AlfalfaGEDB | MS.gene44687

M. sativa cultivar XinJiangDaYe / MS.gene44687

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44687.t1	XP_013447634.1	62.9	685	39	3	1	470	205	889	4.80E-219	770.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44687.t1	Q9SCZ4	52.9	378	152	8	109	470	528	895	2.5e-99	364.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44687.t1	A0A072U790	62.9	685	39	3	1	470	205	889	3.5e-219	770.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene44687	0.802526	5.38E-49	-1.69E-46
MS.gene052011	MS.gene44687	-0.815405	9.40E-52	-1.69E-46
MS.gene054102	MS.gene44687	0.809288	2.04E-50	-1.69E-46
MS.gene054183	MS.gene44687	0.807908	4.02E-50	-1.69E-46
MS.gene055217	MS.gene44687	0.832361	9.88E-56	-1.69E-46
MS.gene057833	MS.gene44687	0.810689	1.02E-50	-1.69E-46
MS.gene057843	MS.gene44687	0.809338	1.99E-50	-1.69E-46
MS.gene05886	MS.gene44687	0.808019	3.80E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44687.t1	MTR_7g015390	93.699	365	20	1	109	470	525	889	0.0	717
MS.gene44687.t1	MTR_7g015390	90.385	52	5	0	55	106	359	410	5.33e-22	100
MS.gene44687.t1	MTR_7g015390	76.364	55	13	0	1	55	205	259	1.05e-18	89.7
MS.gene44687.t1	MTR_7g015670	89.589	365	35	1	109	470	528	892	0.0	681
MS.gene44687.t1	MTR_7g015670	70.909	55	16	0	1	55	204	258	2.74e-17	85.5
MS.gene44687.t1	MTR_7g015670	56.944	72	28	1	55	123	358	429	1.95e-14	76.3
MS.gene44687.t1	MTR_7g015550	83.198	369	50	4	109	470	525	888	0.0	634
MS.gene44687.t1	MTR_7g015550	67.273	55	18	0	1	55	205	259	6.72e-15	77.8
MS.gene44687.t1	MTR_7g015550	66.038	53	18	0	56	108	360	412	4.82e-14	75.1
MS.gene44687.t1	MTR_7g015510	82.927	369	51	4	109	470	525	888	0.0	632

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44687.t1	AT3G51550	52.910	378	152	8	109	470	528	895	1.06e-120	374
MS.gene44687.t1	AT3G04690	50.394	381	167	6	67	427	462	840	1.55e-116	362
MS.gene44687.t1	AT5G28680	54.386	342	146	5	67	400	466	805	6.05e-115	358
MS.gene44687.t1	AT5G28680	54.386	342	146	5	67	400	466	805	6.05e-115	358
MS.gene44687.t1	AT5G39000	49.602	377	162	6	109	470	510	873	3.47e-110	346
MS.gene44687.t1	AT5G38990	48.806	377	165	6	109	470	517	880	3.10e-108	341
MS.gene44687.t1	AT4G39110	52.000	325	149	4	73	393	481	802	1.59e-104	331
MS.gene44687.t1	AT2G21480	51.692	325	150	4	73	393	480	801	2.14e-102	325
MS.gene44687.t1	AT2G39360	51.485	303	141	4	104	402	474	774	1.56e-101	322
MS.gene44687.t1	AT3G46290	48.991	347	166	4	104	441	472	816	3.70e-100	318

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Find 91 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATTGTCGTTAAGACT+TGG	0.513526	7.3:+82504534	None:intergenic
AAATGATAATCTGGGTCATT+GGG	0.336255	7.3:+82504588	None:intergenic
AACACCGAAGGAGTAGACGT+CGG	0.744417	7.3:+82503082	None:intergenic
AACACCGTTGCAGAAAACAA+AGG	0.699066	7.3:+82502612	None:intergenic
AAGAGACTTGAGATTCTAAT+GGG	0.466677	7.3:-82503341	MS.gene44687:CDS
AAGCATTGTCGTTAAGACTT+GGG	0.557188	7.3:+82504535	None:intergenic
AAGTCCGACGTCTACTCCTT+CGG	0.489587	7.3:-82503086	MS.gene44687:CDS
AAGTCTTAACGACAATGCTT+TGG	0.475111	7.3:-82504532	MS.gene44687:CDS
AATATTCATAGCTAATACTT+TGG	0.382418	7.3:-82504159	MS.gene44687:intron
AATGATAATCTGGGTCATTG+GGG	0.613261	7.3:+82504589	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGATAATCTGGGTCATT+GGG	+	chr7.3:82502611-82502630	None:intergenic	30.0%
AAGAGACTTGAGATTCTAAT+GGG	-	chr7.3:82503855-82503874	MS.gene44687:intron	30.0%
ATATGGTATCCTTTATGAAC+GGG	+	chr7.3:82504265-82504284	None:intergenic	30.0%
ATGAAACTACAACAACAACA+AGG	+	chr7.3:82503371-82503390	None:intergenic	30.0%
ATTCATAGCTAATACTTTGG+CGG	-	chr7.3:82503040-82503059	MS.gene44687:CDS	30.0%
ATTGTTAGATGATAAATGGG+TGG	-	chr7.3:82503956-82503975	MS.gene44687:intron	30.0%
GACTCATGAAAAGGAAAAAA+GGG	-	chr7.3:82504433-82504452	MS.gene44687:intron	30.0%
GATATGGTATCCTTTATGAA+CGG	+	chr7.3:82504266-82504285	None:intergenic	30.0%
GATTTCGGTTTATCAAAAGT+GGG	-	chr7.3:82503990-82504009	MS.gene44687:intron	30.0%
TGATTTCGGTTTATCAAAAG+TGG	-	chr7.3:82503989-82504008	MS.gene44687:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	82502581	82504637	82502581	ID=MS.gene44687
chr7.3	mRNA	82502581	82504637	82502581	ID=MS.gene44687.t1;Parent=MS.gene44687
chr7.3	exon	82504475	82504637	82504475	ID=MS.gene44687.t1.exon1;Parent=MS.gene44687.t1
chr7.3	CDS	82504475	82504637	82504475	ID=cds.MS.gene44687.t1;Parent=MS.gene44687.t1
chr7.3	exon	82504012	82504170	82504012	ID=MS.gene44687.t1.exon2;Parent=MS.gene44687.t1
chr7.3	CDS	82504012	82504170	82504012	ID=cds.MS.gene44687.t1;Parent=MS.gene44687.t1
chr7.3	exon	82502581	82503671	82502581	ID=MS.gene44687.t1.exon3;Parent=MS.gene44687.t1
chr7.3	CDS	82502581	82503671	82502581	ID=cds.MS.gene44687.t1;Parent=MS.gene44687.t1

Gene Sequence

>MS.gene44687

ATGCCTTCTTTTCTCTATTACACAAACCCCAATGACCCAGATTATCATTTGAAATCACTTGACGTAGACAACAGTGATTACCCAAGTCTTAACGACAATGCTTTGGAGATTGTTTATAGAGTCAATGTTGGAGATAATCAAGTTCCTGCAAACCAAGATACAGGTATGTTTCGTAGTTGGGACAATGATTTTCCTCTTTACTTGGAGAAAAAAATATCTAAATAGTGTATCAAGTGTTTATGGAAGTGATCATCTAAACTATTTAAACAATACCATTCCAAATTACATTGCACCAGAAGCTGTTTACTTAACTGCAAGAAGTCGTGGATTGGATGAGACAGAGGATTTCAATGTAACTTGGAATTTCGAAGTTGATGTTGGTTTTACTTATATGTTAAGGTTGCATTTTTGTGAGTTTGATCAGCATATCAAAAATAAAGGTGATAGAGTCTTTCAAATATTCATAGCTAATACTTTGGCGGAGATAAACGCTGATGTGATTGATTGGAGTACTGCTCCTATGGTTCCTGTTCATAATGATTATGTTGTGTCTATGTACTCTCAAGAAGGAAGCTCTCAAATTGAAAGACTTAATCTTTCAATCAAGCTACAACGAGCACCAGAACGTATCTACACAAGATACAGTGATGCCACATTGAATGGCATCGAGATTTTGAAAATAAATGATAAAAATGATAATCTCTTTGGATCAAATCCAAAACTTAATATATCTTCCAAAGGAAAATGTTTTACCAACTAAACAACAGAAGAAATCAACAACAGTTATCCTTGTTGTTGTTGTAGTTTCATGTCTCTTGCTAGCATTTGTTGTTGTGGGAATCATCGTTTAAGCTAGAAGGAGAAGAAGACTTGAATCTTATATTGAAATGGAAGAAAGTTCATGGAGGACAAGAAAAGAAGGTTCATGAACTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCGGAGATAAGAGCCGCTACAAACAACTTCGAAGATATTTTTATCATTGGGTTTGGTAACATGTTCAAAGGTTACATCGATGAAGGTACACCCGTAGCAATAAAACGTTTGAAACCAGGTTCTCAACAAGGTGTAGACGAGTTCATGAATGAAATAGAGTTACTCTCTCAGCTTCGTCATATTCACTTGGTTTCACTCATTGGATATTGCAACGAAGGTGCAGAGATGATTCTTGTTTATGACTTCATGGAACGTGGCACTCTTCGTGAATATCTCTATGGTTCAGATAACGAACCTCTTACTTGGAAGAAGAGACTTGAGATTCTAATGGGTGCGGCAAGGGGTTTGCATTATCTTCATGCAGGTGCGAAGCACAATATCATACACCGTGATGTGAAGAGTACCAACATATTGTTAGATGATAAATGGGTGGCTAAGGTTTCTGATTTCGGTTTATCAAAAGTGGGTCCAACAGGAATGTCGATGACCCACGTCAGCACTAAGGTGAAGGGTAGTCTCGGGTATTTAGATCCCGAATACTACCTTCGTCAAAGGTTGACTCTAAAGTCCGACGTCTACTCCTTCGGTGTTGTGCTTCTTGAGGTGTTGTGTGCGAGACCACCTTTGGTTCGTTCATTGGAAAAGAAAAAAGCGAGTTTAGTATTTTGGTTCCAAAGATGTTACAATGAAGGTGTGATCATTGAAGAGATGGTGGACCCGTTCATAAAGGATACCATATCAAGTGAGTGTTTGAAATGCTATTGTCAAATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAACGAATGTCGATGAGTGATGTGGTTGGAGCTTTTGAGTTTGCATTGCAGTTGGAGATGAGTGAGGATGATACTAAGTTTGTTTGGACTCATGAAAAGGAAAAAAGGGAGGAAAGACAACAAGTGTCGCAGTTTACAAGTGAAGATGGAAGTGATGTTCGTTTCACGAGTAGCAGTGATGATTATGAGACTCAAATAAGCAAGGTAAGAACCAATTCAGCCAGTACTGAAGAACAACCTTTGTTTTCTGCAACGGTGTTTTCTGAGATTGGGAATCCAAGAGCACGATAG

Protein sequence

>MS.gene44687.t1

MPSFLYYTNPNDPDYHLKSLDVDNSDYPSLNDNALEIVYRVNVGDNQVPANQDTANTLAEINADVIDWSTAPMVPVHNDYVVSMYSQEGSSQIERLNLSIKLQRAPEPEIRAATNNFEDIFIIGFGNMFKGYIDEGTPVAIKRLKPGSQQGVDEFMNEIELLSQLRHIHLVSLIGYCNEGAEMILVYDFMERGTLREYLYGSDNEPLTWKKRLEILMGAARGLHYLHAGAKHNIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGMSMTHVSTKVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCARPPLVRSLEKKKASLVFWFQRCYNEGVIIEEMVDPFIKDTISSECLKCYCQMVLSCLHDDGNQRMSMSDVVGAFEFALQLEMSEDDTKFVWTHEKEKREERQQVSQFTSEDGSDVRFTSSSDDYETQISKVRTNSASTEEQPLFSATVFSEIGNPRAR