Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44031.t1 | QCE07404.1 | 74.2 | 558 | 141 | 2 | 1 | 556 | 55 | 611 | 2.10E-229 | 805.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44031.t1 | Q43317 | 71.8 | 294 | 83 | 0 | 264 | 557 | 31 | 324 | 1.6e-116 | 421.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44031.t1 | A0A4D6N3F9 | 74.2 | 558 | 141 | 2 | 1 | 556 | 55 | 611 | 1.5e-229 | 805.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058736 | MS.gene44031 | 0.822383 | 2.44E-53 | -1.69E-46 |
MS.gene058738 | MS.gene44031 | 0.810027 | 1.41E-50 | -1.69E-46 |
MS.gene058739 | MS.gene44031 | 0.892855 | 1.08E-74 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44031.t1 | MTR_1g081625 | 92.177 | 294 | 23 | 0 | 264 | 557 | 30 | 323 | 1.79e-178 | 506 |
MS.gene44031.t1 | MTR_1g081625 | 89.583 | 240 | 25 | 0 | 1 | 240 | 55 | 294 | 3.29e-138 | 404 |
MS.gene44031.t1 | MTR_1g081620 | 82.993 | 294 | 50 | 0 | 264 | 557 | 30 | 323 | 4.96e-163 | 467 |
MS.gene44031.t1 | MTR_1g081620 | 96.250 | 240 | 9 | 0 | 1 | 240 | 55 | 294 | 5.85e-150 | 433 |
MS.gene44031.t1 | MTR_1g081610 | 72.449 | 294 | 81 | 0 | 264 | 557 | 31 | 324 | 4.16e-132 | 388 |
MS.gene44031.t1 | MTR_1g081610 | 76.667 | 240 | 56 | 0 | 1 | 240 | 56 | 295 | 1.61e-109 | 330 |
MS.gene44031.t1 | MTR_5g006340 | 71.088 | 294 | 85 | 0 | 264 | 557 | 31 | 324 | 7.31e-130 | 382 |
MS.gene44031.t1 | MTR_5g006340 | 75.000 | 240 | 60 | 0 | 1 | 240 | 56 | 295 | 8.42e-108 | 326 |
MS.gene44031.t1 | MTR_1g103690 | 70.979 | 286 | 83 | 0 | 272 | 557 | 39 | 324 | 1.16e-126 | 374 |
MS.gene44031.t1 | MTR_1g103690 | 74.167 | 240 | 62 | 0 | 1 | 240 | 56 | 295 | 3.61e-106 | 322 |
MS.gene44031.t1 | MTR_4g087490 | 62.544 | 283 | 106 | 0 | 272 | 554 | 78 | 360 | 8.21e-126 | 373 |
MS.gene44031.t1 | MTR_4g087490 | 64.167 | 240 | 86 | 0 | 1 | 240 | 95 | 334 | 1.04e-108 | 330 |
MS.gene44031.t1 | MTR_1g081640 | 72.954 | 281 | 75 | 1 | 264 | 543 | 30 | 310 | 1.22e-125 | 371 |
MS.gene44031.t1 | MTR_1g081640 | 85.652 | 230 | 33 | 0 | 1 | 230 | 55 | 284 | 3.65e-125 | 370 |
MS.gene44031.t1 | MTR_4g087510 | 59.364 | 283 | 107 | 1 | 272 | 554 | 77 | 351 | 1.19e-117 | 352 |
MS.gene44031.t1 | MTR_4g087510 | 62.083 | 240 | 83 | 1 | 1 | 240 | 94 | 325 | 2.86e-102 | 313 |
MS.gene44031.t1 | MTR_7g078070 | 57.388 | 291 | 124 | 0 | 264 | 554 | 24 | 314 | 4.70e-114 | 342 |
MS.gene44031.t1 | MTR_7g078070 | 63.071 | 241 | 89 | 0 | 1 | 241 | 49 | 289 | 2.17e-101 | 309 |
MS.gene44031.t1 | MTR_7g078070 | 60.886 | 271 | 106 | 0 | 284 | 554 | 11 | 281 | 5.37e-114 | 340 |
MS.gene44031.t1 | MTR_7g078070 | 63.071 | 241 | 89 | 0 | 1 | 241 | 16 | 256 | 6.48e-102 | 309 |
MS.gene44031.t1 | MTR_7g078070 | 57.388 | 291 | 124 | 0 | 264 | 554 | 84 | 374 | 6.77e-114 | 343 |
MS.gene44031.t1 | MTR_7g078070 | 63.071 | 241 | 89 | 0 | 1 | 241 | 109 | 349 | 2.45e-101 | 311 |
MS.gene44031.t1 | MTR_4g087520 | 66.917 | 266 | 88 | 0 | 289 | 554 | 1 | 266 | 5.35e-112 | 334 |
MS.gene44031.t1 | MTR_4g087520 | 66.946 | 239 | 79 | 0 | 1 | 239 | 1 | 239 | 1.20e-98 | 300 |
