AlfalfaGEDB | MS.gene060137

M. sativa cultivar XinJiangDaYe / MS.gene060137

KEGG: K10580
GO: -
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060137.t1	NP_001241639.1	100	153	0	0	1	153	1	153	3.40E-81	310.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060137.t1	Q94A97	99.3	153	1	0	1	153	1	153	1.8e-83	309.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060137.t1	A0A251T2Q2	100.0	153	0	0	1	153	1	153	2.5e-81	310.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene060137	-0.810686	1.02E-50	-1.69E-46
MS.gene049297	MS.gene060137	-0.826633	2.44E-54	-1.69E-46
MS.gene049404	MS.gene060137	-0.800615	1.33E-48	-1.69E-46
MS.gene049435	MS.gene060137	-0.833574	4.93E-56	-1.69E-46
MS.gene049501	MS.gene060137	-0.81182	5.78E-51	-1.69E-46
MS.gene050020	MS.gene060137	-0.828906	6.93E-55	-1.69E-46
MS.gene050226	MS.gene060137	-0.819413	1.18E-52	-1.69E-46
MS.gene050227	MS.gene060137	-0.831878	1.30E-55	-1.69E-46
MS.gene050228	MS.gene060137	-0.831218	1.89E-55	-1.69E-46
MS.gene050330	MS.gene060137	0.822633	2.13E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene052308	MS.gene060137	PPI
MS.gene060137	MS.gene024700	PPI
MS.gene060137	MS.gene053417	PPI
MS.gene060137	MS.gene26246	PPI
MS.gene060137	MS.gene08926	PPI
MS.gene060137	MS.gene056800	PPI
MS.gene060137	MS.gene014659	PPI
MS.gene060137	MS.gene05127	PPI
MS.gene060137	MS.gene53889	PPI
MS.gene060137	MS.gene031830	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060137.t1	MTR_2g078010	98.693	153	2	0	1	153	1	153	7.31e-111	311
MS.gene060137.t1	MTR_2g078010	90.419	167	2	1	1	153	1	167	7.88e-107	301
MS.gene060137.t1	MTR_2g078010	97.887	142	3	0	1	142	1	142	2.05e-101	287
MS.gene060137.t1	MTR_2g078010	98.148	108	2	0	1	108	1	108	1.12e-75	221
MS.gene060137.t1	MTR_5g075580	49.655	145	73	0	8	152	4	148	3.47e-48	152
MS.gene060137.t1	MTR_8g071040	49.655	145	73	0	8	152	4	148	5.92e-48	152
MS.gene060137.t1	MTR_3g062450	48.966	145	74	0	8	152	4	148	1.50e-47	151
MS.gene060137.t1	MTR_7g116940	48.966	145	74	0	8	152	4	148	2.17e-47	150
MS.gene060137.t1	MTR_1g021150	48.252	143	74	0	8	150	4	146	1.22e-46	149
MS.gene060137.t1	MTR_4g073240	47.586	145	76	0	8	152	4	148	2.48e-46	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060137.t1	AT1G78870	99.346	153	1	0	1	153	1	153	1.44e-111	313
MS.gene060137.t1	AT1G16890	99.346	153	1	0	1	153	1	153	2.24e-111	313
MS.gene060137.t1	AT1G16890	93.210	162	2	1	1	153	1	162	9.53e-108	304
MS.gene060137.t1	AT1G16890	100.000	120	0	0	34	153	1	120	3.03e-87	250
MS.gene060137.t1	AT1G78870	99.167	120	1	0	34	153	1	120	1.21e-86	249
MS.gene060137.t1	AT1G78870	98.347	121	1	1	34	153	1	121	7.98e-85	244
MS.gene060137.t1	AT1G78870	100.000	108	0	0	1	108	1	108	4.46e-77	224
MS.gene060137.t1	AT3G08690	49.655	145	73	0	8	152	4	148	2.03e-48	153
MS.gene060137.t1	AT3G08690	49.655	145	73	0	8	152	4	148	2.03e-48	153
MS.gene060137.t1	AT5G41700	49.655	145	73	0	8	152	4	148	2.22e-48	153

