCATTTGT+AGG | 0.454241 | 5.1:-54585626 | None:intergenic |
| TAACCTTATCTCCCGACAAC+AGG | 0.455373 | 5.1:-54585302 | None:intergenic |
| ATCTGAGACGGTCGAGGAGA+AGG | 0.459772 | 5.1:+54587696 | MS.gene43798:CDS |
| GGACAATCGTCTTCGTATAT+GGG | 0.460807 | 5.1:+54586649 | MS.gene43798:CDS |
| ACAGCGCAACTCACTTGGTC+TGG | 0.463787 | 5.1:-54585219 | None:intergenic |
| TAACACCCTTCAAAGCTGAA+TGG | 0.473837 | 5.1:+54586741 | MS.gene43798:CDS |
| ACAACAGCAAGTGACTCTAA+TGG | 0.474300 | 5.1:-54586869 | None:intergenic |
| AAAAGGATGTCTGGTTGCAT+TGG | 0.474611 | 5.1:-54586387 | None:intergenic |
| AATGTGAACTTTAGGGAAAG+AGG | 0.474921 | 5.1:-54583051 | None:intergenic |
| TAGGAATGGCATGTCTTAGC+TGG | 0.475369 | 5.1:-54584670 | None:intergenic |
| ACCTAGAACTCCCAGTTGCC+AGG | 0.480432 | 5.1:-54587042 | None:intergenic |
| CTATAAAATCAATAGGATGC+AGG | 0.481005 | 5.1:-54586928 | None:intergenic |
| AATATTACATGCCATCCATC+AGG | 0.482629 | 5.1:-54585725 | None:intergenic |
| AAAGAGGTTCTACGAGTAAC+CGG | 0.483672 | 5.1:-54583035 | None:intergenic |
| GATCATTTCCACAAGTCAAA+AGG | 0.485595 | 5.1:-54586404 | None:intergenic |
| GAAAGGACAACTTGGAGTCT+GGG | 0.485905 | 5.1:+54585418 | MS.gene43798:intron |
| AACACCCTTCAAAGCTGAAT+GGG | 0.487045 | 5.1:+54586742 | MS.gene43798:CDS |
| AAGAATAACATCCTGTTGTC+GGG | 0.488018 | 5.1:+54585291 | MS.gene43798:CDS |
| TTGAAACCCGCTTCATGACC+AGG | 0.490682 | 5.1:-54583373 | None:intergenic |
| GTGCTCGTGGCCGATAACTT+TGG | 0.491495 | 5.1:+54585950 | MS.gene43798:CDS |
| TTTACTAGGGGCCAAACACC+TGG | 0.499445 | 5.1:+54585885 | MS.gene43798:intron |
| ACTATGCACAATTTCTCGGC+TGG | 0.500089 | 5.1:-54586699 | None:intergenic |
| AAAGAAAACAAGGTTTCATA+GGG | 0.501938 | 5.1:-54583417 | None:intergenic |
| TATAAAATCAATAGGATGCA+GGG | 0.504604 | 5.1:-54586927 | None:intergenic |
| ATCGATGAATCCGATGATGA+TGG | 0.505501 | 5.1:+54587784 | MS.gene43798:CDS |
| GAAGAATAACATCCTGTTGT+CGG | 0.505802 | 5.1:+54585290 | MS.gene43798:CDS |
| CTGAGAAGAAACGTGGTAAG+AGG | 0.511583 | 5.1:+54587749 | MS.gene43798:CDS |
| TCATAAAAGAAAGGACAACT+TGG | 0.517742 | 5.1:+54585410 | MS.gene43798:intron |
| GGATCCCATTCAGCTTTGAA+GGG | 0.518856 | 5.1:-54586746 | None:intergenic |
| GAAAGCAAAATTGTGGTTTG+TGG | 0.518880 | 5.1:+54587721 | MS.gene43798:CDS |
| TCATCCACGTGATGATATCC+TGG | 0.520328 | 5.1:+54587024 | MS.gene43798:CDS |
| TAACAACACGCTTGTGCTCA+AGG | 0.528107 | 5.1:-54586574 | None:intergenic |
| AAGCTTATTCACCGGACTGA+TGG | 0.528676 | 5.1:-54587002 | None:intergenic |
| GTCTATTCCGCATCCTCAGA+TGG | 0.528780 | 5.1:+54585644 | MS.gene43798:CDS |
| TGATAACAGCGCAACTCACT+TGG | 0.530316 | 5.1:-54585224 | None:intergenic |
| ATGGATATTCACTATGAGAA+AGG | 0.532012 | 5.1:+54585923 | MS.gene43798:CDS |
| CAAAATCCAAGCAGACTGAA+TGG | 0.532156 | 5.1:+54587830 | MS.gene43798:CDS |
| TGAGAAGGTTTACGAGAAAG+TGG | 0.536172 | 5.1:+54585445 | MS.gene43798:CDS |
| CTATGCACAATTTCTCGGCT+GGG | 0.540395 | 5.1:-54586698 | None:intergenic |
| CCATCAGGATTCAGGTTCAT+CGG | 0.543513 | 5.1:-54585710 | None:intergenic |
| AAGAAGCCTGGTCATGAAGC+GGG | 0.545678 | 5.1:+54583367 | MS.gene43798:CDS |
| CAAAATTCTTACTACGTCAC+AGG | 0.548895 | 5.1:+54586628 | MS.gene43798:CDS |
| AACTCTCAGAAAAGTTTGCA+AGG | 0.549049 | 5.1:+54583238 | MS.gene43798:CDS |
| GGTCATGAAGCGGGTTTCAA+GGG | 0.549246 | 5.1:+54583376 | MS.gene43798:CDS |
| GATATGCGTCACTTAGAAGC+TGG | 0.550288 | 5.1:+54586536 | MS.gene43798:CDS |
| CCGATGAACCTGAATCCTGA+TGG | 0.557467 | 5.1:+54585710 | MS.gene43798:CDS |
| AAGAAACGTGGTAAGAGGAA+AGG | 0.563572 | 5.1:+54587754 | MS.gene43798:CDS |
| TAGTAGACGGATAACAAGCT+TGG | 0.565758 | 5.1:+54585254 | MS.gene43798:CDS |
| TTATAGGTGTGTAAGAAGCC+TGG | 0.566694 | 5.1:+54583355 | MS.gene43798:intron |
| ACAGGATGTTATTCTTCGTA+GGG | 0.566721 | 5.1:-54585284 | None:intergenic |
| GCAGTTGGTAGCAGAAGTCA+TGG | 0.572898 | 5.1:+54586964 | MS.gene43798:CDS |
| AATGGTTCCATCTGAGGATG+CGG | 0.574097 | 5.1:-54585651 | None:intergenic |
| ACAACTAATGGTTCCATCTG+AGG | 0.576667 | 5.1:-54585657 | None:intergenic |
| AGATACAAGTACAGGGCAGT+TGG | 0.578810 | 5.1:+54586949 | MS.gene43798:CDS |
| TGAGAAAGGTCTTGTGCTCG+TGG | 0.581673 | 5.1:+54585937 | MS.gene43798:CDS |
| GGAAATGAATCCATCATCAT+CGG | 0.582701 | 5.1:-54587794 | None:intergenic |
| TCTGTTCATTTGGAAGCCAA+AGG | 0.589673 | 5.1:+54587669 | MS.gene43798:CDS |
| CGTGGATGAAGCTTATTCAC+CGG | 0.591688 | 5.1:-54587010 | None:intergenic |
| TCGGTTCTTTAACATGGCAC+CGG | 0.592131 | 5.1:+54583016 | None:intergenic |
| CAAAGCTGAATGGGATCCAA+AGG | 0.592946 | 5.1:+54586751 | MS.gene43798:CDS |
| GAACATCACAACCATCAGTC+CGG | 0.595957 | 5.1:+54586991 | MS.gene43798:CDS |
| ACTTAGGCTTACCGTAGGAA+TGG | 0.598093 | 5.1:-54584684 | None:intergenic |
