AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44651

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44651.t1 MTR_7g014330 91.048 458 41 0 1 458 1 458 0.0 871
MS.gene44651.t1 MTR_7g014230 88.987 454 50 0 2 455 4 457 0.0 841
MS.gene44651.t1 MTR_7g014250 87.118 458 59 0 1 458 1 458 0.0 837
MS.gene44651.t1 MTR_7g014360 82.216 388 49 1 71 458 21 388 0.0 652
MS.gene44651.t1 MTR_7g014310 69.162 334 49 2 108 441 29 308 4.34e-157 447
MS.gene44651.t1 MTR_6g015815 47.650 468 221 10 2 458 8 462 4.04e-146 425
MS.gene44651.t1 MTR_6g015850 47.516 463 224 9 3 458 9 459 7.34e-143 417
MS.gene44651.t1 MTR_6g015830 47.966 467 219 11 3 458 9 462 1.57e-142 416
MS.gene44651.t1 MTR_6g015320 46.983 464 222 12 3 458 9 456 3.96e-137 402
MS.gene44651.t1 MTR_6g015315 46.537 462 228 10 3 458 6 454 8.21e-136 399
MS.gene44651.t1 MTR_7g014610 41.263 475 254 11 3 458 9 477 6.90e-111 336
MS.gene44651.t1 MTR_7g014200 41.365 469 254 12 3 458 10 470 1.44e-110 335
MS.gene44651.t1 MTR_7g014160 40.506 474 254 14 3 457 10 474 3.32e-106 323
MS.gene44651.t1 MTR_7g013850 39.262 461 241 13 27 457 30 481 1.34e-98 304
MS.gene44651.t1 MTR_7g014620 38.926 447 238 10 22 457 11 433 1.12e-89 280
MS.gene44651.t1 MTR_3g028210 35.095 473 271 10 3 456 9 464 2.31e-87 275
MS.gene44651.t1 MTR_2g089765 37.924 472 261 13 3 452 17 478 3.98e-87 275
MS.gene44651.t1 MTR_8g012750 35.924 476 276 12 3 456 4 472 4.02e-81 259
MS.gene44651.t1 MTR_7g015860 35.789 475 256 12 3 452 6 456 1.17e-80 257
MS.gene44651.t1 MTR_2g089670 37.416 449 247 13 22 452 41 473 9.05e-79 253
MS.gene44651.t1 MTR_6g015310 40.884 362 155 10 76 433 25 331 9.53e-78 246
MS.gene44651.t1 MTR_2g089650 33.958 480 269 15 3 458 10 465 2.16e-73 238
MS.gene44651.t1 MTR_3g087640 34.560 489 259 16 3 456 10 472 2.24e-73 239
MS.gene44651.t1 MTR_2g089755 34.066 455 264 13 26 458 37 477 6.09e-73 238
MS.gene44651.t1 MTR_2g089735 33.937 442 253 11 39 458 39 463 3.14e-72 235
MS.gene44651.t1 MTR_7g014205 78.626 131 17 1 295 425 1 120 5.06e-68 213
MS.gene44651.t1 MTR_7g014630 43.682 277 137 6 3 267 10 279 1.14e-67 220
MS.gene44651.t1 MTR_7g014210 82.609 115 19 1 314 427 24 138 1.14e-57 187
MS.gene44651.t1 MTR_2g089665 31.591 440 186 12 1 431 1 334 1.10e-50 175
MS.gene44651.t1 MTR_7g014180 47.929 169 82 2 3 168 8 173 6.16e-44 152
MS.gene44651.t1 MTR_3g435300 36.131 274 147 8 3 262 4 263 4.27e-41 148
MS.gene44651.t1 MTR_7g014340 92.958 71 5 0 1 71 1 71 6.76e-39 136
MS.gene44651.t1 MTR_7g014670 37.895 190 112 4 272 456 71 259 6.34e-34 128
MS.gene44651.t1 MTR_7g014220 88.525 61 7 0 14 74 6 66 1.82e-30 113
MS.gene44651.t1 MTR_0190s0020 29.372 446 228 21 23 437 26 415 1.83e-23 102
MS.gene44651.t1 MTR_4g094838 25.728 412 228 17 26 413 28 385 2.95e-22 99.0
MS.gene44651.t1 MTR_3g026310 27.523 436 246 20 10 413 6 403 6.88e-21 95.1
MS.gene44651.t1 MTR_2g064495 23.585 424 278 14 42 452 39 429 9.54e-21 94.7
MS.gene44651.t1 MTR_8g075610 26.357 387 224 17 42 409 30 374 1.01e-20 94.4
MS.gene44651.t1 MTR_7g085930 25.229 436 262 12 57 456 54 461 5.99e-20 92.4
MS.gene44651.t1 MTR_2g105330 23.585 424 278 14 42 452 39 429 7.31e-20 92.0
MS.gene44651.t1 MTR_3g088420 25.463 432 249 17 8 413 4 388 9.41e-20 91.7
MS.gene44651.t1 MTR_8g096530 26.966 356 222 13 62 410 59 383 2.12e-19 90.5
MS.gene44651.t1 MTR_4g094842 27.681 401 228 17 53 427 45 409 2.27e-19 90.5
MS.gene44651.t1 MTR_4g094835 23.301 412 248 16 26 413 32 399 2.78e-19 90.5
MS.gene44651.t1 MTR_3g049150 25.916 382 224 13 56 409 49 399 6.29e-19 89.4
MS.gene44651.t1 MTR_3g098980 26.055 403 252 15 62 453 66 433 6.29e-19 89.4
MS.gene44651.t1 MTR_3g026950 26.683 401 230 16 40 409 36 403 1.97e-18 87.8
MS.gene44651.t1 MTR_7g026860 25.829 422 231 17 20 409 18 389 2.45e-18 87.4
MS.gene44651.t1 MTR_4g022825 24.519 416 254 15 20 413 18 395 5.35e-18 86.3
MS.gene44651.t1 MTR_8g079710 25.547 411 241 16 26 413 29 397 7.90e-18 85.9
MS.gene44651.t1 MTR_7g086000 25.783 415 271 12 62 456 60 457 1.81e-17 85.1
MS.gene44651.t1 MTR_4g094828 27.251 411 251 19 20 413 23 402 6.05e-17 83.2
MS.gene44651.t1 MTR_7g085990 25.610 328 199 7 56 364 49 350 6.99e-17 83.2
MS.gene44651.t1 MTR_3g102020 26.619 417 219 20 29 408 32 398 1.31e-16 82.4
MS.gene44651.t1 MTR_4g022800 27.446 419 240 19 20 413 18 397 8.10e-16 79.7
MS.gene44651.t1 MTR_3g101930 25.661 378 242 13 48 412 56 407 1.06e-15 79.3
MS.gene44651.t1 MTR_4g022720 25.000 408 257 13 20 413 18 390 2.90e-15 78.2
MS.gene44651.t1 MTR_4g127650 23.889 360 215 11 24 364 29 348 5.96e-15 77.0
MS.gene44651.t1 MTR_7g027175 25.212 353 230 12 62 409 68 391 6.38e-15 77.0
MS.gene44651.t1 MTR_5g026320 24.171 422 268 17 26 433 41 424 5.81e-13 70.9
MS.gene44651.t1 MTR_3g435290 34.146 123 76 3 337 458 1 119 1.32e-12 64.7
MS.gene44651.t1 MTR_4g022760 26.131 398 216 18 10 377 6 355 1.68e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44651.t1 AT3G29670 39.615 467 250 14 4 458 5 451 5.20e-98 301
MS.gene44651.t1 AT3G29635 40.089 449 232 12 24 456 27 454 3.37e-96 297
MS.gene44651.t1 AT5G39090 39.009 464 247 12 5 456 8 447 1.55e-95 295
MS.gene44651.t1 AT5G61160 36.864 472 259 12 3 458 4 452 1.81e-91 285
MS.gene44651.t1 AT5G39050 38.347 472 258 14 3 456 11 467 1.52e-90 283
MS.gene44651.t1 AT5G39080 36.774 465 264 12 4 452 7 457 4.66e-90 281
MS.gene44651.t1 AT3G29680 40.091 439 235 14 24 452 23 443 2.75e-88 276
MS.gene44651.t1 AT3G29590 36.966 468 251 12 4 456 10 448 5.88e-88 276
MS.gene44651.t1 AT1G03940 35.924 476 263 15 3 456 9 464 1.42e-83 265
MS.gene44651.t1 AT1G03495 34.722 360 199 11 1 340 1 344 3.15e-58 195
MS.gene44651.t1 AT3G29720 35.885 209 110 6 99 299 26 218 1.06e-28 113
MS.gene44651.t1 AT5G23940 25.446 448 262 14 3 419 4 410 2.95e-23 102
MS.gene44651.t1 AT2G19070 25.670 448 270 17 39 456 37 451 5.10e-22 98.6
MS.gene44651.t1 AT5G48930 23.542 463 291 19 9 448 4 426 3.15e-18 87.0
MS.gene44651.t1 AT1G31490 24.181 397 252 13 23 409 26 383 4.36e-18 86.7
MS.gene44651.t1 AT3G29690 33.562 146 89 4 312 455 38 177 1.62e-16 77.8
MS.gene44651.t1 AT5G67160 23.614 415 257 10 10 409 13 382 2.01e-16 81.6
MS.gene44651.t1 AT3G47170 26.502 283 170 10 62 328 70 330 2.96e-16 81.3
MS.gene44651.t1 AT5G67150 23.628 419 271 12 10 412 13 398 4.13e-16 80.9
MS.gene44651.t1 AT5G38130 24.146 410 259 15 29 423 52 424 6.74e-14 73.9
MS.gene44651.t1 AT4G31910 23.343 347 222 12 42 368 46 368 3.83e-13 71.6
MS.gene44651.t1 AT5G07850 23.545 378 245 11 50 413 58 405 4.80e-13 71.2
MS.gene44651.t1 AT1G24430 22.398 442 272 14 26 450 29 416 5.70e-13 70.9
MS.gene44651.t1 AT1G28680 22.903 310 202 7 62 364 62 341 3.23e-12 68.6
MS.gene44651.t1 AT1G28680 22.903 310 202 7 62 364 62 341 4.73e-12 67.8

Find 73 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGATTTATTTGGAGAAAA+TGG 0.161624 7.3:+83272453 MS.gene44651:CDS
GTTAAAACAAGTGATTTATT+TGG 0.208890 7.3:+83272444 MS.gene44651:CDS
AGAAAGGGATTGTTTGAGTT+TGG 0.214942 7.3:-83271614 None:intergenic
GCTGATTTCAATCATTTATC+TGG 0.253026 7.3:+83271757 MS.gene44651:CDS
TGGTCATCATGGTTACTTAA+AGG 0.264063 7.3:+83272552 MS.gene44651:CDS
GTTCCAGAAGATTCATTTAG+AGG 0.266808 7.3:+83272156 MS.gene44651:CDS
GAAACCATTTCAACTTTCTT+TGG 0.269632 7.3:-83272660 None:intergenic
GTGCTATAAACCTCAAATTT+AGG 0.277190 7.3:-83272618 None:intergenic
TTACTTTCTTTGACATACTA+TGG 0.279036 7.3:+83271512 MS.gene44651:CDS
CCAATTGAAAATCCGTAGTT+TGG 0.297340 7.3:-83271880 None:intergenic
CCAAACCATTAAGCTTCTAT+TGG 0.298491 7.3:-83272124 None:intergenic
AACAACCAATAGAAGCTTAA+TGG 0.299594 7.3:+83272119 MS.gene44651:CDS
ATTATTTCAATTATCTCGTT+TGG 0.307673 7.3:+83272179 MS.gene44651:CDS
CAATAGAAGCTTAATGGTTT+GGG 0.310409 7.3:+83272125 MS.gene44651:CDS
AGGCAAAATATTTGAGTGAT+TGG 0.318923 7.3:+83272082 MS.gene44651:CDS
TCTCTTTCTGATTGTAGAAA+TGG 0.323114 7.3:+83272705 MS.gene44651:CDS
CCAATAGAAGCTTAATGGTT+TGG 0.323690 7.3:+83272124 MS.gene44651:CDS
AATCCTCTAAATGAATCTTC+TGG 0.330893 7.3:-83272159 None:intergenic
TTTGGATATTGAAAAGCTTA+AGG 0.336799 7.3:+83272197 MS.gene44651:CDS
ACATACTTTGGAAATTGTAT+TGG 0.352174 7.3:+83272405 MS.gene44651:CDS
GAGGTTTATAGCACTGATTT+TGG 0.354064 7.3:+83272627 MS.gene44651:CDS
GAAAGGGATTGTTTGAGTTT+GGG 0.362666 7.3:-83271613 None:intergenic
ACATGAACAAGCTTCTGTTT+TGG 0.364822 7.3:+83271837 MS.gene44651:CDS
CCGATTCCTGCAACATACTT+TGG 0.373253 7.3:+83272393 MS.gene44651:CDS
TCATGTGAAATATTCAAGTT+AGG 0.378648 7.3:-83271820 None:intergenic
AATTCACTTGTCAACATTTG+TGG 0.379172 7.3:+83272266 MS.gene44651:CDS
ATTGGTTTGTGAGAATCATT+AGG 0.380290 7.3:-83271682 None:intergenic
CCTTTGATGAATTTGATGAT+TGG 0.382399 7.3:-83271700 None:intergenic
TAGAAGAAAATTCTTTGAAC+AGG 0.387117 7.3:-83271547 None:intergenic
CAATTTCCAAAGTATGTTGC+AGG 0.392215 7.3:-83272399 None:intergenic
TAGGTTTGAATATCGATTGC+AGG 0.392519 7.3:+83272355 MS.gene44651:CDS
ATTTGTAGTGTCAAAACAAA+AGG 0.406667 7.3:+83272221 MS.gene44651:CDS
CCAAAGTATGTTGCAGGAAT+CGG 0.415495 7.3:-83272393 None:intergenic
TGCTGGTTCACCTAAATTTG+AGG 0.418931 7.3:+83272608 MS.gene44651:CDS
TGAAGTGTTGAGTGAAGCTT+TGG 0.425405 7.3:+83272491 MS.gene44651:CDS
TGTTGAATGGAGCTGAAAAT+TGG 0.429790 7.3:+83272532 MS.gene44651:CDS
AGTGAGAAAGTGTAAGAGAA+AGG 0.431882 7.3:-83271630 None:intergenic
ATTGTTTGAGTTTGGGAAGA+AGG 0.432191 7.3:-83271606 None:intergenic
AAAACCAAAGAAAGTTGAAA+TGG 0.434697 7.3:+83272656 MS.gene44651:CDS
ATTGCTGATGTTAAAACAAT+TGG 0.438756 7.3:+83272582 MS.gene44651:CDS
AATGGTGATGGTGTTGAGAT+AGG 0.443549 7.3:+83272723 MS.gene44651:CDS
AGTATGTCAAAGAAAGTAAG+AGG 0.444791 7.3:-83271508 None:intergenic
TTAAAAGATGGTGTGTTGAA+TGG 0.447020 7.3:+83272519 MS.gene44651:CDS
ATTACATTTCTATCATAGAA+AGG 0.455442 7.3:-83272039 None:intergenic
GTGAGAAAGTGTAAGAGAAA+GGG 0.464182 7.3:-83271629 None:intergenic
TGGTATCTATTGCTTATGCA+TGG 0.464673 7.3:+83272286 MS.gene44651:CDS
AAGAAAATTCTTTGAACAGG+TGG 0.476348 7.3:-83271544 None:intergenic
GCTTTGGAAACTTTAAAAGA+TGG 0.477917 7.3:+83272507 MS.gene44651:CDS
CAAGGATCCAAATGAATTTG+AGG 0.481282 7.3:+83272062 MS.gene44651:CDS
ATGGTTTCTATAGATAGAAC+TGG 0.490163 7.3:+83272675 MS.gene44651:CDS
TTGTTTGAGTTTGGGAAGAA+GGG 0.491749 7.3:-83271605 None:intergenic
GTTAAAACAATTGGTACTGC+TGG 0.495742 7.3:+83272591 MS.gene44651:CDS
TGTCAAAACAAAAGGGTACT+AGG 0.501108 7.3:+83272229 MS.gene44651:CDS
TTTGCTTCGCTCTTTGTCAA+AGG 0.503257 7.3:+83272777 MS.gene44651:CDS
GGTATTTCTACTTGTGAAGA+TGG 0.504447 7.3:-83271469 None:intergenic
AAAGAAAGTAAGAGGAAGTG+AGG 0.516885 7.3:-83271500 None:intergenic
TTGAGTGATTGGTTAAAGCA+AGG 0.525666 7.3:+83272093 MS.gene44651:CDS
CTATGATAGAAATGTAATCA+AGG 0.525898 7.3:+83272044 MS.gene44651:CDS
TCTACAATCAGAAAGAGAAA+AGG 0.535706 7.3:-83272700 None:intergenic
AGAGGAAGTGAGGTTTCTGA+AGG 0.537876 7.3:-83271490 None:intergenic
AGAAAATTCTTTGAACAGGT+GGG 0.549747 7.3:-83271543 None:intergenic
GAGCTGAAAATTGGTCATCA+TGG 0.557553 7.3:+83272541 MS.gene44651:CDS
TTTGTAGTGTCAAAACAAAA+GGG 0.558518 7.3:+83272222 MS.gene44651:CDS
CCAATCATCAAATTCATCAA+AGG 0.560308 7.3:+83271700 MS.gene44651:CDS
AAGAAAAGTGAGGTTTCGTG+TGG 0.572135 7.3:-83271577 None:intergenic
GGTATCTATTGCTTATGCAT+GGG 0.580397 7.3:+83272287 MS.gene44651:CDS
CAAATGAGATGACCCAAAAG+AGG 0.588902 7.3:-83271658 None:intergenic
AAGGGTATTGAAGAAAAGTG+AGG 0.604994 7.3:-83271587 None:intergenic
AACTCATGTGGCAAACAAAG+TGG 0.610535 7.3:-83272012 None:intergenic
TCTGATTGTAGAAATGGTGA+TGG 0.615354 7.3:+83272711 MS.gene44651:CDS
AGTGATTGGTTAAAGCAAGG+TGG 0.623091 7.3:+83272096 MS.gene44651:CDS
ATCAGCATGAGATTCAGCTA+TGG 0.626225 7.3:-83271740 None:intergenic
TAGAAAGGACAAAACTCATG+TGG 0.652604 7.3:-83272024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTTCTATCATAGAA+AGG - chr7.3:83272042-83272061 None:intergenic 20.0%
!! ATTATTTCAATTATCTCGTT+TGG + chr7.3:83272179-83272198 MS.gene44651:CDS 20.0%
!! GTTAAAACAAGTGATTTATT+TGG + chr7.3:83272444-83272463 MS.gene44651:CDS 20.0%
!!! AACTTCTTTTATCAAATCTT+GGG + chr7.3:83271942-83271961 MS.gene44651:CDS 20.0%
! AAAACCAAAGAAAGTTGAAA+TGG + chr7.3:83272656-83272675 MS.gene44651:CDS 25.0%
! AGTGATTTATTTGGAGAAAA+TGG + chr7.3:83272453-83272472 MS.gene44651:CDS 25.0%
! ATTGCTGATGTTAAAACAAT+TGG + chr7.3:83272582-83272601 MS.gene44651:CDS 25.0%
! ATTTGTAGTGTCAAAACAAA+AGG + chr7.3:83272221-83272240 MS.gene44651:CDS 25.0%
! CTATGATAGAAATGTAATCA+AGG + chr7.3:83272044-83272063 MS.gene44651:CDS 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG - chr7.3:83271550-83271569 None:intergenic 25.0%
! TTACTTTCTTTGACATACTA+TGG + chr7.3:83271512-83271531 MS.gene44651:CDS 25.0%
! TTTGGATATTGAAAAGCTTA+AGG + chr7.3:83272197-83272216 MS.gene44651:CDS 25.0%
! TTTGTAGTGTCAAAACAAAA+GGG + chr7.3:83272222-83272241 MS.gene44651:CDS 25.0%
!! ACATACTTTGGAAATTGTAT+TGG + chr7.3:83272405-83272424 MS.gene44651:CDS 25.0%
!! CAACTTCTTTTATCAAATCT+TGG + chr7.3:83271941-83271960 MS.gene44651:CDS 25.0%
!! TATTTTGCCTCAAATTCATT+TGG - chr7.3:83272072-83272091 None:intergenic 25.0%
!! TCATGTGAAATATTCAAGTT+AGG - chr7.3:83271823-83271842 None:intergenic 25.0%
!!! AATTGTTTTAACATCAGCAA+TGG - chr7.3:83272583-83272602 None:intergenic 25.0%
!!! CATTTTTAAGCTTTCTACAT+AGG - chr7.3:83271972-83271991 None:intergenic 25.0%
AAATCCGTAGTTTGGAAAAA+TGG - chr7.3:83271875-83271894 None:intergenic 30.0%
AACAACCAATAGAAGCTTAA+TGG + chr7.3:83272119-83272138 MS.gene44651:CDS 30.0%
AAGAAAATTCTTTGAACAGG+TGG - chr7.3:83271547-83271566 None:intergenic 30.0%
AATCCTCTAAATGAATCTTC+TGG - chr7.3:83272162-83272181 None:intergenic 30.0%
AATTCACTTGTCAACATTTG+TGG + chr7.3:83272266-83272285 MS.gene44651:CDS 30.0%
AGAAAATTCTTTGAACAGGT+GGG - chr7.3:83271546-83271565 None:intergenic 30.0%
AGGCAAAATATTTGAGTGAT+TGG + chr7.3:83272082-83272101 MS.gene44651:CDS 30.0%
AGTATGTCAAAGAAAGTAAG+AGG - chr7.3:83271511-83271530 None:intergenic 30.0%
ATGGTTTCTATAGATAGAAC+TGG + chr7.3:83272675-83272694 MS.gene44651:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG + chr7.3:83272125-83272144 MS.gene44651:CDS 30.0%
CCAATCATCAAATTCATCAA+AGG + chr7.3:83271700-83271719 MS.gene44651:CDS 30.0%
GAAACCATTTCAACTTTCTT+TGG - chr7.3:83272663-83272682 None:intergenic 30.0%
GAGAACAAAAATGCTTTGAT+AGG + chr7.3:83272336-83272355 MS.gene44651:CDS 30.0%
GTGCTATAAACCTCAAATTT+AGG - chr7.3:83272621-83272640 None:intergenic 30.0%
TCTACAATCAGAAAGAGAAA+AGG - chr7.3:83272703-83272722 None:intergenic 30.0%
TCTCTTTCTGATTGTAGAAA+TGG + chr7.3:83272705-83272724 MS.gene44651:CDS 30.0%
TGTGTCTAACAAAAAAGCAA+TGG + chr7.3:83272749-83272768 MS.gene44651:CDS 30.0%
TTAAAAGATGGTGTGTTGAA+TGG + chr7.3:83272519-83272538 MS.gene44651:CDS 30.0%
! CCTTTGATGAATTTGATGAT+TGG - chr7.3:83271703-83271722 None:intergenic 30.0%
! GCTGATTTCAATCATTTATC+TGG + chr7.3:83271757-83271776 MS.gene44651:CDS 30.0%
!! ATTGGTTTGTGAGAATCATT+AGG - chr7.3:83271685-83271704 None:intergenic 30.0%
!! GCTTTGGAAACTTTAAAAGA+TGG + chr7.3:83272507-83272526 MS.gene44651:CDS 30.0%
!! GTTACCATTTTTCCAAACTA+CGG + chr7.3:83271868-83271887 MS.gene44651:CDS 30.0%
!! TCTCACTTTTATCCTCTTTT+GGG + chr7.3:83271646-83271665 MS.gene44651:CDS 30.0%
!! TTCTCACTTTTATCCTCTTT+TGG + chr7.3:83271645-83271664 MS.gene44651:CDS 30.0%
AAAGAAAGTAAGAGGAAGTG+AGG - chr7.3:83271503-83271522 None:intergenic 35.0%
CAAGGATCCAAATGAATTTG+AGG + chr7.3:83272062-83272081 MS.gene44651:CDS 35.0%
CAATTTCCAAAGTATGTTGC+AGG - chr7.3:83272402-83272421 None:intergenic 35.0%
CCAAACCATTAAGCTTCTAT+TGG - chr7.3:83272127-83272146 None:intergenic 35.0%
CCAATAGAAGCTTAATGGTT+TGG + chr7.3:83272124-83272143 MS.gene44651:CDS 35.0%
CCAATTGAAAATCCGTAGTT+TGG - chr7.3:83271883-83271902 None:intergenic 35.0%
GGTATCTATTGCTTATGCAT+GGG + chr7.3:83272287-83272306 MS.gene44651:CDS 35.0%
GTTAAAACAATTGGTACTGC+TGG + chr7.3:83272591-83272610 MS.gene44651:CDS 35.0%
GTTCCAGAAGATTCATTTAG+AGG + chr7.3:83272156-83272175 MS.gene44651:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG - chr7.3:83272027-83272046 None:intergenic 35.0%
TCTGATTGTAGAAATGGTGA+TGG + chr7.3:83272711-83272730 MS.gene44651:CDS 35.0%
TGGTATCTATTGCTTATGCA+TGG + chr7.3:83272286-83272305 MS.gene44651:CDS 35.0%
TGGTCATCATGGTTACTTAA+AGG + chr7.3:83272552-83272571 MS.gene44651:CDS 35.0%
TGTTGAATGGAGCTGAAAAT+TGG + chr7.3:83272532-83272551 MS.gene44651:CDS 35.0%
! ACATGAACAAGCTTCTGTTT+TGG + chr7.3:83271837-83271856 MS.gene44651:CDS 35.0%
! AGAAAGGGATTGTTTGAGTT+TGG - chr7.3:83271617-83271636 None:intergenic 35.0%
! AGTGAGAAAGTGTAAGAGAA+AGG - chr7.3:83271633-83271652 None:intergenic 35.0%
! ATTGTTTGAGTTTGGGAAGA+AGG - chr7.3:83271609-83271628 None:intergenic 35.0%
! CCAAACTACGGATTTTCAAT+TGG + chr7.3:83271880-83271899 MS.gene44651:CDS 35.0%
! GAAAGGGATTGTTTGAGTTT+GGG - chr7.3:83271616-83271635 None:intergenic 35.0%
! GGTATTTCTACTTGTGAAGA+TGG - chr7.3:83271472-83271491 None:intergenic 35.0%
! GTGAGAAAGTGTAAGAGAAA+GGG - chr7.3:83271632-83271651 None:intergenic 35.0%
! TAGGTTTGAATATCGATTGC+AGG + chr7.3:83272355-83272374 MS.gene44651:CDS 35.0%
! TTGAGTGATTGGTTAAAGCA+AGG + chr7.3:83272093-83272112 MS.gene44651:CDS 35.0%
! TTGTTTGAGTTTGGGAAGAA+GGG - chr7.3:83271608-83271627 None:intergenic 35.0%
!! AAGGGTATTGAAGAAAAGTG+AGG - chr7.3:83271590-83271609 None:intergenic 35.0%
!! TGTCAAAACAAAAGGGTACT+AGG + chr7.3:83272229-83272248 MS.gene44651:CDS 35.0%
!!! GAGGTTTATAGCACTGATTT+TGG + chr7.3:83272627-83272646 MS.gene44651:CDS 35.0%
!!! TATAGCACTGATTTTGGTTG+TGG + chr7.3:83272633-83272652 MS.gene44651:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG + chr7.3:83271910-83271929 MS.gene44651:CDS 35.0%
AACTCATGTGGCAAACAAAG+TGG - chr7.3:83272015-83272034 None:intergenic 40.0%
AAGAAAAGTGAGGTTTCGTG+TGG - chr7.3:83271580-83271599 None:intergenic 40.0%
ATCAGCATGAGATTCAGCTA+TGG - chr7.3:83271743-83271762 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG - chr7.3:83271661-83271680 None:intergenic 40.0%
CCAAAGTATGTTGCAGGAAT+CGG - chr7.3:83272396-83272415 None:intergenic 40.0%
GAGCTGAAAATTGGTCATCA+TGG + chr7.3:83272541-83272560 MS.gene44651:CDS 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG + chr7.3:83272777-83272796 MS.gene44651:CDS 40.0%
! AGTGATTGGTTAAAGCAAGG+TGG + chr7.3:83272096-83272115 MS.gene44651:CDS 40.0%
!! AATGGTGATGGTGTTGAGAT+AGG + chr7.3:83272723-83272742 MS.gene44651:CDS 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG + chr7.3:83271659-83271678 MS.gene44651:CDS 40.0%
!! TGAAGTGTTGAGTGAAGCTT+TGG + chr7.3:83272491-83272510 MS.gene44651:CDS 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG + chr7.3:83272608-83272627 MS.gene44651:CDS 40.0%
AGAGGAAGTGAGGTTTCTGA+AGG - chr7.3:83271493-83271512 None:intergenic 45.0%
CCGATTCCTGCAACATACTT+TGG + chr7.3:83272393-83272412 MS.gene44651:CDS 45.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 83271436 83272812 83271436 ID=MS.gene44651
chr7.3 mRNA 83271436 83272812 83271436 ID=MS.gene44651.t1;Parent=MS.gene44651
chr7.3 exon 83271436 83272812 83271436 ID=MS.gene44651.t1.exon1;Parent=MS.gene44651.t1
chr7.3 CDS 83271436 83272812 83271436 ID=cds.MS.gene44651.t1;Parent=MS.gene44651.t1
Gene Sequence

>MS.gene44651

ATGACGAAAATCATAGAAATTTTCAATGTAGCACCATCTTCACAAGTAGAAATACCTTCAGAAACCTCACTTCCTCTTACTTTCTTTGACATACTATGGTTAAGATTCCCACCTGTTCAAAGAATTTTCTTCTATGAGTTTCCACACGAAACCTCACTTTTCTTCAATACCCTTCTTCCCAAACTCAAACAATCCCTTTCTCTTACACTTTCTCACTTTTATCCTCTTTTGGGTCATCTCATTTGGCCTAATGATTCTCACAAACCAATCATCAAATTCATCAAAGGAAACACTCTTTCACTTACCATAGCTGAATCTCATGCTGATTTCAATCATTTATCTGGTAAGAATCTTTCTGAAGCTACTCAAATTCATGATCTTTTACCTAACTTGAATATTTCACATGAACAAGCTTCTGTTTTGGCTCTTCAAGTTACCATTTTTCCAAACTACGGATTTTCAATTGGTATTACTTCACATCATGCTGTTTTAGATGGTAAAACTTCAACTTCTTTTATCAAATCTTGGGCTTACCTATGTAGAAAGCTTAAAAATGAAGTATCTGAATTAGAAACACCACTTTGTTTGCCACATGAGTTTTGTCCTTTCTATGATAGAAATGTAATCAAGGATCCAAATGAATTTGAGGCAAAATATTTGAGTGATTGGTTAAAGCAAGGTGGAACAACCAATAGAAGCTTAATGGTTTGGGATTTTCAAGTTCCAGAAGATTCATTTAGAGGATTATTTCAATTATCTCGTTTGGATATTGAAAAGCTTAAGGAATTTGTAGTGTCAAAACAAAAGGGTACTAGGAATGAGAATAAAAAAATTCACTTGTCAACATTTGTGGTATCTATTGCTTATGCATGGGTATGTAGAATAAAAGCAGAGAAAATTGAGAACAAAAATGCTTTGATAGGTTTGAATATCGATTGCAGGAATCGATTAGAAGCACCGATTCCTGCAACATACTTTGGAAATTGTATTGGATTAAGACTTGCATTTGTTAAAACAAGTGATTTATTTGGAGAAAATGGAATAATTGTTGCTGTTGAAGTGTTGAGTGAAGCTTTGGAAACTTTAAAAGATGGTGTGTTGAATGGAGCTGAAAATTGGTCATCATGGTTACTTAAAGGTCTTGCCATTGCTGATGTTAAAACAATTGGTACTGCTGGTTCACCTAAATTTGAGGTTTATAGCACTGATTTTGGTTGTGGAAAACCAAAGAAAGTTGAAATGGTTTCTATAGATAGAACTGGTGCCTTTTCTCTTTCTGATTGTAGAAATGGTGATGGTGTTGAGATAGGTTTTGTGTCTAACAAAAAAGCAATGGAAGCTTTTGCTTCGCTCTTTGTCAAAGGCATTGCATCTTGA
Protein sequence

>MS.gene44651.t1

MTKIIEIFNVAPSSQVEIPSETSLPLTFFDILWLRFPPVQRIFFYEFPHETSLFFNTLLPKLKQSLSLTLSHFYPLLGHLIWPNDSHKPIIKFIKGNTLSLTIAESHADFNHLSGKNLSEATQIHDLLPNLNISHEQASVLALQVTIFPNYGFSIGITSHHAVLDGKTSTSFIKSWAYLCRKLKNEVSELETPLCLPHEFCPFYDRNVIKDPNEFEAKYLSDWLKQGGTTNRSLMVWDFQVPEDSFRGLFQLSRLDIEKLKEFVVSKQKGTRNENKKIHLSTFVVSIAYAWVCRIKAEKIENKNALIGLNIDCRNRLEAPIPATYFGNCIGLRLAFVKTSDLFGENGIIVAVEVLSEALETLKDGVLNGAENWSSWLLKGLAIADVKTIGTAGSPKFEVYSTDFGCGKPKKVEMVSIDRTGAFSLSDCRNGDGVEIGFVSNKKAMEAFASLFVKGIAS