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Find 41 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTACAGTGCGAATCTGA+AGG	0.534958	2.3:+19771612	None:intergenic
AAGCATACCTTGTCAATGTT+AGG	0.438243	2.3:+19771753	None:intergenic
AAGGAGACTGAGTTGGGCCA+AGG	0.563036	2.3:+19774616	None:intergenic
AAGTACAGTGCGAATCTGAA+GGG	0.628795	2.3:+19771613	None:intergenic
ACAGTGCGAATCTGAAGGGC+GGG	0.582860	2.3:+19771617	None:intergenic
ACCAAATTGTCAAGCACCGC+TGG	0.462398	2.3:+19770855	None:intergenic
ACCGCATATTGTCTTCCGAA+GGG	0.591021	2.3:+19774655	None:intergenic
AGCACCGCTGGCATATAATC+TGG	0.476499	2.3:+19770867	None:intergenic
AGTACCTTTGGAGCAGCCAT+TGG	0.489227	2.3:+19773312	None:intergenic
ATATAATCTGGTCCACTCTT+TGG	0.343468	2.3:+19770879	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGTAGTTAACTCAAG+TGG	-	chr2.3:19775210-19775229	MS.gene060137:intron	30.0%
AAAATTAACCAGCTGTGTAT+TGG	-	chr2.3:19775515-19775534	MS.gene060137:intron	30.0%
AAACGATTTGATTAATGAGG+TGG	-	chr2.3:19772388-19772407	MS.gene060137:intron	30.0%
AAAGAAGAAAAGAAAGGCAA+GGG	+	chr2.3:19774953-19774972	None:intergenic	30.0%
AACACAAAATACGCATTTCA+AGG	+	chr2.3:19772117-19772136	None:intergenic	30.0%
AACATAAATCATACACACCA+AGG	+	chr2.3:19771710-19771729	None:intergenic	30.0%
AACGATTTGATTAATGAGGT+GGG	-	chr2.3:19772389-19772408	MS.gene060137:intron	30.0%
AACTTCATGAAAAGGAAAAG+TGG	+	chr2.3:19772961-19772980	None:intergenic	30.0%
AATAATGCTCAATTTCTACG+TGG	-	chr2.3:19774549-19774568	MS.gene060137:intron	30.0%
AGAAGAGCTAATAAGTTACT+GGG	-	chr2.3:19772760-19772779	MS.gene060137:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	19770864	19775828	19770864	ID=MS.gene060137
chr2.3	mRNA	19770864	19775828	19770864	ID=MS.gene060137.t1;Parent=MS.gene060137
chr2.3	exon	19775793	19775828	19775793	ID=MS.gene060137.t1.exon1;Parent=MS.gene060137.t1
chr2.3	CDS	19775793	19775828	19775793	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19775343	19775370	19775343	ID=MS.gene060137.t1.exon2;Parent=MS.gene060137.t1
chr2.3	CDS	19775343	19775370	19775343	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19774610	19774696	19774610	ID=MS.gene060137.t1.exon3;Parent=MS.gene060137.t1
chr2.3	CDS	19774610	19774696	19774610	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19773317	19773375	19773317	ID=MS.gene060137.t1.exon4;Parent=MS.gene060137.t1
chr2.3	CDS	19773317	19773375	19773317	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19771761	19771802	19771761	ID=MS.gene060137.t1.exon5;Parent=MS.gene060137.t1
chr2.3	CDS	19771761	19771802	19771761	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19771608	19771681	19771608	ID=MS.gene060137.t1.exon6;Parent=MS.gene060137.t1
chr2.3	CDS	19771608	19771681	19771608	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19771008	19771105	19771008	ID=MS.gene060137.t1.exon7;Parent=MS.gene060137.t1
chr2.3	CDS	19771008	19771105	19771008	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1
chr2.3	exon	19770864	19770901	19770864	ID=MS.gene060137.t1.exon8;Parent=MS.gene060137.t1
chr2.3	CDS	19770864	19770901	19770864	ID=cds.MS.gene060137.t1;Parent=MS.gene060137.t1

