AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056902


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056902.t1 MTR_4g065040 95.420 393 12 1 1 393 83 469 0.0 766
MS.gene056902.t1 MTR_2g097950 75.263 380 94 0 1 380 98 477 0.0 610
MS.gene056902.t1 MTR_2g097950 68.158 380 86 1 1 380 98 442 0.0 536
MS.gene056902.t1 MTR_8g076480 59.580 381 151 1 1 381 87 464 7.88e-169 481
MS.gene056902.t1 MTR_1g029840 53.608 388 177 1 1 388 94 478 9.06e-149 430
MS.gene056902.t1 MTR_1g029840 53.608 388 177 1 1 388 94 478 1.88e-148 429
MS.gene056902.t1 MTR_3g088150 53.421 380 174 1 1 380 96 472 1.95e-143 417
MS.gene056902.t1 MTR_8g094600 52.806 392 178 2 1 388 147 535 7.56e-142 414
MS.gene056902.t1 MTR_1314s0010 36.047 344 201 5 23 355 1 336 6.64e-66 213
MS.gene056902.t1 MTR_1222s0010 39.867 301 171 4 1 299 82 374 1.41e-63 216
MS.gene056902.t1 MTR_2g067660 29.586 338 224 10 19 349 178 508 1.18e-35 137
MS.gene056902.t1 MTR_4g106510 30.079 379 246 10 2 369 130 500 1.18e-34 134
MS.gene056902.t1 MTR_3g078490 30.079 379 246 9 2 369 160 530 6.63e-34 132
MS.gene056902.t1 MTR_2g034160 30.836 347 213 10 13 342 178 514 5.55e-33 130
MS.gene056902.t1 MTR_3g078550 29.708 377 250 8 2 369 100 470 5.61e-32 126
MS.gene056902.t1 MTR_3g078550 29.708 377 250 8 2 369 130 500 6.47e-32 126
MS.gene056902.t1 MTR_8g083530 30.114 352 223 12 17 356 154 494 2.73e-30 122
MS.gene056902.t1 MTR_3g078170 29.971 347 228 10 18 356 194 533 1.45e-29 120
MS.gene056902.t1 MTR_6g086300 30.682 352 221 12 17 356 153 493 5.37e-29 118
MS.gene056902.t1 MTR_6g086300 30.682 352 221 12 17 356 153 493 5.37e-29 118
MS.gene056902.t1 MTR_4g107040 29.799 349 226 11 18 356 196 535 7.51e-28 115
MS.gene056902.t1 MTR_8g064170 30.747 348 224 12 18 356 193 532 2.09e-27 114
MS.gene056902.t1 MTR_4g020720 62.353 85 30 1 93 177 119 201 2.13e-27 110
MS.gene056902.t1 MTR_6g086340 29.107 347 221 12 22 355 156 490 1.78e-24 105
MS.gene056902.t1 MTR_4g131180 29.193 322 210 11 23 338 158 467 1.89e-22 99.4
MS.gene056902.t1 MTR_8g064170 29.191 346 200 13 18 356 193 500 1.82e-21 96.3
MS.gene056902.t1 MTR_8g083520 26.211 351 205 10 17 356 65 372 3.25e-21 94.7
MS.gene056902.t1 MTR_8g083520 26.211 351 205 10 17 356 145 452 7.05e-21 94.4
MS.gene056902.t1 MTR_3g078170 29.588 267 175 9 18 276 194 455 1.51e-20 93.6
MS.gene056902.t1 MTR_4g131180 28.296 311 209 9 23 329 158 458 4.85e-20 92.0
MS.gene056902.t1 MTR_4g020710 58.571 70 29 0 211 280 16 85 6.05e-20 85.9
MS.gene056902.t1 MTR_1g014320 27.103 321 218 8 23 338 158 467 1.72e-19 90.5
MS.gene056902.t1 MTR_4g093170 26.837 313 201 10 20 316 174 474 4.80e-18 86.3
MS.gene056902.t1 MTR_2g009750 27.010 311 203 8 20 316 147 447 2.40e-17 84.0
MS.gene056902.t1 MTR_2g009750 27.010 311 202 8 20 316 147 446 3.11e-17 83.6
MS.gene056902.t1 MTR_2g009750 27.010 311 202 8 20 316 146 445 3.83e-17 83.6
MS.gene056902.t1 MTR_2g042330 25.779 353 241 11 20 362 152 493 1.84e-16 81.3
MS.gene056902.t1 MTR_3g078490 33.831 201 126 4 2 199 130 326 5.87e-16 79.0
MS.gene056902.t1 MTR_3g078170 29.707 239 155 9 18 248 194 427 9.08e-16 79.0
MS.gene056902.t1 MTR_3g078170 29.707 239 155 9 18 248 194 427 1.14e-15 78.6
MS.gene056902.t1 MTR_8g083530 36.111 180 99 8 22 191 159 332 2.33e-15 77.4
MS.gene056902.t1 MTR_1690s0010 30.476 210 126 9 23 222 146 345 5.34e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056902.t1 AT4G36250 58.133 375 155 1 4 378 89 461 7.43e-164 468
MS.gene056902.t1 AT1G44170 52.911 395 176 2 1 388 27 418 2.24e-151 434
MS.gene056902.t1 AT1G44170 52.911 395 176 2 1 388 90 481 1.61e-150 434
MS.gene056902.t1 AT1G44170 52.911 395 176 2 1 388 90 481 1.61e-150 434
MS.gene056902.t1 AT4G34240 53.786 383 170 2 15 393 25 404 5.10e-142 410
MS.gene056902.t1 AT4G34240 53.786 383 170 2 15 393 152 531 6.17e-140 409
MS.gene056902.t1 AT4G34240 53.786 383 170 2 15 393 167 546 7.05e-140 410
MS.gene056902.t1 AT4G34240 57.269 227 94 1 15 241 167 390 1.32e-79 250
MS.gene056902.t1 AT1G74920 30.688 378 245 10 2 369 125 495 1.66e-38 144
MS.gene056902.t1 AT1G74920 30.688 378 245 10 2 369 130 500 2.13e-38 144
MS.gene056902.t1 AT1G79440 30.267 337 223 9 19 349 184 514 1.63e-37 142
MS.gene056902.t1 AT3G48170 28.684 380 250 10 2 369 130 500 4.61e-35 135
MS.gene056902.t1 AT3G66658 29.060 351 232 8 22 360 187 532 8.72e-34 132
MS.gene056902.t1 AT3G66658 28.457 376 247 9 22 380 187 557 1.14e-33 132
MS.gene056902.t1 AT1G23800 28.736 348 231 10 18 356 186 525 1.44e-28 117
MS.gene056902.t1 AT3G48000 29.310 348 225 9 20 356 192 529 9.21e-28 115
MS.gene056902.t1 AT3G24503 27.299 348 232 12 20 356 155 492 4.16e-25 107
MS.gene056902.t1 AT2G24270 27.586 319 219 7 23 338 198 507 8.86e-23 100
MS.gene056902.t1 AT2G24270 27.003 337 234 7 23 356 158 485 1.27e-22 99.8
MS.gene056902.t1 AT2G24270 27.003 337 234 7 23 356 158 485 1.55e-22 99.8
MS.gene056902.t1 AT2G24270 27.003 337 234 7 23 356 158 485 1.55e-22 99.8
MS.gene056902.t1 AT1G54100 24.716 352 240 10 23 362 154 492 8.69e-19 88.6
MS.gene056902.t1 AT1G54100 24.716 352 240 10 23 362 154 492 8.69e-19 88.6
MS.gene056902.t1 AT1G23800 32.258 186 115 7 18 197 186 366 8.19e-13 69.7
MS.gene056902.t1 AT2G14170 25.067 371 243 11 8 358 125 480 1.70e-11 66.2
MS.gene056902.t1 AT2G14170 25.000 372 242 11 8 358 234 589 2.19e-11 65.9

Find 84 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGACTCACTTTCATCTTCT+TGG 0.177885 4.2:-40126095 MS.gene056902:CDS
CGAATTCTTGTGGGAAAATA+TGG 0.202081 4.2:-40125620 MS.gene056902:CDS
TGGGACAAAATCTTCTTTAC+AGG 0.243473 4.2:-40126460 MS.gene056902:intron
GTTCAAGAATCTGTTGTTTA+TGG 0.261717 4.2:-40125311 MS.gene056902:CDS
ATGAAACTTACAGTAATAAT+TGG 0.278416 4.2:+40125103 None:intergenic
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4.2:-40126085 MS.gene056902:intron
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4.2:+40126135 None:intergenic
GGAGTAGGTGGAAGTGGATT+TGG 0.322807 4.2:-40124655 MS.gene056902:CDS
TCATTCTGTTCTGCAATGTT+TGG 0.329437 4.2:+40124844 None:intergenic
GGACTCACTTTCATCTTCTT+GGG 0.339156 4.2:-40126094 MS.gene056902:CDS
ACATAAAGAGCAAGAGGTTT+AGG 0.345121 4.2:+40124879 None:intergenic
TGCTGGCATTGCCACTTACT+TGG 0.355077 4.2:-40126548 MS.gene056902:CDS
TCATCTTGGAATTTGCCCTT+TGG 0.381304 4.2:-40126884 MS.gene056902:intron
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4.2:+40126950 None:intergenic
AAAGAGTTGCTGTTCAAAAC+TGG 0.409001 4.2:-40125549 MS.gene056902:intron
ATTTATTGAGCCAACAATCT+TGG 0.414711 4.2:-40125182 MS.gene056902:CDS
GCACCTGACCCCTGTAACAC+TGG 0.415048 4.2:-40126145 MS.gene056902:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4.2:+40125393 None:intergenic
TTGTCTTTGGAGCCACTGAT+AGG 0.437757 4.2:-40126643 MS.gene056902:CDS
GAAAGTGAGTCCACAACTGC+AGG 0.443232 4.2:+40126105 None:intergenic
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4.2:-40125422 MS.gene056902:CDS
AGAAATTGTTCATGAGCCTC+TGG 0.445976 4.2:-40126924 MS.gene056902:CDS
TGTTCCTCTCTACTTGCTGC+TGG 0.448123 4.2:-40126565 MS.gene056902:CDS
GGCTTTATTGTCCAAGTAAG+TGG 0.456241 4.2:+40126537 None:intergenic
TCGTTCTCATTATTTCATCT+TGG 0.461385 4.2:-40126898 MS.gene056902:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4.2:-40126138 MS.gene056902:CDS
TTTGGTGGAGTAGGTGGAAG+TGG 0.473180 4.2:-40124661 MS.gene056902:CDS
TGGAAAATGCCCTGCAGTTG+TGG 0.478847 4.2:-40126115 MS.gene056902:CDS
TTATAAGGTGGAATTGATGA+AGG 0.484071 4.2:-40125444 MS.gene056902:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4.2:+40126136 None:intergenic
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4.2:+40125392 None:intergenic
AACTATCCTTGCTATAGTGT+TGG 0.490148 4.2:+40125382 None:intergenic
CAAGAATCTGTTGTTTATGG+TGG 0.492315 4.2:-40125308 MS.gene056902:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4.2:-40124825 MS.gene056902:CDS
ACAGTAATAATTGGAAGTAG+TGG 0.495808 4.2:+40125112 None:intergenic
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4.2:+40126142 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4.2:+40126956 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4.2:+40124538 None:intergenic
TATTGAGCCAACAATCTTGG+TGG 0.503945 4.2:-40125179 MS.gene056902:CDS
AGTCTACCATTTGGTGGAGT+AGG 0.504143 4.2:-40124670 MS.gene056902:CDS
GCAGCAGATAGTCTACCATT+TGG 0.506468 4.2:-40124679 MS.gene056902:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4.2:+40125152 None:intergenic
AACATTATTGCTGCATCAAG+TGG 0.523734 4.2:+40125151 None:intergenic
CTGATAGGAGCTATAGCTGC+TGG 0.523994 4.2:-40126628 MS.gene056902:CDS
GGAAAATATGGAACTTGTGC+TGG 0.526806 4.2:-40125608 MS.gene056902:CDS
GTGAAAACATAAAGAGCAAG+AGG 0.546456 4.2:+40124873 None:intergenic
TTTGCAGGTGGAGAAGATTG+AGG 0.547084 4.2:-40124928 MS.gene056902:intron
AAAGCCATTAAAGTTATCCA+AGG 0.553386 4.2:-40126520 MS.gene056902:CDS
CTACCATTTGGTGGAGTAGG+TGG 0.556973 4.2:-40124667 MS.gene056902:CDS
GGCTGTGAAGCGAATTCTTG+TGG 0.558485 4.2:-40125630 MS.gene056902:CDS
GTGGATTTGGCATGTACCAT+GGG 0.562857 4.2:-40124642 MS.gene056902:CDS
GCAGATAGTCTACCATTTGG+TGG 0.563379 4.2:-40124676 MS.gene056902:CDS
CTTCCACCTACTCCACCAAA+TGG 0.564341 4.2:+40124664 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4.2:-40126139 MS.gene056902:CDS
AAATAAGTTTCAACTACTTG+AGG 0.566706 4.2:-40124527 MS.gene056902:intron
GTATTGAATTCATAAGCTCT+AGG 0.568775 4.2:-40124902 MS.gene056902:CDS
CAGTAATAATTGGAAGTAGT+GGG 0.569529 4.2:+40125113 None:intergenic
GCAAGTAGAGAGGAACATGC+AGG 0.584046 4.2:+40126571 None:intergenic
AAGCCATTAAAGTTATCCAA+GGG 0.587506 4.2:-40126519 MS.gene056902:CDS
TTGGTGACTGAATGTGTCAA+AGG 0.587692 4.2:+40124612 None:intergenic
GCTGTGAAGCGAATTCTTGT+GGG 0.591682 4.2:-40125629 MS.gene056902:CDS
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4.2:-40127061 None:intergenic
AATATCAGGTAGTGCACGAG+TGG 0.599899 4.2:-40126196 MS.gene056902:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4.2:+40125153 None:intergenic
GAAATTGTTCATGAGCCTCT+GGG 0.609785 4.2:-40126923 MS.gene056902:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4.2:-40125439 MS.gene056902:CDS
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4.2:-40126135 MS.gene056902:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4.2:-40126195 MS.gene056902:intron
AACATTCCAACACTATAGCA+AGG 0.624404 4.2:-40125388 MS.gene056902:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4.2:+40124541 None:intergenic
AATAATTGGTCGGATTCCTG+TGG 0.634417 4.2:+40126493 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.636960 4.2:+40126631 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4.2:-40124643 MS.gene056902:CDS
AATGCCAGCAGCAAGTAGAG+AGG 0.641755 4.2:+40126561 None:intergenic
AAAGTGAGTCCACAACTGCA+GGG 0.644119 4.2:+40126106 None:intergenic
CATGCAGGAGACAACTCTGA+AGG 0.651380 4.2:+40126586 None:intergenic
GCCATTAAAGTTATCCAAGG+GGG 0.659849 4.2:-40126517 MS.gene056902:CDS
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4.2:+40125154 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4.2:-40124555 MS.gene056902:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4.2:-40126194 MS.gene056902:intron
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4.2:+40126137 None:intergenic
AGCCATTAAAGTTATCCAAG+GGG 0.687482 4.2:-40126518 MS.gene056902:CDS
TGTCAAAGGAGAATTTCCCA+TGG 0.698053 4.2:+40124626 None:intergenic
ATAATGAGAACGACACCCAG+AGG 0.731880 4.2:+40126908 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTATAATTATGATTATTT+GGG - chr4.2:40126872-40126891 MS.gene056902:intron 10.0%
!!! TTTTATTTTATTTTATAAGG+TGG - chr4.2:40125918-40125937 MS.gene056902:intron 10.0%
!! ATTTGAACATTAATATAAAG+TGG + chr4.2:40126638-40126657 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG - chr4.2:40126871-40126890 MS.gene056902:intron 15.0%
!! GAAATAATTTACTTTGATAT+AGG - chr4.2:40124393-40124412 MS.gene056902:intron 15.0%
!! TATGCAAAAGATAAAATAAA+TGG + chr4.2:40126422-40126441 None:intergenic 15.0%
!! TTATTGTAAAAACTAATATC+AGG - chr4.2:40125164-40125183 MS.gene056902:CDS 15.0%
!! AGAATAACGAAAAAAATTAG+AGG + chr4.2:40124647-40124666 None:intergenic 20.0%
!! ATGAAACTTACAGTAATAAT+TGG + chr4.2:40126274-40126293 None:intergenic 20.0%
!! ATTATCAATGTAACAATTTC+TGG - chr4.2:40125709-40125728 MS.gene056902:intron 20.0%
!! ATTCAATTACTAGAAAAAGT+TGG - chr4.2:40124566-40124585 MS.gene056902:CDS 20.0%
!! CATCTATTACCTTAATTTAT+CGG - chr4.2:40125600-40125619 MS.gene056902:CDS 20.0%
!! GTAAATTATTTCGTTATTAG+TGG + chr4.2:40124385-40124404 None:intergenic 20.0%
!! TATATAATTAACTCACCAAA+GGG + chr4.2:40124508-40124527 None:intergenic 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG - chr4.2:40126238-40126257 MS.gene056902:intron 20.0%
!!! TAATTATGATTATTTGGGAT+TGG - chr4.2:40126877-40126896 MS.gene056902:intron 20.0%
!!! TTCTTTTATCCGATAAATTA+AGG + chr4.2:40125612-40125631 None:intergenic 20.0%
! AAAAGATAGATATAAGCATG+TGG + chr4.2:40126385-40126404 None:intergenic 25.0%
! AAATAAGTTTCAACTACTTG+AGG - chr4.2:40126847-40126866 MS.gene056902:intron 25.0%
! AAATATATAGTAAAACCCGA+TGG + chr4.2:40125478-40125497 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG - chr4.2:40124894-40124913 MS.gene056902:CDS 25.0%
! ACTTAATCAAATGTAACTTG+TGG + chr4.2:40125677-40125696 None:intergenic 25.0%
! AGAGGTGGAAAAAATAAATT+TGG + chr4.2:40124629-40124648 None:intergenic 25.0%
! ATAACGAAAAAAATTAGAGG+TGG + chr4.2:40124644-40124663 None:intergenic 25.0%
! ATAGAGAATCAAATAGAAGA+AGG + chr4.2:40125572-40125591 None:intergenic 25.0%
! CAAGTTACATTTGATTAAGT+TGG - chr4.2:40125677-40125696 MS.gene056902:intron 25.0%
! CCAATTATTACAGCAAAAAT+GGG - chr4.2:40124895-40124914 MS.gene056902:CDS 25.0%
! GTATATAATTAACTCACCAA+AGG + chr4.2:40124509-40124528 None:intergenic 25.0%
! TAGGAATATTAGTATGTGAA+AGG + chr4.2:40126128-40126147 None:intergenic 25.0%
! TATCGGATAAAAGAAAACAA+CGG - chr4.2:40125617-40125636 MS.gene056902:CDS 25.0%
! TCTTTAATCCAAGAATAACA+AGG + chr4.2:40126904-40126923 None:intergenic 25.0%
! TGTAACCAATAAAAAAACAC+AGG - chr4.2:40124707-40124726 MS.gene056902:intron 25.0%
!! ATGACTATTTTACAAATGTC+TGG - chr4.2:40126313-40126332 MS.gene056902:intron 25.0%
!! CTTAATCAAATGTAACTTGT+GGG + chr4.2:40125676-40125695 None:intergenic 25.0%
!! GTTAGAGTCTTCATAAATTT+TGG - chr4.2:40124667-40124686 MS.gene056902:CDS 25.0%
!! TATTTTACAAATGTCTGGTA+TGG - chr4.2:40126318-40126337 MS.gene056902:intron 25.0%
!!! AACAATTTCTGGTGATTATA+AGG - chr4.2:40125720-40125739 MS.gene056902:intron 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG + chr4.2:40124715-40124734 None:intergenic 25.0%
!!! CATAACCAGGTTTTAAATAA+AGG + chr4.2:40125110-40125129 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG - chr4.2:40126801-40126820 MS.gene056902:intron 25.0%
!!! TATGTAGGTTGATATGTTTT+CGG - chr4.2:40127028-40127047 MS.gene056902:intron 25.0%
!!! TCTTTTGCATAATAATTTGC+AGG - chr4.2:40126431-40126450 MS.gene056902:intron 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG + chr4.2:40126784-40126803 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG + chr4.2:40124894-40124913 None:intergenic 25.0%
!!! TTTTTTGGTGATAGGAATTT+AGG + chr4.2:40126147-40126166 None:intergenic 25.0%
AAAAAACACAGGATTGTCTT+TGG - chr4.2:40124718-40124737 MS.gene056902:intron 30.0%
