Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058736.t1 | XP_003591035.2 | 89.3 | 205 | 9 | 1 | 1 | 192 | 90 | 294 | 7.10E-92 | 346.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058736.t1 | Q43317 | 70.6 | 204 | 47 | 1 | 2 | 192 | 92 | 295 | 6.1e-76 | 285.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058736.t1 | G7I7F0 | 89.3 | 205 | 9 | 1 | 1 | 192 | 90 | 294 | 5.1e-92 | 346.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050558 | MS.gene058736 | 0.821197 | 4.59E-53 | -1.69E-46 |
| MS.gene050560 | MS.gene058736 | 0.828037 | 1.12E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene058736 | 0.822046 | 2.92E-53 | -1.69E-46 |
| MS.gene053584 | MS.gene058736 | 0.80814 | 3.58E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene058736 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene055804 | MS.gene058736 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene058736 | 0.805585 | 1.24E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene058739 | 0.892615 | 1.35E-74 | -1.69E-46 |
| MS.gene058736 | MS.gene058935 | 0.80506 | 1.60E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene06347 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene065923 | 0.809095 | 2.24E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene067367 | 0.803666 | 3.13E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene06900 | 0.803016 | 4.26E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene071610 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene058736 | MS.gene072618 | 0.817333 | 3.48E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene073438 | 0.804621 | 1.98E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene23532 | 0.809568 | 1.77E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene27938 | 0.823312 | 1.48E-53 | -1.69E-46 |
| MS.gene058736 | MS.gene28224 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene32717 | 0.816453 | 5.49E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene36862 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene36863 | 0.814531 | 1.47E-51 | -1.69E-46 |
| MS.gene058736 | MS.gene40942 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene058736 | MS.gene43452 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene43917 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene058736 | MS.gene44031 | 0.822383 | 2.44E-53 | -1.69E-46 |
| MS.gene058736 | MS.gene44461 | 0.808148 | 3.57E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene46126 | 0.801745 | 7.79E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene52059 | 0.803947 | 2.73E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene52596 | 0.823738 | 1.18E-53 | -1.69E-46 |
| MS.gene058736 | MS.gene53200 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene058736 | MS.gene53771 | 0.80366 | 3.14E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene57078 | 0.810553 | 1.09E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene57413 | 0.811228 | 7.78E-51 | -1.69E-46 |
| MS.gene058736 | MS.gene59010 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene058736 | MS.gene60204 | 0.808785 | 2.61E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene60206 | 0.808973 | 2.38E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene61139 | 0.816941 | 4.27E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene61670 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene058736 | MS.gene63288 | 0.815728 | 7.97E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene63507 | 0.833002 | 6.85E-56 | -1.69E-46 |
| MS.gene058736 | MS.gene67226 | 0.819 | 1.46E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene69238 | 0.80573 | 1.16E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene70798 | 0.846658 | 1.89E-59 | -1.69E-46 |