Gene Sequence

>MS.gene060137

ATGGCTAACAGTAACCTTCCTCGAAGAATCATCAAGGTTCGTTCGTTTCAATTTTCTTCTTAAGATCCCTATTTCAATTTCTCTGATCGATTCGTTTTTTCGATTTCTAAACCTAATTACTCTAAATCTTGTGTTTATTGTGTAACTTTTTCTTTCGATTATTGATTATCACGTTGATTATTAGCTTGATTGAACGTAAAATTACATGTGAAATTAGGGTAGATTGATTTTTTTTCAGTGGAACTAGCTTAATTAATTAGTTTAATTTCAGTGATGATTACAAAATTAGGAAAATTAAAGTGTTAGATGTTGAATCGGTGATTCAACTTTTTTTTTTCTTTTTCTGATTTGATCTTTGTTGATGTTGAATTTTAGTTTTGAATTGTTTTTATTGGTTCTGTATTTGAATTTGATTTTTGTGGATGTTTTGATAACTAGTGTTTCTTTGATCTCTTCAGGAAACACAGCGTTTGCTCAGTGAGCCAGGTATTGTCTTATTCTCATCCTTCTGTAGTGTAGAAGGTTTCACTCGGTTAATTGGAAAGTGTTTGTTGTGTGGTTTGTATTTTTTGTGGTTTTTGTTTTAGTATAGTCTTTTGCAAGATACGTTATGGCGTAATTTGATTCGTGTGCGATAATTCTTGGTTGTTTTTTTTATTTTCTAAGATACCTTGAATTTTACCCTATGAAGCACAGACACGAAGACGCAGACACCGATAACAATTAGAGAAAATGACACCCTTTATTGTAATCATATCATATGTGTTGGTTCGTATCAGAACGATAGGTTTCCGACACCGGGACACGCTTAATCCGAGGGGTATTTGTGCTTCTTAGATTTTACCTTGGTGTGTATGATTTATGTTAAATCAGTGTTGTTAAATAGCTGCGCTATAGAATATCACAGTGGAAATTGAATAAATCCCTATTTTCGTGTTATATGGTAGTTACGAAAAAATGTTGTCAAATAGTGGCTACAGCGCCGCTATTCCATTGCTGCATAGTGGAATTTCCTGCGATCCGCATTGAACAAACCGTTATTTACCGTGATCTGCAGTTGACAGCACTGTGCTAAATGTTTCCTTGTTTTGTTTTGCTGTGTTGATTTATAATATTTGATCTGATGATGCAGCGCCTGGAATTAGTGCATCCCCTTCGGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGCCCAACTCAGTCTCCTTATGAAGGTAGTGATGACCCTAACAACTTGGTTTTACACCTTGAAATGCGTATTTTGTGTTTATCTTTGATAGAAATGGGATATTAATTATTTTGGGGCTTTTGAGCAAGTGTATTATTGTTTTCTATAAAAGATTTTTGTCTATTATGCAGACTTGTTTTGGGAATGATTCTGAAAGGAAACTGCTTTTATTTGTTGCCATGATATTTCTAATTCACTGCTTTTTTATCTCAAGTTGAACATAAACTGTTCGACTCTACAAACAGTCTATTAGTTATATGAAATGTTATCCTGTTAATAATTTTGCGAGGCAAACGATTTGATTAATGAGGTGGGCATAAGAATATTTGAATCTCATCATTATAGTCGTTAATGATTAAAGAATATCTGCTTGTCTGCTTCTCACAGATGTCCTGTCTTCTTATCATGTGTTTAACTTTAACCCCTGTATACATCTTCTTGAACTATTTTCTTTGAAGTTCGTTATCTTGGTCCACATTGTTAGCCCTTATATGCATCTGAACCTAGGCGTTATATATTTTTACCATATGTACATGTCACAGTCGTGTCCCATGTGTGTATACTTCTATGATCATTTCTAGTGGATTATTTGATGAGCTTATTTCTCGTATGTAACTCTTTTGGTGCACCAAAAAGACTGGGTCAAACACTAGAATTTAGAATAGAAGAGCTAATAAGTTACTGGGTCGAATAAATGGATATTTACATACTCTAATCTTTGTTATTGTGGGTCATCTATTATACTCATTTTCGCATCATATTTGAAAGTCATAATGTATTATAGATTTGTATGGAAATTGATGCATGAGTTATGGCACTTGGTTGGAGTGGGATAAACAAGACAAGATTATACTCGCATCACCACTTTTCCTTTTCATGAAGTTGATGTATTATAAATTTTGACTTTCTGAAGGGTTTATCACCGAGTGTAGAGTGCACCCTGCAGTTCAAATATAATGTATTGTGTGTCTCATTTTAACTTGGGTGAGACTTGGAAATACATTTGTATGGAAAGGAACTATGTGTTGTCTGTGAACACTACGTGTGTGTCTCATGTTTGTATGCTTCTCTGATCATATTTTAGGGTTTGGAAAGGAATAGATTACTGAATAACAACTAGCTTGACTATACTGGAATTTTTTTATTCTCTCCTACCTCTCCTCATAAAAGAAAGAAATCTCAAGTTTACTGATGTGCAAGTGTTTTGTTTCCATTACTAGGGGGAGTTTTCAAGCTAGAACTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTACTTAATTTAATTGTTGTCATTTTATTTTCATCTGTGTTGTGATATTATTTTGGTGTTAACTGTTAAGTTTCTACTGTGTTCCTGTCTACCAAGAAGAAATGACAACATAATTATAAATTATTTTCACCTGTAAACTTTTTTAAGTTTTAGAAAAAGGTTGTTCCTCTTTATTTGTCGTTTTCAAAGTTCAATGCAACATCAATTATTGTTTTGTCAATAATACCCTTAACTATTCACTGCAGAGGGAGAAATAGGTGGAATAAGTCAATAAATAGTTAAGGGTATCATAGAAAAGGACAAATAATTCCGTCATAAGTAACAATTTACTGGTCCTCTTGGCATGTGTAAATAACCTTAAAATGACGGCTAAATAGAAACAGATATATTTTTCATGTCTTTGTATCTGATGATCGATGTCAAACTTATAAAGGCCATGGGACGAGATATTCTGTAAATTTGAAATTAATTGCACAGATGCACAGTCTTGTGTACACACTCACCTTGCCCTTCATATCTCCCCCTTTGAAACTGATGCAGCGAGAAATGGTAAACATATTTAATTAACTGTCTTAACATAGTTTTCAAAATTTTAAGATGATGAATAATTTGAGATAAGTTGATGTATTAAAATTGTGTGTGAAAATTCAATCAGCTAGCTTTTTACTTATAAGCTTTCAGCTAAAAAAATAGCTTCTCCGGTTAGGAACCCAAGAATTCTAATCTTCAAGATTAGAGAAACGGGTAAAACAAACTCAAATAGATAAAGATAAAGATTGCACATGGCTGAAGAATTTCTTATTTGTGAAGTGAGATTGAAAGTGAAGATACAACAGGTATACAATGATGATGATAACCTTACACACCAAAGGAACACTCATTTCATACCAGATAATTCTCTAGTCACAATTTAAGTATTAAAGCTATCTTTCCCCTCTGCCGATTGATGGCTATTTAAAGACTTCTATGATTAACCAAAATAGCAACTCTTAACAACCACCTAACAAACTTACCAAATTACAAACTTGTACTAACTAACTCTTAACTACTCTAATCATCTAATATTCTATATTCGAACATTGCCATTTGTTAGATTGTCCAAATAGAGTCACAGTATGTGTTTCTTTTAAAATGAAAATTGAAAGATTTTCTTGATAAATTGGGATGGAATATAATAATGCTCAATTTCTACGTGGTCTGGGATAATGTTGTGTATATTGAAGCCATTACTACTTCCAGGGTTTAGGAAACGACAGTCACAGCTATTGTGTATCTGATAGGGGTTTACATTTACGAAAGAGGTCTAGTAGGAGGTTCTTTTTATTTTATTTTTTAAGGATAATTTAATCATGCCTCCCTCAGAATTGTGGATTGTTTATTATTTTTTTCTTTCTTTTCTGGCTTTGATTCTTGTGATGATAAAATATGATATGATAGATTTGGAGTGTGCATTTTTTCTAAAAAATTCTGTAATAATTCTTATTCCTAATTCAATCATGCCTTGCTTCTTCCAGGTCAGGTTCTTGACAAAAATATATCATCCTAACATTGACAAGGTATGCTTTGCTTTGCTTCCCTTGCCTTTCTTTTCTTCTTTGATGATAAGCTTTTATAAAAGTTGGAAATTCGATGCAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCCGCCCTTCAGATTCGCACTGTACTTTTGAGGTATATTTAATTTTCACCTTTTACTCTAGTGGATTAACTTTTTGCTGGACCAATTCATTTCCTGAAAAACTGTAGTTAATAGATCATATGTGAAATAATTTTTTTATGTATCTTAAATCATTTTTAAAACTGTAGTTAACTCAAGTGGATTTGCAAGCCTCCAAATTGAACTTTTTTTAAATAAATGTTGTATGTATCTTAAATCATTTTGTTGAAAGAATTTTTCATGTTGGTAAAGTTTTATGGGAAAACAGATGGTTAAATTAACTTGTCAAATAGACATTTTTTAAACCATAAATTATCTGGTTGAATGCATAATTGATTGTGGTGACTTACTCAATTTGTATGCGAAGGTTCAGCCGGATCTTACTTTTGATTTCTGAGTTACTCTTGCATATACGTAACATTGTGGAAAGTCGGTTAAAAATGAAAAATTAACCAGCTGTGTATTGGATATAATGTTTTATTGATAATAATGTAAATTTTGTGGGTCCTATTTTAGTATTCAAGCTCTTTTGAGTGCACCAAACCCAGATGATCCTCTTTCTGAGAACATTGCTAAGCATTGGAAATCTAACGAGGCTGAGGCTGTTGAGACAGGTATGATCTCTTCTGCTAGCATGATTACATCAAAGTTTTTTATTTTTTAATGATAGCATCAGACGTGCTATGTGTATATAATGGTGGTTATTTTTTAAATCTGCAGCCAAAGAGTGGACCAGATTATATGCCAGCGGTGCTTGA

Protein sequence

>MS.gene060137.t1

MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA