Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44912.t1 | XP_003608469.2 | 95.5 | 424 | 9 | 1 | 1 | 424 | 1 | 414 | 2.50E-222 | 781.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44912.t1 | Q66GP0 | 65.6 | 427 | 128 | 6 | 1 | 424 | 13 | 423 | 4.1e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44912.t1 | G7JCU1 | 95.5 | 424 | 9 | 1 | 1 | 424 | 1 | 414 | 1.8e-222 | 781.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051789 | MS.gene44912 | 0.817414 | 3.34E-52 | -1.69E-46 |
| MS.gene053074 | MS.gene44912 | 0.823866 | 1.10E-53 | -1.69E-46 |
| MS.gene059006 | MS.gene44912 | 0.821893 | 3.17E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44912.t1 | MTR_4g095430 | 94.186 | 430 | 15 | 1 | 1 | 430 | 1 | 420 | 0.0 | 830 |
| MS.gene44912.t1 | MTR_5g016060 | 73.488 | 430 | 97 | 5 | 1 | 426 | 28 | 444 | 0.0 | 646 |
| MS.gene44912.t1 | MTR_5g016060 | 73.314 | 341 | 76 | 4 | 90 | 426 | 1 | 330 | 8.32e-177 | 504 |
| MS.gene44912.t1 | MTR_4g022330 | 42.725 | 433 | 226 | 7 | 2 | 426 | 24 | 442 | 7.72e-116 | 352 |
| MS.gene44912.t1 | MTR_1g105870 | 80.995 | 221 | 19 | 2 | 20 | 240 | 38 | 235 | 3.35e-109 | 323 |
| MS.gene44912.t1 | MTR_3g062540 | 41.026 | 429 | 221 | 5 | 1 | 426 | 12 | 411 | 1.58e-107 | 329 |
| MS.gene44912.t1 | MTR_1g088885 | 41.964 | 448 | 211 | 10 | 1 | 426 | 25 | 445 | 2.09e-107 | 330 |
| MS.gene44912.t1 | MTR_7g108290 | 41.648 | 449 | 215 | 9 | 1 | 426 | 25 | 449 | 2.20e-107 | 332 |
| MS.gene44912.t1 | MTR_5g075640 | 39.817 | 437 | 232 | 6 | 1 | 431 | 13 | 424 | 1.82e-104 | 322 |
| MS.gene44912.t1 | MTR_4g093850 | 38.745 | 462 | 242 | 7 | 2 | 425 | 33 | 491 | 1.06e-102 | 315 |
| MS.gene44912.t1 | MTR_4g093850 | 38.445 | 463 | 244 | 7 | 2 | 426 | 33 | 492 | 1.08e-100 | 314 |
| MS.gene44912.t1 | MTR_7g073980 | 41.549 | 426 | 221 | 9 | 12 | 426 | 32 | 440 | 1.14e-100 | 313 |
| MS.gene44912.t1 | MTR_2g009340 | 37.238 | 478 | 238 | 8 | 1 | 426 | 32 | 499 | 2.06e-98 | 309 |
| MS.gene44912.t1 | MTR_3g062540 | 40.050 | 397 | 206 | 5 | 33 | 426 | 2 | 369 | 6.42e-91 | 285 |
| MS.gene44912.t1 | MTR_2g048390 | 34.444 | 450 | 258 | 9 | 2 | 425 | 15 | 453 | 2.66e-87 | 273 |
| MS.gene44912.t1 | MTR_5g075640 | 37.531 | 405 | 222 | 6 | 33 | 431 | 2 | 381 | 3.82e-86 | 273 |
| MS.gene44912.t1 | MTR_8g090220 | 35.440 | 443 | 225 | 8 | 13 | 426 | 52 | 462 | 2.62e-84 | 268 |
| MS.gene44912.t1 | MTR_8g090220 | 35.440 | 443 | 225 | 8 | 13 | 426 | 52 | 462 | 1.71e-83 | 269 |
| MS.gene44912.t1 | MTR_8g078900 | 35.853 | 463 | 241 | 11 | 7 | 425 | 14 | 464 | 4.73e-83 | 263 |
| MS.gene44912.t1 | MTR_2g018750 | 34.382 | 445 | 256 | 11 | 7 | 428 | 20 | 451 | 4.90e-81 | 261 |
| MS.gene44912.t1 | MTR_8g078900 | 35.244 | 471 | 243 | 12 | 7 | 430 | 14 | 469 | 3.55e-80 | 261 |
| MS.gene44912.t1 | MTR_1g094850 | 33.787 | 441 | 260 | 9 | 7 | 428 | 20 | 447 | 4.52e-76 | 249 |
| MS.gene44912.t1 | MTR_8g078900 | 35.762 | 453 | 229 | 12 | 25 | 430 | 2 | 439 | 1.52e-75 | 248 |
| MS.gene44912.t1 | MTR_2g084595 | 33.257 | 439 | 266 | 7 | 6 | 425 | 16 | 446 | 2.59e-75 | 242 |
| MS.gene44912.t1 | MTR_1g014070 | 35.963 | 431 | 243 | 11 | 10 | 424 | 24 | 437 | 1.17e-74 | 245 |
| MS.gene44912.t1 | MTR_5g015790 | 34.346 | 428 | 249 | 7 | 10 | 424 | 24 | 432 | 1.42e-74 | 245 |
| MS.gene44912.t1 | MTR_2g084595 | 32.805 | 442 | 270 | 7 | 6 | 428 | 16 | 449 | 9.14e-73 | 240 |
| MS.gene44912.t1 | MTR_8g078900 | 35.780 | 436 | 224 | 11 | 34 | 425 | 1 | 424 | 2.47e-72 | 234 |
| MS.gene44912.t1 | MTR_1g106430 | 34.419 | 430 | 250 | 8 | 10 | 424 | 25 | 437 | 6.08e-72 | 238 |
| MS.gene44912.t1 | MTR_5g032780 | 34.335 | 466 | 239 | 10 | 10 | 426 | 23 | 470 | 7.43e-72 | 238 |
| MS.gene44912.t1 | MTR_1g064360 | 31.651 | 436 | 257 | 8 | 7 | 426 | 20 | 430 | 5.50e-70 | 231 |
| MS.gene44912.t1 | MTR_8g078900 | 35.135 | 444 | 226 | 12 | 34 | 430 | 1 | 429 | 7.81e-70 | 232 |
| MS.gene44912.t1 | MTR_4g134210 | 34.752 | 423 | 251 | 9 | 10 | 426 | 23 | 426 | 3.43e-69 | 230 |
| MS.gene44912.t1 | MTR_1g082690 | 29.302 | 430 | 259 | 7 | 2 | 428 | 47 | 434 | 1.12e-61 | 209 |
| MS.gene44912.t1 | MTR_2g027410 | 32.775 | 418 | 252 | 9 | 12 | 426 | 25 | 416 | 1.64e-61 | 209 |
| MS.gene44912.t1 | MTR_8g069330 | 31.696 | 448 | 228 | 10 | 16 | 426 | 29 | 435 | 7.66e-59 | 202 |
| MS.gene44912.t1 | MTR_2g027410 | 31.793 | 368 | 224 | 8 | 62 | 426 | 1 | 344 | 5.40e-48 | 171 |
| MS.gene44912.t1 | MTR_4g045767 | 27.644 | 416 | 254 | 13 | 22 | 426 | 14 | 393 | 6.59e-31 | 125 |
| MS.gene44912.t1 | MTR_4g011530 | 34.167 | 240 | 129 | 5 | 195 | 426 | 46 | 264 | 1.50e-30 | 122 |
| MS.gene44912.t1 | MTR_4g074190 | 24.609 | 447 | 268 | 12 | 16 | 427 | 6 | 418 | 8.13e-30 | 120 |
| MS.gene44912.t1 | MTR_2g102730 | 33.333 | 249 | 145 | 6 | 184 | 426 | 11 | 244 | 4.00e-29 | 118 |
| MS.gene44912.t1 | MTR_4g074190 | 24.390 | 451 | 270 | 13 | 16 | 431 | 6 | 420 | 6.42e-28 | 116 |
| MS.gene44912.t1 | MTR_4g074190 | 24.060 | 399 | 252 | 8 | 57 | 431 | 3 | 374 | 8.04e-27 | 112 |
| MS.gene44912.t1 | MTR_1g035720 | 26.058 | 449 | 246 | 16 | 16 | 424 | 6 | 408 | 2.16e-23 | 102 |
| MS.gene44912.t1 | MTR_2g010890 | 27.147 | 361 | 208 | 12 | 82 | 426 | 2 | 323 | 1.51e-19 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44912.t1 | AT5G67385 | 66.667 | 429 | 124 | 6 | 1 | 426 | 13 | 425 | 0.0 | 560 |
| MS.gene44912.t1 | AT5G67385 | 65.909 | 396 | 116 | 6 | 34 | 426 | 1 | 380 | 3.82e-176 | 504 |
| MS.gene44912.t1 | AT5G67385 | 65.909 | 396 | 116 | 6 | 34 | 426 | 1 | 380 | 3.82e-176 | 504 |
| MS.gene44912.t1 | AT5G67385 | 65.909 | 396 | 116 | 6 | 34 | 426 | 1 | 380 | 3.82e-176 | 504 |
| MS.gene44912.t1 | AT5G67385 | 65.909 | 396 | 116 | 6 | 34 | 426 | 1 | 380 | 3.82e-176 | 504 |
| MS.gene44912.t1 | AT3G49970 | 55.309 | 405 | 128 | 10 | 25 | 426 | 6 | 360 | 8.79e-144 | 420 |
| MS.gene44912.t1 | AT3G49970 | 55.309 | 405 | 128 | 10 | 25 | 426 | 6 | 360 | 8.79e-144 | 420 |
| MS.gene44912.t1 | AT5G48800 | 44.056 | 429 | 206 | 6 | 5 | 426 | 34 | 435 | 9.72e-120 | 362 |
| MS.gene44912.t1 | AT2G30520 | 40.783 | 434 | 218 | 6 | 1 | 426 | 18 | 420 | 4.85e-111 | 339 |
| MS.gene44912.t1 | AT2G47860 | 42.793 | 444 | 210 | 10 | 1 | 425 | 26 | 444 | 3.29e-108 | 327 |
| MS.gene44912.t1 | AT2G47860 | 42.697 | 445 | 211 | 10 | 1 | 426 | 26 | 445 | 1.63e-105 | 326 |
| MS.gene44912.t1 | AT1G03010 | 41.778 | 450 | 218 | 10 | 1 | 426 | 25 | 454 | 4.88e-103 | 320 |
| MS.gene44912.t1 | AT2G47860 | 40.685 | 467 | 210 | 11 | 1 | 425 | 26 | 467 | 7.82e-103 | 314 |
| MS.gene44912.t1 | AT1G03010 | 41.573 | 445 | 217 | 10 | 6 | 426 | 2 | 427 | 9.73e-102 | 315 |
| MS.gene44912.t1 | AT1G03010 | 41.913 | 439 | 212 | 9 | 12 | 426 | 34 | 453 | 2.78e-101 | 315 |
| MS.gene44912.t1 | AT2G47860 | 40.598 | 468 | 211 | 11 | 1 | 426 | 26 | 468 | 2.38e-100 | 313 |
| MS.gene44912.t1 | AT3G08570 | 38.799 | 433 | 219 | 10 | 12 | 424 | 33 | 439 | 4.87e-95 | 298 |
| MS.gene44912.t1 | AT2G30520 | 39.801 | 402 | 203 | 6 | 33 | 426 | 2 | 372 | 9.89e-95 | 295 |
| MS.gene44912.t1 | AT2G30520 | 39.801 | 402 | 203 | 6 | 33 | 426 | 2 | 372 | 9.89e-95 | 295 |
| MS.gene44912.t1 | AT1G30440 | 35.874 | 446 | 260 | 7 | 2 | 424 | 15 | 457 | 2.00e-86 | 277 |
| MS.gene44912.t1 | AT3G08660 | 35.225 | 423 | 228 | 7 | 12 | 426 | 33 | 417 | 4.90e-81 | 256 |
| MS.gene44912.t1 | AT5G03250 | 34.899 | 447 | 255 | 10 | 7 | 428 | 20 | 455 | 1.44e-80 | 260 |
| MS.gene44912.t1 | AT3G08660 | 35.461 | 423 | 227 | 8 | 12 | 426 | 33 | 417 | 1.11e-78 | 254 |
| MS.gene44912.t1 | AT5G13600 | 34.157 | 445 | 248 | 10 | 7 | 426 | 20 | 444 | 1.78e-75 | 246 |
| MS.gene44912.t1 | AT5G66560 | 33.196 | 485 | 241 | 11 | 7 | 425 | 13 | 480 | 3.49e-75 | 243 |
| MS.gene44912.t1 | AT5G66560 | 32.653 | 490 | 247 | 11 | 7 | 430 | 13 | 485 | 9.27e-73 | 241 |
| MS.gene44912.t1 | AT3G08660 | 35.443 | 395 | 209 | 8 | 40 | 426 | 1 | 357 | 1.89e-69 | 229 |
| MS.gene44912.t1 | AT5G67440 | 34.038 | 426 | 246 | 10 | 10 | 424 | 24 | 425 | 2.12e-69 | 230 |
| MS.gene44912.t1 | AT5G67440 | 34.038 | 426 | 246 | 10 | 10 | 424 | 24 | 425 | 2.12e-69 | 230 |
| MS.gene44912.t1 | AT5G66560 | 32.839 | 472 | 234 | 11 | 25 | 430 | 2 | 456 | 4.54e-68 | 228 |
| MS.gene44912.t1 | AT1G67900 | 35.541 | 453 | 249 | 8 | 10 | 430 | 23 | 464 | 7.70e-67 | 224 |
| MS.gene44912.t1 | AT1G67900 | 35.541 | 453 | 249 | 8 | 10 | 430 | 23 | 464 | 7.70e-67 | 224 |
| MS.gene44912.t1 | AT1G67900 | 35.541 | 453 | 249 | 8 | 10 | 430 | 23 | 464 | 7.70e-67 | 224 |
| MS.gene44912.t1 | AT1G67900 | 35.541 | 453 | 249 | 8 | 10 | 430 | 23 | 464 | 7.70e-67 | 224 |
| MS.gene44912.t1 | AT1G67900 | 35.541 | 453 | 249 | 8 | 10 | 430 | 23 | 464 | 7.70e-67 | 224 |
| MS.gene44912.t1 | AT1G67900 | 35.541 | 453 | 249 | 8 | 10 | 430 | 23 | 464 | 7.70e-67 | 224 |
| MS.gene44912.t1 | AT2G14820 | 34.562 | 434 | 243 | 12 | 11 | 424 | 25 | 437 | 3.36e-66 | 223 |
| MS.gene44912.t1 | AT2G14820 | 34.562 | 434 | 243 | 12 | 11 | 424 | 25 | 437 | 3.36e-66 | 223 |
| MS.gene44912.t1 | AT5G66560 | 35.000 | 400 | 219 | 9 | 55 | 430 | 64 | 446 | 9.33e-66 | 222 |
| MS.gene44912.t1 | AT5G10250 | 32.444 | 450 | 244 | 11 | 2 | 426 | 39 | 453 | 1.69e-64 | 218 |
| MS.gene44912.t1 | AT2G47860 | 39.306 | 346 | 172 | 8 | 100 | 426 | 1 | 327 | 1.87e-64 | 216 |
| MS.gene44912.t1 | AT2G47860 | 39.306 | 346 | 172 | 8 | 100 | 426 | 1 | 327 | 1.87e-64 | 216 |
| MS.gene44912.t1 | AT5G67440 | 34.069 | 408 | 234 | 10 | 28 | 424 | 5 | 388 | 1.10e-63 | 214 |
| MS.gene44912.t1 | AT4G31820 | 32.311 | 424 | 244 | 10 | 12 | 424 | 26 | 417 | 1.39e-63 | 215 |
| MS.gene44912.t1 | AT3G50840 | 31.935 | 429 | 269 | 6 | 2 | 428 | 5 | 412 | 5.04e-63 | 213 |
| MS.gene44912.t1 | AT5G10250 | 32.648 | 438 | 244 | 11 | 2 | 426 | 39 | 438 | 1.27e-62 | 213 |
| MS.gene44912.t1 | AT3G26490 | 30.388 | 464 | 260 | 11 | 10 | 432 | 23 | 464 | 3.08e-60 | 204 |
| MS.gene44912.t1 | AT3G44820 | 28.942 | 463 | 273 | 9 | 2 | 424 | 12 | 458 | 3.17e-59 | 205 |
| MS.gene44912.t1 | AT3G26490 | 30.568 | 458 | 255 | 11 | 10 | 426 | 23 | 458 | 3.59e-59 | 203 |
| MS.gene44912.t1 | AT3G26490 | 30.568 | 458 | 255 | 11 | 10 | 426 | 23 | 458 | 3.59e-59 | 203 |
| MS.gene44912.t1 | AT3G26490 | 30.568 | 458 | 255 | 11 | 10 | 426 | 23 | 458 | 3.59e-59 | 203 |
| MS.gene44912.t1 | AT4G37590 | 32.558 | 430 | 236 | 10 | 10 | 424 | 24 | 414 | 4.41e-59 | 203 |
| MS.gene44912.t1 | AT5G47800 | 29.314 | 423 | 271 | 9 | 12 | 426 | 25 | 427 | 6.83e-56 | 194 |
| MS.gene44912.t1 | AT5G47800 | 29.314 | 423 | 271 | 9 | 12 | 426 | 25 | 427 | 6.83e-56 | 194 |
| MS.gene44912.t1 | AT5G47800 | 29.314 | 423 | 271 | 9 | 12 | 426 | 25 | 427 | 6.83e-56 | 194 |
| MS.gene44912.t1 | AT5G47800 | 29.314 | 423 | 271 | 9 | 12 | 426 | 138 | 540 | 2.96e-55 | 194 |
| MS.gene44912.t1 | AT2G23050 | 30.072 | 419 | 246 | 8 | 10 | 424 | 24 | 399 | 5.11e-55 | 190 |
| MS.gene44912.t1 | AT5G64330 | 40.154 | 259 | 131 | 4 | 3 | 240 | 42 | 297 | 5.65e-54 | 191 |
| MS.gene44912.t1 | AT5G64330 | 36.757 | 185 | 93 | 3 | 266 | 426 | 372 | 556 | 6.91e-29 | 119 |
| MS.gene44912.t1 | AT5G64330 | 40.154 | 259 | 131 | 4 | 3 | 240 | 42 | 297 | 1.64e-53 | 191 |
| MS.gene44912.t1 | AT5G64330 | 36.757 | 185 | 93 | 3 | 266 | 426 | 372 | 556 | 5.58e-29 | 120 |
| MS.gene44912.t1 | AT3G50840 | 31.486 | 397 | 249 | 6 | 34 | 428 | 1 | 376 | 4.38e-52 | 183 |
| MS.gene44912.t1 | AT3G50840 | 31.486 | 397 | 249 | 6 | 34 | 428 | 1 | 376 | 4.38e-52 | 183 |
| MS.gene44912.t1 | AT4G31820 | 30.556 | 396 | 232 | 10 | 40 | 424 | 1 | 364 | 2.59e-50 | 178 |
| MS.gene44912.t1 | AT5G03250 | 31.356 | 354 | 207 | 8 | 100 | 428 | 1 | 343 | 2.42e-46 | 167 |
| MS.gene44912.t1 | AT5G64330 | 40.086 | 232 | 115 | 4 | 30 | 240 | 10 | 238 | 8.51e-45 | 164 |
| MS.gene44912.t1 | AT5G64330 | 36.757 | 185 | 93 | 3 | 266 | 426 | 313 | 497 | 5.87e-29 | 119 |
| MS.gene44912.t1 | AT5G48130 | 27.477 | 444 | 250 | 12 | 7 | 431 | 33 | 423 | 1.01e-42 | 159 |
| MS.gene44912.t1 | AT3G19850 | 26.761 | 426 | 244 | 11 | 33 | 424 | 23 | 414 | 5.65e-32 | 128 |
| MS.gene44912.t1 | AT3G22104 | 27.336 | 428 | 256 | 13 | 15 | 430 | 6 | 390 | 8.29e-31 | 124 |
| MS.gene44912.t1 | AT1G50280 | 27.982 | 436 | 263 | 12 | 15 | 424 | 5 | 415 | 1.41e-29 | 121 |
| MS.gene44912.t1 | AT2G23050 | 26.380 | 326 | 196 | 7 | 100 | 424 | 1 | 283 | 4.06e-28 | 114 |
| MS.gene44912.t1 | AT1G52770 | 33.333 | 237 | 143 | 5 | 195 | 426 | 28 | 254 | 7.25e-28 | 115 |
| MS.gene44912.t1 | AT1G50280 | 28.718 | 390 | 231 | 10 | 57 | 424 | 18 | 382 | 8.11e-28 | 115 |
| MS.gene44912.t1 | AT3G15570 | 31.169 | 231 | 142 | 4 | 204 | 426 | 38 | 259 | 5.24e-27 | 112 |
| MS.gene44912.t1 | AT5G17580 | 25.647 | 425 | 269 | 12 | 15 | 428 | 22 | 410 | 3.02e-25 | 108 |
| MS.gene44912.t1 | AT5G17580 | 25.647 | 425 | 269 | 12 | 15 | 428 | 7 | 395 | 3.61e-25 | 108 |
| MS.gene44912.t1 | AT3G03510 | 27.198 | 364 | 196 | 11 | 69 | 424 | 8 | 310 | 3.24e-23 | 102 |
| MS.gene44912.t1 | AT3G22104 | 25.706 | 354 | 211 | 9 | 87 | 430 | 4 | 315 | 7.60e-19 | 88.6 |
| MS.gene44912.t1 | AT3G22104 | 25.706 | 354 | 211 | 9 | 87 | 430 | 4 | 315 | 7.60e-19 | 88.6 |
| MS.gene44912.t1 | AT3G22104 | 25.706 | 354 | 211 | 9 | 87 | 430 | 4 | 315 | 7.60e-19 | 88.6 |
| MS.gene44912.t1 | AT3G49900 | 30.864 | 162 | 100 | 5 | 3 | 159 | 55 | 209 | 3.45e-13 | 71.6 |
| MS.gene44912.t1 | AT3G49900 | 30.864 | 162 | 100 | 5 | 3 | 159 | 55 | 209 | 3.55e-13 | 71.6 |
Find 0 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATAAGTTTATAAGTG+AGG | + | 32661:8384-8403 | None:intergenic | 15.0% |
