AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44835

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44835.t1 MTR_5g069055 98.575 351 5 0 21 371 8 358 0.0 705
MS.gene44835.t1 MTR_5g069050 93.429 350 8 1 22 371 50 384 0.0 657
MS.gene44835.t1 MTR_1g061050 87.679 349 43 0 23 371 10 358 0.0 630
MS.gene44835.t1 MTR_5g096670 78.348 351 75 1 21 371 8 357 0.0 556
MS.gene44835.t1 MTR_4g057670 56.857 350 146 4 23 371 55 400 1.63e-133 387
MS.gene44835.t1 MTR_4g071860 56.857 350 146 4 23 371 55 400 3.03e-133 387
MS.gene44835.t1 MTR_1g109200 54.857 350 153 4 23 371 46 391 6.48e-131 380
MS.gene44835.t1 MTR_4g071880 51.558 353 148 6 23 371 53 386 8.04e-113 334
MS.gene44835.t1 MTR_7g103920 67.708 96 6 1 125 220 11 81 1.75e-35 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44835.t1 AT3G52930 88.604 351 40 0 21 371 8 358 0.0 642
MS.gene44835.t1 AT2G36460 86.895 351 46 0 21 371 8 358 0.0 628
MS.gene44835.t1 AT5G03690 86.364 352 47 1 21 371 8 359 0.0 605
MS.gene44835.t1 AT5G03690 86.819 349 45 1 24 371 45 393 0.0 602
MS.gene44835.t1 AT4G26530 76.638 351 82 0 21 371 8 358 0.0 554
MS.gene44835.t1 AT4G26530 76.638 351 82 0 21 371 8 358 0.0 554
MS.gene44835.t1 AT4G26530 76.638 351 82 0 21 371 8 358 0.0 554
MS.gene44835.t1 AT4G26520 70.423 355 105 0 17 371 1 355 0.0 505
MS.gene44835.t1 AT4G26520 70.423 355 105 0 17 371 1 355 0.0 505
MS.gene44835.t1 AT4G26520 71.347 349 100 0 23 371 10 358 1.77e-180 505
MS.gene44835.t1 AT4G26520 71.470 347 99 0 23 369 10 356 6.08e-179 501
MS.gene44835.t1 AT2G36460 87.266 267 34 0 105 371 1 267 4.34e-174 485
MS.gene44835.t1 AT2G36460 87.266 267 34 0 105 371 1 267 4.34e-174 485
MS.gene44835.t1 AT5G03690 86.517 267 35 1 106 371 1 267 1.88e-162 456
MS.gene44835.t1 AT5G03690 86.517 267 35 1 106 371 1 267 1.88e-162 456
MS.gene44835.t1 AT2G21330 56.818 352 147 4 21 371 52 399 5.36e-134 389
MS.gene44835.t1 AT4G38970 56.534 352 148 4 21 371 51 398 6.89e-134 388
MS.gene44835.t1 AT2G01140 55.429 350 151 4 23 371 46 391 1.38e-131 382
MS.gene44835.t1 AT2G21330 54.830 352 144 5 21 371 52 389 3.49e-125 366
MS.gene44835.t1 AT4G38970 56.420 257 110 2 21 276 51 306 7.85e-96 291
MS.gene44835.t1 AT2G21330 55.642 257 112 2 21 276 52 307 4.92e-95 286

Find 115 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGACCCTTTCCTTCTCTTT+TGG 0.209134 5.2:-58521097 MS.gene44835:CDS
CTTACCCTTGACTTGGTTGA+TGG 0.263243 5.2:+58521126 None:intergenic
TGGTGTGCTTCCTGGTATTA+AGG 0.315416 5.2:-58521677 MS.gene44835:CDS
AACGAAGCTGGTGTGCTTCC+TGG 0.322802 5.2:-58521685 MS.gene44835:CDS
GAGTGCTCAGATGGCTCATT+GGG 0.370466 5.2:+58521514 None:intergenic
ACCACCACTCAGGGTCTTGA+TGG 0.384125 5.2:-58521613 MS.gene44835:CDS
TAGACGCTTTCCAATTGTTC+CGG 0.385779 5.2:+58522447 None:intergenic
AGCAGCAAGAATACCTTTGC+CGG 0.388344 5.2:+58522480 None:intergenic
ACCTTTGGTGCATCAGATCC+AGG 0.397934 5.2:+58521274 None:intergenic
GCTTCAAGAGAGTGCCTTCA+AGG 0.401651 5.2:+58521311 None:intergenic
GATGAGTCAACCGGAACAAT+TGG 0.403195 5.2:-58522457 MS.gene44835:CDS
GGTGGTTTCTCCATCAGTTC+CGG 0.405974 5.2:+58521630 None:intergenic
GAGCCTGAGATCCTTGTTGA+TGG 0.408703 5.2:-58521418 MS.gene44835:CDS