| ATGCGGTCCAATCATAGGAA+TGG | 0.598179 | 5.1:+54586309 | MS.gene43798:CDS |
| GGATGTTATTCTTCGTAGGG+TGG | 0.599457 | 5.1:-54585281 | None:intergenic |
| ATTGTCTCGCTGCTCGACAA+AGG | 0.600055 | 5.1:+54587855 | MS.gene43798:CDS |
| CTGGTTGCATTGGATTGCAA+TGG | 0.602433 | 5.1:-54586377 | None:intergenic |
| AGAAGAAGAAGAAGCACTCG+AGG | 0.605894 | 5.1:+54583115 | MS.gene43798:CDS |
| TAAGAAGCCTGGTCATGAAG+CGG | 0.617194 | 5.1:+54583366 | MS.gene43798:CDS |
| CATCGGGTCACTACTGAGCA+TGG | 0.620894 | 5.1:+54584590 | MS.gene43798:CDS |
| CGTTCAAACACATACTCCAA+AGG | 0.622066 | 5.1:-54584647 | None:intergenic |
| TTATCAGATATCATAGTAGA+CGG | 0.622532 | 5.1:+54585241 | MS.gene43798:CDS |
| GTGATGATATCCTGGCAACT+GGG | 0.623672 | 5.1:+54587032 | MS.gene43798:CDS |
| AACAGGATGTTATTCTTCGT+AGG | 0.624223 | 5.1:-54585285 | None:intergenic |
| GAAGGACGAAAGCAAAATTG+TGG | 0.625614 | 5.1:+54587714 | MS.gene43798:CDS |
| CCACTTTGAATTGTCCACAT+CGG | 0.628827 | 5.1:+54584573 | MS.gene43798:CDS |
| TGCTCAGTAGTGACCCGATG+TGG | 0.633127 | 5.1:-54584587 | None:intergenic |
| GTCATTACAGGGTCGACATG+CGG | 0.635357 | 5.1:+54586292 | MS.gene43798:intron |
| GCTAAGACATGCCATTCCTA+CGG | 0.637351 | 5.1:+54584673 | MS.gene43798:CDS |
| GCTTGTGCTCAAGGCTACAG+AGG | 0.642505 | 5.1:-54586565 | None:intergenic |
| TGAACCTGAATCCTGATGGA+TGG | 0.648338 | 5.1:+54585714 | MS.gene43798:CDS |
| CTTGTGCTCAAGGCTACAGA+GGG | 0.650690 | 5.1:-54586564 | None:intergenic |
| AGGATTCAGGTTCATCGGAG+AGG | 0.675833 | 5.1:-54585705 | None:intergenic |
| CCGATGTGGACAATTCAAAG+TGG | 0.705167 | 5.1:-54584573 | None:intergenic |
| GGAAAAGCTGAGAAGAAACG+TGG | 0.725862 | 5.1:+54587742 | MS.gene43798:CDS |
| GTTGCCAGGATATCATCACG+TGG | 0.762098 | 5.1:-54587028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAACAATTTAATTAT+TGG | - | chr5.1:54585037-54585056 | None:intergenic | 10.0% |
| !! | ATAATTTAAGAAAAAACATT+TGG | - | chr5.1:54585756-54585775 | None:intergenic | 10.0% |
| !!! | TAAAATTTTCACTTATATAA+CGG | - | chr5.1:54586898-54586917 | None:intergenic | 10.0% |
| !!! | TATATAAGTGAAAATTTTAA+TGG | + | chr5.1:54586899-54586918 | MS.gene43798:CDS | 10.0% |
| !! | AAGCTATATTATTAATCTTA+AGG | + | chr5.1:54587614-54587633 | MS.gene43798:intron | 15.0% |
| !! | AATCAAAATTTCAACTTTAA+AGG | - | chr5.1:54587388-54587407 | None:intergenic | 15.0% |
| !! | AGCTATATTATTAATCTTAA+GGG | + | chr5.1:54587615-54587634 | MS.gene43798:intron | 15.0% |
| !! | ATGTAATTTACAGTAATAAT+AGG | - | chr5.1:54585328-54585347 | None:intergenic | 15.0% |
| !! | ATTCTTAAAAAGATAAATGT+TGG | - | chr5.1:54586187-54586206 | None:intergenic | 15.0% |
| !! | TATACAAATAAAAAAGGAAA+TGG | - | chr5.1:54584267-54584286 | None:intergenic | 15.0% |
| !! | TTTGTTAATTAGATATACAT+AGG | + | chr5.1:54587563-54587582 | MS.gene43798:intron | 15.0% |
| !!! | AGTTTTCCTATTAAAAAATT+AGG | - | chr5.1:54584165-54584184 | None:intergenic | 15.0% |
| !!! | ATATTTTAAAAGAATGACTT+AGG | - | chr5.1:54584703-54584722 | None:intergenic | 15.0% |
| !!! | TATTGGAATTTTGTTATTAT+AGG | + | chr5.1:54583339-54583358 | MS.gene43798:intron | 15.0% |
| !!! | TTGAATATGTTTCTTTTAAT+TGG | + | chr5.1:54586089-54586108 | MS.gene43798:intron | 15.0% |
| !!! | TTTTAATTGAAAAACTTTGT+AGG | + | chr5.1:54585597-54585616 | MS.gene43798:intron | 15.0% |
| !! | AAAAAAATTCATAACTACGA+AGG | - | chr5.1:54586131-54586150 | None:intergenic | 20.0% |
| !! | AAAAAATTCATAACTACGAA+GGG | - | chr5.1:54586130-54586149 | None:intergenic | 20.0% |
| !! | AAAATAAGTAGAAACGAAAA+GGG | - | chr5.1:54586818-54586837 | None:intergenic | 20.0% |
| !! | AATATTGTTTATGTAATTGC+AGG | + | chr5.1:54586844-54586863 | MS.gene43798:intron | 20.0% |
| !! | ATAATTACATGACTGAAAAA+AGG | - | chr5.1:54584877-54584896 | None:intergenic | 20.0% |
| !! | ATTTCTCATATTGTTTGTAT+GGG | + | chr5.1:54583469-54583488 | MS.gene43798:intron | 20.0% |
| !! | CTGATAATAGTTTAAGAAAA+TGG | + | chr5.1:54583782-54583801 | MS.gene43798:intron | 20.0% |
| !! | CTTGTATCTATAAAATCAAT+AGG | - | chr5.1:54586938-54586957 | None:intergenic | 20.0% |
| !! | GAACTTGAATATGTATAAAA+AGG | - | chr5.1:54586445-54586464 | None:intergenic | 20.0% |
| !! | GTTGCATATACAAATAAAAA+AGG | - | chr5.1:54584273-54584292 | None:intergenic | 20.0% |
| !! | TAAAATAAGTAGAAACGAAA+AGG | - | chr5.1:54586819-54586838 | None:intergenic | 20.0% |
| !! | TAATTACATGACTGAAAAAA+GGG | - | chr5.1:54584876-54584895 | None:intergenic | 20.0% |
| !! | TCCACAATGAAAATATTAAA+AGG | - | chr5.1:54585010-54585029 | None:intergenic | 20.0% |
| !! | TCCATATAAAATCATCTTTA+AGG | - | chr5.1:54583641-54583660 | None:intergenic | 20.0% |
| !! | TGAATGATACATAAACATTA+TGG | - | chr5.1:54585108-54585127 | None:intergenic | 20.0% |
| !!! | AATATATTTTGCTATAATGC+CGG | - | chr5.1:54583979-54583998 | None:intergenic | 20.0% |
| !!! | ACATGACCTAATTTTTTAAT+AGG | + | chr5.1:54584156-54584175 | MS.gene43798:intron | 20.0% |
| !!! | ATGAATTTTTTTCTTGGTTA+GGG | + | chr5.1:54586139-54586158 | MS.gene43798:intron | 20.0% |
| !!! | ATTTTATAGATACAAGTACA+GGG | + | chr5.1:54586942-54586961 | MS.gene43798:CDS | 20.0% |
| !!! | GTAGTTATGAATTTTTTTCT+TGG | + | chr5.1:54586133-54586152 | MS.gene43798:intron | 20.0% |
| !!! | GTTACTTGATATAATTTTTC+AGG | + | chr5.1:54587644-54587663 | MS.gene43798:intron | 20.0% |
| !!! | TATGAATTTTTTTCTTGGTT+AGG | + | chr5.1:54586138-54586157 | MS.gene43798:intron | 20.0% |
| !!! | TATTACATTTTAGGACTATA+TGG | - | chr5.1:54586036-54586055 | None:intergenic | 20.0% |
| !!! | TCCTTAAAGATGATTTTATA+TGG | + | chr5.1:54583637-54583656 | MS.gene43798:intron | 20.0% |
| !!! | TCCTTTTAATATTTTCATTG+TGG | + | chr5.1:54585006-54585025 | MS.gene43798:intron | 20.0% |
| !!! | TGTATGTGTTATTTTTACTA+GGG | + | chr5.1:54585872-54585891 | MS.gene43798:intron | 20.0% |
| !!! | TTGTATGTGTTATTTTTACT+AGG | + | chr5.1:54585871-54585890 | MS.gene43798:intron | 20.0% |
| !!! | TTTGATTTACAAAATTGCAA+GGG | + | chr5.1:54587401-54587420 | MS.gene43798:intron | 20.0% |
| !!! | TTTTATTTTACTAGTGAATG+TGG | + | chr5.1:54583495-54583514 | MS.gene43798:intron | 20.0% |
| !!! | TTTTGATTTACAAAATTGCA+AGG | + | chr5.1:54587400-54587419 | MS.gene43798:intron | 20.0% |
| ! | AAAAATGTTGTGTTTGTTTG+AGG | + | chr5.1:54583574-54583593 | MS.gene43798:intron | 25.0% |
| ! | AAAGAAAACAAGGTTTCATA+GGG | - | chr5.1:54583420-54583439 | None:intergenic | 25.0% |
| ! | AAAGATAAATGTTGGAAAGA+TGG | - | chr5.1:54586179-54586198 | None:intergenic | 25.0% |
| ! | AAAGGCTTAAAAATTTGATG+AGG | - | chr5.1:54587370-54587389 | None:intergenic | 25.0% |
| ! | AAATGAAAAGATTGAGAAAC+TGG | + | chr5.1:54583169-54583188 | MS.gene43798:CDS | 25.0% |
| ! | AAGAAGAAGAAGAAGAAAAT+GGG | + | chr5.1:54583138-54583157 | MS.gene43798:CDS | 25.0% |
| ! | CAAAATGGTTTCTATATTGT+AGG | + | chr5.1:54586502-54586521 | MS.gene43798:intron | 25.0% |
| ! | CAATATGGTATATTGTGATT+TGG | + | chr5.1:54584810-54584829 | MS.gene43798:intron | 25.0% |
| ! | CATTTCTCATATTGTTTGTA+TGG | + | chr5.1:54583468-54583487 | MS.gene43798:intron | 25.0% |
| ! | CTGCTTTAATCATAAAAGAA+AGG | + | chr5.1:54585401-54585420 | MS.gene43798:intron | 25.0% |
| ! | GAAAATGAACAATTACATGA+AGG | - | chr5.1:54585535-54585554 | None:intergenic | 25.0% |
| ! | GTTGAAAAGTTTGCATATTA+CGG | - | chr5.1:54584219-54584238 | None:intergenic | 25.0% |
| ! | TAAGCCTTCAATTTATGAAT+AGG | - | chr5.1:54584960-54584979 | None:intergenic | 25.0% |
| ! | TAATCCTACAAATGATTGTA+TGG | + | chr5.1:54585622-54585641 | MS.gene43798:CDS | 25.0% |
| ! | TATAAAATCAATAGGATGCA+GGG | - | chr5.1:54586930-54586949 | None:intergenic | 25.0% |
| ! | TATGATTAAAGCAGAAAAAG+AGG | - | chr5.1:54585395-54585414 | None:intergenic | 25.0% |
| ! | TCATATATGAAGGACTAAAT+AGG | - | chr5.1:54585083-54585102 | None:intergenic | 25.0% |
| ! | TTAAACAAAAAAGCTACCTT+TGG | - | chr5.1:54586770-54586789 | None:intergenic | 25.0% |
| ! | TTATCAGATATCATAGTAGA+CGG | + | chr5.1:54585241-54585260 | MS.gene43798:CDS | 25.0% |
| ! | TTCTGTATCCATACTATTAA+AGG | - | chr5.1:54587595-54587614 | None:intergenic | 25.0% |
| !! | AATTGGTTTCATATATGACA+TGG | - | chr5.1:54586244-54586263 | None:intergenic | 25.0% |
| !! | ATCTTTTGTCATACATAGAA+AGG | - | chr5.1:54587143-54587162 | None:intergenic | 25.0% |
| !! | CTGTTTTATGTGTTTCAATA+TGG | + | chr5.1:54584795-54584814 | MS.gene43798:intron | 25.0% |
| !! | GATGATTTTATATGGAACAA+AGG | + | chr5.1:54583645-54583664 | MS.gene43798:intron | 25.0% |
| !! | GATTTTATAGATACAAGTAC+AGG | + | chr5.1:54586941-54586960 | MS.gene43798:CDS | 25.0% |
| !! | TAAGTTGCGATTTTTCTTAT+GGG | + | chr5.1:54583316-54583335 | MS.gene43798:intron | 25.0% |
| !! | TTTATCGATTAGCAATATGA+TGG | + | chr5.1:54584430-54584449 | MS.gene43798:intron | 25.0% |
| !!! | AGAATTTTGTTTCCAGTTAT+TGG | - | chr5.1:54586617-54586636 | None:intergenic | 25.0% |
| !!! | ATGATTGATTTGTTCTTGTA+AGG | + | chr5.1:54583694-54583713 | MS.gene43798:intron | 25.0% |
| !!! | CTTTAGTTTTGAAGAATGTT+TGG | + | chr5.1:54584732-54584751 | MS.gene43798:intron | 25.0% |
| !!! | GTATGTGTTATTTTTACTAG+GGG | + | chr5.1:54585873-54585892 | MS.gene43798:intron | 25.0% |
| !!! | TAACTTTGCTACCTTTTTTA+TGG | - | chr5.1:54586350-54586369 | None:intergenic | 25.0% |
| !!! | TCTTGTTGGTTTAAAACATT+GGG | + | chr5.1:54587234-54587253 | MS.gene43798:intron | 25.0% |
| !!! | TTAAGTTGCGATTTTTCTTA+TGG | + | chr5.1:54583315-54583334 | MS.gene43798:intron | 25.0% |
| AAAAAAGGTAGCAAAGTTAC+TGG | + | chr5.1:54586351-54586370 | MS.gene43798:CDS | 30.0% | |
| AAAATTGAACCTACACAAAG+TGG | + | chr5.1:54587268-54587287 | MS.gene43798:intron | 30.0% | |
| AAAGATTGAGAAACTGGAAA+TGG | + | chr5.1:54583175-54583194 | MS.gene43798:CDS | 30.0% | |
| AAGATTGAGAAACTGGAAAT+GGG | + | chr5.1:54583176-54583195 | MS.gene43798:CDS | 30.0% | |
| ACGATTAGTATGATTATCTG+AGG | - | chr5.1:54587080-54587099 | None:intergenic | 30.0% | |
| ACTATCCTAGATTCACAATT+AGG | + | chr5.1:54584026-54584045 | MS.gene43798:intron | 30.0% | |
| AGAAGAAGAAGAAGAAAATG+GGG | + | chr5.1:54583139-54583158 | MS.gene43798:CDS | 30.0% | |
| ATGGATATTCACTATGAGAA+AGG | + | chr5.1:54585923-54585942 | MS.gene43798:CDS | 30.0% | |
| ATGTTGATATTCAACTTACC+AGG | - | chr5.1:54583451-54583470 | None:intergenic | 30.0% | |
| ATTACCCTAATTGTGAATCT+AGG | - | chr5.1:54584034-54584053 | None:intergenic | 30.0% | |
| ATTCACAATTAGGGTAATAG+TGG | + | chr5.1:54584036-54584055 | MS.gene43798:intron | 30.0% | |
| CAAAGAAAACAAGGTTTCAT+AGG | - | chr5.1:54583421-54583440 | None:intergenic | 30.0% | |
| CACACCTATTCATAAATTGA+AGG | + | chr5.1:54584953-54584972 | MS.gene43798:intron | 30.0% | |
| CAGTGTAAACGAAAAAGTAA+TGG | - | chr5.1:54584841-54584860 | None:intergenic | 30.0% | |
| CATTATGGACTCATATATGA+AGG | - | chr5.1:54585093-54585112 | None:intergenic | 30.0% | |
| CTATAAAATCAATAGGATGC+AGG | - | chr5.1:54586931-54586950 | None:intergenic | 30.0% | |
| CTATAGCCAACAAAATTTGA+TGG | - | chr5.1:54586066-54586085 | None:intergenic | 30.0% | |
| CTATCCTAGATTCACAATTA+GGG | + | chr5.1:54584027-54584046 | MS.gene43798:intron | 30.0% | |
| CTCTTTCAATGTGAACTTTA+GGG | - | chr5.1:54583061-54583080 | None:intergenic | 30.0% | |
| CTTCAATTTATGAATAGGTG+TGG | - | chr5.1:54584955-54584974 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAAGAAAA+TGG | + | chr5.1:54583137-54583156 | MS.gene43798:CDS | 30.0% | |
| GACTTATTTCAACTGTTATG+CGG | + | chr5.1:54584315-54584334 | MS.gene43798:intron | 30.0% | |
| GAGAGAAAAATATTGAGACA+AGG | - | chr5.1:54584468-54584487 | None:intergenic | 30.0% | |
| GGGAAAAAAAGGAAATCTTA+GGG | + | chr5.1:54584098-54584117 | MS.gene43798:intron | 30.0% | |
| GTGAAGAAAACCAAAGTTAT+CGG | - | chr5.1:54585963-54585982 | None:intergenic | 30.0% | |
| TACATGAGTTTACTCTTCAA+TGG | - | chr5.1:54587447-54587466 | None:intergenic | 30.0% | |
| TAGACCATACAATCATTTGT+AGG | - | chr5.1:54585629-54585648 | None:intergenic | 30.0% | |
| TAGTCATTGAGTCCAAAAAA+AGG | + | chr5.1:54586210-54586229 | MS.gene43798:intron | 30.0% | |
| TCATAAAAGAAAGGACAACT+TGG | + | chr5.1:54585410-54585429 | MS.gene43798:intron | 30.0% | |
| TCTCTTTCAATGTGAACTTT+AGG | - | chr5.1:54583062-54583081 | None:intergenic | 30.0% | |
| TGGGAAAAAAAGGAAATCTT+AGG | + | chr5.1:54584097-54584116 | MS.gene43798:intron | 30.0% | |
| TGTCTGACATCAATAAATGT+CGG | + | chr5.1:54583816-54583835 | MS.gene43798:intron | 30.0% | |
| ! | ATAAAATGAAGAGTGTGTCT+GGG | - | chr5.1:54584415-54584434 | None:intergenic | 30.0% |
| ! | CAGTCTAGAACTCAAATAAA+AGG | + | chr5.1:54583908-54583927 | MS.gene43798:intron | 30.0% |
| ! | GGAGGGATATATTACATTTT+AGG | - | chr5.1:54586045-54586064 | None:intergenic | 30.0% |
| ! | GGAGTTTTACAAAGAAAACA+AGG | - | chr5.1:54583430-54583449 | None:intergenic | 30.0% |
| ! | GGATTCTATCTTTGGTAATA+TGG | + | chr5.1:54586670-54586689 | MS.gene43798:CDS | 30.0% |
| ! | TGTCTCAATATTTTTCTCTC+TGG | + | chr5.1:54584468-54584487 | MS.gene43798:intron | 30.0% |
| ! | TGTGGTTTGATGATATATGA+TGG | + | chr5.1:54583513-54583532 | MS.gene43798:intron | 30.0% |
| ! | TGTTTTCTTTGTAAAACTCC+TGG | + | chr5.1:54583430-54583449 | MS.gene43798:CDS | 30.0% |
| ! | TTTAGCACTCACTCTTTTAT+TGG | - | chr5.1:54587315-54587334 | None:intergenic | 30.0% |
| !! | AAATGGGTTTTGATGCTAAT+AGG | + | chr5.1:54583192-54583211 | MS.gene43798:CDS | 30.0% |
| !! | AACCATTAGTTGTACTGATT+TGG | + | chr5.1:54585667-54585686 | MS.gene43798:CDS | 30.0% |
| !! | AAGTTTGCAAGGTTTGTTAA+TGG | + | chr5.1:54583249-54583268 | MS.gene43798:intron | 30.0% |
| !! | CTCTTGTTGGTTTAAAACAT+TGG | + | chr5.1:54587233-54587252 | MS.gene43798:intron | 30.0% |
| !! | GAACAAAGGTGATTTTGTTT+TGG | + | chr5.1:54583659-54583678 | MS.gene43798:intron | 30.0% |
| !! | GCAGTTTTGATCCATAAAAA+AGG | + | chr5.1:54586336-54586355 | MS.gene43798:CDS | 30.0% |
| !! | GTTTTGATGCTAATAGGAAA+GGG | + | chr5.1:54583198-54583217 | MS.gene43798:CDS | 30.0% |
| !!! | ATGGCTATAGATCCTTTTTT+TGG | - | chr5.1:54586225-54586244 | None:intergenic | 30.0% |
| !!! | CTTTTATTTGAGTTCTAGAC+TGG | - | chr5.1:54583910-54583929 | None:intergenic | 30.0% |
| AACACCTGGAAAATGCTTTA+TGG | + | chr5.1:54585899-54585918 | MS.gene43798:CDS | 35.0% | |
| AACAGGATGTTATTCTTCGT+AGG | - | chr5.1:54585288-54585307 | None:intergenic | 35.0% | |
| AACTCTCAGAAAAGTTTGCA+AGG | + | chr5.1:54583238-54583257 | MS.gene43798:CDS | 35.0% | |
| AAGAATAACATCCTGTTGTC+GGG | + | chr5.1:54585291-54585310 | MS.gene43798:CDS | 35.0% | |
| AATATTACATGCCATCCATC+AGG | - | chr5.1:54585728-54585747 | None:intergenic | 35.0% | |
| ACAGGATGTTATTCTTCGTA+GGG | - | chr5.1:54585287-54585306 | None:intergenic | 35.0% | |
| ACATGCATGCTGAAACAAAA+TGG | + | chr5.1:54586487-54586506 | MS.gene43798:intron | 35.0% | |
| ACATTTACAGAATGACCTTG+AGG | - | chr5.1:54585820-54585839 | None:intergenic | 35.0% | |
| AGAGTATGTTATGCCATGTT+TGG | + | chr5.1:54583601-54583620 | MS.gene43798:intron | 35.0% | |
| AGCCAACAAAATTTGATGGA+GGG | - | chr5.1:54586062-54586081 | None:intergenic | 35.0% | |
| AGCTAATGTAGATGCAATAG+TGG | + | chr5.1:54584077-54584096 | MS.gene43798:intron | 35.0% | |
| AGGAATCAGTGGCTAAATAA+AGG | - | chr5.1:54585375-54585394 | None:intergenic | 35.0% | |
| ATTTGTTCTTGTAAGGACTG+GGG | + | chr5.1:54583701-54583720 | MS.gene43798:intron | 35.0% | |
| CAAAATTCTTACTACGTCAC+AGG | + | chr5.1:54586628-54586647 | MS.gene43798:CDS | 35.0% | |
| CAAGTCAATATCGCAAAAGA+TGG | - | chr5.1:54584544-54584563 | None:intergenic | 35.0% | |
| CAGAAAAACCTCTAAACCTT+TGG | + | chr5.1:54584631-54584650 | MS.gene43798:CDS | 35.0% | |
| CATCAATAAATGTCGGATAC+TGG | + | chr5.1:54583823-54583842 | MS.gene43798:intron | 35.0% | |
| CATGACTATGCACAATTTCT+CGG | - | chr5.1:54586706-54586725 | None:intergenic | 35.0% | |
| CGTATATGGGATTCTATCTT+TGG | + | chr5.1:54586662-54586681 | MS.gene43798:CDS | 35.0% | |
| CTCCAAATCAGTACAACTAA+TGG | - | chr5.1:54585672-54585691 | None:intergenic | 35.0% | |
| CTGGAAAATGCTTTATGGTA+TGG | + | chr5.1:54585904-54585923 | MS.gene43798:CDS | 35.0% | |
| GAAAGCAAAATTGTGGTTTG+TGG | + | chr5.1:54587721-54587740 | MS.gene43798:CDS | 35.0% | |
| GAACAATTACATGAAGGTTG+TGG | - | chr5.1:54585529-54585548 | None:intergenic | 35.0% | |
| GAAGAATAACATCCTGTTGT+CGG | + | chr5.1:54585290-54585309 | MS.gene43798:CDS | 35.0% | |
| GAGTATGTTATGCCATGTTT+GGG | + | chr5.1:54583602-54583621 | MS.gene43798:intron | 35.0% | |
| GATATGTCTGGTATGCTAAT+TGG | - | chr5.1:54586261-54586280 | None:intergenic | 35.0% | |
| GATCATTTCCACAAGTCAAA+AGG | - | chr5.1:54586407-54586426 | None:intergenic | 35.0% | |
| GCATATTTCTCTCCAATAAC+TGG | + | chr5.1:54586602-54586621 | MS.gene43798:CDS | 35.0% | |
| GCTAATGTAGATGCAATAGT+GGG | + | chr5.1:54584078-54584097 | MS.gene43798:intron | 35.0% | |
| GGAAATGAATCCATCATCAT+CGG | - | chr5.1:54587797-54587816 | None:intergenic | 35.0% | |
| GTCTACTCACAGATTGAAAT+CGG | - | chr5.1:54583852-54583871 | None:intergenic | 35.0% | |
| TAGCCAACAAAATTTGATGG+AGG | - | chr5.1:54586063-54586082 | None:intergenic | 35.0% | |
| TGTATCATTCACTTTGTTCC+AGG | + | chr5.1:54585117-54585136 | MS.gene43798:intron | 35.0% | |
| TTGCATATTACGGTGAATCT+AGG | - | chr5.1:54584209-54584228 | None:intergenic | 35.0% | |
| ! | AAGGTTTAGAGGTTTTTCTG+CGG | - | chr5.1:54584631-54584650 | None:intergenic | 35.0% |
| ! | AATGTGAACTTTAGGGAAAG+AGG | - | chr5.1:54583054-54583073 | None:intergenic | 35.0% |
| ! | AGAGTTTTTGCTCGAACTTA+GGG | + | chr5.1:54584983-54585002 | MS.gene43798:intron | 35.0% |
| ! | ATCCCTCCATCAAATTTTGT+TGG | + | chr5.1:54586057-54586076 | MS.gene43798:intron | 35.0% |
| ! | ATTGTGAATCTAGGATAGTG+TGG | - | chr5.1:54584025-54584044 | None:intergenic | 35.0% |
| ! | GATAAAATGAAGAGTGTGTC+TGG | - | chr5.1:54584416-54584435 | None:intergenic | 35.0% |
| ! | GATGCAATAGTGGGAAAAAA+AGG | + | chr5.1:54584087-54584106 | MS.gene43798:intron | 35.0% |
| ! | GATTTGTTCTTGTAAGGACT+GGG | + | chr5.1:54583700-54583719 | MS.gene43798:intron | 35.0% |
| ! | GCGATTTTTCTTATGGGTAT+TGG | + | chr5.1:54583322-54583341 | MS.gene43798:intron | 35.0% |
| ! | TAACCTTCTGTGTCATTACA+GGG | + | chr5.1:54586281-54586300 | MS.gene43798:intron | 35.0% |
| ! | TTTAGGACTATATGGACATG+CGG | - | chr5.1:54586028-54586047 | None:intergenic | 35.0% |
| ! | TTTCTGAGAGTTAGCGTAAT+GGG | - | chr5.1:54583230-54583249 | None:intergenic | 35.0% |
| !! | ACTCTATCTGCTATTTCACA+TGG | + | chr5.1:54584357-54584376 | MS.gene43798:intron | 35.0% |
| !! | CAAGGTTTGTTAATGGTCAT+TGG | + | chr5.1:54583256-54583275 | MS.gene43798:intron | 35.0% |
| !! | CATACCATAAAGCATTTTCC+AGG | - | chr5.1:54585906-54585925 | None:intergenic | 35.0% |
| !! | GGTTTTGATGCTAATAGGAA+AGG | + | chr5.1:54583197-54583216 | MS.gene43798:CDS | 35.0% |
| !! | TAAAGCATTTTCCAGGTGTT+TGG | - | chr5.1:54585899-54585918 | None:intergenic | 35.0% |
| !! | TGATTTGTTCTTGTAAGGAC+TGG | + | chr5.1:54583699-54583718 | MS.gene43798:intron | 35.0% |
| !! | TTTTCTGAGAGTTAGCGTAA+TGG | - | chr5.1:54583231-54583250 | None:intergenic | 35.0% |
| !!! | CTTTTGCGATATTGACTTGA+AGG | + | chr5.1:54584545-54584564 | MS.gene43798:intron | 35.0% |
| !!! | GTATGAGTGTTAGTTTTGTC+CGG | - | chr5.1:54583761-54583780 | None:intergenic | 35.0% |
| !!! | TTTTCAGGTCTCTGTTCATT+TGG | + | chr5.1:54587659-54587678 | MS.gene43798:intron | 35.0% |
| AAAAGGATGTCTGGTTGCAT+TGG | - | chr5.1:54586390-54586409 | None:intergenic | 40.0% | |
| AAAGAGGTTCTACGAGTAAC+CGG | - | chr5.1:54583038-54583057 | None:intergenic | 40.0% | |
| AACACCCTTCAAAGCTGAAT+GGG | + | chr5.1:54586742-54586761 | MS.gene43798:CDS | 40.0% | |
| AAGAAACGTGGTAAGAGGAA+AGG | + | chr5.1:54587754-54587773 | MS.gene43798:CDS | 40.0% | |
| ACAACAGCAAGTGACTCTAA+TGG | - | chr5.1:54586872-54586891 | None:intergenic | 40.0% | |
| ACAACTAATGGTTCCATCTG+AGG | - | chr5.1:54585660-54585679 | None:intergenic | 40.0% | |
| AGCAGAAAAAGAGGAATCAG+TGG | - | chr5.1:54585386-54585405 | None:intergenic | 40.0% | |
| AGGACAATCGTCTTCGTATA+TGG | + | chr5.1:54586648-54586667 | MS.gene43798:CDS | 40.0% | |
| ATCGATGAATCCGATGATGA+TGG | + | chr5.1:54587784-54587803 | MS.gene43798:CDS | 40.0% | |
| ATGTTATGCCATGTTTGGGA+AGG | + | chr5.1:54583606-54583625 | MS.gene43798:intron | 40.0% | |
| ATTGAACCTACACAAAGTGG+TGG | + | chr5.1:54587271-54587290 | MS.gene43798:intron | 40.0% | |
| CAAAATCCAAGCAGACTGAA+TGG | + | chr5.1:54587830-54587849 | MS.gene43798:CDS | 40.0% | |
| CAATTTCCATTCAGTCTGCT+TGG | - | chr5.1:54587839-54587858 | None:intergenic | 40.0% | |
| CACAGAAGGTTAGATATGTC+TGG | - | chr5.1:54586273-54586292 | None:intergenic | 40.0% | |
| CACATACTCCAAAGGTTTAG+AGG | - | chr5.1:54584642-54584661 | None:intergenic | 40.0% | |
| CACTTTGAATTGTCCACATC+GGG | + | chr5.1:54584574-54584593 | MS.gene43798:CDS | 40.0% | |
| CCACTTTGAATTGTCCACAT+CGG | + | chr5.1:54584573-54584592 | MS.gene43798:CDS | 40.0% | |
| CGTTCAAACACATACTCCAA+AGG | - | chr5.1:54584650-54584669 | None:intergenic | 40.0% | |
| GAAGGACGAAAGCAAAATTG+TGG | + | chr5.1:54587714-54587733 | MS.gene43798:CDS | 40.0% | |
| GACGCAATGTTATCAAACAC+CGG | + | chr5.1:54583957-54583976 | MS.gene43798:intron | 40.0% | |
| GCCAAAGGAAAAATCTGAGA+CGG | + | chr5.1:54587684-54587703 | MS.gene43798:CDS | 40.0% | |
| GGACAATCGTCTTCGTATAT+GGG | + | chr5.1:54586649-54586668 | MS.gene43798:CDS | 40.0% | |
| GGACTCTGCCTTTAATAGTA+TGG | + | chr5.1:54587584-54587603 | MS.gene43798:intron | 40.0% | |
| TAACACCCTTCAAAGCTGAA+TGG | + | chr5.1:54586741-54586760 | MS.gene43798:CDS | 40.0% | |
| TAGTAGACGGATAACAAGCT+TGG | + | chr5.1:54585254-54585273 | MS.gene43798:CDS | 40.0% | |
| TATATTGTAGGCGCGCATTT+GGG | + | chr5.1:54586514-54586533 | MS.gene43798:intron | 40.0% | |
| TCTAGTACTCACTCTCTTGT+TGG | + | chr5.1:54587220-54587239 | MS.gene43798:intron | 40.0% | |
| TCTGTTCATTTGGAAGCCAA+AGG | + | chr5.1:54587669-54587688 | MS.gene43798:CDS | 40.0% | |
| TGAGAAGGTTTACGAGAAAG+TGG | + | chr5.1:54585445-54585464 | MS.gene43798:CDS | 40.0% | |
| TGCATCACCATTCCTATGAT+TGG | - | chr5.1:54586319-54586338 | None:intergenic | 40.0% | |
| TGTTCCAGGCTATTGATCAT+AGG | + | chr5.1:54585131-54585150 | MS.gene43798:intron | 40.0% | |
| TTATAGGTGTGTAAGAAGCC+TGG | + | chr5.1:54583355-54583374 | MS.gene43798:intron | 40.0% | |
| TTGAACCTACACAAAGTGGT+GGG | + | chr5.1:54587272-54587291 | MS.gene43798:intron | 40.0% | |
| ! | ACCGTCTCAGATTTTTCCTT+TGG | - | chr5.1:54587688-54587707 | None:intergenic | 40.0% |
| ! | AGGTTTAGAGGTTTTTCTGC+GGG | - | chr5.1:54584630-54584649 | None:intergenic | 40.0% |
| ! | CATTCAGTCTGCTTGGATTT+TGG | - | chr5.1:54587832-54587851 | None:intergenic | 40.0% |
| ! | CTAACCTTCTGTGTCATTAC+AGG | + | chr5.1:54586280-54586299 | MS.gene43798:intron | 40.0% |
| ! | GAGAGTTTTTGCTCGAACTT+AGG | + | chr5.1:54584982-54585001 | MS.gene43798:intron | 40.0% |
| ! | GGTGTTTGATAACATTGCGT+CGG | - | chr5.1:54583958-54583977 | None:intergenic | 40.0% |
| ! | GTTGAAAAGTGAGTGTTGCT+AGG | + | chr5.1:54587341-54587360 | MS.gene43798:intron | 40.0% |
| ! | TGGTCTGGAATCACACATTT+GGG | - | chr5.1:54585207-54585226 | None:intergenic | 40.0% |
| ! | TTGGTCTGGAATCACACATT+TGG | - | chr5.1:54585208-54585227 | None:intergenic | 40.0% |
| !! | AGTTGTACTGATTTGGAGAC+TGG | + | chr5.1:54585674-54585693 | MS.gene43798:CDS | 40.0% |
| !! | CAGCTTTGAAGGGTGTTAAA+TGG | - | chr5.1:54586739-54586758 | None:intergenic | 40.0% |
| !! | TTAGAGTCACTTGCTGTTGT+TGG | + | chr5.1:54586872-54586891 | MS.gene43798:CDS | 40.0% |
| AAGCTTATTCACCGGACTGA+TGG | - | chr5.1:54587005-54587024 | None:intergenic | 45.0% | |
| AATGGTTCCATCTGAGGATG+CGG | - | chr5.1:54585654-54585673 | None:intergenic | 45.0% | |
| ACGTCTACATCCGTGTTTAC+AGG | - | chr5.1:54583733-54583752 | None:intergenic | 45.0% | |