| !! | TCACTTATAAACTTATATTT+AGG | - | 32661:8383-8402 | MS.gene44912:CDS | 15.0% |
| !!! | CTTTTTTTTTTTATCAAGAA+TGG | - | 32661:7202-7221 | MS.gene44912:CDS | 15.0% |
| !!! | TTATATTTTATCTAAACTAG+TGG | + | 32661:8449-8468 | None:intergenic | 15.0% |
| !! | GAAAAAGTTAATATTAGCAT+CGG | + | 32661:6902-6921 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAGATGGTATCA+GGG | + | 32661:8309-8328 | None:intergenic | 20.0% |
| !!! | AAATTTTCCTTCTTTAGTAA+AGG | + | 32661:7951-7970 | None:intergenic | 20.0% |
| !!! | AATTTTCCTTCTTTAGTAAA+GGG | + | 32661:7950-7969 | None:intergenic | 20.0% |
| !!! | TGCTAATATTAACTTTTTCT+TGG | - | 32661:6903-6922 | MS.gene44912:CDS | 20.0% |
| !!! | TGTGAATAAAGCATTATAAT+AGG | + | 32661:7902-7921 | None:intergenic | 20.0% |
| !!! | TTTCATATCAGTTTTGTTTT+AGG | - | 32661:7969-7988 | MS.gene44912:intron | 20.0% |
| !!! | TTTTTATCAAGAATGGTAAT+AGG | - | 32661:7209-7228 | MS.gene44912:CDS | 20.0% |
| ! | AAGATTTGATTAGATGTATG+TGG | + | 32661:8409-8428 | None:intergenic | 25.0% |
| ! | ACAAACTCAAATATCAAACT+TGG | - | 32661:7051-7070 | MS.gene44912:CDS | 25.0% |
| ! | TATAAGTTTATAAGTGAGGT+CGG | + | 32661:8380-8399 | None:intergenic | 25.0% |
| ! | TGAAAATACCTTTATAAGGT+AGG | + | 32661:8142-8161 | None:intergenic | 25.0% |
| ! | TGAAATGACAGAAGATTATT+CGG | - | 32661:7517-7536 | MS.gene44912:intron | 25.0% |
| ! | TGATAAGTAGTTCAATTCAA+AGG | + | 32661:6951-6970 | None:intergenic | 25.0% |
| ! | TTTCCATTAATTTCCAAAAG+TGG | - | 32661:7314-7333 | MS.gene44912:CDS | 25.0% |
| !! | ACCATCTTAAAATTTTGGAT+TGG | - | 32661:8313-8332 | MS.gene44912:CDS | 25.0% |
| !! | CCATCTTAAAATTTTGGATT+GGG | - | 32661:8314-8333 | MS.gene44912:CDS | 25.0% |
| !! | CTGATACCATCTTAAAATTT+TGG | - | 32661:8308-8327 | MS.gene44912:CDS | 25.0% |
| !!! | ATTGAACCTTGACTATTTTT+TGG | - | 32661:8535-8554 | MS.gene44912:CDS | 25.0% |
| !!! | CAAAATTTTAAGATGGTATC+AGG | + | 32661:8310-8329 | None:intergenic | 25.0% |
| !!! | TACCTTATAAAGGTATTTTC+AGG | - | 32661:8141-8160 | MS.gene44912:CDS | 25.0% |
| AAATCAAGAACAACAGAAGA+TGG | - | 32661:9034-9053 | MS.gene44912:intron | 30.0% | |
| ACATCGATGAGTTCAATTAA+TGG | + | 32661:7389-7408 | None:intergenic | 30.0% | |
| AGTATTATTCTTCTCCACAA+AGG | - | 32661:8903-8922 | MS.gene44912:intron | 30.0% | |
| AGTGATGTCACTATTCAAAT+TGG | - | 32661:6996-7015 | MS.gene44912:CDS | 30.0% | |
| AGTTTCTGATGTATGTAAGA+TGG | + | 32661:7615-7634 | None:intergenic | 30.0% | |
| ATTTGAATAGTGACATCACT+TGG | + | 32661:6996-7015 | None:intergenic | 30.0% | |
| GACCTGAAAATACCTTTATA+AGG | + | 32661:8146-8165 | None:intergenic | 30.0% | |
| GGGTTTAAAAATTGTGGTAT+TGG | - | 32661:7875-7894 | MS.gene44912:intron | 30.0% | |
| GTATTATTCTTCTCCACAAA+GGG | - | 32661:8904-8923 | MS.gene44912:intron | 30.0% | |
| TACCTTAAGATAGATGTCTA+CGG | + | 32661:9071-9090 | None:intergenic | 30.0% | |
| TCATTGCAATTAGAACTCTT+TGG | + | 32661:7847-7866 | None:intergenic | 30.0% | |
| TGAATTGAACTACTTATCAC+AGG | - | 32661:6952-6971 | MS.gene44912:CDS | 30.0% | |
| TGGTTATGAATTCTAGTACT+TGG | - | 32661:7071-7090 | MS.gene44912:CDS | 30.0% | |
| ! | AAGAGTTCTAATTGCAATGA+TGG | - | 32661:7847-7866 | MS.gene44912:intron | 30.0% |
| ! | AATTTTGCTTTCTCTGCAAT+TGG | + | 32661:7644-7663 | None:intergenic | 30.0% |
| ! | CTTCTTTTTCCTTCATTTAG+CGG | - | 32661:8791-8810 | MS.gene44912:intron | 30.0% |
| ! | GATTTTCAACTTCAGATTCA+AGG | + | 32661:8865-8884 | None:intergenic | 30.0% |
