AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060485


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060485.t1 MTR_8g024380 94.987 379 18 1 1 378 383 761 0.0 743
MS.gene060485.t1 MTR_1g078110 81.530 379 67 2 1 379 382 757 0.0 638
MS.gene060485.t1 MTR_2g049200 73.333 375 97 3 1 375 384 755 0.0 568
MS.gene060485.t1 MTR_8g024390 70.822 377 105 3 2 375 383 757 0.0 548
MS.gene060485.t1 MTR_8g024420 69.312 378 111 3 1 375 346 721 0.0 527
MS.gene060485.t1 MTR_8g024370 68.407 383 108 4 1 375 379 756 1.19e-174 505
MS.gene060485.t1 MTR_7g118080 65.963 379 120 6 4 378 385 758 3.86e-167 486
MS.gene060485.t1 MTR_7g079310 45.550 382 193 8 4 376 389 764 2.05e-105 327
MS.gene060485.t1 MTR_7g079300 45.910 379 194 8 4 376 393 766 2.54e-104 324
MS.gene060485.t1 MTR_1g079120 46.842 380 190 7 4 376 387 761 1.82e-103 322
MS.gene060485.t1 MTR_4g073540 44.359 390 195 13 3 379 391 771 1.31e-87 281
MS.gene060485.t1 MTR_8g022870 41.818 385 200 10 11 379 403 779 1.55e-83 270
MS.gene060485.t1 MTR_8g027660 61.538 195 51 1 185 379 80 250 6.26e-79 243
MS.gene060485.t1 MTR_4g102400 40.476 378 189 10 3 375 406 752 1.54e-77 254
MS.gene060485.t1 MTR_1g102350 37.887 388 215 11 3 378 406 779 3.35e-76 251
MS.gene060485.t1 MTR_7g075900 43.312 314 161 7 69 375 468 771 6.00e-75 247
MS.gene060485.t1 MTR_7g081420 40.992 383 190 12 12 375 419 784 6.25e-74 244
MS.gene060485.t1 MTR_7g081750 45.862 290 146 5 89 375 516 797 6.87e-74 245
MS.gene060485.t1 MTR_5g025010 40.214 373 193 12 12 377 370 719 7.70e-74 243
MS.gene060485.t1 MTR_8g021130 40.897 379 193 13 12 373 408 772 8.89e-74 244
MS.gene060485.t1 MTR_2g042130 36.939 379 221 7 9 379 408 776 9.75e-74 244
MS.gene060485.t1 MTR_5g025010 40.214 373 193 12 12 377 402 751 1.52e-73 243
MS.gene060485.t1 MTR_4g125180 42.810 306 159 8 76 373 452 749 1.77e-73 243
MS.gene060485.t1 MTR_5g044060 78.676 136 29 0 89 224 1 136 1.78e-73 226
MS.gene060485.t1 MTR_7g081580 40.314 382 193 12 12 375 419 783 9.93e-73 242
MS.gene060485.t1 MTR_5g016120 41.600 375 199 10 11 376 398 761 5.58e-72 239
MS.gene060485.t1 MTR_3g102810 39.733 375 210 7 12 376 387 755 1.07e-71 238
MS.gene060485.t1 MTR_7g098630 40.209 383 194 11 12 375 394 760 2.39e-71 239
MS.gene060485.t1 MTR_7g081380 45.973 298 147 8 83 375 518 806 4.70e-71 237
MS.gene060485.t1 MTR_8g072440 38.874 373 196 10 12 377 365 712 1.50e-69 232
MS.gene060485.t1 MTR_8g072440 38.874 373 196 10 12 377 407 754 3.10e-69 231
MS.gene060485.t1 MTR_7g081500 41.910 377 194 11 12 375 418 782 5.16e-69 231
MS.gene060485.t1 MTR_5g011310 39.946 373 194 10 13 375 401 753 1.06e-68 230
MS.gene060485.t1 MTR_4g134320 39.529 382 204 12 3 376 404 766 1.63e-68 230
MS.gene060485.t1 MTR_3g061110 39.024 369 208 8 12 375 396 752 2.83e-68 229
MS.gene060485.t1 MTR_7g481600 38.482 382 200 11 12 375 419 783 5.58e-68 229
MS.gene060485.t1 MTR_4g103430 40.314 382 209 10 3 377 401 770 7.23e-68 228
MS.gene060485.t1 MTR_5g085690 40.104 384 192 12 12 375 423 788 8.16e-68 228
MS.gene060485.t1 MTR_7g098070 39.948 383 201 11 3 376 400 762 1.01e-67 228
MS.gene060485.t1 MTR_0047s0120 40.270 370 205 9 11 373 394 754 1.26e-67 227
MS.gene060485.t1 MTR_4g095360 37.736 371 215 8 13 376 394 755 1.50e-67 227
MS.gene060485.t1 MTR_5g011320 38.978 372 198 10 13 375 394 745 1.95e-67 227
MS.gene060485.t1 MTR_5g055920 39.535 387 201 12 3 375 299 666 2.59e-67 225
MS.gene060485.t1 MTR_5g011340 44.231 312 151 8 69 375 457 750 7.08e-67 225
MS.gene060485.t1 MTR_8g042710 36.104 385 210 13 9 377 401 765 2.04e-66 224
MS.gene060485.t1 MTR_4g103480 39.164 383 208 11 3 375 419 786 2.62e-66 224
MS.gene060485.t1 MTR_3g082200 37.852 391 199 15 3 375 267 631 5.89e-66 221
MS.gene060485.t1 MTR_5g096750 41.161 379 188 15 9 377 413 766 9.18e-66 223
MS.gene060485.t1 MTR_3g082200 37.852 391 199 15 3 375 282 646 9.20e-66 220
MS.gene060485.t1 MTR_5g011190 38.360 378 199 11 13 378 401 756 1.24e-65 222
MS.gene060485.t1 MTR_1g018510 38.624 378 208 10 12 373 354 723 1.87e-65 221
MS.gene060485.t1 MTR_5g011370 38.400 375 197 11 13 375 421 773 2.63e-65 221
MS.gene060485.t1 MTR_3g082200 37.852 391 199 15 3 375 405 769 4.09e-65 221
MS.gene060485.t1 MTR_5g011280 38.421 380 191 11 13 375 402 755 5.48e-65 220
MS.gene060485.t1 MTR_5g011260 38.522 379 197 11 13 378 399 754 6.06e-65 220
MS.gene060485.t1 MTR_4g103450 39.164 383 208 11 3 375 376 743 7.33e-65 219
MS.gene060485.t1 MTR_5g011270 39.467 375 193 10 13 375 399 751 9.61e-65 219
MS.gene060485.t1 MTR_8g042670 36.579 380 208 13 11 377 276 635 1.38e-64 217
MS.gene060485.t1 MTR_8g042670 36.579 380 208 13 11 377 400 759 8.62e-64 217
MS.gene060485.t1 MTR_8g033150 37.435 382 204 12 3 375 369 724 1.66e-63 216
MS.gene060485.t1 MTR_8g033150 37.435 382 204 12 3 375 396 751 2.93e-63 216
MS.gene060485.t1 MTR_4g103495 40.214 373 205 9 11 377 265 625 4.95e-62 210
MS.gene060485.t1 MTR_4g103490 38.667 375 202 11 12 375 426 783 5.03e-61 210
MS.gene060485.t1 MTR_8g083220 36.927 371 208 10 15 379 428 778 5.14e-61 210
MS.gene060485.t1 MTR_1g006990 37.662 385 197 13 6 378 384 737 8.21e-61 209
MS.gene060485.t1 MTR_1g007030 37.143 385 199 13 6 378 382 735 8.87e-61 208
MS.gene060485.t1 MTR_8g027260 40.065 307 167 5 76 378 361 654 2.58e-60 206
MS.gene060485.t1 MTR_4g053630 36.074 377 225 9 5 378 292 655 8.47e-60 204
MS.gene060485.t1 MTR_8g005710 38.529 340 188 8 46 378 376 701 1.50e-59 204
MS.gene060485.t1 MTR_4g053630 36.074 377 225 9 5 378 369 732 2.67e-59 204
MS.gene060485.t1 MTR_4g103400 37.533 381 207 12 11 375 411 776 2.83e-59 205
MS.gene060485.t1 MTR_2g018135 38.363 391 206 11 2 377 414 784 1.92e-58 203
MS.gene060485.t1 MTR_7g034380 36.815 383 207 13 3 377 338 693 3.45e-58 201
MS.gene060485.t1 MTR_8g079900 36.267 375 205 10 9 375 295 643 4.00e-58 200
MS.gene060485.t1 MTR_8g079900 36.267 375 205 10 9 375 393 741 1.16e-57 200
MS.gene060485.t1 MTR_6g055570 40.453 309 160 10 75 375 437 729 1.58e-57 199
MS.gene060485.t1 MTR_1g048110 36.623 385 201 14 6 378 380 733 6.00e-57 198
MS.gene060485.t1 MTR_3g104930 37.209 387 202 14 11 377 398 763 6.54e-57 198
MS.gene060485.t1 MTR_2g018125 37.468 387 208 10 5 377 419 785 2.52e-56 197
MS.gene060485.t1 MTR_8g006680 37.240 384 196 17 4 378 378 725 8.57e-56 195
MS.gene060485.t1 MTR_8g005300 37.240 384 196 17 4 378 378 725 8.57e-56 195
MS.gene060485.t1 MTR_8g005640 37.240 384 196 17 4 378 378 725 8.57e-56 195
MS.gene060485.t1 MTR_6g075370 41.544 272 135 8 101 366 424 677 1.20e-55 194
MS.gene060485.t1 MTR_7g104200 39.744 312 165 6 69 375 448 741 5.42e-55 193
MS.gene060485.t1 MTR_7g075890 38.750 320 169 9 63 375 598 897 9.04e-55 194
MS.gene060485.t1 MTR_3g464790 37.637 364 183 14 29 377 399 733 2.74e-54 191
MS.gene060485.t1 MTR_3g114420 39.384 292 158 8 94 376 484 765 4.64e-54 191
MS.gene060485.t1 MTR_4g053635 38.907 311 172 9 70 378 381 675 2.61e-53 187
MS.gene060485.t1 MTR_3g010080 39.677 310 164 11 76 378 441 734 4.66e-51 182
MS.gene060485.t1 MTR_4g103495 40.810 321 173 8 11 326 414 722 2.16e-50 180
MS.gene060485.t1 MTR_6g055410 40.659 273 140 8 110 375 454 711 4.69e-50 179
MS.gene060485.t1 MTR_2g042650 37.755 294 153 9 95 378 372 645 3.63e-46 167
MS.gene060485.t1 MTR_2g044630 37.134 307 149 12 79 377 437 707 4.49e-43 159
MS.gene060485.t1 MTR_4g127480 38.047 297 142 12 99 374 537 812 6.00e-39 148
MS.gene060485.t1 MTR_7g079295 49.669 151 71 3 228 376 363 510 1.48e-37 142
MS.gene060485.t1 MTR_4g126230 38.462 208 109 6 101 303 55 248 5.87e-37 134
MS.gene060485.t1 MTR_2g042640 36.567 268 129 10 79 337 376 611 6.22e-37 141
MS.gene060485.t1 MTR_3g452290 29.639 388 162 14 3 378 283 571 1.57e-35 137
MS.gene060485.t1 MTR_3g451220 29.639 388 162 14 3 378 283 571 1.57e-35 137
MS.gene060485.t1 MTR_4g132620 35.231 281 158 9 101 370 542 809 1.69e-35 138
MS.gene060485.t1 MTR_8g089230 34.932 292 161 11 101 377 570 847 5.28e-35 137
MS.gene060485.t1 MTR_2g070260 38.208 212 103 8 161 363 1 193 1.47e-34 127
MS.gene060485.t1 MTR_3g114140 38.710 248 134 7 94 333 184 421 1.91e-34 132
MS.gene060485.t1 MTR_2g037850 39.662 237 117 7 97 316 530 757 8.90e-33 130
MS.gene060485.t1 MTR_8g042710 37.436 195 100 7 9 192 401 584 2.57e-29 120
MS.gene060485.t1 MTR_4g053665 33.977 259 125 7 120 378 1 213 6.18e-29 112
MS.gene060485.t1 MTR_7g081660 37.569 181 103 4 197 375 380 552 2.67e-28 116
MS.gene060485.t1 MTR_2g046740 32.881 295 160 11 101 375 562 838 8.40e-28 115
MS.gene060485.t1 MTR_3g114410 39.474 190 106 4 6 192 397 580 1.29e-26 111
MS.gene060485.t1 MTR_4g071560 37.297 185 108 6 14 193 339 520 2.66e-24 104
MS.gene060485.t1 MTR_5g081130 36.158 177 99 6 204 375 5 172 2.11e-22 94.4
MS.gene060485.t1 MTR_5g011300 51.087 92 43 1 161 252 1 90 7.88e-19 81.3
MS.gene060485.t1 MTR_4g118440 28.968 252 121 11 119 365 1 199 3.33e-16 77.4
MS.gene060485.t1 MTR_3g114400 31.977 172 88 6 213 376 13 163 6.61e-15 72.4
MS.gene060485.t1 MTR_3g005755 50.685 73 30 3 152 221 237 306 9.65e-14 71.6
MS.gene060485.t1 MTR_8g027670 51.250 80 39 0 249 328 33 112 1.16e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060485.t1 AT5G67090 43.251 363 172 8 9 364 380 715 7.02e-85 273
MS.gene060485.t1 AT4G34980 40.206 388 215 11 3 379 381 762 4.05e-81 263
MS.gene060485.t1 AT3G14240 40.365 384 205 9 13 379 397 773 2.13e-76 251
MS.gene060485.t1 AT2G05920 37.228 368 214 7 13 373 390 747 1.28e-75 249
MS.gene060485.t1 AT5G67360 40.374 374 203 8 11 376 394 755 3.30e-75 248
MS.gene060485.t1 AT5G51750 37.958 382 219 9 5 378 406 777 4.17e-74 245
MS.gene060485.t1 AT1G04110 38.220 382 208 10 11 377 404 772 1.01e-72 241
MS.gene060485.t1 AT1G20160 39.433 388 204 13 4 376 352 723 6.28e-69 230
MS.gene060485.t1 AT1G20160 39.691 388 203 13 4 376 391 762 1.01e-68 231
MS.gene060485.t1 AT2G04160 38.802 384 192 13 12 377 414 772 6.68e-68 228
MS.gene060485.t1 AT3G14067 37.037 378 214 10 13 375 399 767 2.13e-66 224
MS.gene060485.t1 AT1G01900 44.966 298 153 6 85 375 478 771 3.37e-64 218
MS.gene060485.t1 AT5G59810 37.795 381 200 10 11 377 419 776 2.24e-61 211
MS.gene060485.t1 AT4G00230 36.508 378 201 11 9 375 394 743 6.36e-61 209
MS.gene060485.t1 AT4G26330 41.049 324 171 9 61 375 409 721 9.54e-61 208
MS.gene060485.t1 AT4G26330 41.049 324 171 9 61 375 423 735 1.14e-60 208
MS.gene060485.t1 AT1G20150 38.243 387 194 12 13 375 405 770 2.08e-59 205
MS.gene060485.t1 AT5G45650 40.187 321 170 8 64 377 485 790 7.05e-57 199
MS.gene060485.t1 AT5G45650 40.187 321 170 8 64 377 485 790 7.05e-57 199
MS.gene060485.t1 AT1G32970 36.745 381 216 9 2 375 360 722 1.52e-56 197
MS.gene060485.t1 AT4G10540 38.218 348 193 8 32 375 434 763 4.01e-56 196
MS.gene060485.t1 AT3G46850 36.675 379 210 11 2 375 381 734 3.92e-55 193
MS.gene060485.t1 AT4G10550 40.062 322 171 9 57 375 408 710 4.79e-55 192
MS.gene060485.t1 AT4G10550 40.062 322 171 9 57 375 408 710 4.79e-55 192
MS.gene060485.t1 AT4G10550 40.062 322 171 9 57 375 464 766 6.29e-55 193
MS.gene060485.t1 AT4G10550 40.062 322 171 9 57 375 480 782 8.60e-55 193
MS.gene060485.t1 AT5G03620 37.383 321 170 7 68 375 456 758 2.22e-54 191
MS.gene060485.t1 AT5G11940 39.812 319 169 10 62 375 452 752 3.07e-54 191
MS.gene060485.t1 AT5G58830 37.705 366 188 13 33 377 361 707 3.40e-54 190
MS.gene060485.t1 AT3G46840 36.267 375 198 12 11 375 391 734 5.53e-54 190
MS.gene060485.t1 AT5G58840 37.027 370 194 14 13 375 369 706 1.29e-53 189
MS.gene060485.t1 AT4G10520 38.166 338 188 7 41 375 425 744 1.92e-53 189
MS.gene060485.t1 AT4G10510 34.987 383 221 10 2 375 331 694 3.66e-53 187
MS.gene060485.t1 AT4G10510 34.987 383 221 10 2 375 346 709 4.22e-53 187
MS.gene060485.t1 AT4G10510 34.987 383 221 10 2 375 390 753 5.19e-53 187
MS.gene060485.t1 AT4G10510 34.987 383 221 10 2 375 402 765 7.04e-53 187
MS.gene060485.t1 AT5G59100 35.176 398 192 14 3 375 381 737 3.03e-52 185
MS.gene060485.t1 AT1G32960 36.815 383 214 13 2 375 402 765 4.59e-52 185
MS.gene060485.t1 AT5G59090 34.840 376 208 12 12 378 384 731 1.72e-51 183
MS.gene060485.t1 AT5G59090 34.840 376 208 12 12 378 382 729 2.31e-51 183
MS.gene060485.t1 AT5G59090 34.574 376 204 12 12 378 384 726 2.53e-51 182
MS.gene060485.t1 AT5G58820 36.986 365 187 12 33 375 357 700 7.08e-51 181
MS.gene060485.t1 AT5G59120 34.031 382 218 13 2 375 372 727 9.47e-50 178
MS.gene060485.t1 AT5G59190 36.314 369 201 13 13 374 346 687 2.64e-49 177
MS.gene060485.t1 AT4G21640 37.152 323 181 11 56 375 424 727 2.25e-48 174
MS.gene060485.t1 AT1G66210 36.188 362 193 11 28 375 413 750 2.32e-48 175
MS.gene060485.t1 AT5G59130 35.989 364 190 13 35 375 382 725 2.68e-48 174
MS.gene060485.t1 AT5G59130 35.989 364 190 13 35 375 343 686 2.70e-48 174
MS.gene060485.t1 AT5G59130 35.989 364 190 13 35 375 378 721 2.78e-48 174
MS.gene060485.t1 AT4G21326 38.871 319 174 6 62 377 389 689 3.05e-48 174
MS.gene060485.t1 AT4G21630 36.842 323 182 10 57 375 449 753 8.48e-48 173
MS.gene060485.t1 AT1G32940 35.844 385 215 12 2 375 348 711 9.14e-48 172
MS.gene060485.t1 AT1G32940 35.844 385 215 12 2 375 348 711 9.14e-48 172
MS.gene060485.t1 AT1G66220 31.806 371 223 8 9 375 400 744 1.05e-47 173
MS.gene060485.t1 AT1G32950 35.509 383 219 13 2 375 347 710 1.15e-47 172
MS.gene060485.t1 AT1G32950 35.509 383 219 13 2 375 398 761 1.33e-47 172
MS.gene060485.t1 AT1G32940 35.844 385 215 12 2 375 399 762 1.49e-47 172
MS.gene060485.t1 AT4G21323 36.677 319 180 6 59 373 491 791 2.46e-47 172
MS.gene060485.t1 AT5G59130 36.544 353 193 12 35 375 382 715 2.48e-47 171
MS.gene060485.t1 AT2G39850 35.503 338 177 13 60 375 447 765 1.36e-45 167
MS.gene060485.t1 AT4G21650 35.294 323 187 9 57 375 456 760 4.24e-45 166
MS.gene060485.t1 AT5G45640 36.644 292 154 8 94 378 487 754 9.57e-44 162
MS.gene060485.t1 AT4G10530 34.018 341 191 7 38 375 426 735 1.69e-43 161
MS.gene060485.t1 AT4G15040 33.511 376 210 11 10 375 340 685 7.14e-43 159
MS.gene060485.t1 AT4G15040 33.511 376 210 11 10 375 340 685 7.14e-43 159
MS.gene060485.t1 AT1G32980 45.550 191 94 4 157 344 3 186 5.94e-41 143
MS.gene060485.t1 AT2G19170 38.276 290 152 12 99 374 533 809 9.78e-39 147
MS.gene060485.t1 AT2G19170 38.276 290 152 12 99 374 533 809 9.78e-39 147
MS.gene060485.t1 AT4G30020 37.241 290 155 11 99 374 534 810 1.66e-37 144
MS.gene060485.t1 AT4G30020 37.241 290 155 11 99 374 534 810 1.66e-37 144
MS.gene060485.t1 AT4G30020 37.241 290 155 11 99 374 534 810 1.66e-37 144
MS.gene060485.t1 AT4G30020 37.241 290 155 11 99 374 534 810 1.66e-37 144
MS.gene060485.t1 AT4G20430 35.274 292 160 12 101 377 549 826 6.37e-35 136
MS.gene060485.t1 AT4G20430 35.274 292 160 12 101 377 573 850 7.24e-35 136
MS.gene060485.t1 AT4G20430 35.274 292 160 12 101 377 573 850 7.24e-35 136
MS.gene060485.t1 AT1G62340 36.271 295 159 12 94 375 551 829 1.96e-34 135
MS.gene060485.t1 AT1G30600 30.144 418 231 17 1 375 427 826 4.01e-33 131
MS.gene060485.t1 AT5G44530 34.138 290 162 11 101 375 558 833 3.20e-32 129
MS.gene060485.t1 AT5G44530 32.063 315 160 12 101 375 558 858 4.96e-29 119
MS.gene060485.t1 AT4G00230 40.625 192 93 6 9 194 394 570 9.67e-29 118
MS.gene060485.t1 AT5G58840 38.798 183 89 8 13 192 369 531 1.46e-24 105
MS.gene060485.t1 AT5G03620 46.457 127 63 1 68 194 456 577 1.82e-22 99.4
MS.gene060485.t1 AT5G59110 35.976 164 97 4 219 377 8 168 1.44e-20 88.2
MS.gene060485.t1 AT1G32940 35.349 215 119 8 2 208 399 601 1.47e-17 84.7

Find 70 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTGCTCTGAACCTTCTT+TGG 0.224917 8.1:-75941415 MS.gene060485:CDS
TTTATTGCATATTTCAATAA+TGG 0.246626 8.1:-75941375 MS.gene060485:CDS
CCAGGGTCGAGTGCTCTATT+TGG 0.247734 8.1:+75941537 None:intergenic
AAAATGAAGAAAGTGGCTTT+TGG 0.302465 8.1:-75941159 MS.gene060485:CDS
TTGAATGAAGCAAAAGTTCT+TGG 0.310268 8.1:-75942107 MS.gene060485:CDS
TTGACTGCTTCTCCATTGAT+TGG 0.328555 8.1:+75942014 None:intergenic
TCAGTGAATACCAACTTGTT+TGG 0.336055 8.1:+75941234 None:intergenic
CAGTGAATACCAACTTGTTT+GGG 0.345539 8.1:+75941235 None:intergenic
AAATGTTCCTGTGATGGATT+TGG 0.347365 8.1:-75941799 MS.gene060485:CDS
TTTGATAAGTGGAACATCTA+TGG 0.353717 8.1:-75941748 MS.gene060485:CDS
TGAAAGGAGCACACGGTGAT+TGG 0.356416 8.1:-75941692 MS.gene060485:CDS
TGAATGAAGCAAAAGTTCTT+GGG 0.362762 8.1:-75942106 MS.gene060485:CDS
AATGTTCCTGTGATGGATTT+GGG 0.372980 8.1:-75941798 MS.gene060485:CDS
TAACTGTTCTATGAAATTCT+TGG 0.374058 8.1:+75941331 None:intergenic
ATAATGGAAATTCTTCTTCA+AGG 0.380641 8.1:-75941359 MS.gene060485:CDS
AACAAGTTCAATTTGATAAG+TGG 0.388291 8.1:-75941759 MS.gene060485:CDS
ATGGCATGTCCTCATGTTGC+AGG 0.395406 8.1:-75941729 MS.gene060485:CDS
AACTGTTCTATGAAATTCTT+GGG 0.410693 8.1:+75941332 None:intergenic
TTGAAATATGCAATAAAAGA+AGG 0.421126 8.1:+75941381 None:intergenic
TCGAGTATTGCGACCACGAT+TGG 0.427269 8.1:+75941096 None:intergenic
GGGTTTATGTGACAATGTTA+AGG 0.427670 8.1:-75942207 MS.gene060485:CDS
TCTAGCATTACTCAGGTTGA+AGG 0.431224 8.1:-75941276 MS.gene060485:CDS
ATTGGAGCCCTGCCGCGATT+CGG 0.433464 8.1:-75941674 MS.gene060485:CDS
ATGTCAGGTTTCAAAACATA+TGG 0.439469 8.1:+75941861 None:intergenic
CCTGGTCTTATTTACGATGT+TGG 0.451955 8.1:-75941519 MS.gene060485:CDS
ATCATTGTTGATCCAATCAA+TGG 0.454770 8.1:-75942026 MS.gene060485:CDS
CATAGAACAGTTACCAATGT+TGG 0.459195 8.1:-75941321 MS.gene060485:CDS
GTACCAGGAGCAGTGATGTC+AGG 0.480347 8.1:+75941846 None:intergenic
ATTGCCGACCGAATCGCGGC+AGG 0.480666 8.1:+75941666 None:intergenic
TCCATCACAGGAACATTTGT+GGG 0.503984 8.1:+75941804 None:intergenic
TGACCAGCTCCCAATGCAAA+AGG 0.509119 8.1:+75941567 None:intergenic
ATCCATCACAGGAACATTTG+TGG 0.515639 8.1:+75941803 None:intergenic
AAACCTGACATCACTGCTCC+TGG 0.518027 8.1:-75941849 MS.gene060485:CDS
AAGGAGCATATTAAAGACAT+TGG 0.525407 8.1:-75941612 MS.gene060485:CDS
TGTTTCTCCCTCACCAACAT+TGG 0.525851 8.1:+75941308 None:intergenic
TGAAATATGCAATAAAAGAA+GGG 0.526670 8.1:+75941382 None:intergenic
ACATATGGACAGCTATTTGA+AGG 0.529731 8.1:+75941876 None:intergenic
ATTGATTGGATCAACAATGA+TGG 0.534175 8.1:+75942028 None:intergenic
TTATGTTTCTAGCATTACTC+AGG 0.537982 8.1:-75941283 MS.gene060485:CDS
CAGTGTTATCCCAAACAAGT+TGG 0.541444 8.1:-75941244 MS.gene060485:CDS
GGACATATTTGATAATACTA+AGG 0.543524 8.1:-75941631 MS.gene060485:CDS
TAAGAAGAAACACTAGGTGC+TGG 0.550269 8.1:+75941912 None:intergenic
CTAGCATTACTCAGGTTGAA+GGG 0.551958 8.1:-75941275 MS.gene060485:CDS
GAGCCCTGCCGCGATTCGGT+CGG 0.560337 8.1:-75941670 MS.gene060485:CDS
GAATGAAGCAAAAGTTCTTG+GGG 0.564155 8.1:-75942105 MS.gene060485:CDS
TCCTCATGTTGCAGGTGTCG+CGG 0.564392 8.1:-75941721 MS.gene060485:CDS
AGAAACTAAGCTACAAGTTG+AGG 0.565728 8.1:-75941203 MS.gene060485:CDS
AACAGTTACCAATGTTGGTG+AGG 0.572151 8.1:-75941316 MS.gene060485:CDS
CCAACATCGTAAATAAGACC+AGG 0.572452 8.1:+75941519 None:intergenic
GTTTCTTCTTATAGTTCAAG+AGG 0.574131 8.1:-75941900 MS.gene060485:CDS
GGGTAGTTAAGATCCAAAGA+AGG 0.586445 8.1:+75941402 None:intergenic
GCCCACAAATGTTCCTGTGA+TGG 0.589065 8.1:-75941805 MS.gene060485:CDS
TGATTCCCCAAATCCATCAC+AGG 0.589870 8.1:+75941792 None:intergenic
TTGCCGACCGAATCGCGGCA+GGG 0.595732 8.1:+75941667 None:intergenic
ACAGTTACCAATGTTGGTGA+GGG 0.598993 8.1:-75941315 MS.gene060485:CDS
GTACAAATATCTTAGCTGCA+TGG 0.601561 8.1:-75941827 MS.gene060485:CDS
TTTCTTCTTATAGTTCAAGA+GGG 0.602199 8.1:-75941899 MS.gene060485:CDS
CCAAATAGAGCACTCGACCC+TGG 0.602791 8.1:-75941537 MS.gene060485:CDS
GCCGCGACACCTGCAACATG+AGG 0.619878 8.1:+75941720 None:intergenic
ATTCGAAGAAGATCTTGTGA+TGG 0.644214 8.1:+75941437 None:intergenic
CATAATTGCCGACCGAATCG+CGG 0.646114 8.1:+75941662 None:intergenic
GCAGCTAAGATATTTGTACC+AGG 0.652313 8.1:+75941831 None:intergenic
ATGTTCCTGTGATGGATTTG+GGG 0.657697 8.1:-75941797 MS.gene060485:CDS
GAACTATAAGAAGAAACACT+AGG 0.659947 8.1:+75941906 None:intergenic
GATTGTTGTGTGTGAAGACA+AGG 0.667481 8.1:-75942162 MS.gene060485:CDS
TGTTTGGGATAACACTGACA+CGG 0.670435 8.1:+75941250 None:intergenic
TGTGGTTAGAAGTCCAATCG+TGG 0.714853 8.1:-75941109 MS.gene060485:CDS
GTCGGCAATTATGACAACGT+CGG 0.719253 8.1:-75941652 MS.gene060485:CDS
CAACATCGTAAATAAGACCA+GGG 0.729565 8.1:+75941520 None:intergenic
TTGGATGGATATGAAGCATG+TGG 0.729881 8.1:-75941127 MS.gene060485:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTGCATATTTCAATAA+TGG - chr8.1:75941926-75941945 MS.gene060485:CDS 15.0%
!! TGAAATATGCAATAAAAGAA+GGG + chr8.1:75941922-75941941 None:intergenic 20.0%
!! TTGAAATATGCAATAAAAGA+AGG + chr8.1:75941923-75941942 None:intergenic 20.0%
!!! AATTATCGACTTGATAAAAA+AGG + chr8.1:75941175-75941194 None:intergenic 20.0%
! AACAAGTTCAATTTGATAAG+TGG - chr8.1:75941542-75941561 MS.gene060485:CDS 25.0%
! AACTGTTCTATGAAATTCTT+GGG + chr8.1:75941972-75941991 None:intergenic 25.0%
! TAACTGTTCTATGAAATTCT+TGG + chr8.1:75941973-75941992 None:intergenic 25.0%
! TTTCTTCTTATAGTTCAAGA+GGG - chr8.1:75941402-75941421 MS.gene060485:CDS 25.0%
!! ATAATGGAAATTCTTCTTCA+AGG - chr8.1:75941942-75941961 MS.gene060485:CDS 25.0%
!! GGACATATTTGATAATACTA+AGG - chr8.1:75941670-75941689 MS.gene060485:CDS 25.0%
!! TCTTTCATGAAAACAGTTTT+TGG - chr8.1:75941359-75941378 MS.gene060485:CDS 25.0%
AACGACAAAAATGAAGAAAG+TGG - chr8.1:75942135-75942154 MS.gene060485:CDS 30.0%
ATCATTGTTGATCCAATCAA+TGG - chr8.1:75941275-75941294 MS.gene060485:CDS 30.0%
ATGTCAGGTTTCAAAACATA+TGG + chr8.1:75941443-75941462 None:intergenic 30.0%
ATTGATTGGATCAACAATGA+TGG + chr8.1:75941276-75941295 None:intergenic 30.0%
GAACTATAAGAAGAAACACT+AGG + chr8.1:75941398-75941417 None:intergenic 30.0%
GTTTCTTCTTATAGTTCAAG+AGG - chr8.1:75941401-75941420 MS.gene060485:CDS 30.0%
TGAATGAAGCAAAAGTTCTT+GGG - chr8.1:75941195-75941214 MS.gene060485:CDS 30.0%
TTGAATGAAGCAAAAGTTCT+TGG - chr8.1:75941194-75941213 MS.gene060485:CDS 30.0%
TTTGATAAGTGGAACATCTA+TGG - chr8.1:75941553-75941572 MS.gene060485:CDS 30.0%
! AAAATGAAGAAAGTGGCTTT+TGG - chr8.1:75942142-75942161 MS.gene060485:CDS 30.0%
! AAATGAAGAAAGTGGCTTTT+GGG - chr8.1:75942143-75942162 MS.gene060485:CDS 30.0%
! AAGGAGCATATTAAAGACAT+TGG - chr8.1:75941689-75941708 MS.gene060485:CDS 30.0%
!! TTATGTTTCTAGCATTACTC+AGG - chr8.1:75942018-75942037 MS.gene060485:CDS 30.0%
ACATATGGACAGCTATTTGA+AGG + chr8.1:75941428-75941447 None:intergenic 35.0%
AGAAACTAAGCTACAAGTTG+AGG - chr8.1:75942098-75942117 MS.gene060485:CDS 35.0%
ATTCGAAGAAGATCTTGTGA+TGG + chr8.1:75941867-75941886 None:intergenic 35.0%
CAACATCGTAAATAAGACCA+GGG + chr8.1:75941784-75941803 None:intergenic 35.0%
CATAGAACAGTTACCAATGT+TGG - chr8.1:75941980-75941999 MS.gene060485:CDS 35.0%
GAATGAAGCAAAAGTTCTTG+GGG - chr8.1:75941196-75941215 MS.gene060485:CDS 35.0%
GGGTTTATGTGACAATGTTA+AGG - chr8.1:75941094-75941113 MS.gene060485:CDS 35.0%
GTACAAATATCTTAGCTGCA+TGG - chr8.1:75941474-75941493 MS.gene060485:CDS 35.0%
! CAGTGAATACCAACTTGTTT+GGG + chr8.1:75942069-75942088 None:intergenic 35.0%
! TCAGTGAATACCAACTTGTT+TGG + chr8.1:75942070-75942089 None:intergenic 35.0%
!! AAATGTTCCTGTGATGGATT+TGG - chr8.1:75941502-75941521 MS.gene060485:CDS 35.0%
!! AATGTTCCTGTGATGGATTT+GGG - chr8.1:75941503-75941522 MS.gene060485:CDS 35.0%
!! TTTTGGGTATCTAACTTGGA+TGG - chr8.1:75942159-75942178 MS.gene060485:CDS 35.0%
AACAGTTACCAATGTTGGTG+AGG - chr8.1:75941985-75942004 MS.gene060485:CDS 40.0%
ATCCATCACAGGAACATTTG+TGG + chr8.1:75941501-75941520 None:intergenic 40.0%
CAGTGTTATCCCAAACAAGT+TGG - chr8.1:75942057-75942076 MS.gene060485:CDS 40.0%
CCAACATCGTAAATAAGACC+AGG + chr8.1:75941785-75941804 None:intergenic 40.0%
GATTGTTGTGTGTGAAGACA+AGG - chr8.1:75941139-75941158 MS.gene060485:CDS 40.0%
GCAGCTAAGATATTTGTACC+AGG + chr8.1:75941473-75941492 None:intergenic 40.0%
GGGTAGTTAAGATCCAAAGA+AGG + chr8.1:75941902-75941921 None:intergenic 40.0%
TAAGAAGAAACACTAGGTGC+TGG + chr8.1:75941392-75941411 None:intergenic 40.0%
TCCATCACAGGAACATTTGT+GGG + chr8.1:75941500-75941519 None:intergenic 40.0%
TTGACTGCTTCTCCATTGAT+TGG + chr8.1:75941290-75941309 None:intergenic 40.0%
TTGGATGGATATGAAGCATG+TGG - chr8.1:75942174-75942193 MS.gene060485:CDS 40.0%
! ACAGTTACCAATGTTGGTGA+GGG - chr8.1:75941986-75942005 MS.gene060485:CDS 40.0%
! TGATTGCTCTGAACCTTCTT+TGG - chr8.1:75941886-75941905 MS.gene060485:CDS 40.0%
! TGTTTGGGATAACACTGACA+CGG + chr8.1:75942054-75942073 None:intergenic 40.0%
!! ATGTTCCTGTGATGGATTTG+GGG - chr8.1:75941504-75941523 MS.gene060485:CDS 40.0%
!! CCTGGTCTTATTTACGATGT+TGG - chr8.1:75941782-75941801 MS.gene060485:CDS 40.0%
!! CTAGCATTACTCAGGTTGAA+GGG - chr8.1:75942026-75942045 MS.gene060485:CDS 40.0%
!! TCTAGCATTACTCAGGTTGA+AGG - chr8.1:75942025-75942044 MS.gene060485:CDS 40.0%
!! TGGCTTTTGGGTATCTAACT+TGG - chr8.1:75942155-75942174 MS.gene060485:CDS 40.0%
GTCGGCAATTATGACAACGT+CGG - chr8.1:75941649-75941668 MS.gene060485:CDS 45.0%
TGATTCCCCAAATCCATCAC+AGG + chr8.1:75941512-75941531 None:intergenic 45.0%
TGTGGTTAGAAGTCCAATCG+TGG - chr8.1:75942192-75942211 MS.gene060485:CDS 45.0%
TGTTTCTCCCTCACCAACAT+TGG + chr8.1:75941996-75942015 None:intergenic 45.0%
! AGCAGCAACTCCTTTTGCAT+TGG - chr8.1:75941724-75941743 MS.gene060485:CDS 45.0%