| ACTATGCACAATTTCTCGGC+TGG | - | chr5.1:54586702-54586721 | None:intergenic | 45.0% | |
| ACTTAGGCTTACCGTAGGAA+TGG | - | chr5.1:54584687-54584706 | None:intergenic | 45.0% | |
| AGAAAGGACAACTTGGAGTC+TGG | + | chr5.1:54585417-54585436 | MS.gene43798:intron | 45.0% | |
| AGATACAAGTACAGGGCAGT+TGG | + | chr5.1:54586949-54586968 | MS.gene43798:CDS | 45.0% | |
| ATGCGGTCCAATCATAGGAA+TGG | + | chr5.1:54586309-54586328 | MS.gene43798:CDS | 45.0% | |
| CAAAGCTGAATGGGATCCAA+AGG | + | chr5.1:54586751-54586770 | MS.gene43798:CDS | 45.0% | |
| CAATCTGTGAGTAGACTGTG+TGG | + | chr5.1:54583856-54583875 | MS.gene43798:intron | 45.0% | |
| CCACAAGTCAAAAGGATGTC+TGG | - | chr5.1:54586399-54586418 | None:intergenic | 45.0% | |
| CCATGTTTGGGAAGGAATTG+AGG | + | chr5.1:54583614-54583633 | MS.gene43798:intron | 45.0% | |
| CCGATGTGGACAATTCAAAG+TGG | - | chr5.1:54584576-54584595 | None:intergenic | 45.0% | |
| CCTCAATTCCTTCCCAAACA+TGG | - | chr5.1:54583617-54583636 | None:intergenic | 45.0% | |
| CTATATTGTAGGCGCGCATT+TGG | + | chr5.1:54586513-54586532 | MS.gene43798:intron | 45.0% | |
| CTATGCACAATTTCTCGGCT+GGG | - | chr5.1:54586701-54586720 | None:intergenic | 45.0% | |
| CTGAGAAGAAACGTGGTAAG+AGG | + | chr5.1:54587749-54587768 | MS.gene43798:CDS | 45.0% | |
| CTGGTTGCATTGGATTGCAA+TGG | - | chr5.1:54586380-54586399 | None:intergenic | 45.0% | |
| GAAAGGACAACTTGGAGTCT+GGG | + | chr5.1:54585418-54585437 | MS.gene43798:intron | 45.0% | |
| GAACATCACAACCATCAGTC+CGG | + | chr5.1:54586991-54587010 | MS.gene43798:CDS | 45.0% | |
| GAATGACTTAGGCTTACCGT+AGG | - | chr5.1:54584692-54584711 | None:intergenic | 45.0% | |
| GACATGCGGAGACAGTAAAA+CGG | - | chr5.1:54586014-54586033 | None:intergenic | 45.0% | |
| GACTGATGGTTGTGATGTTC+GGG | - | chr5.1:54586991-54587010 | None:intergenic | 45.0% | |
| GATATGCGTCACTTAGAAGC+TGG | + | chr5.1:54586536-54586555 | MS.gene43798:CDS | 45.0% | |
| GCTAAGACATGCCATTCCTA+CGG | + | chr5.1:54584673-54584692 | MS.gene43798:CDS | 45.0% | |
| GGAAAAGCTGAGAAGAAACG+TGG | + | chr5.1:54587742-54587761 | MS.gene43798:CDS | 45.0% | |
| GGACTGATGGTTGTGATGTT+CGG | - | chr5.1:54586992-54587011 | None:intergenic | 45.0% | |
| GGATGTTATTCTTCGTAGGG+TGG | - | chr5.1:54585284-54585303 | None:intergenic | 45.0% | |
| GGGGAAAAAGCCTGTAAACA+CGG | + | chr5.1:54583720-54583739 | MS.gene43798:intron | 45.0% | |
| GTCTCCTATGATCAATAGCC+TGG | - | chr5.1:54585138-54585157 | None:intergenic | 45.0% | |
| GTGATGATATCCTGGCAACT+GGG | + | chr5.1:54587032-54587051 | MS.gene43798:CDS | 45.0% | |
| TAACAACACGCTTGTGCTCA+AGG | - | chr5.1:54586577-54586596 | None:intergenic | 45.0% | |
| TAACCTTATCTCCCGACAAC+AGG | - | chr5.1:54585305-54585324 | None:intergenic | 45.0% | |
| TAAGAAGCCTGGTCATGAAG+CGG | + | chr5.1:54583366-54583385 | MS.gene43798:CDS | 45.0% | |
| TAGGAATGGCATGTCTTAGC+TGG | - | chr5.1:54584673-54584692 | None:intergenic | 45.0% | |
| TATGTCCCACCACTTTGTGT+AGG | - | chr5.1:54587280-54587299 | None:intergenic | 45.0% | |
| TGAACCTGAATCCTGATGGA+TGG | + | chr5.1:54585714-54585733 | MS.gene43798:CDS | 45.0% | |
| TGATAACAGCGCAACTCACT+TGG | - | chr5.1:54585227-54585246 | None:intergenic | 45.0% | |
| TGTAAACACGGATGTAGACG+TGG | + | chr5.1:54583732-54583751 | MS.gene43798:intron | 45.0% | |
| ! | CCATCAGGATTCAGGTTCAT+CGG | - | chr5.1:54585713-54585732 | None:intergenic | 45.0% |
| ! | GGTTTAGAGGTTTTTCTGCG+GGG | - | chr5.1:54584629-54584648 | None:intergenic | 45.0% |
| ! | GTGAATCTAGGATAGTGTGG+CGG | - | chr5.1:54584022-54584041 | None:intergenic | 45.0% |
| ! | TGGATCCCATTCAGCTTTGA+AGG | - | chr5.1:54586750-54586769 | None:intergenic | 45.0% |
| !! | AGAAGAAGAAGAAGCACTCG+AGG | + | chr5.1:54583115-54583134 | MS.gene43798:CDS | 45.0% |
| !! | GGATCCCATTCAGCTTTGAA+GGG | - | chr5.1:54586749-54586768 | None:intergenic | 45.0% |
| !! | TACTGAGCATGGTGTTGTTC+CGG | + | chr5.1:54584601-54584620 | MS.gene43798:CDS | 45.0% |
| !! | TGGAGTCTGGGATTTTGAGA+AGG | + | chr5.1:54585430-54585449 | MS.gene43798:CDS | 45.0% |
| !!! | CCAGACATCCTTTTGACTTG+TGG | + | chr5.1:54586396-54586415 | MS.gene43798:CDS | 45.0% |
| !!! | GGATTTTGGCTTCTTGAGCT+TGG | - | chr5.1:54587818-54587837 | None:intergenic | 45.0% |
| AAGAAGCCTGGTCATGAAGC+GGG | + | chr5.1:54583367-54583386 | MS.gene43798:CDS | 50.0% | |
| ATTGTCTCGCTGCTCGACAA+AGG | + | chr5.1:54587855-54587874 | MS.gene43798:CDS | 50.0% | |
| CATCCTGTTGTCGGGAGATA+AGG | + | chr5.1:54585299-54585318 | MS.gene43798:CDS | 50.0% | |
| CATGCCATCCATCAGGATTC+AGG | - | chr5.1:54585721-54585740 | None:intergenic | 50.0% | |
| CCGATGAACCTGAATCCTGA+TGG | + | chr5.1:54585710-54585729 | MS.gene43798:CDS | 50.0% | |
| CGACCCTGTAATGACACAGA+AGG | - | chr5.1:54586287-54586306 | None:intergenic | 50.0% | |