MS.gene44031.t1 | MTR_7g087110 | 59.041 | 271 | 101 | 1 | 284 | 554 | 108 | 368 | 2.17e-94 | 293 |
MS.gene44031.t1 | MTR_7g087110 | 59.833 | 239 | 86 | 1 | 1 | 239 | 113 | 341 | 3.91e-82 | 261 |
MS.gene44031.t1 | MTR_5g095670 | 29.560 | 318 | 161 | 7 | 284 | 542 | 87 | 400 | 1.69e-31 | 127 |
MS.gene44031.t1 | MTR_5g095670 | 29.617 | 287 | 144 | 4 | 1 | 230 | 92 | 377 | 4.83e-30 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44031.t1 | AT2G43750 | 69.416 | 291 | 89 | 0 | 264 | 554 | 98 | 388 | 3.72e-126 | 375 |
MS.gene44031.t1 | AT2G43750 | 73.222 | 239 | 64 | 0 | 1 | 239 | 123 | 361 | 4.21e-107 | 327 |
MS.gene44031.t1 | AT2G43750 | 69.416 | 291 | 89 | 0 | 264 | 554 | 98 | 388 | 3.72e-126 | 375 |
MS.gene44031.t1 | AT2G43750 | 73.222 | 239 | 64 | 0 | 1 | 239 | 123 | 361 | 4.21e-107 | 327 |
MS.gene44031.t1 | AT4G14880 | 66.667 | 294 | 98 | 0 | 264 | 557 | 28 | 321 | 9.66e-125 | 369 |
MS.gene44031.t1 | AT4G14880 | 70.954 | 241 | 70 | 0 | 1 | 241 | 53 | 293 | 9.26e-107 | 323 |
MS.gene44031.t1 | AT4G14880 | 66.667 | 294 | 98 | 0 | 264 | 557 | 28 | 321 | 9.66e-125 | 369 |
MS.gene44031.t1 | AT4G14880 | 70.954 | 241 | 70 | 0 | 1 | 241 | 53 | 293 | 9.26e-107 | 323 |
MS.gene44031.t1 | AT4G14880 | 66.667 | 294 | 98 | 0 | 264 | 557 | 28 | 321 | 9.66e-125 | 369 |
MS.gene44031.t1 | AT4G14880 | 70.954 | 241 | 70 | 0 | 1 | 241 | 53 | 293 | 9.26e-107 | 323 |
MS.gene44031.t1 | AT4G14880 | 66.667 | 294 | 98 | 0 | 264 | 557 | 28 | 321 | 9.66e-125 | 369 |
MS.gene44031.t1 | AT4G14880 | 70.954 | 241 | 70 | 0 | 1 | 241 | 53 | 293 | 9.26e-107 | 323 |
MS.gene44031.t1 | AT4G14880 | 66.667 | 294 | 98 | 0 | 264 | 557 | 28 | 321 | 9.66e-125 | 369 |
MS.gene44031.t1 | AT4G14880 | 70.954 | 241 | 70 | 0 | 1 | 241 | 53 | 293 | 9.26e-107 | 323 |
MS.gene44031.t1 | AT3G04940 | 65.979 | 291 | 99 | 0 | 264 | 554 | 31 | 321 | 3.72e-124 | 368 |
MS.gene44031.t1 | AT3G04940 | 71.250 | 240 | 69 | 0 | 1 | 240 | 56 | 295 | 1.05e-107 | 325 |
MS.gene44031.t1 | AT3G04940 | 65.979 | 291 | 99 | 0 | 264 | 554 | 31 | 321 | 3.72e-124 | 368 |
MS.gene44031.t1 | AT3G04940 | 71.250 | 240 | 69 | 0 | 1 | 240 | 56 | 295 | 1.05e-107 | 325 |
MS.gene44031.t1 | AT3G59760 | 67.354 | 291 | 95 | 0 | 264 | 554 | 136 | 426 | 6.27e-124 | 371 |
MS.gene44031.t1 | AT3G59760 | 71.130 | 239 | 69 | 0 | 1 | 239 | 161 | 399 | 1.51e-105 | 324 |
MS.gene44031.t1 | AT3G59760 | 67.354 | 291 | 95 | 0 | 264 | 554 | 136 | 426 | 7.45e-124 | 371 |
MS.gene44031.t1 | AT3G59760 | 71.130 | 239 | 69 | 0 | 1 | 239 | 161 | 399 | 1.75e-105 | 324 |
MS.gene44031.t1 | AT3G22460 | 66.914 | 269 | 69 | 1 | 289 | 557 | 1 | 249 | 1.18e-119 | 353 |
MS.gene44031.t1 | AT3G22460 | 67.220 | 241 | 59 | 1 | 1 | 241 | 1 | 221 | 1.49e-103 | 312 |
MS.gene44031.t1 | AT5G28020 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.02e-117 | 350 |
MS.gene44031.t1 | AT5G28020 | 68.333 | 240 | 76 | 0 | 1 | 240 | 55 | 294 | 1.72e-97 | 299 |