ACAACCTCGGGTGCAACCTT+TGG 0.418995 5.2:+58521259 None:intergenic
GGTGTCCTTCAGTACCTTAG+TGG 0.421088 5.2:-58522355 MS.gene44835:CDS
AAGGGTACCGTTGAGCTTGC+CGG 0.426023 5.2:-58521649 MS.gene44835:CDS
GATCCAGGGGTAACCATGTT+AGG 0.432972 5.2:+58521289 None:intergenic
CTGCAGCGGTGCTTTGGTAG+AGG 0.433294 5.2:+58522311 None:intergenic
GACCACCATGTCCTCCTTGA+AGG 0.437194 5.2:-58521325 MS.gene44835:CDS
AGTACCCTCAAGGCATGGTC+TGG 0.442363 5.2:-58521058 MS.gene44835:CDS
TTGGCATATGACTGCATATC+GGG 0.442827 5.2:+58521465 None:intergenic
TAGTGGAGTCATCCTCTTTG+AGG 0.444154 5.2:-58522338 MS.gene44835:CDS
AGGATCTCAGGCTCAACAAT+TGG 0.457558 5.2:+58521427 None:intergenic
ATGGCTTCTTACCCTTGACT+TGG 0.461709 5.2:+58521119 None:intergenic
GGACACCAGGGGCGGTGAAA+AGG 0.463623 5.2:+58522371 None:intergenic
AGAGTGCTCAGATGGCTCAT+TGG 0.465315 5.2:+58521513 None:intergenic
CCATGAGAATGCCTATGGTT+TGG 0.465357 5.2:-58521488 MS.gene44835:CDS
GCTAATTCTGAGGCTACTCT+TGG 0.466145 5.2:-58520983 MS.gene44835:CDS
CTCAAGAAGCTTTGTTGACA+AGG 0.466664 5.2:-58521012 MS.gene44835:CDS
TGGCGTGCAGTGCTTAAAAT+CGG 0.467744 5.2:-58521538 MS.gene44835:CDS
GAGGACATGGTGGTCATTCA+AGG 0.470656 5.2:+58521333 None:intergenic
CTCTACCAAAGCACCGCTGC+AGG 0.473908 5.2:-58522310 MS.gene44835:intron
CCAGACAAGAAAACAACAGC+TGG 0.481066 5.2:+58521187 None:intergenic
AAGTACCTGCAGCGGTGCTT+TGG 0.482170 5.2:+58522305 None:intergenic
TACAAGGGTAACTCTAAACT+TGG 0.485439 5.2:-58520956 MS.gene44835:CDS
GTGTGCTCAGCAACAACCTC+GGG 0.487306 5.2:+58521247 None:intergenic
AGCTTTGTTGACAAGGGCTA+AGG 0.490730 5.2:-58521005 MS.gene44835:CDS
TGCAGCGGTGCTTTGGTAGA+GGG 0.495649 5.2:+58522312 None:intergenic
TTGGTACAAGTCCATTCTCT+TGG 0.496399 5.2:+58521446 None:intergenic
GTTGATGTCTTGAACGAAGC+TGG 0.500977 5.2:-58521697 MS.gene44835:CDS
AGCTGGGACTGCAGCAGGTA+CGG 0.503571 5.2:+58521204 None:intergenic
TTTGCCGGGTGTGCCGATGT+AGG 0.503875 5.2:+58522495 None:intergenic
GCTGCCTACATCGGCACACC+CGG 0.503985 5.2:-58522499 MS.gene44835:CDS
CTTGCTGCTGATGAGTCAAC+CGG 0.504792 5.2:-58522466 MS.gene44835:CDS
CTTGGCATATGACTGCATAT+CGG 0.504914 5.2:+58521464 None:intergenic
TGTGCCGATGTAGGCAGCAT+TGG 0.506890 5.2:+58522504 None:intergenic
GTTGAGCTTGCCGGAACTGA+TGG 0.507933 5.2:-58521640 MS.gene44835:CDS
GGTCCATCAACAAGGATCTC+AGG 0.508887 5.2:+58521415 None:intergenic
GGGCGGTGAAAAGGAGTTCA+CGG 0.513566 5.2:+58522380 None:intergenic
GCAGTCATATGCCAAGAGAA+TGG 0.513764 5.2:-58521457 MS.gene44835:CDS
CCCTTCCAAAAGAGAAGGAA+AGG 0.518782 5.2:+58521092 None:intergenic
ACAACAGCTGGGACTGCAGC+AGG 0.520425 5.2:+58521199 None:intergenic
TGTCCTTGCAGCATGCTACA+AGG 0.521812 5.2:-58521356 MS.gene44835:CDS
CCCTGGATCTGATGCACCAA+AGG 0.525088 5.2:-58521275 MS.gene44835:CDS
CTAAGGTACTGAAGGACACC+AGG 0.526807 5.2:+58522358 None:intergenic
TCGTTCAAGACATCAACAAA+AGG 0.529185 5.2:+58521703 None:intergenic
TGGTGGACAGAGTGAGGAAG+AGG 0.529702 5.2:-58521167 MS.gene44835:CDS
TCTATCCATGAGAATGCCTA+TGG 0.529948 5.2:-58521493 MS.gene44835:CDS
TGACTTGGTTGATGGCATTG+AGG 0.532962 5.2:+58521134 None:intergenic
GGCTACTCTTGGAACTTACA+AGG 0.533473 5.2:-58520972 MS.gene44835:CDS
ATTGCCAATGCTGCCTACAT+CGG 0.536003 5.2:-58522508 MS.gene44835:CDS
GGTAACTCTAAACTTGGTGC+TGG 0.539715 5.2:-58520950 MS.gene44835:CDS
AAGCCTAACATGGTTACCCC+TGG 0.543234 5.2:-58521292 MS.gene44835:CDS
TTCACGGAGAGCACGTCTGT+TGG 0.544051 5.2:+58522396 None:intergenic
CACTCTCTTGAAGCCTAACA+TGG 0.547031 5.2:-58521302 MS.gene44835:CDS
CCAAACCATAGGCATTCTCA+TGG 0.550708 5.2:+58521488 None:intergenic
AAAGAGAAGGAAAGGGTCCA+TGG 0.554272 5.2:+58521100 None:intergenic
AAGTCAAGGGTAAGAAGCCA+TGG 0.558340 5.2:-58521117 MS.gene44835:CDS
TGTGCTAAGTACTATGAAGC+AGG 0.559793 5.2:-58521577 MS.gene44835:CDS
TCCTGGTATTAAGGTTGACA+AGG 0.560036 5.2:-58521668 MS.gene44835:CDS
ACTCAGGGTCTTGATGGACT+TGG 0.562479 5.2:-58521607 MS.gene44835:CDS
CTTGTCTGGTGGACAGAGTG+AGG 0.562758 5.2:-58521173 MS.gene44835:CDS
CTCAGAGAGTCTTCATGTGA+AGG 0.562837 5.2:-58520924 MS.gene44835:CDS
TGATGGAGAAACCACCACTC+AGG 0.570496 5.2:-58521623 MS.gene44835:CDS
CCCTTGTCAACCTTAATACC+AGG 0.572245 5.2:+58521667 None:intergenic
GCAGCAAGAATACCTTTGCC+GGG 0.573486 5.2:+58522481 None:intergenic
GATGGCATTGAGGTTGACAC+TGG 0.575533 5.2:+58521144 None:intergenic
GGTAGAGGGTTTCCTCAAAG+AGG 0.575881 5.2:+58522326 None:intergenic
TCATGGATAGAGTGCTCAGA+TGG 0.581969 5.2:+58521505 None:intergenic
CCTTTGGTGCATCAGATCCA+GGG 0.582593 5.2:+58521275 None:intergenic
GATGGAGAAACCACCACTCA+GGG 0.584183 5.2:-58521622 MS.gene44835:CDS
CAATGCCATCAACCAAGTCA+AGG 0.584504 5.2:-58521131 MS.gene44835:CDS
ATCAGTTCCGGCAAGCTCAA+CGG 0.584893 5.2:+58521642 None:intergenic
TACATCGGCACACCCGGCAA+AGG 0.585962 5.2:-58522493 MS.gene44835:CDS
GAGTGCCTTCAAGGAGGACA+TGG 0.586352 5.2:+58521320 None:intergenic
TGCACCAAAGGTTGCACCCG+AGG 0.589398 5.2:-58521263 MS.gene44835:CDS
CAAAGAGGATGACTCCACTA+AGG 0.590051 5.2:+58522341 None:intergenic
TGACTCCACTAAGGTACTGA+AGG 0.592512 5.2:+58522350 None:intergenic
GCATGCTGCAAGGACACGCT+CGG 0.593245 5.2:+58521363 None:intergenic
TGCATATCGGGCCAAACCAT+AGG 0.596299 5.2:+58521477 None:intergenic
AAGTGCCCTTCCAAAAGAGA+AGG 0.603752 5.2:+58521087 None:intergenic
AACAGAGTACCCTCAAGGCA+TGG 0.603839 5.2:-58521063 MS.gene44835:CDS
AATGCCATCAACCAAGTCAA+GGG 0.616498 5.2:-58521130 MS.gene44835:CDS
CCTTCCAAAAGAGAAGGAAA+GGG 0.621042 5.2:+58521093 None:intergenic
TCCATCAAGACCCTGAGTGG+TGG 0.624702 5.2:+58521612 None:intergenic
AGGCCTTGTAGCATGCTGCA+AGG 0.628730 5.2:+58521353 None:intergenic
TGTCATGAGGTCCATCAACA+AGG 0.633917 5.2:+58521407 None:intergenic
AGTGTGCTCAGCAACAACCT+CGG 0.636805 5.2:+58521246 None:intergenic
TGCCTTCAAGGAGGACATGG+TGG 0.637134 5.2:+58521323 None:intergenic
TCAAGAAGCTTTGTTGACAA+GGG 0.640371 5.2:-58521011 MS.gene44835:CDS
CAGACAAGAAAACAACAGCT+GGG 0.641298 5.2:+58521188 None:intergenic
AAGGGCTAAGGCTAATTCTG+AGG 0.650952 5.2:-58520993 MS.gene44835:CDS
CTTTGGTGCATCAGATCCAG+GGG 0.655083 5.2:+58521276 None:intergenic
AAGTCCATCAAGACCCTGAG+TGG 0.657276 5.2:+58521609 None:intergenic
GCTACTCTTGGAACTTACAA+GGG 0.661396 5.2:-58520971 MS.gene44835:CDS
TGGAAAAGAAGAAAATGTGA+AGG 0.663229 5.2:-58521038 MS.gene44835:CDS
CCTGGTATTAAGGTTGACAA+GGG 0.671309 5.2:-58521667 MS.gene44835:CDS
ACTTCAACAGAGTACCCTCA+AGG 0.678437 5.2:-58521068 MS.gene44835:CDS
TAAGGTACTGAAGGACACCA+GGG 0.689754 5.2:+58522359 None:intergenic