! GCAGCAACTCCTTTTGCATT+GGG - chr8.1:75941725-75941744 MS.gene060485:CDS 45.0%
!! GCACTTTTGAAAGGAGCACA+CGG - chr8.1:75941602-75941621 MS.gene060485:CDS 45.0%
AAACCTGACATCACTGCTCC+TGG - chr8.1:75941452-75941471 MS.gene060485:CDS 50.0%
ATGGCATGTCCTCATGTTGC+AGG - chr8.1:75941572-75941591 MS.gene060485:CDS 50.0%
CATAATTGCCGACCGAATCG+CGG + chr8.1:75941642-75941661 None:intergenic 50.0%
GCCCACAAATGTTCCTGTGA+TGG - chr8.1:75941496-75941515 MS.gene060485:CDS 50.0%
TGACCAGCTCCCAATGCAAA+AGG + chr8.1:75941737-75941756 None:intergenic 50.0%
! ACTCCTTTTGCATTGGGAGC+TGG - chr8.1:75941731-75941750 MS.gene060485:CDS 50.0%
! TCGAGTATTGCGACCACGAT+TGG + chr8.1:75942208-75942227 None:intergenic 50.0%
! TGAAAGGAGCACACGGTGAT+TGG - chr8.1:75941609-75941628 MS.gene060485:CDS 50.0%
CCAGGGTCGAGTGCTCTATT+TGG + chr8.1:75941767-75941786 None:intergenic 55.0%
GTACCAGGAGCAGTGATGTC+AGG + chr8.1:75941458-75941477 None:intergenic 55.0%
! CCAAATAGAGCACTCGACCC+TGG - chr8.1:75941764-75941783 MS.gene060485:CDS 55.0%
! TCCTCATGTTGCAGGTGTCG+CGG - chr8.1:75941580-75941599 MS.gene060485:CDS 55.0%
!! GGTGTCGCGGCACTTTTGAA+AGG - chr8.1:75941593-75941612 MS.gene060485:CDS 55.0%
ATTGGAGCCCTGCCGCGATT+CGG - chr8.1:75941627-75941646 MS.gene060485:CDS 60.0%
ATTGCCGACCGAATCGCGGC+AGG + chr8.1:75941638-75941657 None:intergenic 65.0%
GCCGCGACACCTGCAACATG+AGG + chr8.1:75941584-75941603 None:intergenic 65.0%
TTGCCGACCGAATCGCGGCA+GGG + chr8.1:75941637-75941656 None:intergenic 65.0%
!! GAGCCCTGCCGCGATTCGGT+CGG - chr8.1:75941631-75941650 MS.gene060485:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 75941092 75942231 75941092 ID=MS.gene060485
chr8.1 mRNA 75941092 75942231 75941092 ID=MS.gene060485.t1;Parent=MS.gene060485
chr8.1 exon 75941092 75942231 75941092 ID=MS.gene060485.t1.exon1;Parent=MS.gene060485.t1
chr8.1 CDS 75941092 75942231 75941092 ID=cds.MS.gene060485.t1;Parent=MS.gene060485.t1
Gene Sequence

>MS.gene060485

ATGGGTTTATGTGACAATGTTAAGGAATTGAAAAAAGTGAAAAACAAGATTGTTGTGTGTGAAGACAAGGACGAAGCTAACCTTTTTTATCAAGTCGATAATTTGAATGAAGCAAAAGTTCTTGGGGCTGTTTTTATTACAAATGTTACAAACATATACTATTCAGAAAATAGTTTTGCATCCATCATTGTTGATCCAATCAATGGAGAAGCAGTCAAAGCTTACATCAAGAGTTACTCTAAAAACTCTACTTCAAAAGCAAGTATGTCTTTCATGAAAACAGTTTTTGGAATTAAACCAGCACCTAGTGTTTCTTCTTATAGTTCAAGAGGGCCTTCAAATAGCTGTCCATATGTTTTGAAACCTGACATCACTGCTCCTGGTACAAATATCTTAGCTGCATGGCCCACAAATGTTCCTGTGATGGATTTGGGGAATCATAAGATCTTCAACAAGTTCAATTTGATAAGTGGAACATCTATGGCATGTCCTCATGTTGCAGGTGTCGCGGCACTTTTGAAAGGAGCACACGGTGATTGGAGCCCTGCCGCGATTCGGTCGGCAATTATGACAACGTCGGACATATTTGATAATACTAAGGAGCATATTAAAGACATTGGAAATGATAATAAAGCAGCAACTCCTTTTGCATTGGGAGCTGGTCATGTTAATCCAAATAGAGCACTCGACCCTGGTCTTATTTACGATGTTGGTGTACAAGATTATGTTAATCTTCTTTGTGCACTTAACTACTCACAAAAAAACATCACTGCCATCACAAGATCTTCTTCGAATGATTGCTCTGAACCTTCTTTGGATCTTAACTACCCTTCTTTTATTGCATATTTCAATAATGGAAATTCTTCTTCAAGGACAACCCAAGAATTTCATAGAACAGTTACCAATGTTGGTGAGGGAGAAACAATTTATGTTTCTAGCATTACTCAGGTTGAAGGGTTCCGTGTCAGTGTTATCCCAAACAAGTTGGTATTCACTGAGAAGAATGAGAAACTAAGCTACAAGTTGAGGATTGAAGTTGCAAGAACGACAAAAATGAAGAAAGTGGCTTTTGGGTATCTAACTTGGATGGATATGAAGCATGTGGTTAGAAGTCCAATCGTGGTCGCAATACTCGAATAG

Protein sequence

>MS.gene060485.t1

MGLCDNVKELKKVKNKIVVCEDKDEANLFYQVDNLNEAKVLGAVFITNVTNIYYSENSFASIIVDPINGEAVKAYIKSYSKNSTSKASMSFMKTVFGIKPAPSVSSYSSRGPSNSCPYVLKPDITAPGTNILAAWPTNVPVMDLGNHKIFNKFNLISGTSMACPHVAGVAALLKGAHGDWSPAAIRSAIMTTSDIFDNTKEHIKDIGNDNKAATPFALGAGHVNPNRALDPGLIYDVGVQDYVNLLCALNYSQKNITAITRSSSNDCSEPSLDLNYPSFIAYFNNGNSSSRTTQEFHRTVTNVGEGETIYVSSITQVEGFRVSVIPNKLVFTEKNEKLSYKLRIEVARTTKMKKVAFGYLTWMDMKHVVRSPIVVAILE