MS.gene44031.t1 | AT5G28020 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.02e-117 | 350 |
MS.gene44031.t1 | AT5G28020 | 68.333 | 240 | 76 | 0 | 1 | 240 | 55 | 294 | 1.72e-97 | 299 |
MS.gene44031.t1 | AT5G28020 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.02e-117 | 350 |
MS.gene44031.t1 | AT5G28020 | 68.333 | 240 | 76 | 0 | 1 | 240 | 55 | 294 | 1.72e-97 | 299 |
MS.gene44031.t1 | AT5G28020 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.02e-117 | 350 |
MS.gene44031.t1 | AT5G28020 | 68.333 | 240 | 76 | 0 | 1 | 240 | 55 | 294 | 1.72e-97 | 299 |
MS.gene44031.t1 | AT5G28020 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.02e-117 | 350 |
MS.gene44031.t1 | AT5G28020 | 68.333 | 240 | 76 | 0 | 1 | 240 | 55 | 294 | 1.72e-97 | 299 |
MS.gene44031.t1 | AT5G28030 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.13e-114 | 343 |
MS.gene44031.t1 | AT5G28030 | 69.583 | 240 | 73 | 0 | 1 | 240 | 55 | 294 | 2.60e-96 | 296 |
MS.gene44031.t1 | AT5G28030 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.13e-114 | 343 |
MS.gene44031.t1 | AT5G28030 | 69.583 | 240 | 73 | 0 | 1 | 240 | 55 | 294 | 2.60e-96 | 296 |
MS.gene44031.t1 | AT5G28030 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.13e-114 | 343 |
MS.gene44031.t1 | AT5G28030 | 69.583 | 240 | 73 | 0 | 1 | 240 | 55 | 294 | 2.60e-96 | 296 |
MS.gene44031.t1 | AT5G28030 | 65.646 | 294 | 101 | 0 | 264 | 557 | 30 | 323 | 2.13e-114 | 343 |
MS.gene44031.t1 | AT5G28030 | 69.583 | 240 | 73 | 0 | 1 | 240 | 55 | 294 | 2.60e-96 | 296 |
MS.gene44031.t1 | AT3G59760 | 65.934 | 273 | 93 | 0 | 264 | 536 | 136 | 408 | 3.84e-110 | 336 |
MS.gene44031.t1 | AT3G59760 | 71.130 | 239 | 69 | 0 | 1 | 239 | 161 | 399 | 1.10e-105 | 324 |
MS.gene44031.t1 | AT3G61440 | 59.058 | 276 | 113 | 0 | 279 | 554 | 87 | 362 | 4.69e-109 | 331 |
MS.gene44031.t1 | AT3G61440 | 61.826 | 241 | 92 | 0 | 1 | 241 | 97 | 337 | 5.91e-97 | 300 |
MS.gene44031.t1 | AT3G61440 | 60.150 | 266 | 106 | 0 | 289 | 554 | 1 | 266 | 2.97e-107 | 322 |
MS.gene44031.t1 | AT3G61440 | 61.826 | 241 | 92 | 0 | 1 | 241 | 1 | 241 | 1.05e-97 | 298 |
MS.gene44031.t1 | AT5G28020 | 67.511 | 237 | 77 | 0 | 321 | 557 | 1 | 237 | 3.86e-94 | 287 |
MS.gene44031.t1 | AT5G28020 | 66.827 | 208 | 69 | 0 | 33 | 240 | 1 | 208 | 2.30e-78 | 247 |
MS.gene44031.t1 | AT3G03630 | 58.974 | 273 | 102 | 1 | 284 | 556 | 142 | 404 | 1.12e-93 | 292 |
MS.gene44031.t1 | AT3G03630 | 61.506 | 239 | 82 | 1 | 1 | 239 | 147 | 375 | 9.58e-81 | 259 |
MS.gene44031.t1 | AT3G61440 | 59.167 | 240 | 98 | 0 | 315 | 554 | 2 | 241 | 1.22e-93 | 286 |
MS.gene44031.t1 | AT3G61440 | 60.465 | 215 | 85 | 0 | 27 | 241 | 2 | 216 | 9.46e-84 | 261 |
MS.gene44031.t1 | AT3G61440 | 57.080 | 226 | 97 | 0 | 279 | 504 | 87 | 312 | 2.28e-84 | 266 |
MS.gene44031.t1 | AT3G61440 | 59.722 | 216 | 87 | 0 | 1 | 216 | 97 | 312 | 9.07e-84 | 264 |
MS.gene44031.t1 | AT5G28030 | 63.801 | 221 | 80 | 0 | 264 | 484 | 30 | 250 | 2.29e-81 | 255 |
MS.gene44031.t1 | AT5G28030 | 68.367 | 196 | 62 | 0 | 1 | 196 | 55 | 250 | 6.51e-79 | 249 |
MS.gene44031.t1 | AT3G22460 | 65.190 | 158 | 55 | 0 | 264 | 421 | 31 | 188 | 1.06e-66 | 214 |
MS.gene44031.t1 | AT3G22460 | 73.684 | 133 | 35 | 0 | 1 | 133 | 56 | 188 | 2.54e-64 | 208 |
MS.gene44031.t1 | AT1G55880 | 27.760 | 317 | 169 | 6 | 284 | 542 | 83 | 397 | 1.06e-27 | 115 |
MS.gene44031.t1 | AT1G55880 | 28.125 | 288 | 148 | 6 | 1 | 230 | 88 | 374 | 4.86e-26 | 111 |
MS.gene44031.t1 | AT1G55880 | 30.769 | 208 | 102 | 3 | 284 | 450 | 83 | 289 | 1.20e-22 | 100 |
MS.gene44031.t1 | AT1G55880 | 32.020 | 203 | 96 | 5 | 1 | 162 | 88 | 289 | 3.57e-22 | 98.6 |
Find 149 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGCAGCTGCAATAAAATT+AGG | 0.184994 | 1.3:+57620082 | MS.gene44031:CDS |
CTCTCAAGACTCACATAAAA+TGG | 0.240479 | 1.3:-57623659 | None:intergenic |
AGAATTCTACTCAGAGCTTT+TGG | 0.254376 | 1.3:+57623683 | MS.gene44031:CDS |
TCTACTAGATGAAGTTATTC+AGG | 0.259370 | 1.3:+57619094 | MS.gene44031:CDS |
TGCCTTGAAAGAAGGTTTAC+TGG | 0.283658 | 1.3:+57619450 | MS.gene44031:CDS |
TGCCTTGAAAGAAGGTTTAC+TGG | 0.283658 | 1.3:+57624891 | MS.gene44031:CDS |
TTGGTTGCAGGGATAGGAAC+TGG | 0.301174 | 1.3:+57618068 | MS.gene44031:CDS |
AGACCACTGGCCCTGAGATT+TGG | 0.302016 | 1.3:+57623926 | MS.gene44031:CDS |
ATTTGACTAATTACCTTTCC+AGG | 0.303581 | 1.3:-57617249 | None:intergenic |
TCTTCTAGATGAAGTTATTC+AGG | 0.311475 | 1.3:+57624517 | MS.gene44031:CDS |
AGAGTTGATGCTTTGGTTGC+AGG | 0.314791 | 1.3:+57618056 | MS.gene44031:CDS |
AAAATTGATGCTTTGGTTGC+AGG | 0.319930 | 1.3:+57623964 | MS.gene44031:CDS |
AGACCACTGGCCCTGAGATT+TGG | 0.324065 | 1.3:+57618018 | MS.gene44031:CDS |
TGATTGAACATATAACTATT+AGG | 0.328742 | 1.3:-57623785 | None:intergenic |
GATCCTGCCAAAGGAATAAA+AGG | 0.331825 | 1.3:+57623725 | MS.gene44031:CDS |
AAATTAGTTACTACCTTTCC+CGG | 0.350573 | 1.3:-57622660 | None:intergenic |
GTCAGGGATCAACTTGAGTT+TGG | 0.351805 | 1.3:+57621065 | MS.gene44031:CDS |
TGGAGGGAGAGTTGATGCTT+TGG | 0.358657 | 1.3:+57618049 | MS.gene44031:CDS |
TGGTATCATTCCTCCTGTTC+TGG | 0.360071 | 1.3:+57624487 | MS.gene44031:CDS |
ACTATTCATACCTTGATCTC+TGG | 0.360280 | 1.3:-57618134 | None:intergenic |
AATATTCATACCTTAATCTC+TGG | 0.367964 | 1.3:-57624042 | None:intergenic |
TGGAGGGAAAATTGATGCTT+TGG | 0.373019 | 1.3:+57623957 | MS.gene44031:CDS |
CCAGAGTCTTTCCAAATCTC+AGG | 0.373679 | 1.3:-57618029 | None:intergenic |
CATCTAGTAGATCAACTTCC+AGG | 0.383555 | 1.3:-57619082 | None:intergenic |
AAAATTATACTGCGAGCTTT+CGG | 0.393798 | 1.3:+57617776 | MS.gene44031:CDS |
GACTTTCCTCCATTCAGAAC+TGG | 0.398595 | 1.3:-57624161 | None:intergenic |
AGGTGTTGGGAAGTTTCTTA+AGG | 0.398952 | 1.3:+57624011 | MS.gene44031:CDS |
CCAGAGTCTCTCCAAATCTC+AGG | 0.400543 | 1.3:-57623937 | None:intergenic |
TGATTGAGCATATAACTATT+AGG | 0.407097 | 1.3:-57617878 | None:intergenic |
TACCAGTAAACCTTCTTTCA+AGG | 0.409533 | 1.3:-57619452 | None:intergenic |
TACCAGTAAACCTTCTTTCA+AGG | 0.409533 | 1.3:-57624893 | None:intergenic |
TTCGAGCACCACCTTGAATC+TGG | 0.412506 | 1.3:+57621109 | MS.gene44031:CDS |
ATGCCGGTGTTACCACTTGT+TGG | 0.412993 | 1.3:-57617677 | None:intergenic |
ATGCCGGTGTTACCACTTGT+TGG | 0.412993 | 1.3:-57623584 | None:intergenic |
TTGCAGATGGGAATTTCATC+AGG | 0.416958 | 1.3:+57620052 | MS.gene44031:intron |
TTGCAGATGGGAATTTCATC+AGG | 0.417954 | 1.3:+57625231 | MS.gene44031:intron |
GGAACTGGAGGAACAGTAAC+AGG | 0.423268 | 1.3:+57623991 | MS.gene44031:CDS |
ATTGAAGATGCTGAGAATAA+AGG | 0.425340 | 1.3:+57622627 | MS.gene44031:CDS |
TTGGTTGCAGGGATAGGAAC+TGG | 0.425930 | 1.3:+57623976 | MS.gene44031:CDS |
TTGTTCAGCTTCATGCCTGA+TGG | 0.429194 | 1.3:-57625690 | None:intergenic |
CAGCAGCTGCAATAAAATTA+GGG | 0.431631 | 1.3:+57620083 | MS.gene44031:CDS |
CAGCACCGATCCCTTGGATT+AGG | 0.432171 | 1.3:-57619043 | None:intergenic |
CTATTCATACCTTGATCTCT+GGG | 0.435238 | 1.3:-57618133 | None:intergenic |
CTTTCAAGACTCACATAAGC+TGG | 0.442324 | 1.3:-57617752 | None:intergenic |
CGACACCAGCACCGATCCCT+TGG | 0.442965 | 1.3:-57619049 | None:intergenic |
AGGCGTTAACTGAAGAAGTC+AGG | 0.448489 | 1.3:+57621048 | MS.gene44031:CDS |
GACCCTGCCAAAGGAATTGA+TGG | 0.448526 | 1.3:+57617818 | MS.gene44031:CDS |
GACAATACCTTTGGATTGGC+AGG | 0.450270 | 1.3:-57623818 | None:intergenic |
GTGTTAAGTTACTGCGGGGT+TGG | 0.452083 | 1.3:+57621131 | MS.gene44031:CDS |
GTTACTGCGGGGTTGGAGTC+CGG | 0.452551 | 1.3:+57621138 | MS.gene44031:CDS |
GAGTTGATGCTTTGGTTGCA+GGG | 0.455243 | 1.3:+57618057 | MS.gene44031:CDS |
ACACCATCAATTCCTTTGGC+AGG | 0.457831 | 1.3:-57617821 | None:intergenic |
TGATACCAGCACCGATCCCT+TGG | 0.461638 | 1.3:-57624472 | None:intergenic |
AGAAGATCAACTTCCAGAAC+AGG | 0.462745 | 1.3:-57624500 | None:intergenic |
GTAGATCAACTTCCAGGATA+GGG | 0.464520 | 1.3:-57619076 | None:intergenic |
ATATTCATACCTTAATCTCT+GGG | 0.465144 | 1.3:-57624041 | None:intergenic |
ATCTGGTGTTAAGTTACTGC+GGG | 0.470773 | 1.3:+57621126 | MS.gene44031:CDS |
TGTAAATAACACCTTTGGAT+TGG | 0.472231 | 1.3:-57617915 | None:intergenic |
AAATTGATGCTTTGGTTGCA+GGG | 0.474338 | 1.3:+57623965 | MS.gene44031:CDS |
AAGCTGCTTGCCTTGAAAGA+AGG | 0.474497 | 1.3:+57619442 | MS.gene44031:CDS |
AAGCTGCTTGCCTTGAAAGA+AGG | 0.474497 | 1.3:+57624883 | MS.gene44031:CDS |
GCAGCTGCTGCAATTAAACT+AGG | 0.477493 | 1.3:+57625261 | MS.gene44031:CDS |
TGGTTGCAGGGATAGGAACT+GGG | 0.484341 | 1.3:+57618069 | MS.gene44031:CDS |
GTTCTGAATGGAGGAAAGTC+AGG | 0.487757 | 1.3:+57624164 | MS.gene44031:CDS |
GGGGAACAGTAACAGGTGTT+GGG | 0.494810 | 1.3:+57618090 | MS.gene44031:CDS |
CGAATCCAAGGGATCGGTGC+TGG | 0.495485 | 1.3:+57624467 | MS.gene44031:CDS |
GATGCTTTGGTTGCAGGGAT+AGG | 0.501960 | 1.3:+57618062 | MS.gene44031:CDS |
GATGCTTTGGTTGCAGGGAT+AGG | 0.501960 | 1.3:+57623970 | MS.gene44031:CDS |
AGTAGATCAACTTCCAGGAT+AGG | 0.502056 | 1.3:-57619077 | None:intergenic |
CCTGAGATTTGGAGAGACTC+TGG | 0.503327 | 1.3:+57623937 | MS.gene44031:CDS |
TTCAAGGTGGTGCTCGAACT+AGG | 0.503705 | 1.3:-57621104 | None:intergenic |
AAGTAACGCTCTCCAGAACT+AGG | 0.504133 | 1.3:-57625647 | None:intergenic |
TCTGAAAGTGCAGTTCTGAA+TGG | 0.514085 | 1.3:+57618239 | MS.gene44031:CDS |