| MS.gene058736 | MS.gene73226 | 0.812602 | 3.90E-51 | -1.69E-46 |
| MS.gene058736 | MS.gene76554 | 0.806337 | 8.64E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene83831 | 0.827057 | 1.93E-54 | -1.69E-46 |
| MS.gene058736 | MS.gene86434 | 0.80794 | 3.95E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene87549 | 0.813533 | 2.44E-51 | -1.69E-46 |
| MS.gene058736 | MS.gene88091 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene89017 | 0.815367 | 9.59E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene93500 | 0.819634 | 1.05E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene93892 | 0.805436 | 1.34E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene94499 | 0.824012 | 1.02E-53 | -1.69E-46 |
| MS.gene058736 | MS.gene97211 | 0.829426 | 5.18E-55 | -1.69E-46 |
| MS.gene058736 | MS.gene99802 | 0.810526 | 1.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058736.t1 | MTR_1g081620 | 89.268 | 205 | 9 | 1 | 1 | 192 | 90 | 294 | 6.84e-117 | 335 |
| MS.gene058736.t1 | MTR_1g081625 | 77.561 | 205 | 33 | 1 | 1 | 192 | 90 | 294 | 4.06e-106 | 307 |
| MS.gene058736.t1 | MTR_1g081640 | 80.000 | 195 | 26 | 1 | 1 | 182 | 90 | 284 | 2.04e-97 | 285 |
| MS.gene058736.t1 | MTR_1g081610 | 67.647 | 204 | 53 | 1 | 2 | 192 | 92 | 295 | 3.96e-84 | 251 |
| MS.gene058736.t1 | MTR_5g006340 | 65.686 | 204 | 57 | 1 | 2 | 192 | 92 | 295 | 2.00e-82 | 247 |
| MS.gene058736.t1 | MTR_4g087490 | 57.843 | 204 | 73 | 1 | 2 | 192 | 131 | 334 | 2.14e-82 | 248 |
| MS.gene058736.t1 | MTR_1g103690 | 64.216 | 204 | 60 | 1 | 2 | 192 | 92 | 295 | 9.44e-81 | 243 |
| MS.gene058736.t1 | MTR_7g078070 | 56.098 | 205 | 77 | 1 | 1 | 192 | 51 | 255 | 1.26e-78 | 236 |
| MS.gene058736.t1 | MTR_7g078070 | 56.098 | 205 | 77 | 1 | 1 | 192 | 84 | 288 | 3.37e-78 | 236 |
| MS.gene058736.t1 | MTR_7g078070 | 56.098 | 205 | 77 | 1 | 1 | 192 | 144 | 348 | 8.44e-78 | 237 |
| MS.gene058736.t1 | MTR_4g087510 | 55.882 | 204 | 69 | 2 | 2 | 192 | 130 | 325 | 3.19e-76 | 233 |
| MS.gene058736.t1 | MTR_4g087520 | 57.635 | 203 | 73 | 1 | 2 | 191 | 37 | 239 | 4.40e-75 | 227 |
| MS.gene058736.t1 | MTR_7g087110 | 54.680 | 203 | 69 | 2 | 2 | 191 | 149 | 341 | 2.96e-60 | 192 |
| MS.gene058736.t1 | MTR_5g095670 | 31.210 | 157 | 78 | 2 | 56 | 182 | 221 | 377 | 4.19e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058736.t1 | AT4G14880 | 63.235 | 204 | 62 | 1 | 2 | 192 | 89 | 292 | 6.57e-83 | 248 |
| MS.gene058736.t1 | AT4G14880 | 63.235 | 204 | 62 | 1 | 2 | 192 | 89 | 292 | 6.57e-83 | 248 |
| MS.gene058736.t1 | AT4G14880 | 63.235 | 204 | 62 | 1 | 2 | 192 | 89 | 292 | 6.57e-83 | 248 |
| MS.gene058736.t1 | AT4G14880 | 63.235 | 204 | 62 | 1 | 2 | 192 | 89 | 292 | 6.57e-83 | 248 |
| MS.gene058736.t1 | AT4G14880 | 63.235 | 204 | 62 | 1 | 2 | 192 | 89 | 292 | 6.57e-83 | 248 |
| MS.gene058736.t1 | AT3G04940 | 65.686 | 204 | 57 | 1 | 2 | 192 | 92 | 295 | 7.46e-83 | 248 |
| MS.gene058736.t1 | AT3G04940 | 65.686 | 204 | 57 | 1 | 2 | 192 | 92 | 295 | 7.46e-83 | 248 |
| MS.gene058736.t1 | AT3G22460 | 67.016 | 191 | 56 | 1 | 2 | 192 | 37 | 220 | 1.61e-82 | 245 |
| MS.gene058736.t1 | AT2G43750 | 63.547 | 203 | 61 | 1 | 2 | 191 | 159 | 361 | 1.99e-81 | 247 |
| MS.gene058736.t1 | AT2G43750 | 63.547 | 203 | 61 | 1 | 2 | 191 | 159 | 361 | 1.99e-81 | 247 |
| MS.gene058736.t1 | AT3G59760 | 62.562 | 203 | 63 | 1 | 2 | 191 | 197 | 399 | 6.80e-81 | 247 |
| MS.gene058736.t1 | AT3G59760 | 62.562 | 203 | 63 | 1 | 2 | 191 | 197 | 399 | 7.39e-81 | 247 |
| MS.gene058736.t1 | AT3G59760 | 62.562 | 203 | 63 | 1 | 2 | 191 | 197 | 399 | 1.02e-80 | 246 |
| MS.gene058736.t1 | AT3G61440 | 55.122 | 205 | 79 | 1 | 1 | 192 | 11 | 215 | 1.61e-76 | 229 |
| MS.gene058736.t1 | AT3G61440 | 55.122 | 205 | 79 | 1 | 1 | 192 | 36 | 240 | 4.18e-76 | 229 |