TAGGAAGTAAGTACCTGCAG+CGG 0.691298 5.2:+58522297 None:intergenic
AGTGCTCAGATGGCTCATTG+GGG 0.704686 5.2:+58521515 None:intergenic
CTTCACATGAAGACTCTCTG+AGG 0.707482 5.2:+58520925 None:intergenic
TCAAGAGAGTGCCTTCAAGG+AGG 0.717476 5.2:+58521314 None:intergenic
AAGGTACTGAAGGACACCAG+GGG 0.750874 5.2:+58522360 None:intergenic
GTACTGAAGGACACCAGGGG+CGG 0.769749 5.2:+58522363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATGAAATTGTAAATCA+GGG - chr5.2:58521117-58521136 MS.gene44835:CDS 15.0%
!! TATTTATGAAATTGTAAATC+AGG - chr5.2:58521116-58521135 MS.gene44835:CDS 15.0%
!!! TACATGAATGTATTTTTTTT+AGG - chr5.2:58522125-58522144 MS.gene44835:intron 15.0%
!! AAATCAAGTAGATCTATTTA+AGG - chr5.2:58521146-58521165 MS.gene44835:CDS 20.0%
!! ATTTATATCAAAACCCTTTA+AGG + chr5.2:58521085-58521104 None:intergenic 20.0%
!!! GTCTAATCATGATTAATTTT+GGG - chr5.2:58521242-58521261 MS.gene44835:CDS 20.0%
!!! TGTCTAATCATGATTAATTT+TGG - chr5.2:58521241-58521260 MS.gene44835:CDS 20.0%
!!! TTTGTTCTGTTTTATTTGTA+TGG - chr5.2:58520950-58520969 MS.gene44835:CDS 20.0%
! CATATAAGAAAACGTGTTAA+AGG + chr5.2:58521852-58521871 None:intergenic 25.0%
! GTAAATATTGTTCAGATTGT+AGG + chr5.2:58521587-58521606 None:intergenic 25.0%
! TGCTTTGTATTGTAAAAGTT+TGG - chr5.2:58521710-58521729 MS.gene44835:CDS 25.0%
! TTAATTAGATTGTTGCAGTA+AGG - chr5.2:58521275-58521294 MS.gene44835:CDS 25.0%
!! ATGTATTGATGAACAATTCA+AGG + chr5.2:58521640-58521659 None:intergenic 25.0%
!!! TCTGTTTTATTTGTATGGAT+CGG - chr5.2:58520955-58520974 MS.gene44835:CDS 25.0%
AAATAGTGATCCATCATGTT+AGG - chr5.2:58521905-58521924 MS.gene44835:intron 30.0%
AGTAAGGTTTATAGTTGTGT+TGG - chr5.2:58521291-58521310 MS.gene44835:CDS 30.0%
ATCTATTGCTTTGTGAAGTT+TGG - chr5.2:58521805-58521824 MS.gene44835:intron 30.0%
CATTACATCAGATCCTTAAA+GGG - chr5.2:58521069-58521088 MS.gene44835:CDS 30.0%
TATTGTAAAAGTTTGGATCG+TGG - chr5.2:58521717-58521736 MS.gene44835:intron 30.0%
TCATTACATCAGATCCTTAA+AGG - chr5.2:58521068-58521087 MS.gene44835:CDS 30.0%
TGGAAAAGAAGAAAATGTGA+AGG - chr5.2:58522817-58522836 MS.gene44835:intron 30.0%
! TTCTTGATTGCTTCTTTTTG+TGG - chr5.2:58522058-58522077 MS.gene44835:intron 30.0%
!!! ACATTTTTTGCATCCCAAAA+AGG + chr5.2:58521986-58522005 None:intergenic 30.0%
!!! ATTTTTTGCATCCCAAAAAG+GGG + chr5.2:58521984-58522003 None:intergenic 30.0%
!!! CATTTTTTGCATCCCAAAAA+GGG + chr5.2:58521985-58522004 None:intergenic 30.0%
TACAAGGGTAACTCTAAACT+TGG - chr5.2:58522899-58522918 MS.gene44835:intron 35.0%
TCGTTCAAGACATCAACAAA+AGG + chr5.2:58522155-58522174 None:intergenic 35.0%
TCTATTGCTTCCTAACATGA+TGG + chr5.2:58521918-58521937 None:intergenic 35.0%
TTGTATGGATCGGTAATTGT+TGG - chr5.2:58520965-58520984 MS.gene44835:CDS 35.0%
TTGTTCAGATTGTAGGAACT+AGG + chr5.2:58521580-58521599 None:intergenic 35.0%
!! TCAAGAAGCTTTGTTGACAA+GGG - chr5.2:58522844-58522863 MS.gene44835:intron 35.0%
!!! TTTTTTGCATCCCAAAAAGG+GGG + chr5.2:58521983-58522002 None:intergenic 35.0%
AATGCCATCAACCAAGTCAA+GGG - chr5.2:58522725-58522744 MS.gene44835:intron 40.0%
ATCAAGAACAGCTTCTAAGC+AGG + chr5.2:58522046-58522065 None:intergenic 40.0%
CAGACAAGAAAACAACAGCT+GGG + chr5.2:58522670-58522689 None:intergenic 40.0%
CCTGGTATTAAGGTTGACAA+GGG - chr5.2:58522188-58522207 MS.gene44835:intron 40.0%
CCTTCCAAAAGAGAAGGAAA+GGG + chr5.2:58522765-58522784 None:intergenic 40.0%
CTTGGCATATGACTGCATAT+CGG + chr5.2:58522394-58522413 None:intergenic 40.0%
GCTACTCTTGGAACTTACAA+GGG - chr5.2:58522884-58522903 MS.gene44835:intron 40.0%
TAGACGCTTTCCAATTGTTC+CGG + chr5.2:58521411-58521430 None:intergenic 40.0%
TCCTGGTATTAAGGTTGACA+AGG - chr5.2:58522187-58522206 MS.gene44835:intron 40.0%
TCTATCCATGAGAATGCCTA+TGG - chr5.2:58522362-58522381 MS.gene44835:CDS 40.0%
TGTGCTAAGTACTATGAAGC+AGG - chr5.2:58522278-58522297 MS.gene44835:intron 40.0%
TTGGCATATGACTGCATATC+GGG + chr5.2:58522393-58522412 None:intergenic 40.0%
TTGGTACAAGTCCATTCTCT+TGG + chr5.2:58522412-58522431 None:intergenic 40.0%
! GCACACTTTTGAATGTCATG+AGG + chr5.2:58522464-58522483 None:intergenic 40.0%
! TTTTTGCATCCCAAAAAGGG+GGG + chr5.2:58521982-58522001 None:intergenic 40.0%
!! CCTTTCCTTCTCTTTTGGAA+GGG - chr5.2:58522763-58522782 MS.gene44835:intron 40.0%
!! CTCAAGAAGCTTTGTTGACA+AGG - chr5.2:58522843-58522862 MS.gene44835:intron 40.0%
AAAGAGAAGGAAAGGGTCCA+TGG + chr5.2:58522758-58522777 None:intergenic 45.0%
AAGGGCTAAGGCTAATTCTG+AGG - chr5.2:58522862-58522881 MS.gene44835:intron 45.0%
AAGTCAAGGGTAAGAAGCCA+TGG - chr5.2:58522738-58522757 MS.gene44835:intron 45.0%
AAGTGCCCTTCCAAAAGAGA+AGG + chr5.2:58522771-58522790 None:intergenic 45.0%
AGCAGCAAGAATACCTTTGC+CGG + chr5.2:58521378-58521397 None:intergenic 45.0%
AGGATCTCAGGCTCAACAAT+TGG + chr5.2:58522431-58522450 None:intergenic 45.0%
ATGGCTTCTTACCCTTGACT+TGG + chr5.2:58522739-58522758 None:intergenic 45.0%
ATTGCCAATGCTGCCTACAT+CGG - chr5.2:58521347-58521366 MS.gene44835:CDS 45.0%
CAAAGAGGATGACTCCACTA+AGG + chr5.2:58521517-58521536 None:intergenic 45.0%
CAATGCCATCAACCAAGTCA+AGG - chr5.2:58522724-58522743 MS.gene44835:intron 45.0%
CACTCTCTTGAAGCCTAACA+TGG - chr5.2:58522553-58522572 MS.gene44835:intron 45.0%
CCAAACCATAGGCATTCTCA+TGG + chr5.2:58522370-58522389 None:intergenic 45.0%
CCAGACAAGAAAACAACAGC+TGG + chr5.2:58522671-58522690 None:intergenic 45.0%
CCATGAGAATGCCTATGGTT+TGG - chr5.2:58522367-58522386 MS.gene44835:CDS 45.0%
CCCTTCCAAAAGAGAAGGAA+AGG + chr5.2:58522766-58522785 None:intergenic 45.0%
CCCTTGTCAACCTTAATACC+AGG + chr5.2:58522191-58522210 None:intergenic 45.0%
CTCAGAGAGTCTTCATGTGA+AGG - chr5.2:58522931-58522950 MS.gene44835:CDS 45.0%
CTTCACATGAAGACTCTCTG+AGG + chr5.2:58522933-58522952 None:intergenic 45.0%
GATGAGTCAACCGGAACAAT+TGG - chr5.2:58521398-58521417 MS.gene44835:CDS 45.0%
GCAGTCATATGCCAAGAGAA+TGG - chr5.2:58522398-58522417 MS.gene44835:CDS 45.0%
GGCTACTCTTGGAACTTACA+AGG - chr5.2:58522883-58522902 MS.gene44835:intron 45.0%
GTTGATGTCTTGAACGAAGC+TGG - chr5.2:58522158-58522177 MS.gene44835:intron 45.0%
TAGGAAGTAAGTACCTGCAG+CGG + chr5.2:58521561-58521580 None:intergenic 45.0%
TAGTGGAGTCATCCTCTTTG+AGG - chr5.2:58521517-58521536 MS.gene44835:CDS 45.0%
TGGCGTGCAGTGCTTAAAAT+CGG - chr5.2:58522317-58522336 MS.gene44835:CDS 45.0%
TGGTGTGCTTCCTGGTATTA+AGG - chr5.2:58522178-58522197 MS.gene44835:intron 45.0%
TGTCATGAGGTCCATCAACA+AGG + chr5.2:58522451-58522470 None:intergenic 45.0%
! ACTTCAACAGAGTACCCTCA+AGG - chr5.2:58522787-58522806 MS.gene44835:intron 45.0%
! CAGGTGCACGTTTTGCTAAA+TGG - chr5.2:58522297-58522316 MS.gene44835:intron 45.0%
! CCCTTTCCTTCTCTTTTGGA+AGG - chr5.2:58522762-58522781 MS.gene44835:intron 45.0%
! TCATGGATAGAGTGCTCAGA+TGG + chr5.2:58522353-58522372 None:intergenic 45.0%
! TGCATTTCTCCCCCCTTTTT+GGG - chr5.2:58521970-58521989 MS.gene44835:intron 45.0%
! TGGACCCTTTCCTTCTCTTT+TGG - chr5.2:58522758-58522777 MS.gene44835:intron 45.0%
! TTGCATTTCTCCCCCCTTTT+TGG - chr5.2:58521969-58521988 MS.gene44835:intron 45.0%
! TTTTCCAGACCATGCCTTGA+GGG + chr5.2:58522804-58522823 None:intergenic 45.0%
!! AGCTTTGTTGACAAGGGCTA+AGG - chr5.2:58522850-58522869 MS.gene44835:intron 45.0%
!! CTTACCCTTGACTTGGTTGA+TGG + chr5.2:58522732-58522751 None:intergenic 45.0%
!! GCTAATTCTGAGGCTACTCT+TGG - chr5.2:58522872-58522891 MS.gene44835:intron 45.0%
!! GGTAACTCTAAACTTGGTGC+TGG - chr5.2:58522905-58522924 MS.gene44835:CDS 45.0%
!! TAAGGTACTGAAGGACACCA+GGG + chr5.2:58521499-58521518 None:intergenic 45.0%
!! TGACTCCACTAAGGTACTGA+AGG + chr5.2:58521508-58521527 None:intergenic 45.0%
!! TGACTTGGTTGATGGCATTG+AGG + chr5.2:58522724-58522743 None:intergenic 45.0%
!!! CCAGCTGTTGTTTTCTTGTC+TGG - chr5.2:58522668-58522687 MS.gene44835:intron 45.0%
!!! GCTGTTGTTTTCTTGTCTGG+TGG - chr5.2:58522671-58522690 MS.gene44835:intron 45.0%
AAGCCTAACATGGTTACCCC+TGG - chr5.2:58522563-58522582 MS.gene44835:intron 50.0%
AAGTCCATCAAGACCCTGAG+TGG + chr5.2:58522249-58522268 None:intergenic 50.0%
AGTGCTCAGATGGCTCATTG+GGG + chr5.2:58522343-58522362 None:intergenic 50.0%
AGTGTGCTCAGCAACAACCT+CGG + chr5.2:58522612-58522631 None:intergenic 50.0%
ATCAGTTCCGGCAAGCTCAA+CGG + chr5.2:58522216-58522235 None:intergenic 50.0%
CTTGCTGCTGATGAGTCAAC+CGG - chr5.2:58521389-58521408 MS.gene44835:CDS 50.0%
GAGCCTGAGATCCTTGTTGA+TGG - chr5.2:58522437-58522456 MS.gene44835:CDS 50.0%
GAGGACATGGTGGTCATTCA+AGG + chr5.2:58522525-58522544 None:intergenic 50.0%
GAGTGCTCAGATGGCTCATT+GGG + chr5.2:58522344-58522363 None:intergenic 50.0%
GATCCAGGGGTAACCATGTT+AGG + chr5.2:58522569-58522588 None:intergenic 50.0%
GATGGAGAAACCACCACTCA+GGG - chr5.2:58522233-58522252 MS.gene44835:intron 50.0%
GCAGCAAGAATACCTTTGCC+GGG + chr5.2:58521377-58521396 None:intergenic 50.0%
GGTAGAGGGTTTCCTCAAAG+AGG + chr5.2:58521532-58521551 None:intergenic 50.0%
GGTCCATCAACAAGGATCTC+AGG + chr5.2:58522443-58522462 None:intergenic 50.0%
GGTGGTTTCTCCATCAGTTC+CGG + chr5.2:58522228-58522247 None:intergenic 50.0%
GGTGTCCTTCAGTACCTTAG+TGG - chr5.2:58521500-58521519 MS.gene44835:CDS 50.0%
TGATGGAGAAACCACCACTC+AGG - chr5.2:58522232-58522251 MS.gene44835:intron 50.0%
TGCATATCGGGCCAAACCAT+AGG + chr5.2:58522381-58522400 None:intergenic 50.0%
TGTCCTTGCAGCATGCTACA+AGG - chr5.2:58522499-58522518 MS.gene44835:CDS 50.0%
! AACAGAGTACCCTCAAGGCA+TGG - chr5.2:58522792-58522811 MS.gene44835:intron 50.0%
! ACCTTTGGTGCATCAGATCC+AGG + chr5.2:58522584-58522603 None:intergenic 50.0%
! AGAGTGCTCAGATGGCTCAT+TGG + chr5.2:58522345-58522364 None:intergenic 50.0%
! CCTTTGGTGCATCAGATCCA+GGG + chr5.2:58522583-58522602 None:intergenic 50.0%
! CTTTGGTGCATCAGATCCAG+GGG + chr5.2:58522582-58522601 None:intergenic 50.0%
