Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43890.t1 | XP_003613278.1 | 97.8 | 325 | 5 | 1 | 1 | 325 | 1 | 323 | 1.00E-183 | 652.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43890.t1 | K4PW38 | 35.4 | 246 | 118 | 8 | 14 | 245 | 31 | 249 | 6.0e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43890.t1 | G7K2R0 | 97.8 | 325 | 5 | 1 | 1 | 325 | 1 | 323 | 7.5e-184 | 652.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene43890 | 0.8452 | 4.71E-59 | -1.69E-46 |
| MS.gene060137 | MS.gene43890 | -0.802853 | 4.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43890.t1 | MTR_5g034840 | 97.846 | 325 | 5 | 1 | 1 | 325 | 1 | 323 | 0.0 | 659 |
| MS.gene43890.t1 | MTR_1g018810 | 51.185 | 211 | 80 | 5 | 13 | 217 | 11 | 204 | 3.59e-70 | 221 |
| MS.gene43890.t1 | MTR_2g078750 | 38.537 | 205 | 99 | 6 | 14 | 218 | 20 | 197 | 4.26e-36 | 135 |
| MS.gene43890.t1 | MTR_2g078750 | 40.000 | 155 | 73 | 3 | 64 | 218 | 1 | 135 | 3.33e-28 | 112 |
| MS.gene43890.t1 | MTR_2g078750 | 42.553 | 94 | 54 | 0 | 125 | 218 | 11 | 104 | 4.74e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43890.t1 | AT1G60060 | 76.452 | 310 | 44 | 7 | 1 | 284 | 1 | 307 | 6.79e-161 | 454 |
| MS.gene43890.t1 | AT1G60060 | 72.453 | 265 | 44 | 7 | 46 | 284 | 6 | 267 | 3.63e-124 | 360 |
| MS.gene43890.t1 | AT5G53900 | 38.333 | 240 | 118 | 7 | 14 | 244 | 21 | 239 | 3.92e-39 | 142 |
| MS.gene43890.t1 | AT3G15240 | 37.073 | 205 | 107 | 4 | 14 | 218 | 34 | 216 | 3.03e-38 | 139 |
| MS.gene43890.t1 | AT5G53900 | 39.844 | 128 | 67 | 2 | 126 | 244 | 1 | 127 | 1.74e-20 | 89.7 |
| MS.gene43890.t1 | AT5G53900 | 39.844 | 128 | 67 | 2 | 126 | 244 | 1 | 127 | 1.74e-20 | 89.7 |
| MS.gene43890.t1 | AT1G06150 | 33.333 | 198 | 86 | 10 | 12 | 207 | 3 | 156 | 6.13e-18 | 85.1 |
| MS.gene43890.t1 | AT1G06150 | 33.333 | 198 | 86 | 10 | 12 | 207 | 3 | 156 | 6.18e-18 | 85.1 |
| MS.gene43890.t1 | AT2G31280 | 30.928 | 194 | 83 | 9 | 15 | 207 | 6 | 149 | 5.48e-15 | 76.3 |
| MS.gene43890.t1 | AT2G31280 | 30.928 | 194 | 83 | 9 | 15 | 207 | 6 | 149 | 5.90e-15 | 76.3 |
| MS.gene43890.t1 | AT2G27230 | 27.488 | 211 | 105 | 8 | 13 | 218 | 4 | 171 | 1.53e-13 | 72.0 |
| MS.gene43890.t1 | AT2G27230 | 27.488 | 211 | 105 | 8 | 13 | 218 | 4 | 171 | 1.53e-13 | 72.0 |
Find 68 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAGCTCATCATCAGTTTA+TGG | 0.128324 | 5.2:-25126019 | MS.gene43890:CDS |
| CAATCACCAGTGTTTATTTC+AGG | 0.239507 | 5.2:+25126043 | None:intergenic |
| TCACATGAGATCTATAACTA+TGG | 0.263874 | 5.2:-25125938 | MS.gene43890:CDS |
| TTGGGTGGAGGGTAGTTTCT+AGG | 0.275012 | 5.2:+25126506 | None:intergenic |
| AACACAAACACAACATGTTT+TGG | 0.280192 | 5.2:-25124657 | MS.gene43890:CDS |
| AGAGAAGGTGTTGTTCAATT+AGG | 0.283607 | 5.2:-25125367 | MS.gene43890:CDS |
| AAATTAATTTCTTGATCATT+AGG | 0.297602 | 5.2:+25125739 | None:intergenic |