TTCAGAACTGGACTTTCAGT+TGG | 0.514744 | 1.3:-57624149 | None:intergenic |
ATTGAAGATGCCGAGAGTAA+AGG | 0.514802 | 1.3:+57617216 | MS.gene44031:CDS |
CTAATCCAAGGGATCGGTGC+TGG | 0.516701 | 1.3:+57619044 | MS.gene44031:CDS |
TTACCTTTCCAGGTGTAATG+AGG | 0.523442 | 1.3:-57617239 | None:intergenic |
GAGGAACAGTAACAGGTGTT+GGG | 0.527424 | 1.3:+57623998 | MS.gene44031:CDS |
AATAAAGGTCTCATTACTCC+GGG | 0.527860 | 1.3:+57622642 | MS.gene44031:CDS |
TAGATTCATTATGAGACCAC+TGG | 0.531764 | 1.3:+57623913 | MS.gene44031:intron |
GGAGGAACAGTAACAGGTGT+TGG | 0.532217 | 1.3:+57623997 | MS.gene44031:CDS |
GTAACTTAACACCAGATTCA+AGG | 0.533402 | 1.3:-57621120 | None:intergenic |
AAAGGCAATCATCGAATCCA+AGG | 0.533837 | 1.3:+57624455 | MS.gene44031:intron |
TTCAGAACTGCACTTTCAGA+TGG | 0.538348 | 1.3:-57618236 | None:intergenic |
GAATAAAGGTCTCATTACTC+CGG | 0.542326 | 1.3:+57622641 | MS.gene44031:CDS |
CCTGAGATTTGGAAAGACTC+TGG | 0.544001 | 1.3:+57618029 | MS.gene44031:CDS |
ACAAGTGGTAACACCGGCAT+AGG | 0.544602 | 1.3:+57617680 | MS.gene44031:CDS |
ACAAGTGGTAACACCGGCAT+AGG | 0.544602 | 1.3:+57623587 | MS.gene44031:CDS |
GTTCTGAATGGAGGAAAGCC+AGG | 0.546295 | 1.3:+57618251 | MS.gene44031:CDS |
TAGATTCATTACGAGACCAC+TGG | 0.548191 | 1.3:+57618005 | MS.gene44031:intron |
CTTCTTCAGTTAACGCCTTG+AGG | 0.549813 | 1.3:-57621043 | None:intergenic |
TGTAATGAGGCCTTTACTCT+CGG | 0.551658 | 1.3:-57617226 | None:intergenic |
ACTGAAAGTCCAGTTCTGAA+TGG | 0.553938 | 1.3:+57624152 | MS.gene44031:CDS |
GTCTGGAACAGTTGACCTCA+AGG | 0.554586 | 1.3:+57621028 | MS.gene44031:intron |
CACCATCAATTCCTTTGGCA+GGG | 0.555618 | 1.3:-57617820 | None:intergenic |
GGCGTCGATAGCAGCAATGA+GGG | 0.558283 | 1.3:+57617706 | MS.gene44031:CDS |
GGCGTCGATAGCAGCAATGA+GGG | 0.558283 | 1.3:+57623613 | MS.gene44031:CDS |
TGGTAACACCGGCATAGGAT+TGG | 0.559661 | 1.3:+57617685 | MS.gene44031:CDS |
TGGTAACACCGGCATAGGAT+TGG | 0.559661 | 1.3:+57623592 | MS.gene44031:CDS |
AGGCCTCATTACACCTGGAA+AGG | 0.563587 | 1.3:+57617236 | MS.gene44031:CDS |
GGGAAGAGACCAGAAAATGC+AGG | 0.570015 | 1.3:+57620103 | MS.gene44031:CDS |
AGGTCTCATTACTCCGGGAA+AGG | 0.571702 | 1.3:+57622647 | MS.gene44031:CDS |
GGGAAGAGACCAGAAAATGT+AGG | 0.573068 | 1.3:+57625282 | MS.gene44031:CDS |
AAAGGCAAACACCTAATCCA+AGG | 0.576831 | 1.3:+57619032 | MS.gene44031:intron |
TAGATCAACTTCCAGGATAG+GGG | 0.577360 | 1.3:-57619075 | None:intergenic |
CAGCTGCTGCAATTAAACTA+GGG | 0.579559 | 1.3:+57625262 | MS.gene44031:CDS |
GGCGTTAACTGAAGAAGTCA+GGG | 0.587986 | 1.3:+57621049 | MS.gene44031:CDS |
AGTAAAGGCCTCATTACACC+TGG | 0.589255 | 1.3:+57617231 | MS.gene44031:CDS |
TTGTGACAATACCTTTGGAT+TGG | 0.589413 | 1.3:-57623822 | None:intergenic |
GTTCTTGTTGAGCCAACAAG+TGG | 0.593333 | 1.3:+57617665 | MS.gene44031:CDS |
GTTCTTGTTGAGCCAACAAG+TGG | 0.594354 | 1.3:+57623572 | MS.gene44031:CDS |
TTTCCAAATCTCAGGGCCAG+TGG | 0.596982 | 1.3:-57618021 | None:intergenic |
TCTCCAAATCTCAGGGCCAG+TGG | 0.596982 | 1.3:-57623929 | None:intergenic |
TATCGACGCCAATCCTATGC+CGG | 0.597404 | 1.3:-57617693 | None:intergenic |
TATCGACGCCAATCCTATGC+CGG | 0.597404 | 1.3:-57623600 | None:intergenic |
AGATTTGGAAAGACTCTGGA+GGG | 0.598831 | 1.3:+57618033 | MS.gene44031:CDS |
CAGAGTCTTTCCAAATCTCA+GGG | 0.601201 | 1.3:-57618028 | None:intergenic |
GAGATTTGGAGAGACTCTGG+AGG | 0.605051 | 1.3:+57623940 | MS.gene44031:CDS |
GAGTTTGGAACACTTCTCTG+TGG | 0.606419 | 1.3:+57621080 | MS.gene44031:CDS |
AATCATCGAATCCAAGGGAT+CGG | 0.608426 | 1.3:+57624461 | MS.gene44031:CDS |
TGAAAATCCTGCCAATCCAA+AGG | 0.609275 | 1.3:+57623811 | MS.gene44031:CDS |
CAGAGTCTCTCCAAATCTCA+GGG | 0.609348 | 1.3:-57623936 | None:intergenic |
TGAAAACTCTGCCAATCCAA+AGG | 0.611620 | 1.3:+57617904 | MS.gene44031:CDS |
GAGATTTGGAAAGACTCTGG+AGG | 0.616942 | 1.3:+57618032 | MS.gene44031:CDS |
ACTGCGAGCTTTCGGAGCCG+AGG | 0.618497 | 1.3:+57617784 | MS.gene44031:CDS |
TGGCGTCGATAGCAGCAATG+AGG | 0.618801 | 1.3:+57617705 | MS.gene44031:CDS |
TGGCGTCGATAGCAGCAATG+AGG | 0.618801 | 1.3:+57623612 | MS.gene44031:CDS |
AATCTGGTGTTAAGTTACTG+CGG | 0.626916 | 1.3:+57621125 | MS.gene44031:CDS |
AGATCAACTTCCAGAACAGG+AGG | 0.628629 | 1.3:-57624497 | None:intergenic |
AAACACCTAATCCAAGGGAT+CGG | 0.628864 | 1.3:+57619038 | MS.gene44031:CDS |
TATCTAACAGATCCTGCCAA+AGG | 0.634070 | 1.3:+57623716 | MS.gene44031:CDS |
AGATCAACTTCCAGGATAGG+GGG | 0.642892 | 1.3:-57619074 | None:intergenic |
AAGGCAAACACCTAATCCAA+GGG | 0.643306 | 1.3:+57619033 | MS.gene44031:intron |
GAAAGTCCAGTTCTGAATGG+AGG | 0.649334 | 1.3:+57624155 | MS.gene44031:CDS |
AGGGTCTGTCAAATATACCT+CGG | 0.651115 | 1.3:-57617801 | None:intergenic |
AAGGCAATCATCGAATCCAA+GGG | 0.655977 | 1.3:+57624456 | MS.gene44031:intron |
TATTTGACAGACCCTGCCAA+AGG | 0.662474 | 1.3:+57617809 | MS.gene44031:CDS |
AGGTGTTGGGAAGTTCCTCA+AGG | 0.665059 | 1.3:+57618103 | MS.gene44031:CDS |
AGATTTGGAGAGACTCTGGA+GGG | 0.665402 | 1.3:+57623941 | MS.gene44031:CDS |
GAAAGTGCAGTTCTGAATGG+AGG | 0.666727 | 1.3:+57618242 | MS.gene44031:CDS |
GGTTGCAGGGATAGGAACTG+GGG | 0.673121 | 1.3:+57618070 | MS.gene44031:CDS |
GAGCCAACAAGTGGTAACAC+CGG | 0.677684 | 1.3:+57617674 | MS.gene44031:CDS |
GAGCCAACAAGTGGTAACAC+CGG | 0.677684 | 1.3:+57623581 | MS.gene44031:CDS |
GTTGCAGGGATAGGAACTGG+AGG | 0.696987 | 1.3:+57623979 | MS.gene44031:CDS |
GCGTCGATAGCAGCAATGAG+GGG | 0.705710 | 1.3:+57617707 | MS.gene44031:CDS |
GCGTCGATAGCAGCAATGAG+GGG | 0.705710 | 1.3:+57623614 | MS.gene44031:CDS |
GTTGCAGGGATAGGAACTGG+GGG | 0.729118 | 1.3:+57618071 | MS.gene44031:CDS |
TCTGGTGTTAAGTTACTGCG+GGG | 0.762944 | 1.3:+57621127 | MS.gene44031:CDS |
ACTTAACACCAGATTCAAGG+TGG | 0.770455 | 1.3:-57621117 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 57617213 | 57625727 | 57617213 | ID=MS.gene44031 |
chr1.3 | mRNA | 57617213 | 57625727 | 57617213 | ID=MS.gene44031.t1;Parent=MS.gene44031 |
chr1.3 | exon | 57617213 | 57617257 | 57617213 | ID=MS.gene44031.t1.exon1;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57617213 | 57617257 | 57617213 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57617662 | 57617925 | 57617662 | ID=MS.gene44031.t1.exon2;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57617662 | 57617925 | 57617662 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57618008 | 57618145 | 57618008 | ID=MS.gene44031.t1.exon3;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57618008 | 57618145 | 57618008 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57618221 | 57618272 | 57618221 | ID=MS.gene44031.t1.exon4;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57618221 | 57618272 | 57618221 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57619036 | 57619115 | 57619036 | ID=MS.gene44031.t1.exon5;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57619036 | 57619115 | 57619036 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57619412 | 57619471 | 57619412 | ID=MS.gene44031.t1.exon6;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57619412 | 57619471 | 57619412 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57620058 | 57620138 | 57620058 | ID=MS.gene44031.t1.exon7;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57620058 | 57620138 | 57620058 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57621029 | 57621159 | 57621029 | ID=MS.gene44031.t1.exon8;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57621029 | 57621159 | 57621029 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57622611 | 57622668 | 57622611 | ID=MS.gene44031.t1.exon9;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57622611 | 57622668 | 57622611 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57623569 | 57623832 | 57623569 | ID=MS.gene44031.t1.exon10;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57623569 | 57623832 | 57623569 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57623916 | 57624053 | 57623916 | ID=MS.gene44031.t1.exon11;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57623916 | 57624053 | 57623916 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57624134 | 57624185 | 57624134 | ID=MS.gene44031.t1.exon12;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57624134 | 57624185 | 57624134 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57624459 | 57624538 | 57624459 | ID=MS.gene44031.t1.exon13;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57624459 | 57624538 | 57624459 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57624853 | 57624912 | 57624853 | ID=MS.gene44031.t1.exon14;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57624853 | 57624912 | 57624853 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57625237 | 57625317 | 57625237 | ID=MS.gene44031.t1.exon15;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57625237 | 57625317 | 57625237 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
chr1.3 | exon | 57625638 | 57625727 | 57625638 | ID=MS.gene44031.t1.exon16;Parent=MS.gene44031.t1 |
chr1.3 | CDS | 57625638 | 57625727 | 57625638 | ID=cds.MS.gene44031.t1;Parent=MS.gene44031.t1 |
Gene Sequence |
Protein sequence |