| CGTGATGATATCCTGGCAAC+TGG | + | chr5.1:54587031-54587050 | MS.gene43798:CDS | 50.0% | |
| CTTGTGCTCAAGGCTACAGA+GGG | - | chr5.1:54586567-54586586 | None:intergenic | 50.0% | |
| GTCATTACAGGGTCGACATG+CGG | + | chr5.1:54586292-54586311 | MS.gene43798:intron | 50.0% | |
| GTCTATTCCGCATCCTCAGA+TGG | + | chr5.1:54585644-54585663 | MS.gene43798:CDS | 50.0% | |
| TCGACATGCGGTCCAATCAT+AGG | + | chr5.1:54586304-54586323 | MS.gene43798:CDS | 50.0% | |
| TTGAAACCCGCTTCATGACC+AGG | - | chr5.1:54583376-54583395 | None:intergenic | 50.0% | |
| TTTACTAGGGGCCAAACACC+TGG | + | chr5.1:54585885-54585904 | MS.gene43798:intron | 50.0% | |
| ! | AGGATTCAGGTTCATCGGAG+AGG | - | chr5.1:54585708-54585727 | None:intergenic | 50.0% |
| ! | GGAAAAATCTGAGACGGTCG+AGG | + | chr5.1:54587690-54587709 | MS.gene43798:CDS | 50.0% |
| ! | GGTCATGAAGCGGGTTTCAA+GGG | + | chr5.1:54583376-54583395 | MS.gene43798:CDS | 50.0% |
| ! | TGAGAAAGGTCTTGTGCTCG+TGG | + | chr5.1:54585937-54585956 | MS.gene43798:CDS | 50.0% |
| ! | TGGTCATGAAGCGGGTTTCA+AGG | + | chr5.1:54583375-54583394 | MS.gene43798:CDS | 50.0% |
| !! | GCAGTTGGTAGCAGAAGTCA+TGG | + | chr5.1:54586964-54586983 | MS.gene43798:CDS | 50.0% |
| ACAGCGCAACTCACTTGGTC+TGG | - | chr5.1:54585222-54585241 | None:intergenic | 55.0% | |
| ACCTAGAACTCCCAGTTGCC+AGG | - | chr5.1:54587045-54587064 | None:intergenic | 55.0% | |
| ACGGATGTAGACGTGGACAC+CGG | + | chr5.1:54583739-54583758 | MS.gene43798:intron | 55.0% | |
| CATCGGGTCACTACTGAGCA+TGG | + | chr5.1:54584590-54584609 | MS.gene43798:CDS | 55.0% | |
| GCTTGTGCTCAAGGCTACAG+AGG | - | chr5.1:54586568-54586587 | None:intergenic | 55.0% | |
| GTGCTCGTGGCCGATAACTT+TGG | + | chr5.1:54585950-54585969 | MS.gene43798:CDS | 55.0% | |
| TCCTGGCAACTGGGAGTTCT+AGG | + | chr5.1:54587041-54587060 | MS.gene43798:CDS | 55.0% | |
| TGCTCAGTAGTGACCCGATG+TGG | - | chr5.1:54584590-54584609 | None:intergenic | 55.0% | |
| ! | ATCTGAGACGGTCGAGGAGA+AGG | + | chr5.1:54587696-54587715 | MS.gene43798:CDS | 55.0% |
| TGACCTTGAGGAGACTCGCG+CGG | - | chr5.1:54585808-54585827 | None:intergenic | 60.0% | |
| ! | GAGGTTTTTCTGCGGGGTGC+CGG | - | chr5.1:54584623-54584642 | None:intergenic | 60.0% |
| TGACCGCGCGAGTCTCCTCA+AGG | + | chr5.1:54585802-54585821 | MS.gene43798:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54583029 | 54587888 | 54583029 | ID=MS.gene43798 |
| chr5.1 | mRNA | 54583029 | 54587888 | 54583029 | ID=MS.gene43798.t1;Parent=MS.gene43798 |
| chr5.1 | exon | 54583029 | 54583259 | 54583029 | ID=MS.gene43798.t1.exon1;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54583029 | 54583259 | 54583029 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54583361 | 54583451 | 54583361 | ID=MS.gene43798.t1.exon2;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54583361 | 54583451 | 54583361 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54584567 | 54584694 | 54584567 | ID=MS.gene43798.t1.exon3;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54584567 | 54584694 | 54584567 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54585198 | 54585320 | 54585198 | ID=MS.gene43798.t1.exon4;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54585198 | 54585320 | 54585198 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54585419 | 54585507 | 54585419 | ID=MS.gene43798.t1.exon5;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54585419 | 54585507 | 54585419 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54585619 | 54585739 | 54585619 | ID=MS.gene43798.t1.exon6;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54585619 | 54585739 | 54585619 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54585893 | 54585984 | 54585893 | ID=MS.gene43798.t1.exon7;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54585893 | 54585984 | 54585893 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54586302 | 54586431 | 54586302 | ID=MS.gene43798.t1.exon8;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54586302 | 54586431 | 54586302 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54586524 | 54586772 | 54586524 | ID=MS.gene43798.t1.exon9;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54586524 | 54586772 | 54586524 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54586866 | 54587062 | 54586866 | ID=MS.gene43798.t1.exon10;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54586866 | 54587062 | 54586866 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| chr5.1 | exon | 54587666 | 54587888 | 54587666 | ID=MS.gene43798.t1.exon11;Parent=MS.gene43798.t1 |
| chr5.1 | CDS | 54587666 | 54587888 | 54587666 | ID=cds.MS.gene43798.t1;Parent=MS.gene43798.t1 |
| Gene Sequence |
| Protein sequence |
