Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058738.t1 | XP_003591035.2 | 94.8 | 115 | 6 | 0 | 1 | 115 | 133 | 247 | 6.40E-56 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058738.t1 | P38076 | 73.0 | 115 | 31 | 0 | 1 | 115 | 135 | 249 | 9.3e-48 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058738.t1 | G7I7F0 | 94.8 | 115 | 6 | 0 | 1 | 115 | 133 | 247 | 4.6e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058738 | MS.gene058739 | 0.838483 | 2.80E-57 | -1.69E-46 |
| MS.gene058738 | MS.gene071623 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene058738 | MS.gene27776 | 0.804558 | 2.04E-49 | -1.69E-46 |
| MS.gene058738 | MS.gene44031 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene058738 | MS.gene69912 | 0.825875 | 3.69E-54 | -1.69E-46 |
| MS.gene058738 | MS.gene70798 | 0.801167 | 1.02E-48 | -1.69E-46 |
| MS.gene058738 | MS.gene78329 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene058738 | MS.gene97211 | 0.818688 | 1.72E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058738.t1 | MTR_1g081620 | 94.783 | 115 | 6 | 0 | 1 | 115 | 133 | 247 | 1.60e-65 | 201 |
| MS.gene058738.t1 | MTR_1g081625 | 85.217 | 115 | 17 | 0 | 1 | 115 | 133 | 247 | 6.61e-59 | 184 |
| MS.gene058738.t1 | MTR_1g081640 | 81.739 | 115 | 21 | 0 | 1 | 115 | 133 | 247 | 1.61e-56 | 177 |
| MS.gene058738.t1 | MTR_4g087490 | 64.912 | 114 | 40 | 0 | 1 | 114 | 173 | 286 | 5.08e-51 | 165 |
| MS.gene058738.t1 | MTR_1g081610 | 76.522 | 115 | 27 | 0 | 1 | 115 | 134 | 248 | 5.09e-50 | 161 |
| MS.gene058738.t1 | MTR_4g087510 | 63.158 | 114 | 42 | 0 | 1 | 114 | 172 | 285 | 7.17e-49 | 159 |
| MS.gene058738.t1 | MTR_1g103690 | 72.174 | 115 | 32 | 0 | 1 | 115 | 134 | 248 | 4.21e-46 | 151 |
| MS.gene058738.t1 | MTR_5g006340 | 71.304 | 115 | 33 | 0 | 1 | 115 | 134 | 248 | 5.81e-46 | 150 |
| MS.gene058738.t1 | MTR_7g078070 | 61.739 | 115 | 44 | 0 | 1 | 115 | 94 | 208 | 2.76e-41 | 137 |
| MS.gene058738.t1 | MTR_7g078070 | 61.739 | 115 | 44 | 0 | 1 | 115 | 127 | 241 | 7.32e-41 | 137 |
| MS.gene058738.t1 | MTR_7g078070 | 61.739 | 115 | 44 | 0 | 1 | 115 | 187 | 301 | 9.19e-41 | 139 |
| MS.gene058738.t1 | MTR_4g087520 | 63.158 | 114 | 42 | 0 | 1 | 114 | 79 | 192 | 1.29e-40 | 135 |
| MS.gene058738.t1 | MTR_7g087110 | 52.174 | 115 | 45 | 1 | 1 | 115 | 191 | 295 | 1.67e-28 | 106 |
| MS.gene058738.t1 | MTR_5g095670 | 56.944 | 72 | 31 | 0 | 13 | 84 | 221 | 292 | 2.74e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058738.t1 | AT4G14880 | 71.304 | 115 | 33 | 0 | 1 | 115 | 131 | 245 | 2.30e-48 | 157 |
| MS.gene058738.t1 | AT4G14880 | 71.304 | 115 | 33 | 0 | 1 | 115 | 131 | 245 | 2.30e-48 | 157 |