! CTTTTCCAGACCATGCCTTG+AGG + chr5.2:58522805-58522824 None:intergenic 50.0%
! GATGGCATTGAGGTTGACAC+TGG + chr5.2:58522714-58522733 None:intergenic 50.0%
!! AAGGTACTGAAGGACACCAG+GGG + chr5.2:58521498-58521517 None:intergenic 50.0%
!! ACTCAGGGTCTTGATGGACT+TGG - chr5.2:58522248-58522267 MS.gene44835:intron 50.0%
!! CTAAGGTACTGAAGGACACC+AGG + chr5.2:58521500-58521519 None:intergenic 50.0%
!! GCTTCAAGAGAGTGCCTTCA+AGG + chr5.2:58522547-58522566 None:intergenic 50.0%
!! TCAAGAGAGTGCCTTCAAGG+AGG + chr5.2:58522544-58522563 None:intergenic 50.0%
AACGAAGCTGGTGTGCTTCC+TGG - chr5.2:58522170-58522189 MS.gene44835:intron 55.0%
AAGTACCTGCAGCGGTGCTT+TGG + chr5.2:58521553-58521572 None:intergenic 55.0%
ACAACCTCGGGTGCAACCTT+TGG + chr5.2:58522599-58522618 None:intergenic 55.0%
ACCACCACTCAGGGTCTTGA+TGG - chr5.2:58522242-58522261 MS.gene44835:intron 55.0%
AGTACCCTCAAGGCATGGTC+TGG - chr5.2:58522797-58522816 MS.gene44835:intron 55.0%
CCCTGGATCTGATGCACCAA+AGG - chr5.2:58522580-58522599 MS.gene44835:intron 55.0%
GACCACCATGTCCTCCTTGA+AGG - chr5.2:58522530-58522549 MS.gene44835:intron 55.0%
GAGTGCCTTCAAGGAGGACA+TGG + chr5.2:58522538-58522557 None:intergenic 55.0%
GGGCGGTGAAAAGGAGTTCA+CGG + chr5.2:58521478-58521497 None:intergenic 55.0%
GTGTGCTCAGCAACAACCTC+GGG + chr5.2:58522611-58522630 None:intergenic 55.0%
GTTGAGCTTGCCGGAACTGA+TGG - chr5.2:58522215-58522234 MS.gene44835:intron 55.0%
TCCATCAAGACCCTGAGTGG+TGG + chr5.2:58522246-58522265 None:intergenic 55.0%
TGCAGCGGTGCTTTGGTAGA+GGG + chr5.2:58521546-58521565 None:intergenic 55.0%
TGCCTTCAAGGAGGACATGG+TGG + chr5.2:58522535-58522554 None:intergenic 55.0%
! AGGCCTTGTAGCATGCTGCA+AGG + chr5.2:58522505-58522524 None:intergenic 55.0%
! CTTGTCTGGTGGACAGAGTG+AGG - chr5.2:58522682-58522701 MS.gene44835:intron 55.0%
! TGGTGGACAGAGTGAGGAAG+AGG - chr5.2:58522688-58522707 MS.gene44835:intron 55.0%
! TGTGCCGATGTAGGCAGCAT+TGG + chr5.2:58521354-58521373 None:intergenic 55.0%
! TTCACGGAGAGCACGTCTGT+TGG + chr5.2:58521462-58521481 None:intergenic 55.0%
!! AAGGGTACCGTTGAGCTTGC+CGG - chr5.2:58522206-58522225 MS.gene44835:intron 55.0%
ACAACAGCTGGGACTGCAGC+AGG + chr5.2:58522659-58522678 None:intergenic 60.0%
AGCTGGGACTGCAGCAGGTA+CGG + chr5.2:58522654-58522673 None:intergenic 60.0%
CTGCAGCGGTGCTTTGGTAG+AGG + chr5.2:58521547-58521566 None:intergenic 60.0%
GCATGCTGCAAGGACACGCT+CGG + chr5.2:58522495-58522514 None:intergenic 60.0%
GTACTGAAGGACACCAGGGG+CGG + chr5.2:58521495-58521514 None:intergenic 60.0%
TACATCGGCACACCCGGCAA+AGG - chr5.2:58521362-58521381 MS.gene44835:CDS 60.0%
TGCACCAAAGGTTGCACCCG+AGG - chr5.2:58522592-58522611 MS.gene44835:intron 60.0%
! GAACTCCTTTTCACCGCCCC+TGG - chr5.2:58521479-58521498 MS.gene44835:CDS 60.0%
! TTTGCCGGGTGTGCCGATGT+AGG + chr5.2:58521363-58521382 None:intergenic 60.0%
!! CTCTACCAAAGCACCGCTGC+AGG - chr5.2:58521545-58521564 MS.gene44835:CDS 60.0%
GCTGCCTACATCGGCACACC+CGG - chr5.2:58521356-58521375 MS.gene44835:CDS 65.0%
GGACACCAGGGGCGGTGAAA+AGG + chr5.2:58521487-58521506 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 58520910 58522967 58520910 ID=MS.gene44835