AAAGCCATTAAAGTTATCCA+AGG - chr4.2:40124854-40124873 MS.gene056902:CDS 30.0%
AAGCCATTAAAGTTATCCAA+GGG - chr4.2:40124855-40124874 MS.gene056902:CDS 30.0%
AAGTGGCGATGAAAAATATT+TGG + chr4.2:40124950-40124969 None:intergenic 30.0%
AATATTAGTATGTGAAAGGC+AGG + chr4.2:40126124-40126143 None:intergenic 30.0%
ACAGTAATAATTGGAAGTAG+TGG + chr4.2:40126265-40126284 None:intergenic 30.0%
ACTAGAAAAAGTTGGAACAA+CGG - chr4.2:40124574-40124593 MS.gene056902:CDS 30.0%
AGTGGCGATGAAAAATATTT+GGG + chr4.2:40124949-40124968 None:intergenic 30.0%
ATATTAGTATGTGAAAGGCA+GGG + chr4.2:40126123-40126142 None:intergenic 30.0%
ATCTGCTCAAAATCTAAAAG+TGG + chr4.2:40124967-40124986 None:intergenic 30.0%
ATTTATTGAGCCAACAATCT+TGG - chr4.2:40126192-40126211 MS.gene056902:intron 30.0%
CAGTAATAATTGGAAGTAGT+GGG + chr4.2:40126264-40126283 None:intergenic 30.0%
GAATAACACAACAACAGTAA+CGG + chr4.2:40125550-40125569 None:intergenic 30.0%
GTATTGAATTCATAAGCTCT+AGG - chr4.2:40126472-40126491 MS.gene056902:CDS 30.0%
TCGTTCTCATTATTTCATCT+TGG - chr4.2:40124476-40124495 MS.gene056902:intron 30.0%
TTATAAGGTGGAATTGATGA+AGG - chr4.2:40125930-40125949 MS.gene056902:intron 30.0%
TTATGAAGCAGTGCAAATTA+TGG - chr4.2:40125077-40125096 MS.gene056902:intron 30.0%
! ATGATATCTGAAACATCATC+TGG - chr4.2:40126549-40126568 MS.gene056902:CDS 30.0%
! CAGATTTTAAATTGCAGTCA+CGG - chr4.2:40124982-40125001 MS.gene056902:intron 30.0%
! GTTCAAGAATCTGTTGTTTA+TGG - chr4.2:40126063-40126082 MS.gene056902:intron 30.0%
! TTGCCTTGTTAGTTAATTAG+CGG - chr4.2:40126944-40126963 MS.gene056902:CDS 30.0%
! TTTGCATAATAATTTGCAGG+TGG - chr4.2:40126434-40126453 MS.gene056902:intron 30.0%
!! AATTTCTGGTGATTATAAGG+TGG - chr4.2:40125723-40125742 MS.gene056902:intron 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG + chr4.2:40124898-40124917 None:intergenic 30.0%
!!! CATGTTGTTTTTTTGGTGAT+AGG + chr4.2:40126155-40126174 None:intergenic 30.0%
!!! GTGACATTCATGTTTTAATG+TGG - chr4.2:40125010-40125029 MS.gene056902:intron 30.0%
!!! TTGAGCACATGTTGTTTTTT+TGG + chr4.2:40126162-40126181 None:intergenic 30.0%
!!! TTTTAGGTTTCTAAGTCCAT+CGG - chr4.2:40125459-40125478 MS.gene056902:intron 30.0%
AACAACGGTAACAAACTTGT+TGG - chr4.2:40125632-40125651 MS.gene056902:CDS 35.0%
AACATTATTGCTGCATCAAG+TGG + chr4.2:40126226-40126245 None:intergenic 35.0%
AACATTCCAACACTATAGCA+AGG - chr4.2:40125986-40126005 MS.gene056902:intron 35.0%
ACAACGGCATGACATAATAA+AGG + chr4.2:40125509-40125528 None:intergenic 35.0%
ACATAAAGAGCAAGAGGTTT+AGG + chr4.2:40126498-40126517 None:intergenic 35.0%
ACATTATTGCTGCATCAAGT+GGG + chr4.2:40126225-40126244 None:intergenic 35.0%
AGCCATTAAAGTTATCCAAG+GGG - chr4.2:40124856-40124875 MS.gene056902:CDS 35.0%
AGGGCTTCATAAGATTACAA+CGG + chr4.2:40125525-40125544 None:intergenic 35.0%
CAACGGCAAAAATTTAGAGA+CGG - chr4.2:40124591-40124610 MS.gene056902:CDS 35.0%
CGAATTCTTGTGGGAAAATA+TGG - chr4.2:40125754-40125773 MS.gene056902:intron 35.0%
GTGAAAACATAAAGAGCAAG+AGG + chr4.2:40126504-40126523 None:intergenic 35.0%
GTGTGGATCAAGAAAATGTT+TGG - chr4.2:40125952-40125971 MS.gene056902:intron 35.0%
TCATTCTGTTCTGCAATGTT+TGG + chr4.2:40126533-40126552 None:intergenic 35.0%
TGAAACTTATTTGCAGTCCA+TGG + chr4.2:40126839-40126858 None:intergenic 35.0%
TGAGTTTGCAACTCTTATGT+AGG - chr4.2:40127013-40127032 MS.gene056902:intron 35.0%
TGGGACAAAATCTTCTTTAC+AGG - chr4.2:40124914-40124933 MS.gene056902:CDS 35.0%
TTAACTAACAAGGCAAGATC+TGG + chr4.2:40126940-40126959 None:intergenic 35.0%
TTCATCTTCTTGGGATTTAG+AGG - chr4.2:40125289-40125308 MS.gene056902:CDS 35.0%
TTTGGTATAGATATCCACCA+TGG - chr4.2:40126819-40126838 MS.gene056902:intron 35.0%
! AAAGAGTTGCTGTTCAAAAC+TGG - chr4.2:40125825-40125844 MS.gene056902:intron 35.0%
! AACTATCCTTGCTATAGTGT+TGG + chr4.2:40125995-40126014 None:intergenic 35.0%
! CAAGAATCTGTTGTTTATGG+TGG - chr4.2:40126066-40126085 MS.gene056902:intron 35.0%
! CTATAGTGTTGGAATGTTGT+GGG + chr4.2:40125984-40126003 None:intergenic 35.0%
! GATGGACTTAGAAACCTAAA+AGG + chr4.2:40125460-40125479 None:intergenic 35.0%
! TGCCTTGTTAGTTAATTAGC+GGG - chr4.2:40126945-40126964 MS.gene056902:CDS 35.0%
! TTTAGGTTTCTAAGTCCATC+GGG - chr4.2:40125460-40125479 MS.gene056902:intron 35.0%
!!! GTTCTGCAATGTTTGGTTTT+TGG + chr4.2:40126526-40126545 None:intergenic 35.0%
AACTTATTTGCAGTCCATGG+TGG + chr4.2:40126836-40126855 None:intergenic 40.0%
AATAATTGGTCGGATTCCTG+TGG + chr4.2:40124884-40124903 None:intergenic 40.0%
AGAAATTGTTCATGAGCCTC+TGG - chr4.2:40124450-40124469 MS.gene056902:intron 40.0%
ATTATTGCTGCATCAAGTGG+GGG + chr4.2:40126223-40126242 None:intergenic 40.0%
CACCCGCTAATTAACTAACA+AGG + chr4.2:40126950-40126969 None:intergenic 40.0%
CATTATTGCTGCATCAAGTG+GGG + chr4.2:40126224-40126243 None:intergenic 40.0%
CTTGAAAGCAATGCTATTGC+AGG + chr4.2:40124427-40124446 None:intergenic 40.0%
GAAATTGTTCATGAGCCTCT+GGG - chr4.2:40124451-40124470 MS.gene056902:intron 40.0%
GCCATTAAAGTTATCCAAGG+GGG - chr4.2:40124857-40124876 MS.gene056902:CDS 40.0%
GGAAAATATGGAACTTGTGC+TGG - chr4.2:40125766-40125785 MS.gene056902:intron 40.0%
GGACTCACTTTCATCTTCTT+GGG - chr4.2:40125280-40125299 MS.gene056902:intron 40.0%
TAATGTGGCCTCAATTGCAA+CGG - chr4.2:40125025-40125044 MS.gene056902:intron 40.0%
TATTGAGCCAACAATCTTGG+TGG - chr4.2:40126195-40126214 MS.gene056902:intron 40.0%
TCATCTTGGAATTTGCCCTT+TGG - chr4.2:40124490-40124509 MS.gene056902:intron 40.0%
TCCCCCTTGGATAACTTTAA+TGG + chr4.2:40124861-40124880 None:intergenic 40.0%
TGGACTCACTTTCATCTTCT+TGG - chr4.2:40125279-40125298 MS.gene056902:intron 40.0%
TGTCAAAGGAGAATTTCCCA+TGG + chr4.2:40126751-40126770 None:intergenic 40.0%
TTAAATTGCAGTCACGGCAA+CGG - chr4.2:40124988-40125007 MS.gene056902:intron 40.0%
! GCGGACCTTTATTTAAAACC+TGG - chr4.2:40125102-40125121 MS.gene056902:intron 40.0%
! GCTATAGTGTTGGAATGTTG+TGG + chr4.2:40125985-40126004 None:intergenic 40.0%
! TTGGTGACTGAATGTGTCAA+AGG + chr4.2:40126765-40126784 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG - chr4.2:40126893-40126912 MS.gene056902:CDS 40.0%
!! GGCTTTATTGTCCAAGTAAG+TGG + chr4.2:40124840-40124859 None:intergenic 40.0%
AAAGTGAGTCCACAACTGCA+GGG + chr4.2:40125271-40125290 None:intergenic 45.0%
AATATCAGGTAGTGCACGAG+TGG - chr4.2:40125178-40125197 MS.gene056902:CDS 45.0%
ACACAACAACAGTAACGGCT+AGG + chr4.2:40125545-40125564 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG + chr4.2:40124421-40124440 None:intergenic 45.0%
AGCAGTGCAAATTATGGCTG+CGG - chr4.2:40125083-40125102 MS.gene056902:intron 45.0%
AGGTGGAATTGATGAAGGTG+TGG - chr4.2:40125935-40125954 MS.gene056902:intron 45.0%
ATAATGAGAACGACACCCAG+AGG + chr4.2:40124469-40124488 None:intergenic 45.0%
ATATCAGGTAGTGCACGAGT+GGG - chr4.2:40125179-40125198 MS.gene056902:CDS 45.0%
CACAACAACAGTAACGGCTA+GGG + chr4.2:40125544-40125563 None:intergenic 45.0%
CGAGCGTGTTATCAAGGATT+GGG + chr4.2:40125351-40125370 None:intergenic 45.0%
GCAGATAGTCTACCATTTGG+TGG - chr4.2:40126698-40126717 MS.gene056902:intron 45.0%
GCAGCAGATAGTCTACCATT+TGG - chr4.2:40126695-40126714 MS.gene056902:intron 45.0%
GCTGTGAAGCGAATTCTTGT+GGG - chr4.2:40125745-40125764 MS.gene056902:intron 45.0%
GTGACAAGAGACTCATAACC+AGG + chr4.2:40125123-40125142 None:intergenic 45.0%
GTGGATTTGGCATGTACCAT+GGG - chr4.2:40126732-40126751 MS.gene056902:intron 45.0%
TCGAGCGTGTTATCAAGGAT+TGG + chr4.2:40125352-40125371 None:intergenic 45.0%
TTTGCAGGTGGAGAAGATTG+AGG - chr4.2:40126446-40126465 MS.gene056902:intron 45.0%
! AGTCTACCATTTGGTGGAGT+AGG - chr4.2:40126704-40126723 MS.gene056902:intron 45.0%
! AGTGGATTTGGCATGTACCA+TGG - chr4.2:40126731-40126750 MS.gene056902:intron 45.0%