| MS.gene058736.t1 | AT3G61440 | 55.122 | 205 | 79 | 1 | 1 | 192 | 132 | 336 | 2.20e-75 | 231 |
| MS.gene058736.t1 | AT5G28020 | 58.333 | 204 | 72 | 1 | 2 | 192 | 5 | 208 | 3.68e-72 | 218 |
| MS.gene058736.t1 | AT5G28020 | 58.333 | 204 | 72 | 1 | 2 | 192 | 91 | 294 | 2.14e-71 | 219 |
| MS.gene058736.t1 | AT5G28020 | 58.333 | 204 | 72 | 1 | 2 | 192 | 91 | 294 | 2.14e-71 | 219 |
| MS.gene058736.t1 | AT5G28020 | 58.333 | 204 | 72 | 1 | 2 | 192 | 91 | 294 | 2.14e-71 | 219 |
| MS.gene058736.t1 | AT5G28020 | 58.333 | 204 | 72 | 1 | 2 | 192 | 91 | 294 | 2.14e-71 | 219 |
| MS.gene058736.t1 | AT5G28020 | 58.333 | 204 | 72 | 1 | 2 | 192 | 91 | 294 | 2.14e-71 | 219 |
| MS.gene058736.t1 | AT5G28030 | 58.824 | 204 | 71 | 1 | 2 | 192 | 91 | 294 | 1.34e-70 | 217 |
| MS.gene058736.t1 | AT5G28030 | 58.824 | 204 | 71 | 1 | 2 | 192 | 91 | 294 | 1.34e-70 | 217 |
| MS.gene058736.t1 | AT5G28030 | 58.824 | 204 | 71 | 1 | 2 | 192 | 91 | 294 | 1.34e-70 | 217 |
| MS.gene058736.t1 | AT5G28030 | 58.824 | 204 | 71 | 1 | 2 | 192 | 91 | 294 | 1.34e-70 | 217 |
| MS.gene058736.t1 | AT3G61440 | 51.381 | 181 | 75 | 1 | 1 | 168 | 132 | 312 | 2.75e-62 | 196 |
| MS.gene058736.t1 | AT3G03630 | 56.650 | 203 | 65 | 2 | 2 | 191 | 183 | 375 | 3.05e-59 | 190 |
| MS.gene058736.t1 | AT5G28030 | 55.000 | 160 | 59 | 1 | 2 | 148 | 91 | 250 | 2.71e-53 | 171 |
| MS.gene058736.t1 | AT3G22460 | 74.227 | 97 | 25 | 0 | 2 | 98 | 92 | 188 | 3.16e-49 | 158 |
| MS.gene058736.t1 | AT1G55880 | 28.662 | 157 | 82 | 2 | 56 | 182 | 218 | 374 | 1.08e-14 | 71.6 |
| MS.gene058736.t1 | AT1G55880 | 57.447 | 47 | 20 | 0 | 56 | 102 | 218 | 264 | 3.86e-12 | 64.3 |
Find 51 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCAGCTGCAATAAAATT+AGG | 0.184994 | 1.1:-14944057 | MS.gene058736:CDS |
| TGCCTTGAAAGAAGGTTTAC+TGG | 0.283658 | 1.1:-14944689 | MS.gene058736:intron |
| TTGGTTGCAGGGATAGGAAC+TGG | 0.301174 | 1.1:-14946066 | MS.gene058736:CDS |
| AGAGTTGATGCTTTGGTTGC+AGG | 0.314791 | 1.1:-14946078 | MS.gene058736:CDS |
| AGACCACTGGCCCTGAGATT+TGG | 0.324065 | 1.1:-14946116 | MS.gene058736:CDS |
| TGGAGGGAGAGTTGATGCTT+TGG | 0.358657 | 1.1:-14946085 | MS.gene058736:CDS |
| CCAGAGTCTTTCCAAATCTC+AGG | 0.373679 | 1.1:+14946105 | None:intergenic |
| CATCTAGTAGATCAACTTCC+AGG | 0.383555 | 1.1:+14945055 | None:intergenic |
| AAAATTATACTGCGAGCTTT+CGG | 0.393798 | 1.1:-14946358 | MS.gene058736:CDS |
| TGATTGAGCATATAACTATT+AGG | 0.407097 | 1.1:+14946256 | None:intergenic |
| TACCAGTAAACCTTCTTTCA+AGG | 0.409533 | 1.1:+14944687 | None:intergenic |
| TTGCAGATGGGAATTTCATC+AGG | 0.416958 | 1.1:-14944087 | MS.gene058736:intron |
| CAGCAGCTGCAATAAAATTA+GGG | 0.431631 | 1.1:-14944056 | MS.gene058736:CDS |
| CAGCACCGATCCCTTGGATT+AGG | 0.432171 | 1.1:+14945094 | None:intergenic |
| CTTTCAAGACTCACATAAGC+TGG | 0.442324 | 1.1:+14946382 | None:intergenic |
| CGACACCAGCACCGATCCCT+TGG | 0.442965 | 1.1:+14945088 | None:intergenic |
| GACCCTGCCAAAGGAATTGA+TGG | 0.448526 | 1.1:-14946316 | MS.gene058736:CDS |
| GAGTTGATGCTTTGGTTGCA+GGG | 0.455243 | 1.1:-14946077 | MS.gene058736:CDS |
| ACACCATCAATTCCTTTGGC+AGG | 0.457831 | 1.1:+14946313 | None:intergenic |
| GTAGATCAACTTCCAGGATA+GGG | 0.464520 | 1.1:+14945061 | None:intergenic |
| TGTAAATAACACCTTTGGAT+TGG | 0.472231 | 1.1:+14946219 | None:intergenic |
| AAGCTGCTTGCCTTGAAAGA+AGG | 0.474497 | 1.1:-14944697 | MS.gene058736:CDS |
| TCTACTAGATGAAGTTATTG+AGG | 0.479345 | 1.1:-14945043 | MS.gene058736:intron |
| TGGTTGCAGGGATAGGAACT+GGG | 0.484341 | 1.1:-14946065 | MS.gene058736:CDS |
| GATGCTTTGGTTGCAGGGAT+AGG | 0.501960 | 1.1:-14946072 | MS.gene058736:CDS |
| AGTAGATCAACTTCCAGGAT+AGG | 0.502056 | 1.1:+14945060 | None:intergenic |
| TCTGAAAGTGCAGTTCTGAA+TGG | 0.514085 | 1.1:-14945897 | MS.gene058736:CDS |
| CTAATCCAAGGGATCGGTGC+TGG | 0.516701 | 1.1:-14945093 | MS.gene058736:CDS |
| TTCAGAACTGCACTTTCAGA+TGG | 0.538348 | 1.1:+14945900 | None:intergenic |
| CCTGAGATTTGGAAAGACTC+TGG | 0.544001 | 1.1:-14946105 | MS.gene058736:CDS |
| GTTCTGAATGGAGGAAAGCC+AGG | 0.546295 | 1.1:-14945885 | MS.gene058736:intron |
| TAGATTCATTACGAGACCAC+TGG | 0.548191 | 1.1:-14946129 | MS.gene058736:CDS |
| CACCATCAATTCCTTTGGCA+GGG | 0.555618 | 1.1:+14946314 | None:intergenic |
| GGGAAGAGACCAGAAAATGC+AGG | 0.570015 | 1.1:-14944036 | MS.gene058736:CDS |
| AAAGGCAAACACCTAATCCA+AGG | 0.576831 | 1.1:-14945105 | MS.gene058736:intron |
| TAGATCAACTTCCAGGATAG+GGG | 0.577360 | 1.1:+14945062 | None:intergenic |
| TTTCCAAATCTCAGGGCCAG+TGG | 0.596982 | 1.1:+14946113 | None:intergenic |
| AGATTTGGAAAGACTCTGGA+GGG | 0.598831 | 1.1:-14946101 | MS.gene058736:CDS |
| CAGAGTCTTTCCAAATCTCA+GGG | 0.601201 | 1.1:+14946106 | None:intergenic |
| TGAAAACTCTGCCAATCCAA+AGG | 0.611620 | 1.1:-14946230 | MS.gene058736:intron |
| GAGATTTGGAAAGACTCTGG+AGG | 0.616942 | 1.1:-14946102 | MS.gene058736:CDS |
| ACTGCGAGCTTTCGGAGCCG+AGG | 0.618497 | 1.1:-14946350 | MS.gene058736:CDS |
| AAACACCTAATCCAAGGGAT+CGG | 0.628864 | 1.1:-14945099 | MS.gene058736:CDS |
| AGATCAACTTCCAGGATAGG+GGG | 0.642892 | 1.1:+14945063 | None:intergenic |
| AAGGCAAACACCTAATCCAA+GGG | 0.643306 | 1.1:-14945104 | MS.gene058736:CDS |
| AGGGTCTGTCAAATATACCT+CGG | 0.651115 | 1.1:+14946333 | None:intergenic |
| TATTTGACAGACCCTGCCAA+AGG | 0.662474 | 1.1:-14946325 | MS.gene058736:CDS |
| GAAAGTGCAGTTCTGAATGG+AGG | 0.666727 | 1.1:-14945894 | MS.gene058736:CDS |
| GGTTGCAGGGATAGGAACTG+GGG | 0.673121 | 1.1:-14946064 | MS.gene058736:CDS |
| GCGTCGATAGCAGCAATGAG+GGG | 0.705710 | 1.1:-14946427 | None:intergenic |
| GTTGCAGGGATAGGAACTGG+GGG | 0.729118 | 1.1:-14946063 | MS.gene058736:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTAACAAATTATGC+AGG | + | chr1.1:14945530-14945549 | None:intergenic | 15.0% |
| !! | AAAACAACGACAAAATTAAT+TGG | + | chr1.1:14944287-14944306 | None:intergenic | 20.0% |
| !! | TATTTGATTCTTCTAATTTC+TGG | - | chr1.1:14945609-14945628 | MS.gene058736:intron | 20.0% |
| !! | TTAGAATTGTTCTATCAAAT+TGG | - | chr1.1:14945010-14945029 | MS.gene058736:intron | 20.0% |
| !!! | ACAGTTCATATTTTCTAATT+TGG | - | chr1.1:14944236-14944255 | MS.gene058736:intron | 20.0% |
| !!! | TATTTTCTAATTTGGTTGTT+TGG | - | chr1.1:14944244-14944263 | MS.gene058736:intron | 20.0% |
| ! | AATACTAGCTGTTAATACAA+GGG | - | chr1.1:14945650-14945669 | MS.gene058736:intron | 25.0% |
| ! | ACATAGACATACAACAAATT+GGG | + | chr1.1:14944771-14944790 | None:intergenic | 25.0% |
| ! | AGCATAACAAAATGACATTA+CGG | + | chr1.1:14945966-14945985 | None:intergenic | 25.0% |
| ! | GTTATATAACACAAAACTGA+AGG | + | chr1.1:14945824-14945843 | None:intergenic | 25.0% |
| ! | GTTATATAACTCAGCAAATA+TGG | - | chr1.1:14945834-14945853 | MS.gene058736:intron | 25.0% |
| ! | TACATAGACATACAACAAAT+TGG | + | chr1.1:14944772-14944791 | None:intergenic | 25.0% |
| ! | TGATTGAGCATATAACTATT+AGG | + | chr1.1:14944182-14944201 | None:intergenic | 25.0% |
| ! | TGGAAAAATCAATCAGTTAA+CGG | + | chr1.1:14945296-14945315 | None:intergenic | 25.0% |
| ! | TGTGAATGTTATTGTATTCT+TGG | - | chr1.1:14944628-14944647 | MS.gene058736:intron | 25.0% |
| !! | AACCTTTTATGTTTGGATTT+TGG | + | chr1.1:14944934-14944953 | None:intergenic | 25.0% |
| !! | AAGAGTTTAGAAAGTTTGTT+AGG | + | chr1.1:14946296-14946315 | None:intergenic | 25.0% |
| !! | AGGTATAAACCTTTTATGTT+TGG | + | chr1.1:14944941-14944960 | None:intergenic | 25.0% |
| !! | TTTTATGTTTGGATTTTGGA+GGG | + | chr1.1:14944930-14944949 | None:intergenic | 25.0% |
| !!! | AATTTGTTGTATGTCTATGT+AGG | - | chr1.1:14944771-14944790 | MS.gene058736:intron | 25.0% |
| !!! | TATCAGTTTTTTCTAGAATC+TGG | - | chr1.1:14945447-14945466 | MS.gene058736:intron | 25.0% |
| !!! | TGATTTTGAGTATTTCTTTC+TGG | - | chr1.1:14944581-14944600 | MS.gene058736:intron | 25.0% |
| !!! | TTAGGAAATTATTGATGATG+TGG | + | chr1.1:14946222-14946241 | None:intergenic | 25.0% |
| AAAAACACCATCAATTCCTT+TGG | + | chr1.1:14944129-14944148 | None:intergenic | 30.0% | |
| AAAATTATACTGCGAGCTTT+CGG | - | chr1.1:14944077-14944096 | MS.gene058736:CDS | 30.0% | |
| ATAGAACCCTTATTATGGTT+TGG | + | chr1.1:14946125-14946144 | None:intergenic | 30.0% | |
| ATTGTTCTATCAAATTGGCT+TGG | - | chr1.1:14945015-14945034 | MS.gene058736:intron | 30.0% | |
| CAAAATCGATATGTTACAGA+AGG | - | chr1.1:14946040-14946059 | MS.gene058736:intron | 30.0% | |
| CAATACTAGCTGTTAATACA+AGG | - | chr1.1:14945649-14945668 | MS.gene058736:intron | 30.0% | |
| CTCAAAATCATAAAATCACC+TGG | + | chr1.1:14944571-14944590 | None:intergenic | 30.0% | |
| CTCCAAAATCCAAACATAAA+AGG | - | chr1.1:14944929-14944948 | MS.gene058736:intron | 30.0% | |
| CTTGTATTAACAGCTAGTAT+TGG | + | chr1.1:14945651-14945670 | None:intergenic | 30.0% | |
| TATTCAAGCATAACCATTTG+AGG | - | chr1.1:14945270-14945289 | MS.gene058736:intron | 30.0% | |
| TCCATTTGAACACATTTCAA+AGG | - | chr1.1:14945312-14945331 | MS.gene058736:intron | 30.0% | |
| TCTAATGTTTCTCATGATAG+TGG | + | chr1.1:14944995-14945014 | None:intergenic | 30.0% | |
| TCTACTAGATGAAGTTATTG+AGG | - | chr1.1:14945392-14945411 | MS.gene058736:intron | 30.0% | |
| TGAACTGTAAATAACACCTT+TGG | + | chr1.1:14944224-14944243 | None:intergenic | 30.0% | |
| TGCTCTCAATACTAATACAT+TGG | - | chr1.1:14945416-14945435 | MS.gene058736:intron | 30.0% | |
| TGTAAATAACACCTTTGGAT+TGG | + | chr1.1:14944219-14944238 | None:intergenic | 30.0% | |
| TTCTAATTTGGTTGTTTGGT+GGG | - | chr1.1:14944248-14944267 | MS.gene058736:intron | 30.0% | |
| TTTCTAATTTGGTTGTTTGG+TGG | - | chr1.1:14944247-14944266 | MS.gene058736:intron | 30.0% | |
| ! | ATATGAATGTCTTTTGCAGA+TGG | - | chr1.1:14946335-14946354 | MS.gene058736:CDS | 30.0% |
| ! | CTTTTATGTTTGGATTTTGG+AGG | + | chr1.1:14944931-14944950 | None:intergenic | 30.0% |
| ! | GAGAGTCTCATTTTATATGA+AGG | + | chr1.1:14945479-14945498 | None:intergenic | 30.0% |
| ! | TATGAATGTCTTTTGCAGAT+GGG | - | chr1.1:14946336-14946355 | MS.gene058736:CDS | 30.0% |
| ! | TGATAAATGTCTCTTTTCTG+AGG | + | chr1.1:14946096-14946115 | None:intergenic | 30.0% |
| !! | ACTCTCTTTTGTTTCTTTTC+GGG | - | chr1.1:14945493-14945512 | MS.gene058736:intron | 30.0% |
| !! | GACTCTCTTTTGTTTCTTTT+CGG | - | chr1.1:14945492-14945511 | MS.gene058736:intron | 30.0% |
| !! | TTTATGTTTGGATTTTGGAG+GGG | + | chr1.1:14944929-14944948 | None:intergenic | 30.0% |
| !!! | TTTTGTTATGCTGCTTTGAT+AGG | - | chr1.1:14945974-14945993 | MS.gene058736:intron | 30.0% |
| AAATTATGCAGGTTTCACGT+AGG | + | chr1.1:14945519-14945538 | None:intergenic | 35.0% | |
| ACAGCAGCTGCAATAAAATT+AGG | - | chr1.1:14946378-14946397 | MS.gene058736:CDS | 35.0% | |
| ACATACAACAAATTGGGACT+CGG | + | chr1.1:14944765-14944784 | None:intergenic | 35.0% | |
| ACATTACGGTGAGATATGAT+TGG | + | chr1.1:14945952-14945971 | None:intergenic | 35.0% | |
| ACCATAATAAGGGTTCTATC+TGG | - | chr1.1:14946126-14946145 | MS.gene058736:CDS | 35.0% | |
| ACTATTCATACCTTGATCTC+TGG | + | chr1.1:14944437-14944456 | None:intergenic | 35.0% | |
| ACTCAGTCCAAACCATAATA+AGG | - | chr1.1:14946115-14946134 | MS.gene058736:CDS | 35.0% | |
| ATACCTTAAACAGTCCTTAG+AGG | + | chr1.1:14944967-14944986 | None:intergenic | 35.0% | |
| CAGCAGCTGCAATAAAATTA+GGG | - | chr1.1:14946379-14946398 | MS.gene058736:CDS | 35.0% | |
| CTATTCATACCTTGATCTCT+GGG | + | chr1.1:14944436-14944455 | None:intergenic | 35.0% | |
| CTCAGTCCAAACCATAATAA+GGG | - | chr1.1:14946116-14946135 | MS.gene058736:CDS | 35.0% | |
| GAAGGATGATGCAAAAGATA+AGG | + | chr1.1:14946166-14946185 | None:intergenic | 35.0% | |
| TAAACAGTCCTTAGAGGAAA+AGG | + | chr1.1:14944961-14944980 | None:intergenic | 35.0% | |
| TAAGTCAATGACAACCCAAA+GGG | + | chr1.1:14945156-14945175 | None:intergenic | 35.0% | |
| TACCAGTAAACCTTCTTTCA+AGG | + | chr1.1:14945751-14945770 | None:intergenic | 35.0% | |
| TCCAGATAGAACCCTTATTA+TGG | + | chr1.1:14946130-14946149 | None:intergenic | 35.0% | |
| TGAAAGAAGGTTTACTGGTA+TGG | - | chr1.1:14945751-14945770 | MS.gene058736:intron | 35.0% | |
| TTGGAGAAAACTTGAAATGC+AGG | - | chr1.1:14945034-14945053 | MS.gene058736:intron | 35.0% | |
| TTGTATGTCTATGTAGGAGA+GGG | - | chr1.1:14944777-14944796 | MS.gene058736:intron | 35.0% | |
| ! | GGTTTATACCTTTTCCTCTA+AGG | - | chr1.1:14944950-14944969 | MS.gene058736:intron | 35.0% |
| ! | TTTCCTCTAAGGACTGTTTA+AGG | - | chr1.1:14944961-14944980 | MS.gene058736:intron | 35.0% |
| !! | GCCTTTGAAATGTGTTCAAA+TGG | + | chr1.1:14945316-14945335 | None:intergenic | 35.0% |
| !! | TAGAAAGTTTGTTAGGACAC+AGG | + | chr1.1:14946289-14946308 | None:intergenic | 35.0% |
| !!! | GGGATTTTGTTTTAACCACA+AGG | - | chr1.1:14945670-14945689 | MS.gene058736:intron | 35.0% |
| !!! | TTGCTGACTTGTCTGTTTTT+TGG | - | chr1.1:14945110-14945129 | MS.gene058736:intron | 35.0% |
| AAACACCTAATCCAAGGGAT+CGG | - | chr1.1:14945336-14945355 | MS.gene058736:intron | 40.0% | |
| AAAGGCAAACACCTAATCCA+AGG | - | chr1.1:14945330-14945349 | MS.gene058736:intron | 40.0% | |
| AAGGCAAACACCTAATCCAA+GGG | - | chr1.1:14945331-14945350 | MS.gene058736:intron | 40.0% | |
| AATCAGTTAACGGCCTCAAA+TGG | + | chr1.1:14945286-14945305 | None:intergenic | 40.0% | |
| AATGTGATGAACGAGAGAGT+TGG | - | chr1.1:14944737-14944756 | MS.gene058736:intron | 40.0% | |
| AGACAAGTCAGCAATCTAAC+AGG | + | chr1.1:14945104-14945123 | None:intergenic | 40.0% | |
| AGATTTGGAAAGACTCTGGA+GGG | - | chr1.1:14944334-14944353 | MS.gene058736:intron | 40.0% | |
| AGGGTCTGTCAAATATACCT+CGG | + | chr1.1:14944105-14944124 | None:intergenic | 40.0% | |
| AGTAGATCAACTTCCAGGAT+AGG | + | chr1.1:14945378-14945397 | None:intergenic | 40.0% | |
| ATGTGGCAGTTAATTGTGAG+AGG | + | chr1.1:14946205-14946224 | None:intergenic | 40.0% | |
| CACAAGGTTCTGTGAATTAC+AGG | - | chr1.1:14945686-14945705 | MS.gene058736:intron | 40.0% | |
| CAGAGTCTTTCCAAATCTCA+GGG | + | chr1.1:14944332-14944351 | None:intergenic | 40.0% | |
| CATCTAGTAGATCAACTTCC+AGG | + | chr1.1:14945383-14945402 | None:intergenic | 40.0% | |
| CTAAGTCAATGACAACCCAA+AGG | + | chr1.1:14945157-14945176 | None:intergenic | 40.0% | |
| CTGTAATTCACAGAACCTTG+TGG | + | chr1.1:14945688-14945707 | None:intergenic | 40.0% | |
| CTTTCAAGACTCACATAAGC+TGG | + | chr1.1:14944056-14944075 | None:intergenic | 40.0% | |
| GTAGATCAACTTCCAGGATA+GGG | + | chr1.1:14945377-14945396 | None:intergenic | 40.0% | |
| GTGAGAGGAACGTGATTATA+GGG | + | chr1.1:14946190-14946209 | None:intergenic | 40.0% | |
| GTTGTATGTCTATGTAGGAG+AGG | - | chr1.1:14944776-14944795 | MS.gene058736:intron | 40.0% | |
| TAGATCAACTTCCAGGATAG+GGG | + | chr1.1:14945376-14945395 | None:intergenic | 40.0% | |
| TAGATTCATTACGAGACCAC+TGG | - | chr1.1:14944306-14944325 | MS.gene058736:intron | 40.0% | |
| TGAAAACTCTGCCAATCCAA+AGG | - | chr1.1:14944205-14944224 | MS.gene058736:intron | 40.0% | |
| TGAGAGGAACGTGATTATAG+GGG | + | chr1.1:14946189-14946208 | None:intergenic | 40.0% | |
| TGCCTTGAAAGAAGGTTTAC+TGG | - | chr1.1:14945746-14945765 | MS.gene058736:intron | 40.0% | |
| TGTATGTCTATGTAGGAGAG+GGG | - | chr1.1:14944778-14944797 | MS.gene058736:intron | 40.0% | |
| TGTGAGAGGAACGTGATTAT+AGG | + | chr1.1:14946191-14946210 | None:intergenic | 40.0% | |
| TTCAGAACTGCACTTTCAGA+TGG | + | chr1.1:14944538-14944557 | None:intergenic | 40.0% | |
