Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44594.t1 | GAU31197.1 | 54.3 | 490 | 143 | 4 | 95 | 559 | 1 | 434 | 7.20E-132 | 481.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44594.t1 | A0A2Z6NMX8 | 54.3 | 490 | 143 | 4 | 95 | 559 | 1 | 434 | 5.2e-132 | 481.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene44594 | 0.834124 | 3.59E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene44594 | 0.83155 | 1.57E-55 | -1.69E-46 |
| MS.gene058294 | MS.gene44594 | 0.8068 | 6.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44594.t1 | AT3G05850 | 34.848 | 132 | 83 | 3 | 216 | 345 | 207 | 337 | 6.94e-15 | 78.6 |
| MS.gene44594.t1 | AT1G06740 | 28.378 | 148 | 97 | 3 | 198 | 343 | 147 | 287 | 1.71e-13 | 73.9 |
Find 0 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGCTAATCAATAATTA+AGG | - | 43118:62804-62823 | None:intergenic | 15.0% |
| !! | CAAAAGAATTAAAAATGAAA+AGG | + | 43118:60939-60958 | MS.gene44594:CDS | 15.0% |
| !! | TAAACAAACAATTAATAGAA+TGG | - | 43118:61857-61876 | None:intergenic | 15.0% |
| !! | TATTAATTGGTATTCTTATA+TGG | - | 43118:60471-60490 | None:intergenic | 15.0% |
| !!! | ATTATTGATTAGCTTTATAT+TGG | + | 43118:62806-62825 | MS.gene44594:intron | 15.0% |
| !!! | TTATAGTTTTATATCATACT+TGG | + | 43118:61708-61727 | MS.gene44594:intron | 15.0% |
| !! | AAGAGATAAAACTAAAAAAC+AGG | + | 43118:62756-62775 | MS.gene44594:CDS | 20.0% |
| !! | ATACCTCTATCAATATAAAT+AGG | - | 43118:60793-60812 | None:intergenic | 20.0% |
| !! | ATATCAGAATCTGTATTAAT+TGG | - | 43118:60484-60503 | None:intergenic | 20.0% |
| !! | TAACTCTTAAACAACAATTA+GGG | + | 43118:60079-60098 | MS.gene44594:intron | 20.0% |
| !! | TTAACTCTTAAACAACAATT+AGG | + | 43118:60078-60097 | MS.gene44594:intron | 20.0% |
| !! | TTATAAATACTTGTGTAACA+GGG | + | 43118:61739-61758 | MS.gene44594:intron | 20.0% |
| !! | TTGTATAACAAAATCTCTAA+GGG | - | 43118:60905-60924 | None:intergenic | 20.0% |
| !!! | AACAAAATATGTGAGAATTT+TGG | - | 43118:60231-60250 | None:intergenic | 20.0% |
| !!! | AATGAAAAATGGATTTGTTA+GGG | + | 43118:61410-61429 | MS.gene44594:intron | 20.0% |
| !!! | ACAAAATATGTGAGAATTTT+GGG | - | 43118:60230-60249 | None:intergenic | 20.0% |
| !!! | TATCAACTTTTAATCACTTT+TGG | + | 43118:60204-60223 | MS.gene44594:intron | 20.0% |
| ! | AAAAATGAGAACAGTGATTA+CGG | + | 43118:60703-60722 | MS.gene44594:CDS | 25.0% |
| ! | CAATTAATTGATGGAAACAA+AGG | + | 43118:61508-61527 | MS.gene44594:intron | 25.0% |
| ! | CTTATAAATACTTGTGTAAC+AGG | + | 43118:61738-61757 | MS.gene44594:intron | 25.0% |
| ! | CTTGTATAACAAAATCTCTA+AGG | - | 43118:60906-60925 | None:intergenic | 25.0% |
| ! | CTTGTATTTCATTAGTAACT+TGG | - | 43118:62895-62914 | None:intergenic | 25.0% |
| ! | GTTTATGTTTGATAAATCCA+TGG | + | 43118:61989-62008 | MS.gene44594:intron | 25.0% |
| ! | GTTTCAGAAATATTTCCTTA+TGG | + | 43118:61775-61794 | MS.gene44594:CDS | 25.0% |
| ! | TAAAGCTTAGTTACATTAGT+TGG | - | 43118:61210-61229 | None:intergenic | 25.0% |
| ! | TATAAATACTTGTGTAACAG+GGG | + | 43118:61740-61759 | MS.gene44594:intron | 25.0% |
| ! | TATTTCATTAGTAACTTGGT+TGG | - | 43118:62891-62910 | None:intergenic | 25.0% |
| ! | TGTTTATGTCTCTTATCTAT+AGG | + | 43118:61871-61890 | MS.gene44594:intron | 25.0% |
| ! | TTAGAACAAGGTTTATTGTT+TGG | + | 43118:60856-60875 | MS.gene44594:CDS | 25.0% |
| ! | TTATGTATATGGAGAATAAC+AGG | + | 43118:60273-60292 | MS.gene44594:intron | 25.0% |
| ! | TTCAAAAGAGATATGAAGAA+GGG | + | 43118:62227-62246 | MS.gene44594:CDS | 25.0% |
| ! | TTCATTTGTATGTTATGTTG+AGG | + | 43118:60533-60552 | MS.gene44594:CDS | 25.0% |
| ! | TTTCAAAAGAGATATGAAGA+AGG | + | 43118:62226-62245 | MS.gene44594:CDS | 25.0% |
| !! | ATATTGATAGAGGTATGAAA+GGG | + | 43118:60797-60816 | MS.gene44594:CDS | 25.0% |
| !! | ATGAGTTTAGAGTAAAAGAT+GGG | + | 43118:62347-62366 | MS.gene44594:CDS | 25.0% |
| !! | CAATGAAAAATGGATTTGTT+AGG | + | 43118:61409-61428 | MS.gene44594:intron | 25.0% |
| !! | TATATTGATAGAGGTATGAA+AGG | + | 43118:60796-60815 | MS.gene44594:CDS | 25.0% |
| !! | TCTAATACTTTTCTGACTTT+AGG | - | 43118:62277-62296 | None:intergenic | 25.0% |
| !!! | AGAGATTTTGTTATACAAGA+GGG | + | 43118:60907-60926 | MS.gene44594:CDS | 25.0% |
| !!! | ATCCATTTTTCATTGCATTT+AGG | - | 43118:61404-61423 | None:intergenic | 25.0% |
| !!! | ATGAAAAATGGATTTGTTAG+GGG | + | 43118:61411-61430 | MS.gene44594:intron | 25.0% |
| !!! | TAGAGATTTTGTTATACAAG+AGG | + | 43118:60906-60925 | MS.gene44594:CDS | 25.0% |
| !!! | TTCTCACATATTTTGTTGTT+TGG | + | 43118:60234-60253 | MS.gene44594:intron | 25.0% |
| !!! | TTGTTGTTTGGATATGTTTA+AGG | + | 43118:60246-60265 | MS.gene44594:intron | 25.0% |
| AAAATGAGAACAGTGATTAC+GGG | + | 43118:60704-60723 | MS.gene44594:CDS | 30.0% | |
| AATCATGTCAGATATGCAAA+AGG | + | 43118:61651-61670 | MS.gene44594:CDS | 30.0% | |
| ACAAAAAACCTCTTAAACTC+TGG | - | 43118:61378-61397 | None:intergenic | 30.0% | |
| ACAAAAATCCAGAGTTTAAG+AGG | + | 43118:61367-61386 | MS.gene44594:intron | 30.0% | |
| ACTTATTATGCCGAAATTCA+CGG | - | 43118:62726-62745 | None:intergenic | 30.0% | |
| ATCCATGGAAAAACTTAGAA+AGG | + | 43118:62004-62023 | MS.gene44594:intron | 30.0% | |
| ATCTATCATAAAGCTAGAGT+TGG | + | 43118:61332-61351 | MS.gene44594:intron | 30.0% | |
| ATCTTATACAAGAATGCACA+TGG | - | 43118:61062-61081 | None:intergenic | 30.0% | |
| CTATTGTAGGAATCTAATTC+AGG | - | 43118:62562-62581 | None:intergenic | 30.0% | |
| GAATTAGATTCCTACAATAG+AGG | + | 43118:62562-62581 | MS.gene44594:CDS | 30.0% | |
| GAATTTCGGCATAATAAGTT+GGG | + | 43118:62727-62746 | MS.gene44594:CDS | 30.0% | |
| GGAAAAGTGAAATTAGAACA+AGG | + | 43118:60844-60863 | MS.gene44594:CDS | 30.0% | |
| GTATTTGTAGAAAAAGTTGC+AGG | + | 43118:62850-62869 | MS.gene44594:intron | 30.0% | |
| GTGCCTATTTATATTGATAG+AGG | + | 43118:60787-60806 | MS.gene44594:CDS | 30.0% | |
| TAGCTGTAGCAATTAATTGA+TGG | + | 43118:61499-61518 | MS.gene44594:intron | 30.0% | |
| TATTTCCTTATGGCAAACAT+AGG | + | 43118:61785-61804 | MS.gene44594:CDS | 30.0% | |
| TCACGTAACAAATAATGTGT+CGG | + | 43118:62118-62137 | MS.gene44594:intron | 30.0% | |
| TGAATTTCGGCATAATAAGT+TGG | + | 43118:62726-62745 | MS.gene44594:CDS | 30.0% | |
| TGCCTAAATGCAATGAAAAA+TGG | + | 43118:61399-61418 | MS.gene44594:intron | 30.0% | |
| TTGTTTGGATATGTTTAAGG+TGG | + | 43118:60249-60268 | MS.gene44594:intron | 30.0% | |
| ! | CAGAGTGAAATGAATTTTGA+TGG | - | 43118:59986-60005 | None:intergenic | 30.0% |
| ! | GAAAGAAGACAATTTTGTGA+TGG | + | 43118:62171-62190 | MS.gene44594:intron | 30.0% |
| ! | GATGAGTTTAGAGTAAAAGA+TGG | + | 43118:62346-62365 | MS.gene44594:CDS | 30.0% |
| ! | TGCTTCTAAGTACACATTTT+TGG | + | 43118:61943-61962 | MS.gene44594:intron | 30.0% |
| ! | TGTTTGGATATGTTTAAGGT+GGG | + | 43118:60250-60269 | MS.gene44594:intron | 30.0% |
| ! | TTATTTGACCATGTTTCTGA+TGG | + | 43118:60823-60842 | MS.gene44594:CDS | 30.0% |
| !! | TTTAAGGTGGGTTATGTATA+TGG | + | 43118:60262-60281 | MS.gene44594:intron | 30.0% |
| !!! | ACATTTTTGGAATGTTGCAA+TGG | + | 43118:61956-61975 | MS.gene44594:intron | 30.0% |
| !!! | TCCTTTATTTTGTTGAGGTT+CGG | - | 43118:60638-60657 | None:intergenic | 30.0% |
| AAACAAGAAGCAAGAGACAA+GGG | - | 43118:60053-60072 | None:intergenic | 35.0% | |
| AAGAGTAATACTCCACCATA+TGG | - | 43118:61480-61499 | None:intergenic | 35.0% | |
| AAGGTCAGACAAGATAGTAA+AGG | + | 43118:61243-61262 | MS.gene44594:CDS | 35.0% | |
| ACATATTCTACATTGTGCAG+GGG | + | 43118:60297-60316 | MS.gene44594:intron | 35.0% | |
| ACTACTAAATGTGCTTCAGA+TGG | + | 43118:60970-60989 | MS.gene44594:CDS | 35.0% | |
| AGTTACCTATGTTTGCCATA+AGG | - | 43118:61793-61812 | None:intergenic | 35.0% | |
| ATGTCAGATATGCAAAAGGT+TGG | + | 43118:61655-61674 | MS.gene44594:intron | 35.0% | |
| ATGTGTAAAGTCACATATGC+TGG | + | 43118:62319-62338 | MS.gene44594:CDS | 35.0% | |
| ATTTCCCAACCAGTTGTTAA+AGG | - | 43118:62147-62166 | None:intergenic | 35.0% | |
| CACATATTCTACATTGTGCA+GGG | + | 43118:60296-60315 | MS.gene44594:intron | 35.0% | |
| CATCCATCAATCTTAAACCA+AGG | - | 43118:61444-61463 | None:intergenic | 35.0% | |
| CATGTTTCCAATTGCATTTG+CGG | + | 43118:61531-61550 | MS.gene44594:intron | 35.0% | |
| CGACGATATTTGTAGATTGT+TGG | + | 43118:60378-60397 | MS.gene44594:CDS | 35.0% | |
| GAACCTCAACAAAATAAAGG+AGG | + | 43118:60637-60656 | MS.gene44594:CDS | 35.0% | |
| GACTCACTAGTTACTATTTC+AGG | - | 43118:60592-60611 | None:intergenic | 35.0% | |
| GAGTATGTGATTGTGGTTAT+TGG | + | 43118:62401-62420 | MS.gene44594:intron | 35.0% | |
| GTAACACAAACTGTAAGTTG+TGG | - | 43118:62518-62537 | None:intergenic | 35.0% | |
| TAGGAATCTAATTCAGGCAT+GGG | - | 43118:62556-62575 | None:intergenic | 35.0% | |
| TATGTGATTGTGGTTATTGG+AGG | + | 43118:62404-62423 | MS.gene44594:intron | 35.0% | |
| TCAAGATACGAGTAATAGTC+AGG | - | 43118:60352-60371 | None:intergenic | 35.0% | |
| TGCATAAAAGAGAGCTAATG+TGG | + | 43118:62465-62484 | MS.gene44594:intron | 35.0% | |
| TGGTTGAGTCTATTACTTGT+AGG | + | 43118:62191-62210 | MS.gene44594:intron | 35.0% | |
| TGTCACCTAAAATGACCATA+TGG | + | 43118:61462-61481 | MS.gene44594:intron | 35.0% | |
| TGTTGTAATCCAAGTAGATG+TGG | - | 43118:61103-61122 | None:intergenic | 35.0% | |
| TTAGACACTTCAATGCAAGA+TGG | + | 43118:62292-62311 | MS.gene44594:CDS | 35.0% | |
| TTATGGGAAAATTGATCCTC+TGG | + | 43118:62588-62607 | MS.gene44594:CDS | 35.0% | |
| ! | ATCTTGTATGTTTTCCCATC+TGG | - | 43118:61027-61046 | None:intergenic | 35.0% |
| ! | CACCTTTCTAAGTTTTTCCA+TGG | - | 43118:62009-62028 | None:intergenic | 35.0% |
| ! | GTCTATTACTTGTAGGTTGA+TGG | + | 43118:62198-62217 | MS.gene44594:intron | 35.0% |
| ! | TGAAAGACCCAAAAGTATGT+GGG | + | 43118:62061-62080 | MS.gene44594:intron | 35.0% |
| ! | TTTTTCCATCGTTTGTCATC+TGG | + | 43118:60161-60180 | MS.gene44594:intron | 35.0% |
| !! | CATTGAGTTCTGTTTCTGAA+TGG | + | 43118:61611-61630 | MS.gene44594:intron | 35.0% |
| !! | TCACTTTTCCATCAGAAACA+TGG | - | 43118:60834-60853 | None:intergenic | 35.0% |
| !!! | TTTATTTTGTTGAGGTTCGG+CGG | - | 43118:60635-60654 | None:intergenic | 35.0% |
| AAGAGATATGAAGAAGGGTG+TGG | + | 43118:62232-62251 | MS.gene44594:CDS | 40.0% | |
| ACAAACCAGATGACAAACGA+TGG | - | 43118:60169-60188 | None:intergenic | 40.0% | |
| ACTCAAATGCCACATCTACT+TGG | + | 43118:61091-61110 | MS.gene44594:CDS | 40.0% | |
| AGATTGTTGGATATTCCCAC+TGG | + | 43118:60391-60410 | MS.gene44594:CDS | 40.0% | |
| AGGTTTATTGTTTGGCGATG+TGG | + | 43118:60864-60883 | MS.gene44594:CDS | 40.0% | |
| ATCATAGACATCATCTCGCA+CGG | + | 43118:60136-60155 | MS.gene44594:intron | 40.0% | |
| ATGCTCGCATAGCTCATATT+TGG | - | 43118:61153-61172 | None:intergenic | 40.0% | |
| CAAGAGTTGTTGGATAGGTA+TGG | + | 43118:61177-61196 | MS.gene44594:CDS | 40.0% | |
| CACCTAAAATGACCATATGG+TGG | + | 43118:61465-61484 | MS.gene44594:intron | 40.0% | |
| CCTACAATAGAGGCTCTTAT+GGG | + | 43118:62572-62591 | MS.gene44594:CDS | 40.0% | |
| GAAACAAGAAGCAAGAGACA+AGG | - | 43118:60054-60073 | None:intergenic | 40.0% | |
| GAGATGATGTCTATGATGAC+TGG | - | 43118:60133-60152 | None:intergenic | 40.0% | |
| GAGTCCTTTAACAACTGGTT+GGG | + | 43118:62140-62159 | MS.gene44594:intron | 40.0% | |
| GCACATATTCTACATTGTGC+AGG | + | 43118:60295-60314 | MS.gene44594:intron | 40.0% | |
| GCCGAACCTCAACAAAATAA+AGG | + | 43118:60634-60653 | MS.gene44594:CDS | 40.0% | |
| GCTTTATCGTGCAAGAAACA+AGG | + | 43118:61224-61243 | MS.gene44594:CDS | 40.0% | |
| GGTAGTTGAAATTGAGTGCA+AGG | + | 43118:61552-61571 | MS.gene44594:intron | 40.0% | |
| GGTATTCTTATATGGCTACC+TGG | - | 43118:60463-60482 | None:intergenic | 40.0% | |
| GTAGGAATCTAATTCAGGCA+TGG | - | 43118:62557-62576 | None:intergenic | 40.0% | |
| TCAACTACCGCAAATGCAAT+TGG | - | 43118:61541-61560 | None:intergenic | 40.0% | |
| TCCTACAATAGAGGCTCTTA+TGG | + | 43118:62571-62590 | MS.gene44594:CDS | 40.0% | |
| TGAGTCAAGAGTTGTTGGAT+AGG | + | 43118:61172-61191 | MS.gene44594:CDS | 40.0% | |
| TGATGCAAGAAGATCAAGCA+CGG | + | 43118:62684-62703 | MS.gene44594:CDS | 40.0% | |
| TGGCAGAAAGAAATGGAGAA+AGG | - | 43118:60439-60458 | None:intergenic | 40.0% | |
| TTCTTATATGGCTACCTGGA+TGG | - | 43118:60459-60478 | None:intergenic | 40.0% | |
| ! | AGAGATATGAAGAAGGGTGT+GGG | + | 43118:62233-62252 | MS.gene44594:CDS | 40.0% |
| ! | AGGCCTTGGTTTAAGATTGA+TGG | + | 43118:61438-61457 | MS.gene44594:intron | 40.0% |
| ! | ATGTCTAGCCCACATACTTT+TGG | - | 43118:62072-62091 | None:intergenic | 40.0% |
| ! | CCTCTCTTCCTATTAGTTCT+CGG | - | 43118:62637-62656 | None:intergenic | 40.0% |
| ! | CTAGTGAGTCTGATGATGAA+TGG | + | 43118:60602-60621 | MS.gene44594:CDS | 40.0% |
| ! | GATGTGGCATTTGAGTTCTT+TGG | - | 43118:61087-61106 | None:intergenic | 40.0% |
| ! | GTGAAAGACCCAAAAGTATG+TGG | + | 43118:62060-62079 | MS.gene44594:intron | 40.0% |
| ! | TATGTTTTCCCATCTGGTGT+AGG | - | 43118:61021-61040 | None:intergenic | 40.0% |
| ! | TCTGGATTTTTGTTGAGCCT+GGG | - | 43118:61360-61379 | None:intergenic | 40.0% |
| ! | TGTCTAGCCCACATACTTTT+GGG | - | 43118:62071-62090 | None:intergenic | 40.0% |
| ! | TTGATCCTCTGGAAATGAAG+AGG | + | 43118:62599-62618 | MS.gene44594:CDS | 40.0% |
| !! | ATGGATTTGTTAGGGGTTGT+AGG | + | 43118:61418-61437 | MS.gene44594:intron | 40.0% |
| !! | CTCCACCATATGGTCATTTT+AGG | - | 43118:61470-61489 | None:intergenic | 40.0% |
| !!! | TCGCCTCCTTTATTTTGTTG+AGG | - | 43118:60643-60662 | None:intergenic | 40.0% |
| AAAAAGTTGCAGGTCAGACG+TGG | + | 43118:62860-62879 | MS.gene44594:CDS | 45.0% | |
| AAATGAAGAGGCTTCCTGGA+AGG | + | 43118:62611-62630 | MS.gene44594:CDS | 45.0% | |
| AAATTGAGTGCAAGGACTCG+TGG | + | 43118:61560-61579 | MS.gene44594:intron | 45.0% | |
| ACCTGGATGGCAGAAAGAAA+TGG | - | 43118:60446-60465 | None:intergenic | 45.0% | |
| ACGTGATCAGATTTGCACTC+AGG | - | 43118:62104-62123 | None:intergenic | 45.0% | |
| ACTGGATGCAACGATGAAAG+AGG | + | 43118:60409-60428 | MS.gene44594:CDS | 45.0% | |
| ACTTAGAAAGGTGAGCAACG+AGG | + | 43118:62016-62035 | MS.gene44594:intron | 45.0% | |
| AGATCAAGCACGGTTAGATG+TGG | + | 43118:62694-62713 | MS.gene44594:CDS | 45.0% | |
| AGGGCTAGAGTATGTGATTG+TGG | + | 43118:62394-62413 | MS.gene44594:intron | 45.0% | |
| CACCTTTGTGGTGAACTTGA+GGG | + | 43118:62375-62394 | MS.gene44594:CDS | 45.0% | |
| CATGAACATGCATGCTTGCA+TGG | - | 43118:62442-62461 | None:intergenic | 45.0% | |
| CCCATAAGAGCCTCTATTGT+AGG | - | 43118:62575-62594 | None:intergenic | 45.0% | |
| CCGAGAACTAATAGGAAGAG+AGG | + | 43118:62634-62653 | MS.gene44594:CDS | 45.0% | |
| CGTGATCAGATTTGCACTCA+GGG | - | 43118:62103-62122 | None:intergenic | 45.0% | |
| CTACTCAGTTGCACTTGACT+TGG | - | 43118:62923-62942 | None:intergenic | 45.0% | |
| CTTCAGATGGTTGTTCTTGG+CGG | + | 43118:60983-61002 | MS.gene44594:CDS | 45.0% | |
| CTTTCATCGTTGCATCCAGT+GGG | - | 43118:60409-60428 | None:intergenic | 45.0% | |
| GAGCATGAGTCAAGAGTTGT+TGG | + | 43118:61167-61186 | MS.gene44594:CDS | 45.0% | |
| GATCAAGCACGGTTAGATGT+GGG | + | 43118:62695-62714 | MS.gene44594:CDS | 45.0% | |
| GGAGTCCTTTAACAACTGGT+TGG | + | 43118:62139-62158 | MS.gene44594:intron | 45.0% | |
| GTGCTTCAGATGGTTGTTCT+TGG | + | 43118:60980-60999 | MS.gene44594:CDS | 45.0% | |
| TAAAGCTAGAGTTGGAACCC+AGG | + | 43118:61340-61359 | MS.gene44594:intron | 45.0% | |
| TCAGGATCAACATCTCGTAG+TGG | - | 43118:60334-60353 | None:intergenic | 45.0% | |
| TCCATTTCTTTCTGCCATCC+AGG | + | 43118:60442-60461 | MS.gene44594:CDS | 45.0% | |
| TCTTTCATCGTTGCATCCAG+TGG | - | 43118:60410-60429 | None:intergenic | 45.0% | |
| TGTCGGAGTCCTTTAACAAC+TGG | + | 43118:62135-62154 | MS.gene44594:intron | 45.0% | |
| ! | AAAGCAGAAAAAGCGCAAGC+TGG | - | 43118:61297-61316 | None:intergenic | 45.0% |
| ! | AGATGGGTTTACCACCTTTG+TGG | + | 43118:62363-62382 | MS.gene44594:CDS | 45.0% |
| ! | CTCTGGATTTTTGTTGAGCC+TGG | - | 43118:61361-61380 | None:intergenic | 45.0% |
| AGCCCTCAAGTTCACCACAA+AGG | - | 43118:62380-62399 | None:intergenic | 50.0% | |
| ATGCCTCTCCTACACCAGAT+GGG | + | 43118:61010-61029 | MS.gene44594:CDS | 50.0% | |
| CCACCTTTGTGGTGAACTTG+AGG | + | 43118:62374-62393 | MS.gene44594:CDS | 50.0% | |
| CCTCAAGTTCACCACAAAGG+TGG | - | 43118:62377-62396 | None:intergenic | 50.0% | |
| CTGGAAATGAAGAGGCTTCC+TGG | + | 43118:62607-62626 | MS.gene44594:CDS | 50.0% | |
| CTGGAAGGCCGAGAACTAAT+AGG | + | 43118:62626-62645 | MS.gene44594:CDS | 50.0% | |
| CTTGCATCATGTGAAGCTGC+TGG | - | 43118:62673-62692 | None:intergenic | 50.0% | |
| GGAAGCCTCTTCATTTCCAG+AGG | - | 43118:62607-62626 | None:intergenic | 50.0% | |
| GTGGGAACTGCCGTGAATTT+CGG | + | 43118:62713-62732 | MS.gene44594:CDS | 50.0% | |
| TGAGCAACGAGGCTGCAAAT+TGG | + | 43118:62027-62046 | MS.gene44594:intron | 50.0% | |
| TTGTTAGGGGTTGTAGGCCT+TGG | + | 43118:61424-61443 | MS.gene44594:intron | 50.0% | |
| TTTCCCATCTGGTGTAGGAG+AGG | - | 43118:61016-61035 | None:intergenic | 50.0% | |
| ! | CTATTAGTTCTCGGCCTTCC+AGG | - | 43118:62628-62647 | None:intergenic | 50.0% |
| !! | AGAGGCAAGGTGTGTTTTGG+TGG | - | 43118:60028-60047 | None:intergenic | 50.0% |
| !!! | GGTGTGTTTTGGTGGAAAGC+TGG | - | 43118:60020-60039 | None:intergenic | 50.0% |
| AAGCAAGAGACAAGGGCGAG+AGG | - | 43118:60046-60065 | None:intergenic | 55.0% | |
| CATGCCTCTCCTACACCAGA+TGG | + | 43118:61009-61028 | MS.gene44594:CDS | 55.0% | |
| ! | CAGAAAAAGCGCAAGCTGGC+AGG | - | 43118:61293-61312 | None:intergenic | 55.0% |
| ! | GCGAGAGGCAAGGTGTGTTT+TGG | - | 43118:60031-60050 | None:intergenic | 55.0% |
| AGAGACAAGGGCGAGAGGCA+AGG | - | 43118:60041-60060 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43118 | gene | 59972 | 62958 | 59972 | ID=MS.gene44594 |
| 43118 | mRNA | 59972 | 62958 | 59972 | ID=MS.gene44594.t1;Parent=MS.gene44594 |
| 43118 | exon | 59972 | 60068 | 59972 | ID=MS.gene44594.t1.exon1;Parent=MS.gene44594.t1 |
| 43118 | CDS | 59972 | 60068 | 59972 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| 43118 | exon | 60317 | 61264 | 60317 | ID=MS.gene44594.t1.exon2;Parent=MS.gene44594.t1 |
| 43118 | CDS | 60317 | 61264 | 60317 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| 43118 | exon | 61638 | 61672 | 61638 | ID=MS.gene44594.t1.exon3;Parent=MS.gene44594.t1 |
| 43118 | CDS | 61638 | 61672 | 61638 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| 43118 | exon | 61760 | 61806 | 61760 | ID=MS.gene44594.t1.exon4;Parent=MS.gene44594.t1 |
| 43118 | CDS | 61760 | 61806 | 61760 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| 43118 | exon | 62213 | 62402 | 62213 | ID=MS.gene44594.t1.exon5;Parent=MS.gene44594.t1 |
| 43118 | CDS | 62213 | 62402 | 62213 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| 43118 | exon | 62475 | 62777 | 62475 | ID=MS.gene44594.t1.exon6;Parent=MS.gene44594.t1 |
| 43118 | CDS | 62475 | 62777 | 62475 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| 43118 | exon | 62860 | 62958 | 62860 | ID=MS.gene44594.t1.exon7;Parent=MS.gene44594.t1 |
| 43118 | CDS | 62860 | 62958 | 62860 | ID=cds.MS.gene44594.t1;Parent=MS.gene44594.t1 |
| Gene Sequence |
| Protein sequence |