! GCTCTGTTGTTGTGCCTTTT+AGG - chr4.2:40125443-40125462 MS.gene056902:intron 45.0%
!! TTGTCTTTGGAGCCACTGAT+AGG - chr4.2:40124731-40124750 MS.gene056902:intron 45.0%
!!! TTGTTTTATTTTATTTTATA+AGG - chr4.2:40125915-40125934 MS.gene056902:intron 5.0%
AATGCCAGCAGCAAGTAGAG+AGG + chr4.2:40124816-40124835 None:intergenic 50.0%
ACCCAACTCCAGTGTTACAG+GGG + chr4.2:40125240-40125259 None:intergenic 50.0%
ACCCCTGTAACACTGGAGTT+GGG - chr4.2:40125236-40125255 MS.gene056902:intron 50.0%
CACCCAACTCCAGTGTTACA+GGG + chr4.2:40125241-40125260 None:intergenic 50.0%
CATGCAGGAGACAACTCTGA+AGG + chr4.2:40124791-40124810 None:intergenic 50.0%
CTGATAGGAGCTATAGCTGC+TGG - chr4.2:40124746-40124765 MS.gene056902:intron 50.0%
CTTCCACCTACTCCACCAAA+TGG + chr4.2:40126713-40126732 None:intergenic 50.0%
GAAAGTGAGTCCACAACTGC+AGG + chr4.2:40125272-40125291 None:intergenic 50.0%
GAGCGTGGCATAAAGTGCAA+GGG - chr4.2:40125370-40125389 MS.gene056902:CDS 50.0%
GCAAGTAGAGAGGAACATGC+AGG + chr4.2:40124806-40124825 None:intergenic 50.0%
GCAGCTATAGCTCCTATCAG+TGG + chr4.2:40124746-40124765 None:intergenic 50.0%
GGCTGTGAAGCGAATTCTTG+TGG - chr4.2:40125744-40125763 MS.gene056902:intron 50.0%
TATCAGGTAGTGCACGAGTG+GGG - chr4.2:40125180-40125199 MS.gene056902:CDS 50.0%
TGGAAAATGCCCTGCAGTTG+TGG - chr4.2:40125259-40125278 MS.gene056902:intron 50.0%
TTTGGTGGAGTAGGTGGAAG+TGG - chr4.2:40126713-40126732 MS.gene056902:intron 50.0%
! CTACCATTTGGTGGAGTAGG+TGG - chr4.2:40126707-40126726 MS.gene056902:intron 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG - chr4.2:40126719-40126738 MS.gene056902:intron 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG + chr4.2:40126929-40126948 None:intergenic 50.0%
! TGCTGGCATTGCCACTTACT+TGG - chr4.2:40124826-40124845 MS.gene056902:CDS 50.0%
! TGTTCCTCTCTACTTGCTGC+TGG - chr4.2:40124809-40124828 MS.gene056902:CDS 50.0%
! TTGCAACGGCGCTGTAGTTT+TGG - chr4.2:40125039-40125058 MS.gene056902:intron 50.0%
ACTCCAGTGTTACAGGGGTC+AGG + chr4.2:40125235-40125254 None:intergenic 55.0%
AGTTATCCAAGGGGGACCAC+AGG - chr4.2:40124865-40124884 MS.gene056902:CDS 55.0%
CACGCTCGAGCGTGTTATCA+AGG + chr4.2:40125357-40125376 None:intergenic 55.0%
CCACCCAACTCCAGTGTTAC+AGG + chr4.2:40125242-40125261 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG - chr4.2:40125239-40125258 MS.gene056902:intron 55.0%
CGAGCGTGGCATAAAGTGCA+AGG - chr4.2:40125369-40125388 MS.gene056902:CDS 55.0%
CTACAGCGCCGTTGCAATTG+AGG + chr4.2:40125036-40125055 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG - chr4.2:40125235-40125254 MS.gene056902:intron 55.0%
GGGGGATCCACCAAGATTGT+TGG + chr4.2:40126205-40126224 None:intergenic 55.0%
! CTTGATAACACGCTCGAGCG+TGG - chr4.2:40125355-40125374 MS.gene056902:CDS 55.0%
GCACCTGACCCCTGTAACAC+TGG - chr4.2:40125229-40125248 MS.gene056902:intron 60.0%
CGGATTCCTGTGGTCCCCCT+TGG + chr4.2:40124874-40124893 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 40124320 40127076 40124320 ID=MS.gene056902
chr4.2 mRNA 40124320 40127076 40124320 ID=MS.gene056902.t1;Parent=MS.gene056902
chr4.2 exon 40127062 40127076 40127062 ID=MS.gene056902.t1.exon1;Parent=MS.gene056902.t1
chr4.2 CDS 40127062 40127076 40127062 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40126885 40126981 40126885 ID=MS.gene056902.t1.exon2;Parent=MS.gene056902.t1
chr4.2 CDS 40126885 40126981 40126885 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40126461 40126667 40126461 ID=MS.gene056902.t1.exon3;Parent=MS.gene056902.t1
chr4.2 CDS 40126461 40126667 40126461 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40126086 40126210 40126086 ID=MS.gene056902.t1.exon4;Parent=MS.gene056902.t1
chr4.2 CDS 40126086 40126210 40126086 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40125550 40125654 40125550 ID=MS.gene056902.t1.exon5;Parent=MS.gene056902.t1