| ! | TCTGTTGTTCTTGATTTTTC+AGG | + | 32661:9031-9050 | None:intergenic | 30.0% |
| ! | TTCTGTCATTTCAAGATACT+CGG | + | 32661:7510-7529 | None:intergenic | 30.0% |
| !! | CCCAATCCAAAATTTTAAGA+TGG | + | 32661:8317-8336 | None:intergenic | 30.0% |
| !! | TGTCCACTTTTGGAAATTAA+TGG | + | 32661:7320-7339 | None:intergenic | 30.0% |
| AACTACCTTGTGTAACGAAT+AGG | + | 32661:7030-7049 | None:intergenic | 35.0% | |
| AGATTATTCGGTCGGAAATT+TGG | - | 32661:7529-7548 | MS.gene44912:intron | 35.0% | |
| ATGACAGAAGATTATTCGGT+CGG | - | 32661:7521-7540 | MS.gene44912:intron | 35.0% | |
| CCTTTATAAGGTAGGTAGTT+CGG | + | 32661:8134-8153 | None:intergenic | 35.0% | |
| CTTTCTTTCACTATGGCTTA+AGG | - | 32661:8679-8698 | MS.gene44912:intron | 35.0% | |
| GCTAGAGGGTTTAAAAATTG+TGG | - | 32661:7869-7888 | MS.gene44912:intron | 35.0% | |
| GTAAGTCCCTTTACTAAAGA+AGG | - | 32661:7941-7960 | MS.gene44912:intron | 35.0% | |
| TAATTGCAATGATGGCTAGA+GGG | - | 32661:7855-7874 | MS.gene44912:intron | 35.0% | |
| TAGCAGCAAAGTTCTGTTAT+GGG | - | 32661:7435-7454 | MS.gene44912:intron | 35.0% | |
| TATTCACAGAAATCTCTGAG+AGG | - | 32661:7914-7933 | MS.gene44912:intron | 35.0% | |
| TTTCCAAAAGTGGACACATA+AGG | - | 32661:7324-7343 | MS.gene44912:CDS | 35.0% | |
| ! | CTCCACAAAGGGATATTTTT+CGG | - | 32661:8915-8934 | MS.gene44912:CDS | 35.0% |
| ! | TATCAGTAGCTATTTCAGCA+AGG | + | 32661:8964-8983 | None:intergenic | 35.0% |
| ! | TCCACAAAGGGATATTTTTC+GGG | - | 32661:8916-8935 | MS.gene44912:CDS | 35.0% |
| !!! | TTTTCGGGTTGGAAAGTTAT+TGG | - | 32661:8931-8950 | MS.gene44912:CDS | 35.0% |
| !!! | TTTTTGGAGCAGGAGATATT+TGG | - | 32661:8551-8570 | MS.gene44912:CDS | 35.0% |
| AAATCCAGATGTCCACTATC+AGG | + | 32661:8103-8122 | None:intergenic | 40.0% | |
| AATAGCCTACATAGCTTCCA+AGG | - | 32661:7685-7704 | MS.gene44912:intron | 40.0% | |
| ACAAGTGAATGGTATGCTTC+TGG | - | 32661:6847-6866 | MS.gene44912:CDS | 40.0% | |
| ACCCGAAAAATATCCCTTTG+TGG | + | 32661:8920-8939 | None:intergenic | 40.0% | |
| ACTAAGAAACAACCAATGCG+CGG | + | 32661:7172-7191 | None:intergenic | 40.0% | |
| AGAAGGATAGCCATGCAATT+AGG | - | 32661:8749-8768 | MS.gene44912:intron | 40.0% | |
| AGCCGTAGACATCTATCTTA+AGG | - | 32661:9066-9085 | MS.gene44912:intron | 40.0% | |
| AGCTTCCTATTCGTTACACA+AGG | - | 32661:7022-7041 | MS.gene44912:CDS | 40.0% | |
| AGGAGATATTTGGAAAGGGA+AGG | - | 32661:8561-8580 | MS.gene44912:CDS | 40.0% | |
| AGGGTCTATCCAATATCTGT+TGG | + | 32661:8290-8309 | None:intergenic | 40.0% | |
| ATAAGGTAGGTAGTTCGGTA+AGG | + | 32661:8129-8148 | None:intergenic | 40.0% | |
| ATTGAACTCATCGATGTTCC+TGG | - | 32661:7392-7411 | MS.gene44912:CDS | 40.0% | |
| CCGAACTACCTACCTTATAA+AGG | - | 32661:8131-8150 | MS.gene44912:CDS | 40.0% | |
| CCTGCTCCAAAAAATAGTCA+AGG | + | 32661:8544-8563 | None:intergenic | 40.0% | |
| CTAATTGCAATGATGGCTAG+AGG | - | 32661:7854-7873 | MS.gene44912:intron | 40.0% | |
| CTAGCAGCAAAGTTCTGTTA+TGG | - | 32661:7434-7453 | MS.gene44912:intron | 40.0% | |
| CTGTCAGCTTTCTTTCACTA+TGG | - | 32661:8672-8691 | MS.gene44912:intron | 40.0% | |
| GAGCAGGAGATATTTGGAAA+GGG | - | 32661:8557-8576 | MS.gene44912:CDS | 40.0% | |
| GATATTGCATTCTTCTCCCT+TGG | + | 32661:8653-8672 | None:intergenic | 40.0% | |
| GATATTTGGAAAGGGAAGGA+AGG | - | 32661:8565-8584 | MS.gene44912:CDS | 40.0% | |