chr5.2 mRNA 58520910 58522967 58520910 ID=MS.gene44835.t1;Parent=MS.gene44835
chr5.2 exon 58522901 58522967 58522901 ID=MS.gene44835.t1.exon1;Parent=MS.gene44835.t1
chr5.2 CDS 58522901 58522967 58522901 ID=cds.MS.gene44835.t1;Parent=MS.gene44835.t1
chr5.2 exon 58522311 58522538 58522311 ID=MS.gene44835.t1.exon2;Parent=MS.gene44835.t1
chr5.2 CDS 58522311 58522538 58522311 ID=cds.MS.gene44835.t1;Parent=MS.gene44835.t1
chr5.2 exon 58520910 58521730 58520910 ID=MS.gene44835.t1.exon3;Parent=MS.gene44835.t1
chr5.2 CDS 58520910 58521730 58520910 ID=cds.MS.gene44835.t1;Parent=MS.gene44835.t1
Gene Sequence

>MS.gene44835

ATGTCGGATCTTGCTCAATATTTTGTTGTTTTTTTTATTCTTTGTTCTGTTTTATTTGTATGGATCGGTAATTGTTGGTTTTAGTTTAGAGTTTGTTAATTTCAGATCTAACTTTTTTATGATTTTAATTTATTTATTGAAAATTAGTTCTTAATTATTCATTACATCAGATCCTTAAAGGGTTTTGATATAAATCACAGTTTTAATATTTATGAAATTGTAAATCAGGGAAAATAAAATCAAGTAGATCTATTTAAGGTATACGTTATTTACTTTATAAATCTGAGATCACTGTTGATGATCTATGTTGTTCATAATTTGATTTTGTTTATGTCTAATCATGATTAATTTTGGGTATTTATTTGTTAATTAGATTGTTGCAGTAAGGTTTATAGTTGTGTTGGTACTGATTTTTGTGAGAATTTGCAGATGAGCTTATTGCCAATGCTGCCTACATCGGCACACCCGGCAAAGGTATTCTTGCTGCTGATGAGTCAACCGGAACAATTGGAAAGCGTCTAGCTAGCATCAGCGTTGAGAATGTTGAATCCAACAGACGTGCTCTCCGTGAACTCCTTTTCACCGCCCCTGGTGTCCTTCAGTACCTTAGTGGAGTCATCCTCTTTGAGGAAACCCTCTACCAAAGCACCGCTGCAGGTACTTACTTCCTAGTTCCTACAATCTGAACAATATTTACTGAACTTATTTTTTATCTGATACGTTTTCTCCTTGAATTGTTCATCAATACATCTTTTGTTATCATGTTAGTGTCTTCGTAAATAGATTGTTATCATGTCTATTGCTTTGTATTGTAAAAGTTTGGATCGTGGTATATCATCAGTTACTTTCAACATGCTTTTTTATATCTCAATGACTGAACATGAATACTTATCATATCTATTGCTTTGTGAAGTTTGGTATATGATTGATCACGTGTTGCCTTTAACACGTTTTCTTATATGTCAATTGCTTTGAAGAGTCTTTATTATGATAAGAAATAGTGATCCATCATGTTAGGAAGCAATAGACATAATACGTAACAAGTTGTTGTTCGCATGCTTGCATTTCTCCCCCCTTTTTGGGATGCAAAAAATGTTTATATCTATGTTTGAATGAGTTGTGTATGTGTTTTTCCTGCTTAGAAGCTGTTCTTGATTGCTTCTTTTTGTGGTGTGTGAATTATGATTGATGACATTGTTGTTGTTTTTGTACACTTACATGAATGTATTTTTTTTAGGCAAGCCTTTTGTTGATGTCTTGAACGAAGCTGGTGTGCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAGCTTGCCGGAACTGATGGAGAAACCACCACTCAGGGTCTTGATGGACTTGGTGCTCGTTGTGCTAAGTACTATGAAGCAGGTGCACGTTTTGCTAAATGGCGTGCAGTGCTTAAAATCGGCCCCAATGAGCCATCTGAGCACTCTATCCATGAGAATGCCTATGGTTTGGCCCGATATGCAGTCATATGCCAAGAGAATGGACTTGTACCAATTGTTGAGCCTGAGATCCTTGTTGATGGACCTCATGACATTCAAAAGTGTGCTGCTGTTACCGAGCGTGTCCTTGCAGCATGCTACAAGGCCTTGAATGACCACCATGTCCTCCTTGAAGGCACTCTCTTGAAGCCTAACATGGTTACCCCTGGATCTGATGCACCAAAGGTTGCACCCGAGGTTGTTGCTGAGCACACTGTTAGAGCTTTGCAGAGAACCGTACCTGCTGCAGTCCCAGCTGTTGTTTTCTTGTCTGGTGGACAGAGTGAGGAAGAGGCCAGTGTCAACCTCAATGCCATCAACCAAGTCAAGGGTAAGAAGCCATGGACCCTTTCCTTCTCTTTTGGAAGGGCACTTCAACAGAGTACCCTCAAGGCATGGTCTGGAAAAGAAGAAAATGTGAAGGCTGCTCAAGAAGCTTTGTTGACAAGGGCTAAGGCTAATTCTGAGGCTACTCTTGGAACTTACAAGGGTAACTCTAAACTTGGTGCTGGTGCCTCAGAGAGTCTTCATGTGAAGGACTACAAGTATTGA
Protein sequence

>MS.gene44835.t1

MSDLAQYFVVFFILCSVLFVWIDELIANAAYIGTPGKGILAADESTGTIGKRLASISVENVESNRRALRELLFTAPGVLQYLSGVILFEETLYQSTAAGKPFVDVLNEAGVLPGIKVDKGTVELAGTDGETTTQGLDGLGARCAKYYEAGARFAKWRAVLKIGPNEPSEHSIHENAYGLARYAVICQENGLVPIVEPEILVDGPHDIQKCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDAPKVAPEVVAEHTVRALQRTVPAAVPAVVFLSGGQSEEEASVNLNAINQVKGKKPWTLSFSFGRALQQSTLKAWSGKEENVKAAQEALLTRAKANSEATLGTYKGNSKLGAGASESLHVKDYKY