| CAACGAGCATTGGAATTTAC+AGG | 0.318102 | 5.2:-25124623 | MS.gene43890:CDS |
| TATATGCATGCACAGGATAT+TGG | 0.324411 | 5.2:-25126107 | MS.gene43890:intron |
| AGGATATTGGTTTGGGAAGA+TGG | 0.329021 | 5.2:-25126094 | MS.gene43890:CDS |
| ATTGATGGAGTTACTTTCAT+TGG | 0.336300 | 5.2:+25124746 | None:intergenic |
| TCAGTTCTTGTCTGGTATAA+AGG | 0.362612 | 5.2:-25125531 | MS.gene43890:intron |
| GCATGCACAGGATATTGGTT+TGG | 0.384339 | 5.2:-25126102 | MS.gene43890:intron |
| GACATCTTGAAGAAAAGTTC+AGG | 0.396788 | 5.2:+25125959 | None:intergenic |
| CATGCACAGGATATTGGTTT+GGG | 0.400265 | 5.2:-25126101 | MS.gene43890:intron |
| TCATCATCAGCATACCCTTA+TGG | 0.403770 | 5.2:-25124863 | MS.gene43890:CDS |
| GCTTCAAGACTACTCATTGA+TGG | 0.406362 | 5.2:+25124731 | None:intergenic |
| TGGGAAGCTCAGTTCTTGTC+TGG | 0.414012 | 5.2:-25125539 | MS.gene43890:CDS |
| CTAGCTCATCATCAGTTTAT+GGG | 0.418675 | 5.2:-25126018 | MS.gene43890:CDS |
| CCCTATTTAATGTCATCATT+CGG | 0.422063 | 5.2:+25123690 | None:intergenic |
| TTTACAGCACCCTAGGACTT+GGG | 0.440440 | 5.2:-25125558 | MS.gene43890:intron |
| CAAGAGGAAACAGAAGGAAT+TGG | 0.444449 | 5.2:-25126249 | MS.gene43890:intron |
| TGTTCTGATGGACCACCATA+AGG | 0.450763 | 5.2:+25124848 | None:intergenic |
| CTATGATCTTCTTACTTGGG+TGG | 0.478789 | 5.2:+25126491 | None:intergenic |
| TGATCTTCTTACTTGGGTGG+AGG | 0.479359 | 5.2:+25126494 | None:intergenic |
| GAACAATGGCACAACTTTCA+AGG | 0.484632 | 5.2:-25124830 | MS.gene43890:CDS |
| GTTGGATAATGAAGAAGAAG+AGG | 0.487343 | 5.2:-25124573 | MS.gene43890:intron |
| AACTGAGCTTCCCAAGTCCT+AGG | 0.490005 | 5.2:+25125548 | None:intergenic |
| AGCTACATTGAAAGCATACC+AGG | 0.501005 | 5.2:-25124905 | MS.gene43890:CDS |
| GTTCTGATGGACCACCATAA+GGG | 0.509808 | 5.2:+25124849 | None:intergenic |
| GAGATCTATAACTATGGAGA+AGG | 0.511952 | 5.2:-25125932 | MS.gene43890:CDS |
| TAATATAGGTGGGAAGGACA+AGG | 0.515798 | 5.2:-25126286 | MS.gene43890:intron |
| TAAGGGTATGCTGATGATGA+TGG | 0.520173 | 5.2:+25124866 | None:intergenic |
| GATCTTCTTACTTGGGTGGA+GGG | 0.521140 | 5.2:+25126495 | None:intergenic |
| TGTGTATAATATAGGTGGGA+AGG | 0.521340 | 5.2:-25126292 | MS.gene43890:intron |
| AACACAACAACAACGAGCAT+TGG | 0.528793 | 5.2:-25124633 | MS.gene43890:CDS |
| AAGTTGTGCCATTGTTCTGA+TGG | 0.534050 | 5.2:+25124836 | None:intergenic |
| GGAAGAACATCTTACTCCAT+TGG | 0.536644 | 5.2:-25126618 | MS.gene43890:CDS |
| AAAAGTCGCGAAAGAAGAGT+TGG | 0.538902 | 5.2:-25124591 | MS.gene43890:CDS |
| TCAGGTTGAAGACCTTGGTA+AGG | 0.540371 | 5.2:+25125977 | None:intergenic |
| CCATAAACTGATGATGAGCT+AGG | 0.545039 | 5.2:+25126019 | None:intergenic |
| GGGTGTGGAAGTAGCACTCC+TGG | 0.547961 | 5.2:+25124887 | None:intergenic |
| AAAGTTCAGGTTGAAGACCT+TGG | 0.548638 | 5.2:+25125972 | None:intergenic |
| AAATTAATTTCTTGTCAGCA+TGG | 0.554884 | 5.2:-25125726 | MS.gene43890:CDS |
| ACCTTCTCTAACAGCAATGA+GGG | 0.566133 | 5.2:+25125381 | None:intergenic |
| AGAAGATGAGTAACAGCCAA+TGG | 0.572438 | 5.2:+25126602 | None:intergenic |
| CTGCAGATCATAGTCACAAG+TGG | 0.577564 | 5.2:-25125774 | MS.gene43890:CDS |
| CATCCATGAAAATTCTCAGT+GGG | 0.580339 | 5.2:-25126555 | MS.gene43890:CDS |
| TATGCTGATGATGATGGGTG+TGG | 0.582762 | 5.2:+25124872 | None:intergenic |
| AATATAGGTGGGAAGGACAA+GGG | 0.583406 | 5.2:-25126285 | MS.gene43890:intron |
| ACTGAGCTTCCCAAGTCCTA+GGG | 0.584163 | 5.2:+25125549 | None:intergenic |
| CACCTTCTCTAACAGCAATG+AGG | 0.591099 | 5.2:+25125380 | None:intergenic |
| GCCCTCATTGCTGTTAGAGA+AGG | 0.593948 | 5.2:-25125382 | MS.gene43890:CDS |
| ATATAGGTGGGAAGGACAAG+GGG | 0.594932 | 5.2:-25126284 | MS.gene43890:intron |
| AGCATTGCACCACAGCATCA+AGG | 0.600171 | 5.2:-25124806 | MS.gene43890:CDS |
| GGGGCATATGATAGATCAAG+AGG | 0.613030 | 5.2:-25126265 | MS.gene43890:CDS |
| TGTTGTGGTGGAACAACTGA+AGG | 0.615956 | 5.2:+25124692 | None:intergenic |
| AGATCTATAACTATGGAGAA+GGG | 0.626888 | 5.2:-25125931 | MS.gene43890:intron |
| TCAATTAGGAGCTGTTCACA+AGG | 0.628502 | 5.2:-25125353 | MS.gene43890:intron |
| ATAGATCAAGAGGAAACAGA+AGG | 0.628702 | 5.2:-25126255 | MS.gene43890:CDS |
| AAGGGTATGCTGATGATGAT+GGG | 0.632300 | 5.2:+25124867 | None:intergenic |
| AATTGATCACCTTGATGCTG+TGG | 0.645054 | 5.2:+25124797 | None:intergenic |
| GAATTAATTCAACCTTACCA+AGG | 0.657107 | 5.2:-25125989 | MS.gene43890:CDS |
| ATGGTGGTCCATCAGAACAA+TGG | 0.666115 | 5.2:-25124844 | MS.gene43890:CDS |
| GATTGAAGACTTGAGCTATG+TGG | 0.668398 | 5.2:-25124948 | MS.gene43890:CDS |
| TCATCAGCATACCCTTATGG+TGG | 0.673613 | 5.2:-25124860 | MS.gene43890:CDS |
| GCAGCACCTGAAATAAACAC+TGG | 0.697600 | 5.2:-25126049 | MS.gene43890:CDS |
| GCATCCATGAAAATTCTCAG+TGG | 0.703195 | 5.2:-25126556 | MS.gene43890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAATTAATAATTAT+TGG | + | chr5.2:25126235-25126254 | None:intergenic | 0.0% |
| !! | AATTGAATTAAATTAAAGAA+AGG | + | chr5.2:25124898-25124917 | None:intergenic | 10.0% |
| !! | ACATAAAAAATAGTATAAAA+AGG | + | chr5.2:25126596-25126615 | None:intergenic | 10.0% |
| !!! | ATACTATTTTTTATGTATTT+AGG | - | chr5.2:25126600-25126619 | MS.gene43890:CDS | 10.0% |
| !!! | TACTATTTTTTATGTATTTA+GGG | - | chr5.2:25126601-25126620 | MS.gene43890:CDS | 10.0% |
| !!! | TATTAGTTAATTAGATTTTA+TGG | - | chr5.2:25124506-25124525 | MS.gene43890:intron | 10.0% |
| !! | AAATTAATTTCTTGATCATT+AGG | + | chr5.2:25124589-25124608 | None:intergenic | 15.0% |
| !! | ACTTGATTATAAAAAAACAA+TGG | - | chr5.2:25124127-25124146 | MS.gene43890:intron | 15.0% |
| !!! | AAATATTTATTTGAGATTCT+GGG | - | chr5.2:25126329-25126348 | MS.gene43890:intron | 15.0% |
| !!! | ATGTTTTTTGTGTATAATAT+AGG | - | chr5.2:25124025-25124044 | MS.gene43890:intron | 15.0% |
| !!! | TAAATATTTATTTGAGATTC+TGG | - | chr5.2:25126328-25126347 | MS.gene43890:intron | 15.0% |
| !!! | TTTTGTGATAACTATATTAT+TGG | - | chr5.2:25126276-25126295 | MS.gene43890:CDS | 15.0% |
| !! | AATGGATCAAACAATAATAA+TGG | - | chr5.2:25125864-25125883 | MS.gene43890:intron | 20.0% |
| !! | CATAAAAAATCATGATATCA+TGG | - | chr5.2:25125240-25125259 | MS.gene43890:intron | 20.0% |
| !! | CTGGTAATAATTTAAGAAAA+TGG | + | chr5.2:25125156-25125175 | None:intergenic | 20.0% |
| !! | GTTGCATATATATATATATG+AGG | - | chr5.2:25123936-25123955 | MS.gene43890:intron | 20.0% |
| !!! | AAATAAAAGTATGTGAATGA+GGG | + | chr5.2:25124856-25124875 | None:intergenic | 20.0% |
| !!! | AGTTTTAACTTTAAGCAAAT+AGG | - | chr5.2:25124481-25124500 | MS.gene43890:intron | 20.0% |
| !!! | TAAATAAAAGTATGTGAATG+AGG | + | chr5.2:25124857-25124876 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTATAATATAGGT+GGG | - | chr5.2:25124029-25124048 | MS.gene43890:intron | 20.0% |
| !!! | TTTTTTGTGTATAATATAGG+TGG | - | chr5.2:25124028-25124047 | MS.gene43890:intron | 20.0% |
| ! | AAATTAATTTCTTGTCAGCA+TGG | - | chr5.2:25124599-25124618 | MS.gene43890:CDS | 25.0% |
| ! | AACTAGATATATCCATACTA+AGG | - | chr5.2:25126528-25126547 | MS.gene43890:CDS | 25.0% |
| ! | GAAATCATTCTATCTATTTC+AGG | + | chr5.2:25124746-25124765 | None:intergenic | 25.0% |
| ! | TTTGATTGAGTGAGTATAAT+TGG | + | chr5.2:25125333-25125352 | None:intergenic | 25.0% |
| !! | TCAATCAAATTTTGTCTCTA+TGG | - | chr5.2:25125344-25125363 | MS.gene43890:intron | 25.0% |
| !! | TTAATTAGATTTTATGGAGC+AGG | - | chr5.2:25124512-25124531 | MS.gene43890:intron | 25.0% |
| !! | TTTTGTCTCTATGGAATTTA+AGG | - | chr5.2:25125353-25125372 | MS.gene43890:intron | 25.0% |
| !!! | AAAAAACAAAAGTACCTTGA+AGG | + | chr5.2:25126473-25126492 | None:intergenic | 25.0% |
| !!! | GTTTGATTTTGAATTTGTTG+TGG | + | chr5.2:25125651-25125670 | None:intergenic | 25.0% |
| AGATCTATAACTATGGAGAA+GGG | - | chr5.2:25124394-25124413 | MS.gene43890:intron | 30.0% | |
| GAATTAATTCAACCTTACCA+AGG | - | chr5.2:25124336-25124355 | MS.gene43890:intron | 30.0% | |
| GTAGTGTATTGTAGTATGAA+GGG | - | chr5.2:25126037-25126056 | MS.gene43890:CDS | 30.0% | |
| GTGAGAGAGTTATTAATGTT+AGG | - | chr5.2:25125955-25125974 | MS.gene43890:CDS | 30.0% | |
| TCACATGAGATCTATAACTA+TGG | - | chr5.2:25124387-25124406 | MS.gene43890:intron | 30.0% | |
| TGCATATTTCAGTTTCTTCT+TGG | - | chr5.2:25126015-25126034 | MS.gene43890:CDS | 30.0% | |
| TGTTAGACACAAACATAAGT+CGG | + | chr5.2:25125094-25125113 | None:intergenic | 30.0% | |
| TTGCTATGATCTTCTTACTT+GGG | + | chr5.2:25123840-25123859 | None:intergenic | 30.0% | |
| ! | AACACAAACACAACATGTTT+TGG | - | chr5.2:25125668-25125687 | MS.gene43890:intron | 30.0% |
| ! | AACCATGTTTGAGATAACAA+AGG | + | chr5.2:25125010-25125029 | None:intergenic | 30.0% |
| ! | ACCATGTTTGAGATAACAAA+GGG | + | chr5.2:25125009-25125028 | None:intergenic | 30.0% |
| ! | ATTGATGGAGTTACTTTCAT+TGG | + | chr5.2:25125582-25125601 | None:intergenic | 30.0% |
| ! | TATTTATTTGAGATTCTGGG+TGG | - | chr5.2:25126332-25126351 | MS.gene43890:intron | 30.0% |
| ! | TTTCAGATTTAAGACGTGTT+TGG | - | chr5.2:25125065-25125084 | MS.gene43890:intron | 30.0% |
| ! | TTTGCTATGATCTTCTTACT+TGG | + | chr5.2:25123841-25123860 | None:intergenic | 30.0% |
| !!! | GTGCAATGTTTTAAAGACAA+AGG | + | chr5.2:25125284-25125303 | None:intergenic | 30.0% |
| !!! | TGATTTTGAATTTGTTGTGG+TGG | + | chr5.2:25125648-25125667 | None:intergenic | 30.0% |
| ACAATCTTCACACATTTGCA+TGG | + | chr5.2:25126084-25126103 | None:intergenic | 35.0% | |
| ATAGATCAAGAGGAAACAGA+AGG | - | chr5.2:25124070-25124089 | MS.gene43890:intron | 35.0% | |
| ATGAAACACAACACTGATAC+TGG | + | chr5.2:25125175-25125194 | None:intergenic | 35.0% | |
| CAATCACCAGTGTTTATTTC+AGG | + | chr5.2:25124285-25124304 | None:intergenic | 35.0% | |
| CACACATTTGCATGGAATAA+TGG | + | chr5.2:25126076-25126095 | None:intergenic | 35.0% | |
| CATCAAGATCATCTTGGAAA+TGG | - | chr5.2:25125846-25125865 | MS.gene43890:intron | 35.0% | |
| CATCCATGAAAATTCTCAGT+GGG | - | chr5.2:25123770-25123789 | MS.gene43890:intron | 35.0% | |
| CATTTCCAAGATGATCTTGA+TGG | + | chr5.2:25125848-25125867 | None:intergenic | 35.0% | |
| CATTTCCATCAAGATCATCT+TGG | - | chr5.2:25125840-25125859 | MS.gene43890:intron | 35.0% | |
| CCAAGTACAATGTAGTAGAT+TGG | + | chr5.2:25126154-25126173 | None:intergenic | 35.0% | |
| CCAATCTACTACATTGTACT+TGG | - | chr5.2:25126151-25126170 | MS.gene43890:intron | 35.0% | |
| CTAGCTCATCATCAGTTTAT+GGG | - | chr5.2:25124307-25124326 | MS.gene43890:intron | 35.0% | |
| CTCTCTCACTACAATATGTT+AGG | + | chr5.2:25125944-25125963 | None:intergenic | 35.0% | |
| GACATCTTGAAGAAAAGTTC+AGG | + | chr5.2:25124369-25124388 | None:intergenic | 35.0% | |
| GAGATCTATAACTATGGAGA+AGG | - | chr5.2:25124393-25124412 | MS.gene43890:intron | 35.0% | |
| GGTAGTGTATTGTAGTATGA+AGG | - | chr5.2:25126036-25126055 | MS.gene43890:CDS | 35.0% | |
| GTATCAGTGTTGTGTTTCAT+AGG | - | chr5.2:25125175-25125194 | MS.gene43890:intron | 35.0% | |
| GTTGGATAATGAAGAAGAAG+AGG | - | chr5.2:25125752-25125771 | MS.gene43890:CDS | 35.0% | |
| TAGCCAAATACATACCTTCA+AGG | - | chr5.2:25126456-25126475 | MS.gene43890:intron | 35.0% | |
| TATATGCATGCACAGGATAT+TGG | - | chr5.2:25124218-25124237 | MS.gene43890:intron | 35.0% | |
| TCAGTTCTTGTCTGGTATAA+AGG | - | chr5.2:25124794-25124813 | MS.gene43890:CDS | 35.0% | |
| TCTATGTTATATGCATGCAC+AGG | - | chr5.2:25124211-25124230 | MS.gene43890:intron | 35.0% | |
| TGAGATAAACTGCCTTAGTA+TGG | + | chr5.2:25126543-25126562 | None:intergenic | 35.0% | |
| TGTGTATAATATAGGTGGGA+AGG | - | chr5.2:25124033-25124052 | MS.gene43890:intron | 35.0% | |
| ! | AAACCCACTGAGAATTTTCA+TGG | + | chr5.2:25123776-25123795 | None:intergenic | 35.0% |
| ! | GTACCTTGAAGGTATGTATT+TGG | + | chr5.2:25126462-25126481 | None:intergenic | 35.0% |
| ! | TCCCTTTGTTATCTCAAACA+TGG | - | chr5.2:25125005-25125024 | MS.gene43890:intron | 35.0% |
| !! | AAATGATGTTGATGATACCC+TGG | + | chr5.2:25125825-25125844 | None:intergenic | 35.0% |
| !! | AGAGAAGGTGTTGTTCAATT+AGG | - | chr5.2:25124958-25124977 | MS.gene43890:intron | 35.0% |
| !!! | ATTTTATGGAGCAGGTTGAT+TGG | - | chr5.2:25124520-25124539 | MS.gene43890:intron | 35.0% |
| AAAAGTCGCGAAAGAAGAGT+TGG | - | chr5.2:25125734-25125753 | MS.gene43890:CDS | 40.0% | |
| AACACAACAACAACGAGCAT+TGG | - | chr5.2:25125692-25125711 | MS.gene43890:intron | 40.0% | |
| AATATAGGTGGGAAGGACAA+GGG | - | chr5.2:25124040-25124059 | MS.gene43890:intron | 40.0% | |
| AATTGATCACCTTGATGCTG+TGG | + | chr5.2:25125531-25125550 | None:intergenic | 40.0% | |
| ACCTTCTCTAACAGCAATGA+GGG | + | chr5.2:25124947-25124966 | None:intergenic | 40.0% | |
| AGAAGAGACTCTACTAAAGG+TGG | + | chr5.2:25126361-25126380 | None:intergenic | 40.0% | |
| AGAAGATGAGTAACAGCCAA+TGG | + | chr5.2:25123726-25123745 | None:intergenic | 40.0% | |
| AGACCTGAACAACTTGATGT+TGG | - | chr5.2:25125780-25125799 | MS.gene43890:CDS | 40.0% | |
| AGAGTAGTAGTTCCATACCA+GGG | - | chr5.2:25125805-25125824 | MS.gene43890:intron | 40.0% | |
| CAAGAGGAAACAGAAGGAAT+TGG | - | chr5.2:25124076-25124095 | MS.gene43890:intron | 40.0% | |
| CCTAGCTCATCATCAGTTTA+TGG | - | chr5.2:25124306-25124325 | MS.gene43890:intron | 40.0% | |
| CTATGATCTTCTTACTTGGG+TGG | + | chr5.2:25123837-25123856 | None:intergenic | 40.0% | |
| GAACAATGGCACAACTTTCA+AGG | - | chr5.2:25125495-25125514 | MS.gene43890:intron | 40.0% | |
| GAGAGAAGAGACTCTACTAA+AGG | + | chr5.2:25126364-25126383 | None:intergenic | 40.0% | |
| GATTGAAGACTTGAGCTATG+TGG | - | chr5.2:25125377-25125396 | MS.gene43890:CDS | 40.0% | |
| GCATCCATGAAAATTCTCAG+TGG | - | chr5.2:25123769-25123788 | MS.gene43890:intron | 40.0% | |
| GCTTCAAGACTACTCATTGA+TGG | + | chr5.2:25125597-25125616 | None:intergenic | 40.0% | |
| GGAAGAACATCTTACTCCAT+TGG | - | chr5.2:25123707-25123726 | MS.gene43890:intron | 40.0% | |
| TAATATAGGTGGGAAGGACA+AGG | - | chr5.2:25124039-25124058 | MS.gene43890:intron | 40.0% | |
| TCAATTAGGAGCTGTTCACA+AGG | - | chr5.2:25124972-25124991 | MS.gene43890:intron | 40.0% | |
| TCATCATCAGCATACCCTTA+TGG | - | chr5.2:25125462-25125481 | MS.gene43890:intron | 40.0% | |
| ! | AAGGGTATGCTGATGATGAT+GGG | + | chr5.2:25125461-25125480 | None:intergenic | 40.0% |
| ! | AAGTTGTGCCATTGTTCTGA+TGG | + | chr5.2:25125492-25125511 | None:intergenic | 40.0% |
| ! | AGCTACATTGAAAGCATACC+AGG | - | chr5.2:25125420-25125439 | MS.gene43890:intron | 40.0% |
| ! | CCATAAACTGATGATGAGCT+AGG | + | chr5.2:25124309-25124328 | None:intergenic | 40.0% |
| ! | GATTTCTTTTACAGCACCCT+AGG | - | chr5.2:25124760-25124779 | MS.gene43890:CDS | 40.0% |
| ! | TAAGGGTATGCTGATGATGA+TGG | + | chr5.2:25125462-25125481 | None:intergenic | 40.0% |
| ! | TCACCAACATCAAGTTGTTC+AGG | + | chr5.2:25125786-25125805 | None:intergenic | 40.0% |
| ! | TTATTTGAGATTCTGGGTGG+CGG | - | chr5.2:25126335-25126354 | MS.gene43890:intron | 40.0% |
| !! | AAAGTTCAGGTTGAAGACCT+TGG | + | chr5.2:25124356-25124375 | None:intergenic | 40.0% |
| !! | AGGATATTGGTTTGGGAAGA+TGG | - | chr5.2:25124231-25124250 | MS.gene43890:intron | 40.0% |
| !! | ATGTTGATGATACCCTGGTA+TGG | + | chr5.2:25125820-25125839 | None:intergenic | 40.0% |
| !! | CAACGAGCATTGGAATTTAC+AGG | - | chr5.2:25125702-25125721 | MS.gene43890:intron | 40.0% |
| !! | CATGCACAGGATATTGGTTT+GGG | - | chr5.2:25124224-25124243 | MS.gene43890:intron | 40.0% |
| !!! | AGTGGGTTTATGCTGTTTTC+TGG | - | chr5.2:25123787-25123806 | MS.gene43890:intron | 40.0% |
| AACCGCAACCATGTTGCAAT+CGG | - | chr5.2:25125212-25125231 | MS.gene43890:intron | 45.0% | |
| ATATAGGTGGGAAGGACAAG+GGG | - | chr5.2:25124041-25124060 | MS.gene43890:intron | 45.0% | |
| ATGGTGGTCCATCAGAACAA+TGG | - | chr5.2:25125481-25125500 | MS.gene43890:intron | 45.0% | |
| ATGTCTCTCCGATTGCAACA+TGG | + | chr5.2:25125223-25125242 | None:intergenic | 45.0% | |
| CACCTTCTCTAACAGCAATG+AGG | + | chr5.2:25124948-25124967 | None:intergenic | 45.0% | |
| CTGCAGATCATAGTCACAAG+TGG | - | chr5.2:25124551-25124570 | MS.gene43890:intron | 45.0% | |
| GAGAGTAGTAGTTCCATACC+AGG | - | chr5.2:25125804-25125823 | MS.gene43890:intron | 45.0% | |
| GATCTTCTTACTTGGGTGGA+GGG | + | chr5.2:25123833-25123852 | None:intergenic | 45.0% | |
| GCAGCACCTGAAATAAACAC+TGG | - | chr5.2:25124276-25124295 | MS.gene43890:intron | 45.0% | |
| GGGGCATATGATAGATCAAG+AGG | - | chr5.2:25124060-25124079 | MS.gene43890:intron | 45.0% | |
| TCATCAGCATACCCTTATGG+TGG | - | chr5.2:25125465-25125484 | MS.gene43890:intron | 45.0% | |
| TCATGGATCAGTCGCATTCT+CGG | - | chr5.2:25125257-25125276 | MS.gene43890:intron | 45.0% | |
| TGAGCGAAACTACGAACGTT+TGG | + | chr5.2:25126405-25126424 | None:intergenic | 45.0% | |
| TGATCTTCTTACTTGGGTGG+AGG | + | chr5.2:25123834-25123853 | None:intergenic | 45.0% | |
| TTGCATCCTTAAACAGCAGC+AGG | + | chr5.2:25126197-25126216 | None:intergenic | 45.0% | |
| TTTACAGCACCCTAGGACTT+GGG | - | chr5.2:25124767-25124786 | MS.gene43890:CDS | 45.0% | |
| ! | GCATGCACAGGATATTGGTT+TGG | - | chr5.2:25124223-25124242 | MS.gene43890:intron | 45.0% |
| ! | GTTCTGATGGACCACCATAA+GGG | + | chr5.2:25125479-25125498 | None:intergenic | 45.0% |
| ! | TGTTCTGATGGACCACCATA+AGG | + | chr5.2:25125480-25125499 | None:intergenic | 45.0% |
| ! | TGTTGTGGTGGAACAACTGA+AGG | + | chr5.2:25125636-25125655 | None:intergenic | 45.0% |
| ! | TTTTACAGCACCCTAGGACT+TGG | - | chr5.2:25124766-25124785 | MS.gene43890:CDS | 45.0% |
| !! | TATGCTGATGATGATGGGTG+TGG | + | chr5.2:25125456-25125475 | None:intergenic | 45.0% |
| !! | TCAGGTTGAAGACCTTGGTA+AGG | + | chr5.2:25124351-25124370 | None:intergenic | 45.0% |
| !!! | GGGTTTATGCTGTTTTCTGG+AGG | - | chr5.2:25123790-25123809 | MS.gene43890:intron | 45.0% |
| AACTGAGCTTCCCAAGTCCT+AGG | + | chr5.2:25124780-25124799 | None:intergenic | 50.0% | |
| ACTGAGCTTCCCAAGTCCTA+GGG | + | chr5.2:25124779-25124798 | None:intergenic | 50.0% | |
| AGCATTGCACCACAGCATCA+AGG | - | chr5.2:25125519-25125538 | MS.gene43890:intron | 50.0% | |
| CTCCGATTGCAACATGGTTG+CGG | + | chr5.2:25125217-25125236 | None:intergenic | 50.0% | |
| TGGGAAGCTCAGTTCTTGTC+TGG | - | chr5.2:25124786-25124805 | MS.gene43890:CDS | 50.0% | |
| TTGGGTGGAGGGTAGTTTCT+AGG | + | chr5.2:25123822-25123841 | None:intergenic | 50.0% | |
| ! | CTAGCTCCTGCTGCTGTTTA+AGG | - | chr5.2:25126188-25126207 | MS.gene43890:intron | 50.0% |
| ! | GCCCTCATTGCTGTTAGAGA+AGG | - | chr5.2:25124943-25124962 | MS.gene43890:CDS | 50.0% |
| ACAGCAGCAGGAGCTAGCAT+TGG | + | chr5.2:25126185-25126204 | None:intergenic | 55.0% | |
| GGGTGTGGAAGTAGCACTCC+TGG | + | chr5.2:25125441-25125460 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 25123705 | 25126642 | 25123705 | ID=MS.gene43890 |
| chr5.2 | mRNA | 25123705 | 25126642 | 25123705 | ID=MS.gene43890.t1;Parent=MS.gene43890 |
| chr5.2 | exon | 25126506 | 25126642 | 25126506 | ID=MS.gene43890.t1.exon1;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25126506 | 25126642 | 25126506 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25126250 | 25126300 | 25126250 | ID=MS.gene43890.t1.exon2;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25126250 | 25126300 | 25126250 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25125932 | 25126114 | 25125932 | ID=MS.gene43890.t1.exon3;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25125932 | 25126114 | 25125932 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25125708 | 25125813 | 25125708 | ID=MS.gene43890.t1.exon4;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25125708 | 25125813 | 25125708 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25125532 | 25125573 | 25125532 | ID=MS.gene43890.t1.exon5;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25125532 | 25125573 | 25125532 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25125354 | 25125410 | 25125354 | ID=MS.gene43890.t1.exon6;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25125354 | 25125410 | 25125354 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25124574 | 25124972 | 25124574 | ID=MS.gene43890.t1.exon7;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25124574 | 25124972 | 25124574 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| chr5.2 | exon | 25123705 | 25123725 | 25123705 | ID=MS.gene43890.t1.exon8;Parent=MS.gene43890.t1 |
| chr5.2 | CDS | 25123705 | 25123725 | 25123705 | ID=cds.MS.gene43890.t1;Parent=MS.gene43890.t1 |
| Gene Sequence |
| Protein sequence |