| TTCTACACCATACACCTAGA+GGG | + | chr1.1:14944515-14944534 | None:intergenic | 40.0% | |
| TTGCAGATGGGAATTTCATC+AGG | - | chr1.1:14946348-14946367 | MS.gene058736:CDS | 40.0% | |
| ! | ATGAGCTTTCCTGCATTTTC+TGG | + | chr1.1:14946411-14946430 | None:intergenic | 40.0% |
| ! | GTTTGTTAGGACACAGGTTT+GGG | + | chr1.1:14946283-14946302 | None:intergenic | 40.0% |
| ! | TTAGACATCTGCAGGTGTTT+TGG | - | chr1.1:14945065-14945084 | MS.gene058736:CDS | 40.0% |
| !! | AGTTTGTTAGGACACAGGTT+TGG | + | chr1.1:14946284-14946303 | None:intergenic | 40.0% |
| !! | TCTGAAAGTGCAGTTCTGAA+TGG | - | chr1.1:14944538-14944557 | MS.gene058736:intron | 40.0% |
| !! | TTTCTGAGGAGCTTTTGCTA+CGG | + | chr1.1:14946082-14946101 | None:intergenic | 40.0% |
| !!! | TAATGTTGCTTTTCCCCTCT+AGG | - | chr1.1:14944498-14944517 | MS.gene058736:intron | 40.0% |
| AAAAGCTGCACTTAGCCCTT+TGG | - | chr1.1:14945138-14945157 | MS.gene058736:intron | 45.0% | |
| AAAGCTGCACTTAGCCCTTT+GGG | - | chr1.1:14945139-14945158 | MS.gene058736:intron | 45.0% | |
| AAGCTGCTTGCCTTGAAAGA+AGG | - | chr1.1:14945738-14945757 | MS.gene058736:intron | 45.0% | |
| ACACCATCAATTCCTTTGGC+AGG | + | chr1.1:14944125-14944144 | None:intergenic | 45.0% | |
| AGATCAACTTCCAGGATAGG+GGG | + | chr1.1:14945375-14945394 | None:intergenic | 45.0% | |
| CACCATCAATTCCTTTGGCA+GGG | + | chr1.1:14944124-14944143 | None:intergenic | 45.0% | |
| CAGCACTATTAGACATCTGC+AGG | - | chr1.1:14945057-14945076 | MS.gene058736:CDS | 45.0% | |
| CCAGAGTCTTTCCAAATCTC+AGG | + | chr1.1:14944333-14944352 | None:intergenic | 45.0% | |
| CCTGAGATTTGGAAAGACTC+TGG | - | chr1.1:14944330-14944349 | MS.gene058736:intron | 45.0% | |
| GAGAGGAACGTGATTATAGG+GGG | + | chr1.1:14946188-14946207 | None:intergenic | 45.0% | |
| GAGATTTGGAAAGACTCTGG+AGG | - | chr1.1:14944333-14944352 | MS.gene058736:intron | 45.0% | |
| GGAGAAAAACCCAGAGATCA+AGG | - | chr1.1:14944424-14944443 | MS.gene058736:intron | 45.0% | |
| GTTCTACACCATACACCTAG+AGG | + | chr1.1:14944516-14944535 | None:intergenic | 45.0% | |
| TATTTGACAGACCCTGCCAA+AGG | - | chr1.1:14944110-14944129 | MS.gene058736:intron | 45.0% | |
| TCTACACCATACACCTAGAG+GGG | + | chr1.1:14944514-14944533 | None:intergenic | 45.0% | |
| ! | ATCTCTGGGTTTTTCTCCTG+AGG | + | chr1.1:14944422-14944441 | None:intergenic | 45.0% |
| ! | TAGGACACAGGTTTGGGTTA+GGG | + | chr1.1:14946277-14946296 | None:intergenic | 45.0% |
| ! | TTAGGACACAGGTTTGGGTT+AGG | + | chr1.1:14946278-14946297 | None:intergenic | 45.0% |
| ! | TTTTGCTACGGGGTTACAGT+GGG | + | chr1.1:14946070-14946089 | None:intergenic | 45.0% |
| !! | AGAGTTGATGCTTTGGTTGC+AGG | - | chr1.1:14944357-14944376 | MS.gene058736:intron | 45.0% |
| !! | GAAAGTGCAGTTCTGAATGG+AGG | - | chr1.1:14944541-14944560 | MS.gene058736:intron | 45.0% |
| !! | GAGTTGATGCTTTGGTTGCA+GGG | - | chr1.1:14944358-14944377 | MS.gene058736:intron | 45.0% |
| !! | GATTTTGGAGGGGAGAGTTT+TGG | + | chr1.1:14944919-14944938 | None:intergenic | 45.0% |
| !! | TTCTGAGGAGCTTTTGCTAC+GGG | + | chr1.1:14946081-14946100 | None:intergenic | 45.0% |
| !!! | TTATTATTATTTTTTTTTGA+AGG | - | chr1.1:14945857-14945876 | MS.gene058736:intron | 5.0% |
| AGGGCCTAAGCCCAACAAAT+GGG | + | chr1.1:14946258-14946277 | None:intergenic | 50.0% | |
| ATGGGCTTGACAGCGAAGTT+AGG | + | chr1.1:14946240-14946259 | None:intergenic | 50.0% | |
| CGCTGTCAAGCCCATTTGTT+GGG | - | chr1.1:14946245-14946264 | MS.gene058736:CDS | 50.0% | |
| GACCCTGCCAAAGGAATTGA+TGG | - | chr1.1:14944119-14944138 | MS.gene058736:intron | 50.0% | |
| GATGCTTTGGTTGCAGGGAT+AGG | - | chr1.1:14944363-14944382 | MS.gene058736:intron | 50.0% | |
| GGAACGTGATTATAGGGGGA+AGG | + | chr1.1:14946184-14946203 | None:intergenic | 50.0% | |
| GGGAAGAGACCAGAAAATGC+AGG | - | chr1.1:14946399-14946418 | MS.gene058736:CDS | 50.0% | |
| GGGGAACAGTAACAGGTGTT+GGG | - | chr1.1:14944391-14944410 | MS.gene058736:intron | 50.0% | |
| TAGGGCCTAAGCCCAACAAA+TGG | + | chr1.1:14946259-14946278 | None:intergenic | 50.0% | |
| TCGCTGTCAAGCCCATTTGT+TGG | - | chr1.1:14946244-14946263 | MS.gene058736:CDS | 50.0% | |
| TGGTTGCAGGGATAGGAACT+GGG | - | chr1.1:14944370-14944389 | MS.gene058736:intron | 50.0% | |
| TTGGTTGCAGGGATAGGAAC+TGG | - | chr1.1:14944369-14944388 | MS.gene058736:intron | 50.0% | |
| TTTCCAAATCTCAGGGCCAG+TGG | + | chr1.1:14944325-14944344 | None:intergenic | 50.0% | |
| TTTGCTACGGGGTTACAGTG+GGG | + | chr1.1:14946069-14946088 | None:intergenic | 50.0% | |
| ! | CAAGCCCATTTGTTGGGCTT+AGG | - | chr1.1:14946251-14946270 | MS.gene058736:CDS | 50.0% |
| ! | CTTTTGCTACGGGGTTACAG+TGG | + | chr1.1:14946071-14946090 | None:intergenic | 50.0% |
| ! | GCTTTTCCCCTCTAGGTGTA+TGG | - | chr1.1:14944505-14944524 | MS.gene058736:intron | 50.0% |
| ! | GTTCTGAATGGAGGAAAGCC+AGG | - | chr1.1:14944550-14944569 | MS.gene058736:intron | 50.0% |
| ! | TCTGAGGAGCTTTTGCTACG+GGG | + | chr1.1:14946080-14946099 | None:intergenic | 50.0% |
| !! | TGGAGGGAGAGTTGATGCTT+TGG | - | chr1.1:14944350-14944369 | MS.gene058736:intron | 50.0% |
| !!! | TCTGCAGGTGTTTTGGCATC+TGG | - | chr1.1:14945072-14945091 | MS.gene058736:CDS | 50.0% |
| AGACCACTGGCCCTGAGATT+TGG | - | chr1.1:14944319-14944338 | MS.gene058736:intron | 55.0% | |
| CTAATCCAAGGGATCGGTGC+TGG | - | chr1.1:14945342-14945361 | MS.gene058736:intron | 55.0% | |
| GGAACTGGGGGAACAGTAAC+AGG | - | chr1.1:14944384-14944403 | MS.gene058736:intron | 55.0% | |
| GGGGGAACAGTAACAGGTGT+TGG | - | chr1.1:14944390-14944409 | MS.gene058736:intron | 55.0% | |
| GGTTGCAGGGATAGGAACTG+GGG | - | chr1.1:14944371-14944390 | MS.gene058736:intron | 55.0% | |
| GTTGCAGGGATAGGAACTGG+GGG | - | chr1.1:14944372-14944391 | MS.gene058736:intron | 55.0% | |
| !! | CAGCACCGATCCCTTGGATT+AGG | + | chr1.1:14945344-14945363 | None:intergenic | 55.0% |
| !! | CAGGTGTTGGGAAGTTCCTC+AGG | - | chr1.1:14944403-14944422 | MS.gene058736:intron | 55.0% |
| !! | TGGTGTCGTTCCCCCTATCC+TGG | - | chr1.1:14945362-14945381 | MS.gene058736:intron | 60.0% |
| ACTGCGAGCTTTCGGAGCCG+AGG | - | chr1.1:14944085-14944104 | MS.gene058736:intron | 65.0% | |
| !! | CGACACCAGCACCGATCCCT+TGG | + | chr1.1:14945350-14945369 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14944023 | 14946434 | 14944023 | ID=MS.gene058736 |
| chr1.1 | mRNA | 14944023 | 14946434 | 14944023 | ID=MS.gene058736.t1;Parent=MS.gene058736 |
| chr1.1 | exon | 14946231 | 14946434 | 14946231 | ID=MS.gene058736.t1.exon1;Parent=MS.gene058736.t1 |
| chr1.1 | CDS | 14946231 | 14946434 | 14946231 | ID=cds.MS.gene058736.t1;Parent=MS.gene058736.t1 |
| chr1.1 | exon | 14946050 | 14946148 | 14946050 | ID=MS.gene058736.t1.exon2;Parent=MS.gene058736.t1 |
| chr1.1 | CDS | 14946050 | 14946148 | 14946050 | ID=cds.MS.gene058736.t1;Parent=MS.gene058736.t1 |
| chr1.1 | exon | 14945886 | 14945937 | 14945886 | ID=MS.gene058736.t1.exon3;Parent=MS.gene058736.t1 |
| chr1.1 | CDS | 14945886 | 14945937 | 14945886 | ID=cds.MS.gene058736.t1;Parent=MS.gene058736.t1 |
| chr1.1 | exon | 14945044 | 14945123 | 14945044 | ID=MS.gene058736.t1.exon4;Parent=MS.gene058736.t1 |
| chr1.1 | CDS | 14945044 | 14945123 | 14945044 | ID=cds.MS.gene058736.t1;Parent=MS.gene058736.t1 |
| chr1.1 | exon | 14944690 | 14944749 | 14944690 | ID=MS.gene058736.t1.exon5;Parent=MS.gene058736.t1 |
| chr1.1 | CDS | 14944690 | 14944749 | 14944690 | ID=cds.MS.gene058736.t1;Parent=MS.gene058736.t1 |
| chr1.1 | exon | 14944023 | 14944103 | 14944023 | ID=MS.gene058736.t1.exon6;Parent=MS.gene058736.t1 |
| chr1.1 | CDS | 14944023 | 14944103 | 14944023 | ID=cds.MS.gene058736.t1;Parent=MS.gene058736.t1 |
| Gene Sequence |
| Protein sequence |
