AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44515

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44515.t1 MTR_4g095022 75.935 428 98 3 1 426 1 425 0.0 653
MS.gene44515.t1 MTR_4g095042 72.209 421 106 8 1 417 1 414 0.0 585
MS.gene44515.t1 MTR_4g095012 72.947 414 105 7 1 410 1 411 0.0 584
MS.gene44515.t1 MTR_4g095032 67.866 417 108 3 1 417 1 391 0.0 563
MS.gene44515.t1 MTR_4g095018 70.297 404 115 3 3 405 9 408 0.0 556
MS.gene44515.t1 MTR_4g095045 61.176 255 78 3 175 429 1 234 2.35e-93 295
MS.gene44515.t1 MTR_1g100110 32.861 423 239 13 30 434 42 437 6.27e-54 192
MS.gene44515.t1 MTR_6g048090 33.724 427 235 15 30 434 27 427 4.33e-52 187
MS.gene44515.t1 MTR_4g061833 31.057 454 260 12 7 434 9 435 1.73e-42 160
MS.gene44515.t1 MTR_4g061930 31.057 454 260 12 7 434 9 435 1.73e-42 160
MS.gene44515.t1 MTR_2g080220 32.282 412 244 12 26 422 27 418 5.52e-41 156
MS.gene44515.t1 MTR_7g078220 31.172 401 241 15 10 395 9 389 8.29e-41 151
MS.gene44515.t1 MTR_8g467150 30.361 415 241 11 30 432 33 411 2.40e-40 154
MS.gene44515.t1 MTR_4g109010 35.890 326 184 10 80 395 105 415 1.61e-39 152
MS.gene44515.t1 MTR_2g096160 33.813 417 209 19 7 395 15 392 2.94e-39 151
MS.gene44515.t1 MTR_8g037700 30.789 380 230 14 29 395 62 421 4.27e-36 142
MS.gene44515.t1 MTR_2g030310 27.253 466 273 16 8 435 10 447 1.96e-29 122
MS.gene44515.t1 MTR_2g030310 27.253 466 273 16 8 435 10 447 2.50e-29 121
MS.gene44515.t1 MTR_4g061833 31.126 302 177 7 146 434 1 284 7.22e-28 117
MS.gene44515.t1 MTR_4g052290 28.027 446 261 23 8 410 13 441 4.95e-24 105
MS.gene44515.t1 MTR_5g047120 28.211 436 263 20 33 432 40 461 1.72e-23 103
MS.gene44515.t1 MTR_7g115300 26.415 424 238 18 7 395 21 405 3.60e-23 103
MS.gene44515.t1 MTR_4g111925 25.721 416 247 14 23 400 29 420 9.26e-23 101
MS.gene44515.t1 MTR_7g073660 25.721 416 247 14 23 400 29 420 1.67e-22 101
MS.gene44515.t1 MTR_1g080740 26.396 394 237 16 30 395 27 395 4.32e-22 99.8
MS.gene44515.t1 MTR_5g047110 27.088 443 258 23 34 434 36 455 7.43e-22 99.0
MS.gene44515.t1 MTR_5g047060 27.381 420 244 23 34 415 36 432 2.44e-21 97.4
MS.gene44515.t1 MTR_6g015805 24.635 479 299 20 3 434 5 468 3.28e-19 90.9
MS.gene44515.t1 MTR_7g015390 25.180 417 261 18 21 395 23 430 3.12e-18 87.8
MS.gene44515.t1 MTR_7g015670 27.139 409 232 19 34 395 40 429 4.59e-18 87.4
MS.gene44515.t1 MTR_1g040077 26.225 408 200 19 7 395 14 339 2.32e-17 84.7
MS.gene44515.t1 MTR_1g040073 26.098 410 198 19 7 395 14 339 2.80e-17 84.7
MS.gene44515.t1 MTR_7g015280 25.427 468 265 24 23 435 27 465 4.36e-17 84.3
MS.gene44515.t1 MTR_6g015795 23.832 428 278 17 3 395 5 419 5.75e-17 84.0
MS.gene44515.t1 MTR_7g015310 25.577 477 278 22 12 433 21 475 4.11e-16 81.3
MS.gene44515.t1 MTR_7g015420 25.658 456 288 22 23 435 27 474 2.26e-15 79.3
MS.gene44515.t1 MTR_7g015230 25.435 460 282 22 30 436 37 488 2.81e-15 79.0
MS.gene44515.t1 MTR_7g015620 25.265 471 269 24 26 435 26 474 3.15e-14 75.5
MS.gene44515.t1 MTR_7g015320 25.245 408 251 20 34 395 38 437 1.02e-13 73.9
MS.gene44515.t1 MTR_7g015510 26.253 419 258 23 23 401 29 436 3.21e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44515.t1 AT2G23200 33.666 401 225 10 26 416 33 402 1.96e-54 194
MS.gene44515.t1 AT5G24010 35.177 452 228 17 13 438 18 430 9.71e-52 187
MS.gene44515.t1 AT5G61350 33.850 387 222 14 30 400 32 400 1.34e-46 172
MS.gene44515.t1 AT4G00300 31.795 390 222 15 30 395 29 398 6.58e-43 157
MS.gene44515.t1 AT5G59700 32.353 442 254 16 9 433 8 421 5.11e-42 159
MS.gene44515.t1 AT5G54380 30.820 451 266 14 7 435 8 434 1.46e-41 157
MS.gene44515.t1 AT2G21480 29.224 438 261 15 22 434 47 460 6.15e-39 150
MS.gene44515.t1 AT4G39110 30.729 384 235 13 25 395 51 416 5.45e-38 147
MS.gene44515.t1 AT2G39360 30.709 381 220 16 30 395 29 380 1.71e-36 143
MS.gene44515.t1 AT3G46290 31.368 424 244 16 25 430 24 418 3.00e-36 142
MS.gene44515.t1 AT1G30570 26.866 469 266 19 7 434 16 448 2.17e-33 134
MS.gene44515.t1 AT5G39000 26.829 492 274 21 3 438 2 463 3.62e-31 127
MS.gene44515.t1 AT5G39020 27.586 406 242 17 25 400 22 405 9.52e-25 107
MS.gene44515.t1 AT3G51550 26.747 415 230 18 23 395 27 409 1.13e-22 101
MS.gene44515.t1 AT5G39030 26.341 410 232 17 26 395 21 400 2.37e-22 100
MS.gene44515.t1 AT5G39030 26.341 410 232 17 26 395 15 394 2.81e-22 100
MS.gene44515.t1 AT5G28680 25.776 419 255 16 8 395 7 400 7.95e-22 99.0
MS.gene44515.t1 AT5G28680 25.776 419 255 16 8 395 7 400 7.95e-22 99.0
MS.gene44515.t1 AT3G04690 27.168 346 208 14 73 395 73 397 4.18e-21 97.1
MS.gene44515.t1 AT5G38990 24.884 430 268 15 3 400 2 408 8.27e-20 92.8

Find 87 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGTGGTGGGTTCAGTTCT+TGG 0.191122 8.1:+26070359 MS.gene44515:CDS
GCTATGTATATACTTGAATT+TGG 0.198975 8.1:-26069918 None:intergenic
ATTTGAATTTGAATAATCTA+AGG 0.230781 8.1:-26070315 None:intergenic
GCAACCTCAACCGACGTATT+AGG 0.249086 8.1:-26070227 None:intergenic
AAATTCAACGTTTCCGTTCC+CGG 0.281979 8.1:+26069468 MS.gene44515:CDS
TGCAATAAATCTAGCGTTCA+AGG 0.324265 8.1:+26069687 MS.gene44515:CDS
AGAGAATTCGTAGGAAGATT+TGG 0.326951 8.1:-26069370 None:intergenic
ACCACAAAATCATAATAATA+AGG 0.333737 8.1:-26070164 None:intergenic
GTGAAATGTGCAATTGAATT+GGG 0.384912 8.1:-26069663 None:intergenic
ACATATCATGTAGGTGTTGT+TGG 0.391252 8.1:-26069400 None:intergenic
CAAAAGGTTTAAACATAAGT+TGG 0.398467 8.1:+26069985 MS.gene44515:CDS
ACCGATGTTAAGACGGTGTT+TGG 0.400439 8.1:-26069754 None:intergenic
TGTTATGGTGGTTTCTCCAC+TGG 0.401937 8.1:+26070400 MS.gene44515:CDS
AAGAAAGTAGATCATTTCCT+TGG 0.404637 8.1:+26070023 MS.gene44515:CDS
GAAACTAACAACGTTTATAT+CGG 0.409107 8.1:+26069237 MS.gene44515:CDS
AACGCTCAGAATGGTTCCTT+TGG 0.410349 8.1:+26069855 MS.gene44515:CDS
TTGAACCGTTAACACTCTCT+TGG 0.413037 8.1:-26069965 None:intergenic
AGTGAAATGTGCAATTGAAT+TGG 0.420856 8.1:-26069664 None:intergenic
GTGAGGAGAATGAAAAGAAA+TGG 0.422006 8.1:-26069425 None:intergenic
ACAAAATACTCGTTCACTAA+AGG 0.424395 8.1:-26069537 None:intergenic
GAGAGTGTTAACGGTTCAAA+AGG 0.429884 8.1:+26069969 MS.gene44515:CDS
TTTGCAGTGGAAAGGTTAGT+TGG 0.435305 8.1:-26069447 None:intergenic
AATGGAAAATTCTTGCTGTT+TGG 0.449676 8.1:-26069347 None:intergenic
AGGCACTGATGATGATTGAT+TGG 0.450154 8.1:-26069313 None:intergenic
ACTGCCCAAGAGAGTGTTAA+CGG 0.455144 8.1:+26069960 MS.gene44515:CDS
GCTCAGAATGGTTCCTTTGG+AGG 0.459647 8.1:+26069858 MS.gene44515:CDS
CGATGGCTCAGGACTATTGA+AGG 0.460491 8.1:+26070193 MS.gene44515:CDS
CATATCATGTAGGTGTTGTT+GGG 0.467156 8.1:-26069399 None:intergenic
GTGGTTCGTTCCGATGGCTC+AGG 0.471753 8.1:+26070182 MS.gene44515:CDS
CTGTTGCTGAAACTTGTTTG+AGG 0.472306 8.1:-26069279 None:intergenic
CGGTTTACTCTCACGAGCAT+TGG 0.475082 8.1:+26069728 MS.gene44515:CDS
TTGATAACTTATCGAGAAAG+TGG 0.478174 8.1:+26069799 MS.gene44515:CDS
ATTCTTGCTGTTTGGTAGAG+AGG 0.482126 8.1:-26069339 None:intergenic
TTAGTTATATAACTGTCATC+TGG 0.485112 8.1:-26069825 None:intergenic
GGCATCTGTTGTGATAAACT+TGG 0.486080 8.1:-26070143 None:intergenic
AGAAAGTAGATCATTTCCTT+GGG 0.490222 8.1:+26070024 MS.gene44515:CDS
TGGTGATTGTATCCGAGTGC+AGG 0.494217 8.1:-26069171 None:intergenic
TGAACCGTTAACACTCTCTT+GGG 0.499554 8.1:-26069964 None:intergenic
GATTAGTCTTCCCATGGTGG+TGG 0.500528 8.1:+26070346 MS.gene44515:CDS
AGTACCTAATACGTCGGTTG+AGG 0.502642 8.1:+26070223 MS.gene44515:CDS
ATGAAAGTGATTGAACCATC+AGG 0.511120 8.1:+26070284 MS.gene44515:CDS
TTTGAATTTGAATAATCTAA+GGG 0.513434 8.1:-26070314 None:intergenic
TGTTGCTGAAACTTGTTTGA+GGG 0.514154 8.1:-26069278 None:intergenic
GAAACTTGTTTGAGGGTAAG+TGG 0.517106 8.1:-26069271 None:intergenic
AGTGGAAAGGTTAGTTGGTG+AGG 0.524855 8.1:-26069442 None:intergenic
AAACTTGTTTGAGGGTAAGT+GGG 0.531837 8.1:-26069270 None:intergenic
TGATCTACTTTCTTCTCCAC+AGG 0.532470 8.1:-26070014 None:intergenic
ATTCGTAGGAAGATTTGGAA+TGG 0.532991 8.1:-26069365 None:intergenic
CTCGTTCACTAAAGGAGAGT+TGG 0.535641 8.1:-26069529 None:intergenic
GTGGTGGGTTCAGTTCTTGG+AGG 0.539429 8.1:+26070362 MS.gene44515:CDS
ATTAGTCTTCCCATGGTGGT+GGG 0.550018 8.1:+26070347 MS.gene44515:CDS
CTTCAATAGTCCTGAGCCAT+CGG 0.550895 8.1:-26070192 None:intergenic
GCTGTTTGGTAGAGAGGTGA+AGG 0.552588 8.1:-26069333 None:intergenic
AATGCGAATGATGATGTTTG+AGG 0.558071 8.1:-26069597 None:intergenic
TATGGTGGTTTCTCCACTGG+AGG 0.564933 8.1:+26070403 MS.gene44515:CDS
TCACTACAGTTCCCTGCACT+CGG 0.565614 8.1:+26069159 MS.gene44515:CDS
AATTGGGGATTAAATGACTC+GGG 0.571418 8.1:-26069647 None:intergenic
AATCCACAAAACGCTCAGAA+TGG 0.571502 8.1:+26069846 MS.gene44515:CDS
GCATCTGTTGTGATAAACTT+GGG 0.579002 8.1:-26070142 None:intergenic
AGAACTGAACCCACCACCAT+GGG 0.582543 8.1:-26070356 None:intergenic
GAAATGGAAACATATCATGT+AGG 0.583995 8.1:-26069409 None:intergenic
CATGTAGGTGTTGTTGGGAA+CGG 0.592892 8.1:-26069394 None:intergenic
GTTCACTAAAGGAGAGTTGG+TGG 0.599534 8.1:-26069526 None:intergenic
GAAGAAGATTAGTCTTCCCA+TGG 0.599724 8.1:+26070340 MS.gene44515:CDS
TCTAAGGGAACTAAACCTGA+TGG 0.601074 8.1:-26070299 None:intergenic
GACACATACTTCATCAATTG+CGG 0.601314 8.1:+26069195 MS.gene44515:CDS
GATAGAGTGTTGAATTGCCA+TGG 0.603087 8.1:-26069106 None:intergenic
CATAAGTTGGAGTGTTCCTG+TGG 0.604966 8.1:+26069998 MS.gene44515:CDS
AACTTGTTTGAGGGTAAGTG+GGG 0.606548 8.1:-26069269 None:intergenic
AATTGATGAAGTATGTGTCT+TGG 0.611418 8.1:-26069191 None:intergenic
GGTGATTGTATCCGAGTGCA+GGG 0.611539 8.1:-26069170 None:intergenic
TGTCACAGAAATGAAGCCCA+AGG 0.618138 8.1:-26070040 None:intergenic
TTTCACCACCGATGTTAAGA+CGG 0.619305 8.1:-26069761 None:intergenic
GCGTTTAAGATCACCTCCAA+AGG 0.625798 8.1:-26069871 None:intergenic
AAGAACTGAACCCACCACCA+TGG 0.627440 8.1:-26070357 None:intergenic
GGCTTATCTACTTACAGTGG+CGG 0.632917 8.1:+26069708 MS.gene44515:CDS
TGAAATGTGCAATTGAATTG+GGG 0.634097 8.1:-26069662 None:intergenic
ACCAAACACCGTCTTAACAT+CGG 0.638754 8.1:+26069753 MS.gene44515:CDS
ATAGAGTGTTGAATTGCCAT+GGG 0.640643 8.1:-26069105 None:intergenic
GAATTGGGGATTAAATGACT+CGG 0.645558 8.1:-26069648 None:intergenic
TAACAGAGAGAAACCGGGAA+CGG 0.651800 8.1:-26069481 None:intergenic
CAAGGCTTATCTACTTACAG+TGG 0.669174 8.1:+26069705 MS.gene44515:CDS
GAAGATTAGTCTTCCCATGG+TGG 0.674742 8.1:+26070343 MS.gene44515:CDS
TAGCGTAGTACCTAATACGT+CGG 0.680013 8.1:+26070217 MS.gene44515:CDS
AAACACCGTCTTAACATCGG+TGG 0.683836 8.1:+26069756 MS.gene44515:CDS
GGGAACGGTAGAGAATTCGT+AGG 0.703514 8.1:-26069379 None:intergenic
ACTGCAAATGATGAATCTGA+TGG 0.705931 8.1:+26069894 MS.gene44515:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAATTTGAATAATCTA+AGG - chr8.1:26070318-26070337 None:intergenic 15.0%
!! TTTGAATTTGAATAATCTAA+GGG - chr8.1:26070317-26070336 None:intergenic 15.0%
!!! ATGTTATTTTGAATCTTTTT+CGG - chr8.1:26069572-26069591 None:intergenic 15.0%
!!! TTTAGTTATACTTTTTGTTA+TGG + chr8.1:26070385-26070404 MS.gene44515:CDS 15.0%
!! ACCACAAAATCATAATAATA+AGG - chr8.1:26070167-26070186 None:intergenic 20.0%
! CAAAAGGTTTAAACATAAGT+TGG + chr8.1:26069985-26070004 MS.gene44515:CDS 25.0%
! GAAACTAACAACGTTTATAT+CGG + chr8.1:26069237-26069256 MS.gene44515:CDS 25.0%
! GCTATGTATATACTTGAATT+TGG - chr8.1:26069921-26069940 None:intergenic 25.0%
! TTAGTTATATAACTGTCATC+TGG - chr8.1:26069828-26069847 None:intergenic 25.0%
!!! AAACCGAATGCTTTTTTAAA+TGG + chr8.1:26070251-26070270 MS.gene44515:CDS 25.0%
!!! AACCGAATGCTTTTTTAAAT+GGG + chr8.1:26070252-26070271 MS.gene44515:CDS 25.0%
!!! AGTTATACTTTTTGTTATGG+TGG + chr8.1:26070388-26070407 MS.gene44515:CDS 25.0%
!!! GCAGTTTTATAAACAATATC+TGG - chr8.1:26069945-26069964 None:intergenic 25.0%
!!! GCCTTATTATTATGATTTTG+TGG + chr8.1:26070163-26070182 MS.gene44515:CDS 25.0%
AAGAAAGTAGATCATTTCCT+TGG + chr8.1:26070023-26070042 MS.gene44515:CDS 30.0%
AATTGATGAAGTATGTGTCT+TGG - chr8.1:26069194-26069213 None:intergenic 30.0%
ACAAAATACTCGTTCACTAA+AGG - chr8.1:26069540-26069559 None:intergenic 30.0%
AGAAAGTAGATCATTTCCTT+GGG + chr8.1:26070024-26070043 MS.gene44515:CDS 30.0%
AGTGAAATGTGCAATTGAAT+TGG - chr8.1:26069667-26069686 None:intergenic 30.0%
GAAATGGAAACATATCATGT+AGG - chr8.1:26069412-26069431 None:intergenic 30.0%
GTGAAATGTGCAATTGAATT+GGG - chr8.1:26069666-26069685 None:intergenic 30.0%
TGAAATGTGCAATTGAATTG+GGG - chr8.1:26069665-26069684 None:intergenic 30.0%
! ATTTTGTAACAGAGAGAAAC+CGG - chr8.1:26069490-26069509 None:intergenic 30.0%
! TTGATAACTTATCGAGAAAG+TGG + chr8.1:26069799-26069818 MS.gene44515:CDS 30.0%
!! AATGGAAAATTCTTGCTGTT+TGG - chr8.1:26069350-26069369 None:intergenic 30.0%
!! AGCCCATTTAAAAAAGCATT+CGG - chr8.1:26070257-26070276 None:intergenic 30.0%
!!! ATTTTTAGTGATCGACAATC+TGG + chr8.1:26070062-26070081 MS.gene44515:CDS 30.0%
AATTGGGGATTAAATGACTC+GGG - chr8.1:26069650-26069669 None:intergenic 35.0%
ACTGCAAATGATGAATCTGA+TGG + chr8.1:26069894-26069913 MS.gene44515:CDS 35.0%
AGAGAATTCGTAGGAAGATT+TGG - chr8.1:26069373-26069392 None:intergenic 35.0%
ATGAAAGTGATTGAACCATC+AGG + chr8.1:26070284-26070303 MS.gene44515:CDS 35.0%
ATTCGTAGGAAGATTTGGAA+TGG - chr8.1:26069368-26069387 None:intergenic 35.0%
GAATTGGGGATTAAATGACT+CGG - chr8.1:26069651-26069670 None:intergenic 35.0%
GACACATACTTCATCAATTG+CGG + chr8.1:26069195-26069214 MS.gene44515:CDS 35.0%
GCATCTGTTGTGATAAACTT+GGG - chr8.1:26070145-26070164 None:intergenic 35.0%
GTGAGGAGAATGAAAAGAAA+TGG - chr8.1:26069428-26069447 None:intergenic 35.0%
TAAAAAAATAGCTCCTCCAG+TGG - chr8.1:26070419-26070438 None:intergenic 35.0%
TGCAATAAATCTAGCGTTCA+AGG + chr8.1:26069687-26069706 MS.gene44515:CDS 35.0%
! AAACTTGTTTGAGGGTAAGT+GGG - chr8.1:26069273-26069292 None:intergenic 35.0%
! AATGCGAATGATGATGTTTG+AGG - chr8.1:26069600-26069619 None:intergenic 35.0%
! ACATATCATGTAGGTGTTGT+TGG - chr8.1:26069403-26069422 None:intergenic 35.0%
! TGTTGCTGAAACTTGTTTGA+GGG - chr8.1:26069281-26069300 None:intergenic 35.0%
! TTTTGTAACAGAGAGAAACC+GGG - chr8.1:26069489-26069508 None:intergenic 35.0%
!! CATATCATGTAGGTGTTGTT+GGG - chr8.1:26069402-26069421 None:intergenic 35.0%
AAATTCAACGTTTCCGTTCC+CGG + chr8.1:26069468-26069487 MS.gene44515:CDS 40.0%
AATCCACAAAACGCTCAGAA+TGG + chr8.1:26069846-26069865 MS.gene44515:CDS 40.0%
ACCAAACACCGTCTTAACAT+CGG + chr8.1:26069753-26069772 MS.gene44515:CDS 40.0%
CAAGGCTTATCTACTTACAG+TGG + chr8.1:26069705-26069724 MS.gene44515:CDS 40.0%
GGCATCTGTTGTGATAAACT+TGG - chr8.1:26070146-26070165 None:intergenic 40.0%
TAGCGTAGTACCTAATACGT+CGG + chr8.1:26070217-26070236 MS.gene44515:CDS 40.0%
TCTAAGGGAACTAAACCTGA+TGG - chr8.1:26070302-26070321 None:intergenic 40.0%
TGAACCGTTAACACTCTCTT+GGG - chr8.1:26069967-26069986 None:intergenic 40.0%
TGATCTACTTTCTTCTCCAC+AGG - chr8.1:26070017-26070036 None:intergenic 40.0%
TTGAACCGTTAACACTCTCT+TGG - chr8.1:26069968-26069987 None:intergenic 40.0%
TTTCACCACCGATGTTAAGA+CGG - chr8.1:26069764-26069783 None:intergenic 40.0%
TTTGCAGTGGAAAGGTTAGT+TGG - chr8.1:26069450-26069469 None:intergenic 40.0%
! AACTTGTTTGAGGGTAAGTG+GGG - chr8.1:26069272-26069291 None:intergenic 40.0%
! CGTTGAATTTTGCAGTGGAA+AGG - chr8.1:26069458-26069477 None:intergenic 40.0%
! CTGTTGCTGAAACTTGTTTG+AGG - chr8.1:26069282-26069301 None:intergenic 40.0%
! GAAACTTGTTTGAGGGTAAG+TGG - chr8.1:26069274-26069293 None:intergenic 40.0%
! GGAAACGTTGAATTTTGCAG+TGG - chr8.1:26069463-26069482 None:intergenic 40.0%
!! AGGCACTGATGATGATTGAT+TGG - chr8.1:26069316-26069335 None:intergenic 40.0%
!! ATTCTTGCTGTTTGGTAGAG+AGG - chr8.1:26069342-26069361 None:intergenic 40.0%
!! GAAGAAGATTAGTCTTCCCA+TGG + chr8.1:26070340-26070359 MS.gene44515:CDS 40.0%
!! GAGAGTGTTAACGGTTCAAA+AGG + chr8.1:26069969-26069988 MS.gene44515:CDS 40.0%
AAACACCGTCTTAACATCGG+TGG + chr8.1:26069756-26069775 MS.gene44515:CDS 45.0%
AACGCTCAGAATGGTTCCTT+TGG + chr8.1:26069855-26069874 MS.gene44515:CDS 45.0%
ACCGATGTTAAGACGGTGTT+TGG - chr8.1:26069757-26069776 None:intergenic 45.0%
CTCGTTCACTAAAGGAGAGT+TGG - chr8.1:26069532-26069551 None:intergenic 45.0%
CTTCAATAGTCCTGAGCCAT+CGG - chr8.1:26070195-26070214 None:intergenic 45.0%
GGCTTATCTACTTACAGTGG+CGG + chr8.1:26069708-26069727 MS.gene44515:CDS 45.0%
GTTCACTAAAGGAGAGTTGG+TGG - chr8.1:26069529-26069548 None:intergenic 45.0%
TAACAGAGAGAAACCGGGAA+CGG - chr8.1:26069484-26069503 None:intergenic 45.0%
TGTCACAGAAATGAAGCCCA+AGG - chr8.1:26070043-26070062 None:intergenic 45.0%
TGTTATGGTGGTTTCTCCAC+TGG + chr8.1:26070400-26070419 MS.gene44515:CDS 45.0%
! AGTACCTAATACGTCGGTTG+AGG + chr8.1:26070223-26070242 MS.gene44515:CDS 45.0%
! AGTGGAAAGGTTAGTTGGTG+AGG - chr8.1:26069445-26069464 None:intergenic 45.0%
! CATAAGTTGGAGTGTTCCTG+TGG + chr8.1:26069998-26070017 MS.gene44515:CDS 45.0%
! GAACCATTCTGAGCGTTTTG+TGG - chr8.1:26069852-26069871 None:intergenic 45.0%
! GATTTTGTGGTTCGTTCCGA+TGG + chr8.1:26070176-26070195 MS.gene44515:CDS 45.0%
! GCGTTTAAGATCACCTCCAA+AGG - chr8.1:26069874-26069893 None:intergenic 45.0%
!! ACTGCCCAAGAGAGTGTTAA+CGG + chr8.1:26069960-26069979 MS.gene44515:CDS 45.0%
!! ATTAGTCTTCCCATGGTGGT+GGG + chr8.1:26070347-26070366 MS.gene44515:CDS 45.0%
!! CATGTAGGTGTTGTTGGGAA+CGG - chr8.1:26069397-26069416 None:intergenic 45.0%
!! GAAGATTAGTCTTCCCATGG+TGG + chr8.1:26070343-26070362 MS.gene44515:CDS 45.0%
AAGAACTGAACCCACCACCA+TGG - chr8.1:26070360-26070379 None:intergenic 50.0%
AGAACTGAACCCACCACCAT+GGG - chr8.1:26070359-26070378 None:intergenic 50.0%
CGATGGCTCAGGACTATTGA+AGG + chr8.1:26070193-26070212 MS.gene44515:CDS 50.0%
CGGTTTACTCTCACGAGCAT+TGG + chr8.1:26069728-26069747 MS.gene44515:CDS 50.0%
GCAACCTCAACCGACGTATT+AGG - chr8.1:26070230-26070249 None:intergenic 50.0%
GCTCAGAATGGTTCCTTTGG+AGG + chr8.1:26069858-26069877 MS.gene44515:CDS 50.0%
GCTGTTTGGTAGAGAGGTGA+AGG - chr8.1:26069336-26069355 None:intergenic 50.0%
GGGAACGGTAGAGAATTCGT+AGG - chr8.1:26069382-26069401 None:intergenic 50.0%
GGTGATTGTATCCGAGTGCA+GGG - chr8.1:26069173-26069192 None:intergenic 50.0%
TATGGTGGTTTCTCCACTGG+AGG + chr8.1:26070403-26070422 MS.gene44515:CDS 50.0%
TCACTACAGTTCCCTGCACT+CGG + chr8.1:26069159-26069178 MS.gene44515:CDS 50.0%
TGGTGATTGTATCCGAGTGC+AGG - chr8.1:26069174-26069193 None:intergenic 50.0%
!! ATGGTGGTGGGTTCAGTTCT+TGG + chr8.1:26070359-26070378 MS.gene44515:CDS 50.0%
!! GATTAGTCTTCCCATGGTGG+TGG + chr8.1:26070346-26070365 MS.gene44515:CDS 50.0%
!! GTGGTGGGTTCAGTTCTTGG+AGG + chr8.1:26070362-26070381 MS.gene44515:CDS 55.0%
GTGGTTCGTTCCGATGGCTC+AGG + chr8.1:26070182-26070201 MS.gene44515:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 26069108 26070439 26069108 ID=MS.gene44515
chr8.1 mRNA 26069108 26070439 26069108 ID=MS.gene44515.t1;Parent=MS.gene44515
chr8.1 exon 26069108 26070439 26069108 ID=MS.gene44515.t1.exon1;Parent=MS.gene44515.t1
chr8.1 CDS 26069108 26070439 26069108 ID=cds.MS.gene44515.t1;Parent=MS.gene44515.t1
Gene Sequence

>MS.gene44515

ATGGCAATTCAACACTCTATCATTTTACTTACTTATCTTCTTCATTTCTCATCACTACAGTTCCCTGCACTCGGATACAATCACCAAGACACATACTTCATCAATTGCGGATCAGATATCACTATTACTGAAACTAACAACGTTTATATCGGTGAATCAAACCCCACTTACCCTCAAACAAGTTTCAGCAACAGTAACATAGAAACCAATCAATCATCATCAGTGCCTTCACCTCTCTACCAAACAGCAAGAATTTTCCATTCCAAATCTTCCTACGAATTCTCTACCGTTCCCAACAACACCTACATGATATGTTTCCATTTCTTTTCATTCTCCTCACCAACTAACCTTTCCACTGCAAAATTCAACGTTTCCGTTCCCGGTTTCTCTCTGTTACAAAATTTTGATGCTAAAAATACCACCAACTCTCCTTTAGTGAACGAGTATTTTGTTAAAATCATCCGAAAAAGATTCAAAATAACATTCACACCTCAAACATCATCATTCGCATTTGTTAACGCAATAGAACTCTTTATACTCCCGAGTCATTTAATCCCCAATTCAATTGCACATTTCACTTGCAATAAATCTAGCGTTCAAGGCTTATCTACTTACAGTGGCGGTTTACTCTCACGAGCATTGGAAACCAAACACCGTCTTAACATCGGTGGTGAAACTGTCACTAGAGATATTGATAACTTATCGAGAAAGTGGTTACCAGATGACAGTTATATAACTAATCCACAAAACGCTCAGAATGGTTCCTTTGGAGGTGATCTTAAACGCACTGCAAATGATGAATCTGATGGTCCAAATTCAAGTATATACATAGCTCCAGATATTGTTTATAAAACTGCCCAAGAGAGTGTTAACGGTTCAAAAGGTTTAAACATAAGTTGGAGTGTTCCTGTGGAGAAGAAAGTAGATCATTTCCTTGGGCTTCATTTCTGTGACATTTTTAGTGATCGACAATCTGGTCTTACATCTTTCACTCTCTTCATTTATGACAGTTATGTTATAAATGTAAATAATGACCCAAGTTTATCACAACAGATGCCTTATTATTATGATTTTGTGGTTCGTTCCGATGGCTCAGGACTATTGAAGGTTAGCGTAGTACCTAATACGTCGGTTGAGGTTGCGAAACCGAATGCTTTTTTAAATGGGCTAGAAGTGATGAAAGTGATTGAACCATCAGGTTTAGTTCCCTTAGATTATTCAAATTCAAATTCGAAGAAGATTAGTCTTCCCATGGTGGTGGGTTCAGTTCTTGGAGGTTTAGTTATACTTTTTGTTATGGTGGTTTCTCCACTGGAGGAGCTATTTTTTTAG
Protein sequence

>MS.gene44515.t1

MAIQHSIILLTYLLHFSSLQFPALGYNHQDTYFINCGSDITITETNNVYIGESNPTYPQTSFSNSNIETNQSSSVPSPLYQTARIFHSKSSYEFSTVPNNTYMICFHFFSFSSPTNLSTAKFNVSVPGFSLLQNFDAKNTTNSPLVNEYFVKIIRKRFKITFTPQTSSFAFVNAIELFILPSHLIPNSIAHFTCNKSSVQGLSTYSGGLLSRALETKHRLNIGGETVTRDIDNLSRKWLPDDSYITNPQNAQNGSFGGDLKRTANDESDGPNSSIYIAPDIVYKTAQESVNGSKGLNISWSVPVEKKVDHFLGLHFCDIFSDRQSGLTSFTLFIYDSYVINVNNDPSLSQQMPYYYDFVVRSDGSGLLKVSVVPNTSVEVAKPNAFLNGLEVMKVIEPSGLVPLDYSNSNSKKISLPMVVGSVLGGLVILFVMVVSPLEELFF