| MS.gene058738.t1 | AT4G14880 | 71.304 | 115 | 33 | 0 | 1 | 115 | 131 | 245 | 2.30e-48 | 157 |
| MS.gene058738.t1 | AT4G14880 | 71.304 | 115 | 33 | 0 | 1 | 115 | 131 | 245 | 2.30e-48 | 157 |
| MS.gene058738.t1 | AT4G14880 | 71.304 | 115 | 33 | 0 | 1 | 115 | 131 | 245 | 2.30e-48 | 157 |
| MS.gene058738.t1 | AT3G04940 | 66.087 | 115 | 39 | 0 | 1 | 115 | 134 | 248 | 5.94e-46 | 150 |
| MS.gene058738.t1 | AT3G04940 | 66.087 | 115 | 39 | 0 | 1 | 115 | 134 | 248 | 5.94e-46 | 150 |
| MS.gene058738.t1 | AT2G43750 | 71.053 | 114 | 33 | 0 | 1 | 114 | 201 | 314 | 1.56e-45 | 151 |
| MS.gene058738.t1 | AT2G43750 | 71.053 | 114 | 33 | 0 | 1 | 114 | 201 | 314 | 1.56e-45 | 151 |
| MS.gene058738.t1 | AT3G22460 | 61.739 | 115 | 24 | 1 | 1 | 115 | 79 | 173 | 2.89e-43 | 142 |
| MS.gene058738.t1 | AT5G28030 | 67.826 | 115 | 37 | 0 | 1 | 115 | 133 | 247 | 8.91e-42 | 138 |
| MS.gene058738.t1 | AT3G59760 | 67.544 | 114 | 37 | 0 | 1 | 114 | 239 | 352 | 1.68e-41 | 142 |
| MS.gene058738.t1 | AT5G28030 | 67.826 | 115 | 37 | 0 | 1 | 115 | 133 | 247 | 5.40e-41 | 138 |
| MS.gene058738.t1 | AT5G28030 | 67.826 | 115 | 37 | 0 | 1 | 115 | 133 | 247 | 5.40e-41 | 138 |
| MS.gene058738.t1 | AT5G28030 | 67.826 | 115 | 37 | 0 | 1 | 115 | 133 | 247 | 5.40e-41 | 138 |
| MS.gene058738.t1 | AT5G28030 | 67.826 | 115 | 37 | 0 | 1 | 115 | 133 | 247 | 5.40e-41 | 138 |
| MS.gene058738.t1 | AT3G59760 | 67.544 | 114 | 37 | 0 | 1 | 114 | 239 | 352 | 9.84e-41 | 139 |
| MS.gene058738.t1 | AT3G59760 | 67.544 | 114 | 37 | 0 | 1 | 114 | 239 | 352 | 1.08e-40 | 139 |
| MS.gene058738.t1 | AT5G28020 | 65.217 | 115 | 40 | 0 | 1 | 115 | 47 | 161 | 7.45e-39 | 130 |
| MS.gene058738.t1 | AT3G61440 | 58.261 | 115 | 48 | 0 | 1 | 115 | 54 | 168 | 1.30e-38 | 130 |
| MS.gene058738.t1 | AT3G61440 | 58.261 | 115 | 48 | 0 | 1 | 115 | 79 | 193 | 2.76e-38 | 130 |
| MS.gene058738.t1 | AT5G28020 | 65.217 | 115 | 40 | 0 | 1 | 115 | 133 | 247 | 3.05e-38 | 131 |
| MS.gene058738.t1 | AT5G28020 | 65.217 | 115 | 40 | 0 | 1 | 115 | 133 | 247 | 3.05e-38 | 131 |
| MS.gene058738.t1 | AT5G28020 | 65.217 | 115 | 40 | 0 | 1 | 115 | 133 | 247 | 3.05e-38 | 131 |
| MS.gene058738.t1 | AT5G28020 | 65.217 | 115 | 40 | 0 | 1 | 115 | 133 | 247 | 3.05e-38 | 131 |
| MS.gene058738.t1 | AT5G28020 | 65.217 | 115 | 40 | 0 | 1 | 115 | 133 | 247 | 3.05e-38 | 131 |
| MS.gene058738.t1 | AT3G61440 | 58.261 | 115 | 48 | 0 | 1 | 115 | 175 | 289 | 3.75e-38 | 131 |
| MS.gene058738.t1 | AT3G61440 | 58.261 | 115 | 48 | 0 | 1 | 115 | 175 | 289 | 1.08e-37 | 130 |
| MS.gene058738.t1 | AT3G03630 | 58.261 | 115 | 38 | 1 | 1 | 115 | 225 | 329 | 3.82e-29 | 108 |
| MS.gene058738.t1 | AT3G22460 | 81.818 | 55 | 10 | 0 | 1 | 55 | 134 | 188 | 1.88e-27 | 99.8 |
| MS.gene058738.t1 | AT1G55880 | 48.611 | 72 | 37 | 0 | 13 | 84 | 218 | 289 | 5.81e-20 | 83.2 |
| MS.gene058738.t1 | AT1G55880 | 48.611 | 72 | 37 | 0 | 13 | 84 | 218 | 289 | 7.81e-20 | 83.6 |
Find 39 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTTGCAGGGATAGGAAC+TGG | 0.301174 | 1.1:-14932143 | MS.gene058738:CDS |
| AGAGTTGATGCTTTGGTTGC+AGG | 0.314791 | 1.1:-14932155 | MS.gene058738:CDS |
| AGACCACTGGCCCTGAGATT+TGG | 0.324065 | 1.1:-14932193 | MS.gene058738:CDS |
| TGGAGGGAGAGTTGATGCTT+TGG | 0.358657 | 1.1:-14932162 | MS.gene058738:CDS |
| ACTATTCATACCTTGATCTC+TGG | 0.360280 | 1.1:+14932077 | None:intergenic |
| CCAGAGTCTTTCCAAATCTC+AGG | 0.373679 | 1.1:+14932182 | None:intergenic |
| CATCTAGTAGATCAACTTCC+AGG | 0.383555 | 1.1:+14931129 | None:intergenic |
| TGATTGAGCATATAACTATT+AGG | 0.407097 | 1.1:+14932333 | None:intergenic |
| CAGCACCGATCCCTTGGATT+AGG | 0.432171 | 1.1:+14931168 | None:intergenic |
| CTATTCATACCTTGATCTCT+GGG | 0.435238 | 1.1:+14932078 | None:intergenic |
| CGACACCAGCACCGATCCCT+TGG | 0.442965 | 1.1:+14931162 | None:intergenic |
| GAGTTGATGCTTTGGTTGCA+GGG | 0.455243 | 1.1:-14932154 | MS.gene058738:CDS |
| GTAGATCAACTTCCAGGATA+GGG | 0.464520 | 1.1:+14931135 | None:intergenic |
| TGTAAATAACACCTTTGGAT+TGG | 0.472231 | 1.1:+14932296 | None:intergenic |
| TCTACTAGATGAAGTTATTG+AGG | 0.479345 | 1.1:-14931117 | None:intergenic |
| TGGTTGCAGGGATAGGAACT+GGG | 0.484341 | 1.1:-14932142 | MS.gene058738:CDS |
| GGGGAACAGTAACAGGTGTT+GGG | 0.494810 | 1.1:-14932121 | MS.gene058738:CDS |
| GATGCTTTGGTTGCAGGGAT+AGG | 0.501960 | 1.1:-14932149 | MS.gene058738:CDS |
| AGTAGATCAACTTCCAGGAT+AGG | 0.502056 | 1.1:+14931134 | None:intergenic |
| TCTGAAAGTGCAGTTCTGAA+TGG | 0.514085 | 1.1:-14931972 | MS.gene058738:CDS |
| CTAATCCAAGGGATCGGTGC+TGG | 0.516701 | 1.1:-14931167 | MS.gene058738:CDS |
| TTCAGAACTGCACTTTCAGA+TGG | 0.538348 | 1.1:+14931975 | None:intergenic |
| CCTGAGATTTGGAAAGACTC+TGG | 0.544001 | 1.1:-14932182 | MS.gene058738:CDS |
| GTTCTGAATGGAGGAAAGCC+AGG | 0.546295 | 1.1:-14931960 | MS.gene058738:intron |
| TAGATTCATTACGAGACCAC+TGG | 0.548191 | 1.1:-14932206 | MS.gene058738:CDS |
| AAAGGCAAACACCTAATCCA+AGG | 0.576831 | 1.1:-14931179 | MS.gene058738:intron |
| TAGATCAACTTCCAGGATAG+GGG | 0.577360 | 1.1:+14931136 | None:intergenic |
| TTTCCAAATCTCAGGGCCAG+TGG | 0.596982 | 1.1:+14932190 | None:intergenic |
| AGATTTGGAAAGACTCTGGA+GGG | 0.598831 | 1.1:-14932178 | MS.gene058738:CDS |
| CAGAGTCTTTCCAAATCTCA+GGG | 0.601201 | 1.1:+14932183 | None:intergenic |
| TGAAAACTCTGCCAATCCAA+AGG | 0.611620 | 1.1:-14932307 | MS.gene058738:intron |
| GAGATTTGGAAAGACTCTGG+AGG | 0.616942 | 1.1:-14932179 | MS.gene058738:CDS |
| AAACACCTAATCCAAGGGAT+CGG | 0.628864 | 1.1:-14931173 | MS.gene058738:CDS |
| AGATCAACTTCCAGGATAGG+GGG | 0.642892 | 1.1:+14931137 | None:intergenic |
| AAGGCAAACACCTAATCCAA+GGG | 0.643306 | 1.1:-14931178 | MS.gene058738:CDS |
| AGGTGTTGGGAAGTTCCTCA+AGG | 0.665059 | 1.1:-14932108 | MS.gene058738:CDS |
| GAAAGTGCAGTTCTGAATGG+AGG | 0.666727 | 1.1:-14931969 | MS.gene058738:CDS |
| GGTTGCAGGGATAGGAACTG+GGG | 0.673121 | 1.1:-14932141 | MS.gene058738:CDS |
| GTTGCAGGGATAGGAACTGG+GGG | 0.729118 | 1.1:-14932140 | MS.gene058738:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAACGACAAAATTAAT+TGG | + | chr1.1:14931253-14931272 | None:intergenic | 20.0% |
| !! | TAGAATTGTTCTATCAAAAT+TGG | - | chr1.1:14931979-14931998 | MS.gene058738:CDS | 20.0% |
| !!! | ACAGTTCATATTTTCTAATT+TGG | - | chr1.1:14931202-14931221 | MS.gene058738:intron | 20.0% |
| !!! | TATTTTCTAATTTGGTTGTT+TGG | - | chr1.1:14931210-14931229 | MS.gene058738:intron | 20.0% |
| ! | ACATAGACATACAACAAATT+GGG | + | chr1.1:14931739-14931758 | None:intergenic | 25.0% |
| ! | TACATAGACATACAACAAAT+TGG | + | chr1.1:14931740-14931759 | None:intergenic | 25.0% |
| ! | TGATTGAGCATATAACTATT+AGG | + | chr1.1:14931148-14931167 | None:intergenic | 25.0% |
| ! | TGGAAAAATCAATCAGTTAA+CGG | + | chr1.1:14932265-14932284 | None:intergenic | 25.0% |
| ! | TGTGAATGTTATTGTATTCT+TGG | - | chr1.1:14931596-14931615 | MS.gene058738:intron | 25.0% |
| !! | AACCTTTTATGTTTGGATTT+TGG | + | chr1.1:14931902-14931921 | None:intergenic | 25.0% |
| !! | AGGTATAAACCTTTTATGTT+TGG | + | chr1.1:14931909-14931928 | None:intergenic | 25.0% |
| !! | TTTTATGTTTGGATTTTGGA+GGG | + | chr1.1:14931898-14931917 | None:intergenic | 25.0% |
| !!! | AATTTGTTGTATGTCTATGT+AGG | - | chr1.1:14931739-14931758 | MS.gene058738:intron | 25.0% |
| !!! | TGATTTTGAGTATTTCTTTC+TGG | - | chr1.1:14931549-14931568 | MS.gene058738:intron | 25.0% |
| CTCAAAATCATAAAATCACC+TGG | + | chr1.1:14931539-14931558 | None:intergenic | 30.0% | |
| CTCCAAAATCCAAACATAAA+AGG | - | chr1.1:14931897-14931916 | MS.gene058738:intron | 30.0% | |
| TATTCAAGCATAACCATTTG+AGG | - | chr1.1:14932239-14932258 | MS.gene058738:intron | 30.0% | |
| TCCATTTGAACACATTTCAA+AGG | - | chr1.1:14932281-14932300 | MS.gene058738:intron | 30.0% | |
| TCTAATGTTTCTCATGATAG+TGG | + | chr1.1:14931963-14931982 | None:intergenic | 30.0% | |
| TGAACTGTAAATAACACCTT+TGG | + | chr1.1:14931190-14931209 | None:intergenic | 30.0% | |
| TGTAAATAACACCTTTGGAT+TGG | + | chr1.1:14931185-14931204 | None:intergenic | 30.0% | |
| TTCTAATTTGGTTGTTTGGT+GGG | - | chr1.1:14931214-14931233 | MS.gene058738:intron | 30.0% | |
| TTGTTCTATCAAAATTGGCT+TGG | - | chr1.1:14931984-14932003 | MS.gene058738:CDS | 30.0% | |
| TTTCTAATTTGGTTGTTTGG+TGG | - | chr1.1:14931213-14931232 | MS.gene058738:intron | 30.0% | |
| ! | CTTTTATGTTTGGATTTTGG+AGG | + | chr1.1:14931899-14931918 | None:intergenic | 30.0% |
| !! | TTTATGTTTGGATTTTGGAG+GGG | + | chr1.1:14931897-14931916 | None:intergenic | 30.0% |
| ACATACAACAAATTGGGACT+CGG | + | chr1.1:14931733-14931752 | None:intergenic | 35.0% | |
| ACTATTCATACCTTGATCTC+TGG | + | chr1.1:14931404-14931423 | None:intergenic | 35.0% | |
| ATACCTTAAACAGTCCTTAG+AGG | + | chr1.1:14931935-14931954 | None:intergenic | 35.0% | |
| CTATTCATACCTTGATCTCT+GGG | + | chr1.1:14931403-14931422 | None:intergenic | 35.0% | |
| TAAACAGTCCTTAGAGGAAA+AGG | + | chr1.1:14931929-14931948 | None:intergenic | 35.0% | |
| TAAGTCAATGACAACCCAAA+GGG | + | chr1.1:14932125-14932144 | None:intergenic | 35.0% | |
| TTGGAGAAAACTTGAAATGC+AGG | - | chr1.1:14932003-14932022 | MS.gene058738:intron | 35.0% | |
| TTGTATGTCTATGTAGGAGA+GGG | - | chr1.1:14931745-14931764 | MS.gene058738:intron | 35.0% | |
| ! | GGTTTATACCTTTTCCTCTA+AGG | - | chr1.1:14931918-14931937 | MS.gene058738:intron | 35.0% |
| ! | TTTCCTCTAAGGACTGTTTA+AGG | - | chr1.1:14931929-14931948 | MS.gene058738:intron | 35.0% |
| !! | GCCTTTGAAATGTGTTCAAA+TGG | + | chr1.1:14932285-14932304 | None:intergenic | 35.0% |
| !!! | TTGCTGACTTGTCTGTTTTT+TGG | - | chr1.1:14932079-14932098 | MS.gene058738:intron | 35.0% |
| AAACACCTAATCCAAGGGAT+CGG | - | chr1.1:14932305-14932324 | MS.gene058738:intron | 40.0% | |
| AAAGGCAAACACCTAATCCA+AGG | - | chr1.1:14932299-14932318 | MS.gene058738:intron | 40.0% | |
| AAGGCAAACACCTAATCCAA+GGG | - | chr1.1:14932300-14932319 | MS.gene058738:intron | 40.0% | |
| AATCAGTTAACGGCCTCAAA+TGG | + | chr1.1:14932255-14932274 | None:intergenic | 40.0% | |
| AATGTGATGAACGAGAGAGT+TGG | - | chr1.1:14931705-14931724 | MS.gene058738:intron | 40.0% | |
| AGACAAGTCAGCAATCTAAC+AGG | + | chr1.1:14932073-14932092 | None:intergenic | 40.0% | |
| AGATTTGGAAAGACTCTGGA+GGG | - | chr1.1:14931300-14931319 | MS.gene058738:intron | 40.0% | |
| AGTAGATCAACTTCCAGGAT+AGG | + | chr1.1:14932347-14932366 | None:intergenic | 40.0% | |
| CAGAGTCTTTCCAAATCTCA+GGG | + | chr1.1:14931298-14931317 | None:intergenic | 40.0% | |
| CATCTAGTAGATCAACTTCC+AGG | + | chr1.1:14932352-14932371 | None:intergenic | 40.0% | |
| CTAAGTCAATGACAACCCAA+AGG | + | chr1.1:14932126-14932145 | None:intergenic | 40.0% | |
| GTAGATCAACTTCCAGGATA+GGG | + | chr1.1:14932346-14932365 | None:intergenic | 40.0% | |
| GTTGTATGTCTATGTAGGAG+AGG | - | chr1.1:14931744-14931763 | MS.gene058738:intron | 40.0% | |
| TAGATCAACTTCCAGGATAG+GGG | + | chr1.1:14932345-14932364 | None:intergenic | 40.0% | |
| TAGATTCATTACGAGACCAC+TGG | - | chr1.1:14931272-14931291 | MS.gene058738:intron | 40.0% | |
| TGAAAACTCTGCCAATCCAA+AGG | - | chr1.1:14931171-14931190 | MS.gene058738:CDS | 40.0% | |
| TGTATGTCTATGTAGGAGAG+GGG | - | chr1.1:14931746-14931765 | MS.gene058738:intron | 40.0% | |
| TTCAGAACTGCACTTTCAGA+TGG | + | chr1.1:14931506-14931525 | None:intergenic | 40.0% | |
| TTCTACACCATACACCTAGA+GGG | + | chr1.1:14931483-14931502 | None:intergenic | 40.0% | |
| ! | TTAGACATCTGCAGGTGTTT+TGG | - | chr1.1:14932034-14932053 | MS.gene058738:intron | 40.0% |
| !! | ATTTTGGAGGGGAGAGTTTT+TGG | + | chr1.1:14931886-14931905 | None:intergenic | 40.0% |
| !! | TCTGAAAGTGCAGTTCTGAA+TGG | - | chr1.1:14931506-14931525 | MS.gene058738:intron | 40.0% |
| !!! | TAATGTTGCTTTTCCCCTCT+AGG | - | chr1.1:14931466-14931485 | MS.gene058738:intron | 40.0% |
| AAAAGCTGCACTTAGCCCTT+TGG | - | chr1.1:14932107-14932126 | MS.gene058738:CDS | 45.0% | |
| AAAGCTGCACTTAGCCCTTT+GGG | - | chr1.1:14932108-14932127 | MS.gene058738:CDS | 45.0% | |
| AGATCAACTTCCAGGATAGG+GGG | + | chr1.1:14932344-14932363 | None:intergenic | 45.0% | |
| CAGCACTATTAGACATCTGC+AGG | - | chr1.1:14932026-14932045 | MS.gene058738:intron | 45.0% | |
| CCAGAGTCTTTCCAAATCTC+AGG | + | chr1.1:14931299-14931318 | None:intergenic | 45.0% | |
| CCTGAGATTTGGAAAGACTC+TGG | - | chr1.1:14931296-14931315 | MS.gene058738:intron | 45.0% | |
| GAGATTTGGAAAGACTCTGG+AGG | - | chr1.1:14931299-14931318 | MS.gene058738:intron | 45.0% | |
| GGAGAAAAACCCAGAGATCA+AGG | - | chr1.1:14931391-14931410 | MS.gene058738:intron | 45.0% | |
| GTTCTACACCATACACCTAG+AGG | + | chr1.1:14931484-14931503 | None:intergenic | 45.0% | |
| TCTACACCATACACCTAGAG+GGG | + | chr1.1:14931482-14931501 | None:intergenic | 45.0% | |
| ! | TCTCTGGGTTTTTCTCCTTG+AGG | + | chr1.1:14931388-14931407 | None:intergenic | 45.0% |
| !! | AGAGTTGATGCTTTGGTTGC+AGG | - | chr1.1:14931323-14931342 | MS.gene058738:intron | 45.0% |
| !! | GAAAGTGCAGTTCTGAATGG+AGG | - | chr1.1:14931509-14931528 | MS.gene058738:intron | 45.0% |
| !! | GAGTTGATGCTTTGGTTGCA+GGG | - | chr1.1:14931324-14931343 | MS.gene058738:intron | 45.0% |
| GATGCTTTGGTTGCAGGGAT+AGG | - | chr1.1:14931329-14931348 | MS.gene058738:intron | 50.0% | |
| GGGGAACAGTAACAGGTGTT+GGG | - | chr1.1:14931357-14931376 | MS.gene058738:intron | 50.0% | |
| TGGTTGCAGGGATAGGAACT+GGG | - | chr1.1:14931336-14931355 | MS.gene058738:intron | 50.0% | |
| TTGGTTGCAGGGATAGGAAC+TGG | - | chr1.1:14931335-14931354 | MS.gene058738:intron | 50.0% | |
| TTTCCAAATCTCAGGGCCAG+TGG | + | chr1.1:14931291-14931310 | None:intergenic | 50.0% | |
| ! | GCTTTTCCCCTCTAGGTGTA+TGG | - | chr1.1:14931473-14931492 | MS.gene058738:intron | 50.0% |
| ! | GTTCTGAATGGAGGAAAGCC+AGG | - | chr1.1:14931518-14931537 | MS.gene058738:intron | 50.0% |
| !! | AGGTGTTGGGAAGTTCCTCA+AGG | - | chr1.1:14931370-14931389 | MS.gene058738:intron | 50.0% |
| !! | TGGAGGGAGAGTTGATGCTT+TGG | - | chr1.1:14931316-14931335 | MS.gene058738:intron | 50.0% |
| !!! | TCTGCAGGTGTTTTGGCATC+TGG | - | chr1.1:14932041-14932060 | MS.gene058738:intron | 50.0% |
| AGACCACTGGCCCTGAGATT+TGG | - | chr1.1:14931285-14931304 | MS.gene058738:intron | 55.0% | |
| CTAATCCAAGGGATCGGTGC+TGG | - | chr1.1:14932311-14932330 | MS.gene058738:CDS | 55.0% | |
| GGAACTGGGGGAACAGTAAC+AGG | - | chr1.1:14931350-14931369 | MS.gene058738:intron | 55.0% | |
| GGGGGAACAGTAACAGGTGT+TGG | - | chr1.1:14931356-14931375 | MS.gene058738:intron | 55.0% | |
| GGTTGCAGGGATAGGAACTG+GGG | - | chr1.1:14931337-14931356 | MS.gene058738:intron | 55.0% | |
| GTTGCAGGGATAGGAACTGG+GGG | - | chr1.1:14931338-14931357 | MS.gene058738:intron | 55.0% | |
| !! | CAGCACCGATCCCTTGGATT+AGG | + | chr1.1:14932313-14932332 | None:intergenic | 55.0% |
| !! | TGGTGTCGTTCCCCCTATCC+TGG | - | chr1.1:14932331-14932350 | MS.gene058738:CDS | 60.0% |
| !! | CGACACCAGCACCGATCCCT+TGG | + | chr1.1:14932319-14932338 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14931118 | 14932382 | 14931118 | ID=MS.gene058738 |
| chr1.1 | mRNA | 14931118 | 14932382 | 14931118 | ID=MS.gene058738.t1;Parent=MS.gene058738 |
| chr1.1 | exon | 14932308 | 14932382 | 14932308 | ID=MS.gene058738.t1.exon1;Parent=MS.gene058738.t1 |
| chr1.1 | CDS | 14932308 | 14932382 | 14932308 | ID=cds.MS.gene058738.t1;Parent=MS.gene058738.t1 |
| chr1.1 | exon | 14932088 | 14932225 | 14932088 | ID=MS.gene058738.t1.exon2;Parent=MS.gene058738.t1 |
| chr1.1 | CDS | 14932088 | 14932225 | 14932088 | ID=cds.MS.gene058738.t1;Parent=MS.gene058738.t1 |
| chr1.1 | exon | 14931961 | 14932012 | 14931961 | ID=MS.gene058738.t1.exon3;Parent=MS.gene058738.t1 |
| chr1.1 | CDS | 14931961 | 14932012 | 14931961 | ID=cds.MS.gene058738.t1;Parent=MS.gene058738.t1 |
| chr1.1 | exon | 14931118 | 14931197 | 14931118 | ID=MS.gene058738.t1.exon4;Parent=MS.gene058738.t1 |
| chr1.1 | CDS | 14931118 | 14931197 | 14931118 | ID=cds.MS.gene058738.t1;Parent=MS.gene058738.t1 |
| Gene Sequence |
| Protein sequence |