| GGGTCTATCCAATATCTGTT+GGG | + | 32661:8289-8308 | None:intergenic | 40.0% | |
| GTCTGTTAAGAGTCTCACAT+TGG | + | 32661:8178-8197 | None:intergenic | 40.0% | |
| TAAGATGAGTAGCCTGATAG+TGG | - | 32661:8088-8107 | MS.gene44912:CDS | 40.0% | |
| TATTCGGTCGGAAATTTGGT+AGG | - | 32661:7533-7552 | MS.gene44912:intron | 40.0% | |
| TCTTACAGAACCAGCTTGTA+AGG | - | 32661:8348-8367 | MS.gene44912:CDS | 40.0% | |
| TTATCACAGGAATTACTCCC+AGG | - | 32661:6965-6984 | MS.gene44912:CDS | 40.0% | |
| ! | ACAGAAATCTCTGAGAGGTT+TGG | - | 32661:7919-7938 | MS.gene44912:intron | 40.0% |
| ! | CTTCCTTATGTGTCCACTTT+TGG | + | 32661:7330-7349 | None:intergenic | 40.0% |
| ! | TGTTGCTTGCAGGTTTGATT+TGG | - | 32661:8724-8743 | MS.gene44912:intron | 40.0% |
| ! | TTGCACTAAAGAGCATGTCA+GGG | - | 32661:7582-7601 | MS.gene44912:intron | 40.0% |
| !!! | CAAAGGGATATTTTTCGGGT+TGG | - | 32661:8920-8939 | MS.gene44912:CDS | 40.0% |
| !!! | CCTTGACTATTTTTTGGAGC+AGG | - | 32661:8541-8560 | MS.gene44912:CDS | 40.0% |
| ACTCTCCTTGGAAGCTATGT+AGG | + | 32661:7693-7712 | None:intergenic | 45.0% | |
| CATTCTTCTCCCTTGGCATA+AGG | + | 32661:8646-8665 | None:intergenic | 45.0% | |
| CTCTTCTCATGCTCTTCATG+TGG | + | 32661:8599-8618 | None:intergenic | 45.0% | |
| GAAAGTGGCCCAACAGATAT+TGG | - | 32661:8278-8297 | MS.gene44912:CDS | 45.0% | |
| GACATCACTTGGAATCTCCT+GGG | + | 32661:6985-7004 | None:intergenic | 45.0% | |
| GATAGCCATGCAATTAGGAC+AGG | - | 32661:8754-8773 | MS.gene44912:intron | 45.0% | |
| GGAGCAGGAGATATTTGGAA+AGG | - | 32661:8556-8575 | MS.gene44912:CDS | 45.0% | |
| TCAAATGCTTCTGATCCACC+AGG | + | 32661:7413-7432 | None:intergenic | 45.0% | |
| TGACATCACTTGGAATCTCC+TGG | + | 32661:6986-7005 | None:intergenic | 45.0% | |
| ! | ACTAGTGAGCCTTATGCCAA+GGG | - | 32661:8634-8653 | MS.gene44912:intron | 45.0% |
| ! | ATTTAGTTGACTCCGCGCAT+TGG | - | 32661:7157-7176 | MS.gene44912:CDS | 45.0% |
| ! | GTTGCACTAAAGAGCATGTC+AGG | - | 32661:7581-7600 | MS.gene44912:intron | 45.0% |
| ! | TACTAGTGAGCCTTATGCCA+AGG | - | 32661:8633-8652 | MS.gene44912:intron | 45.0% |
| ! | TGCACTAAAGAGCATGTCAG+GGG | - | 32661:7583-7602 | MS.gene44912:intron | 45.0% |
| ! | TTGAGACAACTGTTGCTTGC+AGG | - | 32661:8714-8733 | MS.gene44912:intron | 45.0% |
| !! | ACGCTCTAGATGTCCTGTTT+TGG | + | 32661:8226-8245 | None:intergenic | 45.0% |
| !! | CGCTCTAGATGTCCTGTTTT+GGG | + | 32661:8225-8244 | None:intergenic | 45.0% |
| !! | GCAGGTTTGATTTGGAGAGA+AGG | - | 32661:8732-8751 | MS.gene44912:intron | 45.0% |
| !!! | ATGTATAATTTTTTTTTATA+CGG | - | 32661:8477-8496 | MS.gene44912:CDS | 5.0% |
| AATGTCCAGTCCTGAGTGTG+AGG | + | 32661:8061-8080 | None:intergenic | 50.0% | |
| ATGTCCAGTCCTGAGTGTGA+GGG | + | 32661:8060-8079 | None:intergenic | 50.0% | |
| CACACTCAGGACTGGACATT+TGG | - | 32661:8061-8080 | MS.gene44912:CDS | 50.0% | |
| CACAGCCTGTCCTAATTGCA+TGG | + | 32661:8762-8781 | None:intergenic | 50.0% | |
| CATCGCTATGCTTCGATGTG+TGG | - | 32661:7484-7503 | MS.gene44912:intron | 50.0% | |
| GAACTCATCGATGTTCCTGG+TGG | - | 32661:7395-7414 | MS.gene44912:CDS | 50.0% | |
| GATGTGTCGCCGCTAAATGA+AGG | + | 32661:8803-8822 | None:intergenic | 50.0% | |
| GCAATTAGGACAGGCTGTGT+TGG | - | 32661:8763-8782 | MS.gene44912:intron | 50.0% | |
| GCTTCCAAGGAGAGTCAGTT+TGG | - | 32661:7698-7717 | MS.gene44912:intron | 50.0% | |
| TCGGTCTTCACCTTACAAGC+TGG | + | 32661:8361-8380 | None:intergenic | 50.0% | |
| ! | AGGACATCTAGAGCGTGACA+CGG | - | 32661:8230-8249 | MS.gene44912:CDS | 50.0% |
| ! | CGAACCAAACTGACTCTCCT+TGG | + | 32661:7705-7724 | None:intergenic | 50.0% |
| ! | GAGAGTCAGTTTGGTTCGTC+TGG | - | 32661:7707-7726 | MS.gene44912:intron | 50.0% |
| !! | GTAGCCTGATAGTGGACATC+TGG | - | 32661:8096-8115 | MS.gene44912:CDS | 50.0% |
| !! | GTCCTGTTTTGGGCGTGAAT+GGG | + | 32661:8215-8234 | None:intergenic | 50.0% |
| !! | TCCTGTTTTGGGCGTGAATG+GGG | + | 32661:8214-8233 | None:intergenic | 50.0% |
| !! | TGTCCTGTTTTGGGCGTGAA+TGG | + | 32661:8216-8235 | None:intergenic | 50.0% |
| ACCAGAGGCCAGCTGTTGAT+TGG | - | 32661:7783-7802 | MS.gene44912:intron | 55.0% | |
| ACCCCATTCACGCCCAAAAC+AGG | - | 32661:8210-8229 | MS.gene44912:CDS | 55.0% | |
| CTTCCACTGCTTCTCACCAG+AGG | - | 32661:7768-7787 | MS.gene44912:intron | 55.0% | |
| GCACGTGACCTGGTAGAAAG+TGG | - | 32661:8263-8282 | MS.gene44912:CDS | 55.0% | |
| GGTTCGTCTGGTCGAAGTGA+TGG | - | 32661:7719-7738 | MS.gene44912:intron | 55.0% | |
| TAACACACCCCCTCACACTC+AGG | - | 32661:8048-8067 | MS.gene44912:CDS | 55.0% | |
| TCAGCCCACCAATCAACAGC+TGG | + | 32661:7794-7813 | None:intergenic | 55.0% | |
| TCTACCAGGTCACGTGCAAC+TGG | + | 32661:8260-8279 | None:intergenic | 55.0% | |
| TGTCCAGTCCTGAGTGTGAG+GGG | + | 32661:8059-8078 | None:intergenic | 55.0% | |
| ! | ACCAATCAACAGCTGGCCTC+TGG | + | 32661:7787-7806 | None:intergenic | 55.0% |
| ! | AGAGGCCAGCTGTTGATTGG+TGG | - | 32661:7786-7805 | MS.gene44912:intron | 55.0% |
| ! | CTGTTGGGCCACTTTCTACC+AGG | + | 32661:8274-8293 | None:intergenic | 55.0% |
| ! | GAGGCCAGCTGTTGATTGGT+GGG | - | 32661:7787-7806 | MS.gene44912:intron | 55.0% |
| ! | GGACATCTAGAGCGTGACAC+GGG | - | 32661:8231-8250 | MS.gene44912:CDS | 55.0% |
| ! | TTTTGGGCGTGAATGGGGTG+GGG | + | 32661:8209-8228 | None:intergenic | 55.0% |
| !! | GTTTTGGGCGTGAATGGGGT+GGG | + | 32661:8210-8229 | None:intergenic | 55.0% |
| !! | TGTTTTGGGCGTGAATGGGG+TGG | + | 32661:8211-8230 | None:intergenic | 55.0% |
| GTAGCCAGTTGCACGTGACC+TGG | - | 32661:8253-8272 | MS.gene44912:CDS | 60.0% | |
| GTCCAGTCCTGAGTGTGAGG+GGG | + | 32661:8058-8077 | None:intergenic | 60.0% | |
| TGGCCTCTGGTGAGAAGCAG+TGG | + | 32661:7774-7793 | None:intergenic | 60.0% | |
| TTTGGGCGTGAATGGGGTGG+GGG | + | 32661:8208-8227 | None:intergenic | 60.0% | |
| CACCCCCTCACACTCAGGAC+TGG | - | 32661:8053-8072 | MS.gene44912:CDS | 65.0% | |
| TTGGGCGTGAATGGGGTGGG+GGG | + | 32661:8207-8226 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32661 | gene | 6838 | 9120 | 6838 | ID=MS.gene44912 |
| 32661 | mRNA | 6838 | 9120 | 6838 | ID=MS.gene44912.t1;Parent=MS.gene44912 |
| 32661 | exon | 9101 | 9120 | 9101 | ID=MS.gene44912.t1.exon1;Parent=MS.gene44912.t1 |
| 32661 | CDS | 9101 | 9120 | 9101 | ID=cds.MS.gene44912.t1;Parent=MS.gene44912.t1 |
| 32661 | exon | 8915 | 8984 | 8915 | ID=MS.gene44912.t1.exon2;Parent=MS.gene44912.t1 |
| 32661 | CDS | 8915 | 8984 | 8915 | ID=cds.MS.gene44912.t1;Parent=MS.gene44912.t1 |
| 32661 | exon | 8018 | 8644 | 8018 | ID=MS.gene44912.t1.exon3;Parent=MS.gene44912.t1 |
| 32661 | CDS | 8018 | 8644 | 8018 | ID=cds.MS.gene44912.t1;Parent=MS.gene44912.t1 |
| 32661 | exon | 6838 | 7425 | 6838 | ID=MS.gene44912.t1.exon4;Parent=MS.gene44912.t1 |
| 32661 | CDS | 6838 | 7425 | 6838 | ID=cds.MS.gene44912.t1;Parent=MS.gene44912.t1 |
| Gene Sequence |
| Protein sequence |