chr4.2 CDS 40125550 40125654 40125550 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40125287 40125459 40125287 ID=MS.gene056902.t1.exon6;Parent=MS.gene056902.t1
chr4.2 CDS 40125287 40125459 40125287 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40125114 40125204 40125114 ID=MS.gene056902.t1.exon7;Parent=MS.gene056902.t1
chr4.2 CDS 40125114 40125204 40125114 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40124794 40124943 40124794 ID=MS.gene056902.t1.exon8;Parent=MS.gene056902.t1
chr4.2 CDS 40124794 40124943 40124794 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40124528 40124704 40124528 ID=MS.gene056902.t1.exon9;Parent=MS.gene056902.t1
chr4.2 CDS 40124528 40124704 40124528 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
chr4.2 exon 40124320 40124361 40124320 ID=MS.gene056902.t1.exon10;Parent=MS.gene056902.t1
chr4.2 CDS 40124320 40124361 40124320 ID=cds.MS.gene056902.t1;Parent=MS.gene056902.t1
Gene Sequence

>MS.gene056902

ATGTCAAGCAAGAAGGTATGATCTATGTAAAACTAACGTGAAGAAAATATGTATATGTGAAGCCACTAATAACGAAATAATTTACTTTGATATAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTCTGGGTGTCGTTCTCATTATTTCATCTTGGAATTTGCCCTTTGGTGAGTTAATTATATACTAAGATACTTGTTGCTTTGAACTAAAATATCACATTCATTCAATTACTAGAAAAAGTTGGAACAACGGCAAAAATTTAGAGACGGAAAATTTACTGACCAAATTTATTTTTTCCACCTCTAATTTTTTTCGTTATTCTGTTAGAGTCTTCATAAATTTTGGCTAGTAACATAATATTATGTAACCAATAAAAAAACACAGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGCAGCAGTGTTAAAACCTTCAGAGTTGTCTCCTGCATGTTCCTCTCTACTTGCTGCTGGCATTGCCACTTACTTGGACAATAAAGCCATTAAAGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTCAACATTACCCAAATATTTTTCATCGCCACTTTTAGATTTTGAGCAGATTTTAAATTGCAGTCACGGCAACGGTGACATTCATGTTTTAATGTGGCCTCAATTGCAACGGCGCTGTAGTTTTGGCAATATCAAAAACTATTATGAAGCAGTGCAAATTATGGCTGCGGACCTTTATTTAAAACCTGGTTATGAGTCTCTTGTCACAATTTTTGATGAGTTTTTTTCTTATTGTAAAAACTAATATCAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGAGTTGATTCATTTTCATTTTTCACTATAGTATGTCCCAATCCTTGATAACACGCTCGAGCGTGGCATAAAGTGCAAGGGCATACACTTCAAGAGTAAACTTGTAAACTAAATCGTAATACTTGAATAAAGCTCTGTTGTTGTGCCTTTTAGGTTTCTAAGTCCATCGGGTTTTACTATATATTTGTTTGTAACCTTTATTATGTCATGCCGTTGTAATCTTATGAAGCCCTAGCCGTTACTGTTGTTGTGTTATTCCTTCTTCTATTTGATTCTCTATATCGTTAACATCTATTACCTTAATTTATCGGATAAAAGAAAACAACGGTAACAAACTTGTTGGAGATGTATGCATAATTGTCCCACAAGTTACATTTGATTAAGTTGGTTGATTCTAATTATCAATGTAACAATTTCTGGTGATTATAAGGTGGCTGTGAAGCGAATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATCGTCGAAAAGAGTTGCTGTTCAAAACTGGTACATCTCTTAAATTCAAGTATTCAAGTTCACTGTTATGTAAGTTTTTGATTATACTTACTCTTGTTTTGTTTTATTTTATTTTATAAGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAATGTTCAAGAATCTGTTGTTTATGGTGGCTCAATTGACGAAGAAAACTTGTAAATAACACCCTGCCTTTCACATACTAATATTCCTAAATTCCTATCACCAAAAAAACAACATGTGCTCAAATATGTGCAGATTTATTGAGCCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCACTACTTCCAATTATTACTGTAAGTTTCATTGCATAAATAATGACACTAATGACTATTTTACAAATGTCTGGTATGGATCTTGACGTTACAAAATCAAACTCTTTCGACTTAGTTTTACCACATGCTTATATCTATCTTTTCTCTCACTTAAGTTCCATTTATTTTATCTTTTGCATAATAATTTGCAGGTGGAGAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAACCTCTTGCTCTTTATGTTTTCACCAAAAACCAAACATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAAGTAGAACTTTACACACTTCAATTTTTCACATACCACTTTATATTAATGTTCAAATACATAACTTAATGTGCATAATTTGTTGTTTACAGTATGCAGCAGATAGTCTACCATTTGGTGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAGTTAATTAGCGGGTGCTGTATGTTAGTATTATTATATATCTTAAAATCTTAATATTTATGAGTTTGCAACTCTTATGTAGGTTGATATGTTTTCGGTATTTTTGCGCAACTATGCATACTAA

Protein sequence

>MS.gene056902.t1

MSSKKAPLPAIALLSSAEIVHEPLGVVLIISSWNLPFGLSLEPLIGAIAAGNAAVLKPSELSPACSSLLAAGIATYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNKQHLTRLKKLLDDQNVQESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQNRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVDMFSVFLRNYAY