Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44940.t1 | AET04042.2 | 78 | 518 | 92 | 3 | 1 | 496 | 1 | 518 | 5.10E-227 | 797 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44940.t1 | Q9FKZ0 | 30.4 | 550 | 309 | 14 | 4 | 498 | 8 | 538 | 6.7e-50 | 199.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44940.t1 | G7LGB8 | 78.0 | 518 | 92 | 3 | 1 | 496 | 1 | 518 | 3.7e-227 | 797.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054641 | MS.gene44940 | 0.810201 | 1.30E-50 | -1.69E-46 |
MS.gene054892 | MS.gene44940 | 0.839049 | 2.00E-57 | -1.69E-46 |
MS.gene054893 | MS.gene44940 | 0.834 | 3.86E-56 | -1.69E-46 |
MS.gene059634 | MS.gene44940 | 0.81713 | 3.87E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44940.t1 | MTR_8g079550 | 77.992 | 518 | 92 | 3 | 1 | 496 | 1 | 518 | 0.0 | 811 |
MS.gene44940.t1 | MTR_8g079520 | 63.774 | 530 | 157 | 5 | 1 | 498 | 1 | 527 | 0.0 | 653 |
MS.gene44940.t1 | MTR_5g018060 | 39.227 | 543 | 264 | 14 | 9 | 499 | 4 | 532 | 8.52e-103 | 327 |
MS.gene44940.t1 | MTR_5g018210 | 37.523 | 549 | 282 | 14 | 2 | 499 | 1 | 539 | 6.61e-101 | 322 |
MS.gene44940.t1 | MTR_5g018120 | 36.803 | 538 | 280 | 13 | 6 | 498 | 5 | 527 | 5.72e-94 | 303 |
MS.gene44940.t1 | MTR_0391s0020 | 37.182 | 511 | 267 | 12 | 9 | 479 | 8 | 504 | 8.55e-86 | 281 |
MS.gene44940.t1 | MTR_8g079280 | 42.787 | 409 | 190 | 8 | 124 | 495 | 59 | 460 | 2.02e-85 | 279 |
MS.gene44940.t1 | MTR_8g079450 | 41.969 | 386 | 189 | 7 | 138 | 495 | 135 | 513 | 7.21e-83 | 273 |
MS.gene44940.t1 | MTR_8g079400 | 36.434 | 516 | 264 | 11 | 10 | 497 | 10 | 489 | 1.96e-82 | 271 |
MS.gene44940.t1 | MTR_8g079400 | 36.434 | 516 | 264 | 11 | 10 | 497 | 20 | 499 | 3.42e-82 | 271 |
MS.gene44940.t1 | MTR_8g079360 | 36.000 | 525 | 267 | 12 | 15 | 497 | 16 | 513 | 9.34e-82 | 270 |
MS.gene44940.t1 | MTR_8g479430 | 36.081 | 546 | 287 | 13 | 4 | 498 | 2 | 536 | 2.85e-79 | 264 |
MS.gene44940.t1 | MTR_8g479450 | 34.664 | 551 | 288 | 14 | 9 | 498 | 4 | 543 | 1.11e-78 | 262 |
MS.gene44940.t1 | MTR_8g079350 | 44.377 | 329 | 150 | 5 | 140 | 442 | 98 | 419 | 1.60e-75 | 244 |
MS.gene44940.t1 | MTR_5g018070 | 41.265 | 332 | 158 | 7 | 199 | 499 | 129 | 454 | 1.33e-71 | 242 |
MS.gene44940.t1 | MTR_5g018160 | 37.340 | 391 | 190 | 11 | 123 | 480 | 11 | 379 | 1.12e-65 | 218 |
MS.gene44940.t1 | MTR_5g018910 | 32.617 | 512 | 242 | 14 | 5 | 432 | 4 | 496 | 3.46e-62 | 214 |
MS.gene44940.t1 | MTR_1g021100 | 31.783 | 387 | 213 | 15 | 147 | 499 | 181 | 550 | 3.97e-39 | 152 |
MS.gene44940.t1 | MTR_8g079380 | 45.399 | 163 | 86 | 3 | 337 | 497 | 115 | 276 | 8.74e-38 | 146 |
MS.gene44940.t1 | MTR_1g021110 | 28.612 | 353 | 199 | 12 | 184 | 499 | 213 | 549 | 2.63e-28 | 119 |
MS.gene44940.t1 | MTR_5g018190 | 28.873 | 284 | 170 | 7 | 5 | 266 | 4 | 277 | 2.96e-24 | 105 |
MS.gene44940.t1 | MTR_5g018110 | 29.352 | 293 | 193 | 6 | 17 | 301 | 16 | 302 | 7.91e-23 | 101 |
MS.gene44940.t1 | MTR_7g024980 | 39.175 | 97 | 57 | 2 | 402 | 497 | 8 | 103 | 1.86e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44940.t1 | AT5G66910 | 30.364 | 550 | 309 | 14 | 4 | 498 | 8 | 538 | 8.55e-54 | 194 |
MS.gene44940.t1 | AT5G66900 | 29.197 | 548 | 308 | 15 | 8 | 499 | 58 | 581 | 3.93e-49 | 178 |
MS.gene44940.t1 | AT5G66900 | 29.068 | 547 | 308 | 15 | 8 | 498 | 10 | 532 | 1.67e-47 | 176 |
MS.gene44940.t1 | AT5G66900 | 29.174 | 545 | 306 | 15 | 8 | 496 | 58 | 578 | 3.13e-47 | 176 |
MS.gene44940.t1 | AT4G33300 | 26.325 | 547 | 330 | 16 | 12 | 499 | 9 | 541 | 5.40e-40 | 154 |
MS.gene44940.t1 | AT4G33300 | 26.325 | 547 | 330 | 16 | 12 | 499 | 9 | 541 | 5.40e-40 | 154 |
MS.gene44940.t1 | AT1G33560 | 27.844 | 334 | 220 | 10 | 176 | 499 | 191 | 513 | 6.52e-31 | 127 |
MS.gene44940.t1 | AT5G47280 | 28.116 | 345 | 217 | 9 | 176 | 499 | 14 | 348 | 1.68e-30 | 125 |
MS.gene44940.t1 | AT5G04720 | 27.532 | 385 | 222 | 11 | 147 | 499 | 177 | 536 | 2.83e-30 | 125 |
MS.gene44940.t1 | AT5G66630 | 27.245 | 323 | 213 | 6 | 2 | 307 | 6 | 323 | 2.53e-23 | 104 |
MS.gene44940.t1 | AT5G66890 | 31.818 | 132 | 76 | 6 | 373 | 498 | 14 | 137 | 6.86e-12 | 67.8 |
Find 119 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATGTTTGCTCAACAAAAT+TGG | 0.165600 | 8.1:-28153959 | MS.gene44940:CDS |
TTGTTTGGACTAGGAAAATT+TGG | 0.173754 | 8.1:-28154109 | MS.gene44940:intron |
AATTCCAAGCTTTGGATATC+TGG | 0.234644 | 8.1:+28154888 | None:intergenic |
AACCATTTGAACTAAGAAAA+AGG | 0.273976 | 8.1:-28152687 | MS.gene44940:CDS |
TGCACGATGTTCTTCAAATC+TGG | 0.276271 | 8.1:+28154052 | None:intergenic |
CTAGACGACGACGACATAAA+AGG | 0.298710 | 8.1:-28152996 | MS.gene44940:CDS |
TGCAGATAGCAAAGGGTTGC+TGG | 0.319928 | 8.1:-28153286 | MS.gene44940:intron |
GATGTTTGCTCAACAAAATT+GGG | 0.330931 | 8.1:-28153958 | MS.gene44940:CDS |
TGTTTGGACTAGGAAAATTT+GGG | 0.345804 | 8.1:-28154108 | MS.gene44940:intron |
GATCCTATGGTTCCATCATT+TGG | 0.345907 | 8.1:+28153737 | None:intergenic |
TTGATTGAAGGGGCTGCTCT+TGG | 0.348904 | 8.1:-28154947 | MS.gene44940:CDS |
ATCCTTTGTTAATGCCTTCA+AGG | 0.350498 | 8.1:-28153885 | MS.gene44940:intron |
TTAACTGGCTTGGCTGGATC+CGG | 0.379055 | 8.1:-28154434 | MS.gene44940:CDS |
TCGACGTCAATGAAAATAGT+TGG | 0.379643 | 8.1:-28152657 | MS.gene44940:CDS |
GTTTAATAGTTTCGTTTCTT+CGG | 0.382650 | 8.1:+28154811 | None:intergenic |
CCTTGTTAACGCAATTATCA+TGG | 0.391490 | 8.1:-28154618 | MS.gene44940:CDS |
GACTCTGTACATGTGTTAAC+TGG | 0.395071 | 8.1:-28154449 | MS.gene44940:CDS |
CATGTGTTAACTGGCTTGGC+TGG | 0.403135 | 8.1:-28154440 | MS.gene44940:CDS |
TAAGCTAACCAACCGGCATT+TGG | 0.405432 | 8.1:-28152958 | MS.gene44940:CDS |
CTTTGGCGACGTTGCTATGT+TGG | 0.410021 | 8.1:-28154403 | MS.gene44940:CDS |
CAAGATCTACTAGATATTTG+AGG | 0.410544 | 8.1:+28154846 | None:intergenic |
AGTTTCGTTTCTTCGGCAAC+TGG | 0.412207 | 8.1:+28154818 | None:intergenic |
CATCATCAAGGAGTGCTTCA+TGG | 0.412535 | 8.1:-28153093 | MS.gene44940:CDS |
GGGTTGCTGGGGTTCTCCAC+TGG | 0.412916 | 8.1:-28153273 | MS.gene44940:CDS |
TGGATCCGGGAAAACCTCTT+TGG | 0.416588 | 8.1:-28154420 | MS.gene44940:CDS |
TTTGGCGACGTTGCTATGTT+GGG | 0.423380 | 8.1:-28154402 | MS.gene44940:CDS |
TACTCAACATGACCTTCTTA+AGG | 0.424366 | 8.1:-28152737 | MS.gene44940:CDS |
TGGTTAAGCTTGTAGTTTCA+AGG | 0.430293 | 8.1:-28152938 | MS.gene44940:intron |
GTATAGAATGGAAGATATGC+AGG | 0.431393 | 8.1:-28154573 | MS.gene44940:CDS |
CGACGTCAATGAAAATAGTT+GGG | 0.431626 | 8.1:-28152656 | MS.gene44940:CDS |
CTATGGGAGAGAAAATTTCT+AGG | 0.435829 | 8.1:-28154649 | MS.gene44940:CDS |
ATGGTAGGAGGGTTGATTGA+AGG | 0.440809 | 8.1:-28154959 | MS.gene44940:CDS |
CGCTGTTCATCAAGCTAGAC+AGG | 0.455959 | 8.1:-28152710 | MS.gene44940:CDS |
CTCTGCGTGAGTTGAAGAAA+TGG | 0.456262 | 8.1:-28154496 | MS.gene44940:CDS |
CCAAGGAGAACTTCATGCTA+TGG | 0.456268 | 8.1:-28154666 | MS.gene44940:CDS |
GTAAAACCTGATTTCACTGT+TGG | 0.463801 | 8.1:-28154530 | MS.gene44940:CDS |
TAACAAAGGATTCTGAGTCT+TGG | 0.464330 | 8.1:+28153897 | None:intergenic |
TGTTGGGATGACAAAGTGAT+AGG | 0.470897 | 8.1:-28154386 | MS.gene44940:intron |
TAAAGAGATATTGTATAGAA+TGG | 0.471779 | 8.1:-28154585 | MS.gene44940:CDS |
ATATGGAAGTTGAACCTTGA+AGG | 0.472224 | 8.1:+28153871 | None:intergenic |
CAAACATTGTTTAAACATTG+TGG | 0.473505 | 8.1:-28154031 | MS.gene44940:CDS |
ACCTGATTTCACTGTTGGGT+TGG | 0.474969 | 8.1:-28154525 | MS.gene44940:CDS |
TGGTAGGAGGGTTGATTGAA+GGG | 0.476144 | 8.1:-28154958 | MS.gene44940:CDS |
GCAGATAGCAAAGGGTTGCT+GGG | 0.476918 | 8.1:-28153285 | MS.gene44940:intron |
TGCTGTACATCATCTTCATC+AGG | 0.479579 | 8.1:+28153707 | None:intergenic |
TCGATTGGTGGATCACTCAA+TGG | 0.481414 | 8.1:-28153242 | MS.gene44940:CDS |
CCATGATAATTGCGTTAACA+AGG | 0.482184 | 8.1:+28154618 | None:intergenic |
ATCAGGAACGTAAGATCCTA+TGG | 0.483010 | 8.1:+28153724 | None:intergenic |
TATTGAGGCGTGGAAAGAAA+TGG | 0.487029 | 8.1:-28153213 | MS.gene44940:CDS |
TCCAACCCAACAGTGAAATC+AGG | 0.487100 | 8.1:+28154524 | None:intergenic |
TGTACATGTGTTAACTGGCT+TGG | 0.492399 | 8.1:-28154444 | MS.gene44940:CDS |
TTGGATATCTGGTTTGTGAA+TGG | 0.492712 | 8.1:+28154899 | None:intergenic |
TAAAACCTGATTTCACTGTT+GGG | 0.492772 | 8.1:-28154529 | MS.gene44940:CDS |
TAAGAAGGTCATGTTGAGTA+AGG | 0.493602 | 8.1:+28152740 | None:intergenic |
CCGCATCATCATGGTCTACA+AGG | 0.493706 | 8.1:+28153993 | None:intergenic |
AAACTTCTGCCAGGGGACAT+TGG | 0.497285 | 8.1:+28154706 | None:intergenic |
CACTCATTTGCAGATAGCAA+AGG | 0.497903 | 8.1:-28153294 | MS.gene44940:intron |
GGTCATGTTGAGTAAGGAAA+TGG | 0.498599 | 8.1:+28152746 | None:intergenic |
AATTGCGTTAACAAGGGTAA+TGG | 0.500316 | 8.1:+28154625 | None:intergenic |
AAGGAGTGCTTCATGGACCT+TGG | 0.503936 | 8.1:-28153086 | MS.gene44940:CDS |
CTTCATCCAGATATGGTAGG+AGG | 0.505158 | 8.1:-28154971 | None:intergenic |
CACTTTGCACTACCAAATGA+TGG | 0.505886 | 8.1:-28153749 | MS.gene44940:CDS |
GGAAATGGTGGTTGTAGTAA+TGG | 0.509015 | 8.1:+28152761 | None:intergenic |
TTATCTAGAACCAACATCAA+TGG | 0.513284 | 8.1:+28153926 | None:intergenic |
TCATCATGGTCTACAAGGTA+AGG | 0.515210 | 8.1:+28153998 | None:intergenic |
TGATGAAGATGATGTACAGC+AGG | 0.517213 | 8.1:-28153705 | MS.gene44940:intron |
CAAACCAGATATCCAAAGCT+TGG | 0.520100 | 8.1:-28154892 | MS.gene44940:CDS |
CGATTGGTGGATCACTCAAT+GGG | 0.523708 | 8.1:-28153241 | MS.gene44940:CDS |
CCATAGCATGAAGTTCTCCT+TGG | 0.529083 | 8.1:+28154666 | None:intergenic |
ACTCATTTGCAGATAGCAAA+GGG | 0.530445 | 8.1:-28153293 | MS.gene44940:intron |
GGGAAGTTGTCCATTGATGT+TGG | 0.534475 | 8.1:-28153936 | MS.gene44940:CDS |
ACTCAATGGGCAACATATTG+AGG | 0.534760 | 8.1:-28153228 | MS.gene44940:CDS |
CCACTGGCACTTGAATCGAT+TGG | 0.537369 | 8.1:-28153257 | MS.gene44940:CDS |
TATTGACAATGTGCGGGCAA+TGG | 0.540606 | 8.1:+28152612 | None:intergenic |
ATTGCATCTTCATCTCTAAG+TGG | 0.542867 | 8.1:+28153785 | None:intergenic |
CTTGTTAACGCAATTATCAT+GGG | 0.543970 | 8.1:-28154617 | MS.gene44940:CDS |
TAACTGGCTTGGCTGGATCC+GGG | 0.550730 | 8.1:-28154433 | MS.gene44940:CDS |
CTAATAGATGAACTGAAACA+AGG | 0.551030 | 8.1:-28154752 | MS.gene44940:CDS |
CAAGGAGAACTTCATGCTAT+GGG | 0.552718 | 8.1:-28154665 | MS.gene44940:CDS |
AAATATATTGTTCATTCCTG+TGG | 0.555039 | 8.1:-28154083 | MS.gene44940:CDS |
TTGTTCATAAGCTAACCAAC+CGG | 0.556409 | 8.1:-28152965 | MS.gene44940:CDS |
GAACAGCGATCTCCTTAAGA+AGG | 0.557821 | 8.1:+28152725 | None:intergenic |
TTCATCCAGATATGGTAGGA+GGG | 0.559072 | 8.1:-28154970 | None:intergenic |
CGCACATTGTCAATATACTC+TGG | 0.562780 | 8.1:-28152604 | MS.gene44940:CDS |
TTAACGCAATTATCATGGGA+AGG | 0.564589 | 8.1:-28154613 | MS.gene44940:CDS |
TAATAGATGAACTGAAACAA+GGG | 0.567667 | 8.1:-28154751 | MS.gene44940:CDS |
AACCTTGAAGGCATTAACAA+AGG | 0.568854 | 8.1:+28153883 | None:intergenic |
ATGGTGAACATGTTGTCAAA+AGG | 0.571571 | 8.1:-28153194 | MS.gene44940:CDS |
CTGGCACTTGAATCGATTGG+TGG | 0.571887 | 8.1:-28153254 | MS.gene44940:CDS |
ATGTTTGCTCAACAAAATTG+GGG | 0.572176 | 8.1:-28153957 | MS.gene44940:CDS |
CAGAGTATATTGACAATGTG+CGG | 0.573948 | 8.1:+28152605 | None:intergenic |
AGTTCTTAACCGCATCATCA+TGG | 0.576250 | 8.1:+28153984 | None:intergenic |
CTACCAAATGATGGAACCAT+AGG | 0.578894 | 8.1:-28153740 | MS.gene44940:CDS |
AGAGTATATTGACAATGTGC+GGG | 0.580505 | 8.1:+28152606 | None:intergenic |
TAACGCAATTATCATGGGAA+GGG | 0.582817 | 8.1:-28154612 | MS.gene44940:CDS |
TCTGCGTGAGTTGAAGAAAT+GGG | 0.584537 | 8.1:-28154495 | MS.gene44940:CDS |
GCAAGATAATCACATCATCA+AGG | 0.586026 | 8.1:-28153105 | MS.gene44940:CDS |
ACATAGCAACGTCGCCAAAG+AGG | 0.596462 | 8.1:+28154406 | None:intergenic |
CAGATAGCAAAGGGTTGCTG+GGG | 0.596881 | 8.1:-28153284 | MS.gene44940:CDS |
TGGCTGCTCTCATTGACATG+TGG | 0.597866 | 8.1:-28153034 | MS.gene44940:CDS |
TTTCTTCATCCAGATATGGT+AGG | 0.601324 | 8.1:-28154974 | None:intergenic |
TTTCTTCTATCTATTTACCA+AGG | 0.602292 | 8.1:-28154683 | MS.gene44940:CDS |
ACAAATACTCCAATGTCCCC+TGG | 0.604530 | 8.1:-28154715 | MS.gene44940:CDS |
GTTTGGACTAGGAAAATTTG+GGG | 0.607558 | 8.1:-28154107 | MS.gene44940:intron |
CTACAAGCTTAACCAAATGC+CGG | 0.609703 | 8.1:+28152946 | None:intergenic |
CATGATAATTGCGTTAACAA+GGG | 0.611910 | 8.1:+28154619 | None:intergenic |
AAGCTTAACCAAATGCCGGT+TGG | 0.615174 | 8.1:+28152950 | None:intergenic |
TATAGAATGGAAGATATGCA+GGG | 0.619726 | 8.1:-28154572 | MS.gene44940:CDS |
GGTAGGAGGGTTGATTGAAG+GGG | 0.625936 | 8.1:-28154957 | MS.gene44940:CDS |
CCTTGTAGACCATGATGATG+CGG | 0.629365 | 8.1:-28153993 | MS.gene44940:CDS |
ATGTCAATGAGAGCAGCCAC+AGG | 0.629975 | 8.1:+28153038 | None:intergenic |
CATGTTGAGTAAGGAAATGG+TGG | 0.646683 | 8.1:+28152749 | None:intergenic |
CCAATCGATTCAAGTGCCAG+TGG | 0.651125 | 8.1:+28153257 | None:intergenic |
CATTTCTTCAACTCACGCAG+AGG | 0.651801 | 8.1:+28154497 | None:intergenic |
CATTTGGTAGTGCAAAGTGA+CGG | 0.652667 | 8.1:+28153753 | None:intergenic |
ATGGGCAACATATTGAGGCG+TGG | 0.653138 | 8.1:-28153223 | MS.gene44940:CDS |
GTGAACATGTTGTCAAAAGG+TGG | 0.680176 | 8.1:-28153191 | MS.gene44940:CDS |
TGTTTGCTCAACAAAATTGG+GGG | 0.683848 | 8.1:-28153956 | MS.gene44940:CDS |
ATAGAATGGAAGATATGCAG+GGG | 0.703826 | 8.1:-28154571 | MS.gene44940:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATAATAAGTAATTTTCA+TGG | - | chr8.1:28154089-28154108 | MS.gene44940:CDS | 10.0% |
!!! | AATCTAGAGAATATATTTTA+GGG | - | chr8.1:28154708-28154727 | MS.gene44940:CDS | 15.0% |
!!! | GTTATCAGAATTTTATAATA+TGG | + | chr8.1:28153708-28153727 | None:intergenic | 15.0% |
!!! | TAATCTAGAGAATATATTTT+AGG | - | chr8.1:28154707-28154726 | MS.gene44940:CDS | 15.0% |
!!! | TATATAATAAAAGAAAGTGT+TGG | - | chr8.1:28154178-28154197 | MS.gene44940:intron | 15.0% |
!! | TAAAGAGATATTGTATAGAA+TGG | - | chr8.1:28152974-28152993 | MS.gene44940:CDS | 20.0% |
!! | TAATGATGAAATACAAAAGA+GGG | + | chr8.1:28154072-28154091 | None:intergenic | 20.0% |
!! | TTAATGATGAAATACAAAAG+AGG | + | chr8.1:28154073-28154092 | None:intergenic | 20.0% |
!!! | TTAAGATATTGACTATTACT+AGG | + | chr8.1:28153894-28153913 | None:intergenic | 20.0% |
! | AAATATATTGTTCATTCCTG+TGG | - | chr8.1:28153476-28153495 | MS.gene44940:intron | 25.0% |
! | AACCATTTGAACTAAGAAAA+AGG | - | chr8.1:28154872-28154891 | MS.gene44940:CDS | 25.0% |
! | ATAACATTTGATCATTAACC+AGG | - | chr8.1:28154755-28154774 | MS.gene44940:CDS | 25.0% |
! | ATGAATTTGACAAAATCTGA+TGG | + | chr8.1:28154130-28154149 | None:intergenic | 25.0% |
! | CAAACATTGTTTAAACATTG+TGG | - | chr8.1:28153528-28153547 | MS.gene44940:intron | 25.0% |
! | GTTTAATAGTTTCGTTTCTT+CGG | + | chr8.1:28152751-28152770 | None:intergenic | 25.0% |
! | TAACATTTGATCATTAACCA+GGG | - | chr8.1:28154756-28154775 | MS.gene44940:CDS | 25.0% |
! | TAATAGATGAACTGAAACAA+GGG | - | chr8.1:28152808-28152827 | MS.gene44940:intron | 25.0% |
! | TGAATTTGACAAAATCTGAT+GGG | + | chr8.1:28154129-28154148 | None:intergenic | 25.0% |
! | TGTCTTCAAAAAATAATCCA+AGG | + | chr8.1:28154493-28154512 | None:intergenic | 25.0% |
! | TTTCTTCTATCTATTTACCA+AGG | - | chr8.1:28152876-28152895 | MS.gene44940:intron | 25.0% |
!! | AACCTTTTTCTTAGTTCAAA+TGG | + | chr8.1:28154877-28154896 | None:intergenic | 25.0% |
!! | AAGAATCTTGTTTGTTTGTT+TGG | - | chr8.1:28153435-28153454 | MS.gene44940:intron | 25.0% |
!!! | ATAATAAAAGAAAGTGTTGG+TGG | - | chr8.1:28154181-28154200 | MS.gene44940:intron | 25.0% |
AGATGTTTGCTCAACAAAAT+TGG | - | chr8.1:28153600-28153619 | MS.gene44940:intron | 30.0% | |
AGTCAATATCTTAACAAAGC+CGG | - | chr8.1:28153900-28153919 | MS.gene44940:CDS | 30.0% | |
ATGTTTGCTCAACAAAATTG+GGG | - | chr8.1:28153602-28153621 | MS.gene44940:intron | 30.0% | |
CAAGATCTACTAGATATTTG+AGG | + | chr8.1:28152716-28152735 | None:intergenic | 30.0% | |
CATGATAATTGCGTTAACAA+GGG | + | chr8.1:28152943-28152962 | None:intergenic | 30.0% | |
CTAATAGATGAACTGAAACA+AGG | - | chr8.1:28152807-28152826 | MS.gene44940:intron | 30.0% | |
CTTGTTAACGCAATTATCAT+GGG | - | chr8.1:28152942-28152961 | MS.gene44940:CDS | 30.0% | |
GATGTTTGCTCAACAAAATT+GGG | - | chr8.1:28153601-28153620 | MS.gene44940:intron | 30.0% | |
TAAAACCTGATTTCACTGTT+GGG | - | chr8.1:28153030-28153049 | MS.gene44940:CDS | 30.0% | |
TATAGAATGGAAGATATGCA+GGG | - | chr8.1:28152987-28153006 | MS.gene44940:CDS | 30.0% | |
TGAAGACAAAAAAATACCTG+TGG | - | chr8.1:28154505-28154524 | MS.gene44940:CDS | 30.0% | |
! | TGTTTGGACTAGGAAAATTT+GGG | - | chr8.1:28153451-28153470 | MS.gene44940:intron | 30.0% |
! | TTATCTAGAACCAACATCAA+TGG | + | chr8.1:28153636-28153655 | None:intergenic | 30.0% |
! | TTGTTTGGACTAGGAAAATT+TGG | - | chr8.1:28153450-28153469 | MS.gene44940:intron | 30.0% |
!! | AACGTTTTCTGTTTCTTGAT+CGG | + | chr8.1:28154688-28154707 | None:intergenic | 30.0% |
!! | AATAATGAAGTTCTAAACCG+TGG | + | chr8.1:28153747-28153766 | None:intergenic | 30.0% |
AATTGCGTTAACAAGGGTAA+TGG | + | chr8.1:28152937-28152956 | None:intergenic | 35.0% | |
ACCTTATGAATGAAGTCAGT+TGG | + | chr8.1:28153311-28153330 | None:intergenic | 35.0% | |
ACTCATTTGCAGATAGCAAA+GGG | - | chr8.1:28154266-28154285 | MS.gene44940:intron | 35.0% | |
AGAAGAAAAAACTTCTGCCA+GGG | + | chr8.1:28152864-28152883 | None:intergenic | 35.0% | |
AGAGTATATTGACAATGTGC+GGG | + | chr8.1:28154956-28154975 | None:intergenic | 35.0% | |
ATAGAATGGAAGATATGCAG+GGG | - | chr8.1:28152988-28153007 | MS.gene44940:CDS | 35.0% | |
ATATGGAAGTTGAACCTTGA+AGG | + | chr8.1:28153691-28153710 | None:intergenic | 35.0% | |
ATCCTTTGTTAATGCCTTCA+AGG | - | chr8.1:28153674-28153693 | MS.gene44940:intron | 35.0% | |
ATGGTGAACATGTTGTCAAA+AGG | - | chr8.1:28154365-28154384 | MS.gene44940:intron | 35.0% | |
ATTGCATCTTCATCTCTAAG+TGG | + | chr8.1:28153777-28153796 | None:intergenic | 35.0% | |
CAAAGTTGCAGAAATTGTTG+TGG | - | chr8.1:28153338-28153357 | MS.gene44940:intron | 35.0% | |
CAAATGAGTGCAAGCAAATT+AGG | + | chr8.1:28154255-28154274 | None:intergenic | 35.0% | |
CAGAGTATATTGACAATGTG+CGG | + | chr8.1:28154957-28154976 | None:intergenic | 35.0% | |
CCATGATAATTGCGTTAACA+AGG | + | chr8.1:28152944-28152963 | None:intergenic | 35.0% | |
CCTTGTTAACGCAATTATCA+TGG | - | chr8.1:28152941-28152960 | MS.gene44940:CDS | 35.0% | |
CGACGTCAATGAAAATAGTT+GGG | - | chr8.1:28154903-28154922 | MS.gene44940:CDS | 35.0% | |
CTATGGGAGAGAAAATTTCT+AGG | - | chr8.1:28152910-28152929 | MS.gene44940:intron | 35.0% | |
CTTGTTTGTTTGTTTGGACT+AGG | - | chr8.1:28153441-28153460 | MS.gene44940:intron | 35.0% | |
GCAAGATAATCACATCATCA+AGG | - | chr8.1:28154454-28154473 | MS.gene44940:CDS | 35.0% | |
GTAAAACCTGATTTCACTGT+TGG | - | chr8.1:28153029-28153048 | MS.gene44940:CDS | 35.0% | |
GTATAGAATGGAAGATATGC+AGG | - | chr8.1:28152986-28153005 | MS.gene44940:CDS | 35.0% | |
TAACAAAGGATTCTGAGTCT+TGG | + | chr8.1:28153665-28153684 | None:intergenic | 35.0% | |
TAACGCAATTATCATGGGAA+GGG | - | chr8.1:28152947-28152966 | MS.gene44940:CDS | 35.0% | |
TAAGAAGGTCATGTTGAGTA+AGG | + | chr8.1:28154822-28154841 | None:intergenic | 35.0% | |
TACTCAACATGACCTTCTTA+AGG | - | chr8.1:28154822-28154841 | MS.gene44940:CDS | 35.0% | |
TAGAAGAAAAAACTTCTGCC+AGG | + | chr8.1:28152865-28152884 | None:intergenic | 35.0% | |
TCGACGTCAATGAAAATAGT+TGG | - | chr8.1:28154902-28154921 | MS.gene44940:CDS | 35.0% | |
TGGTTAAGCTTGTAGTTTCA+AGG | - | chr8.1:28154621-28154640 | MS.gene44940:CDS | 35.0% | |
TGTTTGCTCAACAAAATTGG+GGG | - | chr8.1:28153603-28153622 | MS.gene44940:intron | 35.0% | |
TTAACGCAATTATCATGGGA+AGG | - | chr8.1:28152946-28152965 | MS.gene44940:CDS | 35.0% | |
TTGTTCATAAGCTAACCAAC+CGG | - | chr8.1:28154594-28154613 | MS.gene44940:CDS | 35.0% | |
! | ACAGTGAAATCAGGTTTTAC+AGG | + | chr8.1:28153029-28153048 | None:intergenic | 35.0% |
! | GTTTGGACTAGGAAAATTTG+GGG | - | chr8.1:28153452-28153471 | MS.gene44940:intron | 35.0% |
! | TGATCGCTTGCAAAAAGTTT+TGG | - | chr8.1:28154421-28154440 | MS.gene44940:CDS | 35.0% |
! | TTGGATATCTGGTTTGTGAA+TGG | + | chr8.1:28152663-28152682 | None:intergenic | 35.0% |
!! | AACCTTGAAGGCATTAACAA+AGG | + | chr8.1:28153679-28153698 | None:intergenic | 35.0% |
!! | AATTCCAAGCTTTGGATATC+TGG | + | chr8.1:28152674-28152693 | None:intergenic | 35.0% |
!! | ATATTTGAGGTTTTCACGAG+TGG | + | chr8.1:28152703-28152722 | None:intergenic | 35.0% |
!! | CTTCTAGAGTTAAGTTTCCA+CGG | - | chr8.1:28153727-28153746 | MS.gene44940:CDS | 35.0% |
!!! | AAATCTGGATTTTTTGCCAC+AGG | + | chr8.1:28153495-28153514 | None:intergenic | 35.0% |
!!! | GGTTTTGAAATTCCAAGCTT+TGG | + | chr8.1:28152682-28152701 | None:intergenic | 35.0% |
ACTCAATGGGCAACATATTG+AGG | - | chr8.1:28154331-28154350 | MS.gene44940:intron | 40.0% | |
AGTTCTTAACCGCATCATCA+TGG | + | chr8.1:28153578-28153597 | None:intergenic | 40.0% | |
ATATCTTAACAAAGCCGGCT+TGG | - | chr8.1:28153905-28153924 | MS.gene44940:CDS | 40.0% | |
ATCAGGAACGTAAGATCCTA+TGG | + | chr8.1:28153838-28153857 | None:intergenic | 40.0% | |
CAAACCAGATATCCAAAGCT+TGG | - | chr8.1:28152667-28152686 | MS.gene44940:CDS | 40.0% | |
CAAGGAGAACTTCATGCTAT+GGG | - | chr8.1:28152894-28152913 | MS.gene44940:intron | 40.0% | |
CACTCATTTGCAGATAGCAA+AGG | - | chr8.1:28154265-28154284 | MS.gene44940:intron | 40.0% | |
CACTTTGCACTACCAAATGA+TGG | - | chr8.1:28153810-28153829 | MS.gene44940:intron | 40.0% | |
CAGTTGGCGAGTTAGTTAAA+AGG | + | chr8.1:28153295-28153314 | None:intergenic | 40.0% | |
CATGTTGAGTAAGGAAATGG+TGG | + | chr8.1:28154813-28154832 | None:intergenic | 40.0% | |
CGCACATTGTCAATATACTC+TGG | - | chr8.1:28154955-28154974 | MS.gene44940:CDS | 40.0% | |
CTACAAGCTTAACCAAATGC+CGG | + | chr8.1:28154616-28154635 | None:intergenic | 40.0% | |
GAAGAAAAAACTTCTGCCAG+GGG | + | chr8.1:28152863-28152882 | None:intergenic | 40.0% | |
GACTCTGTACATGTGTTAAC+TGG | - | chr8.1:28153110-28153129 | MS.gene44940:CDS | 40.0% | |
GATCCTATGGTTCCATCATT+TGG | + | chr8.1:28153825-28153844 | None:intergenic | 40.0% | |
GGAAATGGTGGTTGTAGTAA+TGG | + | chr8.1:28154801-28154820 | None:intergenic | 40.0% | |
GGTCATGTTGAGTAAGGAAA+TGG | + | chr8.1:28154816-28154835 | None:intergenic | 40.0% | |
GTGAACATGTTGTCAAAAGG+TGG | - | chr8.1:28154368-28154387 | MS.gene44940:intron | 40.0% | |
TATTGAGGCGTGGAAAGAAA+TGG | - | chr8.1:28154346-28154365 | MS.gene44940:intron | 40.0% | |
TCATCATGGTCTACAAGGTA+AGG | + | chr8.1:28153564-28153583 | None:intergenic | 40.0% | |
TGATGAAGATGATGTACAGC+AGG | - | chr8.1:28153854-28153873 | MS.gene44940:intron | 40.0% | |
TGCACGATGTTCTTCAAATC+TGG | + | chr8.1:28153510-28153529 | None:intergenic | 40.0% | |
TGCTGTACATCATCTTCATC+AGG | + | chr8.1:28153855-28153874 | None:intergenic | 40.0% | |
TGTACATGTGTTAACTGGCT+TGG | - | chr8.1:28153115-28153134 | MS.gene44940:CDS | 40.0% | |
TGTTGGGATGACAAAGTGAT+AGG | - | chr8.1:28153173-28153192 | MS.gene44940:CDS | 40.0% | |
! | AGCAAATTAGGTTAGCTACG+AGG | + | chr8.1:28154243-28154262 | None:intergenic | 40.0% |
! | ATTCTCCCTAGTGCCAATTT+TGG | - | chr8.1:28153966-28153985 | MS.gene44940:CDS | 40.0% |
! | CTACCAAATGATGGAACCAT+AGG | - | chr8.1:28153819-28153838 | MS.gene44940:intron | 40.0% |
! | GCCAACTGACTTCATTCATA+AGG | - | chr8.1:28153307-28153326 | MS.gene44940:intron | 40.0% |
! | TACAAAAGAGGGTGTAACTC+TGG | + | chr8.1:28154061-28154080 | None:intergenic | 40.0% |
! | TCTGCGTGAGTTGAAGAAAT+GGG | - | chr8.1:28153064-28153083 | MS.gene44940:CDS | 40.0% |
!! | CATTTGGTAGTGCAAAGTGA+CGG | + | chr8.1:28153809-28153828 | None:intergenic | 40.0% |
!!! | TGGCATTTTGTTGGTTCTGT+TGG | + | chr8.1:28154930-28154949 | None:intergenic | 40.0% |
AAGCTTAACCAAATGCCGGT+TGG | + | chr8.1:28154612-28154631 | None:intergenic | 45.0% | |
ACAAATACTCCAATGTCCCC+TGG | - | chr8.1:28152844-28152863 | MS.gene44940:intron | 45.0% | |
ACCTGATTTCACTGTTGGGT+TGG | - | chr8.1:28153034-28153053 | MS.gene44940:CDS | 45.0% | |
AGTCCACCAAAATTGGCACT+AGG | + | chr8.1:28153975-28153994 | None:intergenic | 45.0% | |
AGTTTCGTTTCTTCGGCAAC+TGG | + | chr8.1:28152744-28152763 | None:intergenic | 45.0% | |
CATTTCTTCAACTCACGCAG+AGG | + | chr8.1:28153065-28153084 | None:intergenic | 45.0% | |
CCAAGGAGAACTTCATGCTA+TGG | - | chr8.1:28152893-28152912 | MS.gene44940:intron | 45.0% | |
CCATAGCATGAAGTTCTCCT+TGG | + | chr8.1:28152896-28152915 | None:intergenic | 45.0% | |
CTAGACGACGACGACATAAA+AGG | - | chr8.1:28154563-28154582 | MS.gene44940:CDS | 45.0% | |
GAACAGCGATCTCCTTAAGA+AGG | + | chr8.1:28154837-28154856 | None:intergenic | 45.0% | |
GGGAAGTTGTCCATTGATGT+TGG | - | chr8.1:28153623-28153642 | MS.gene44940:intron | 45.0% | |
GTCCACCAAAATTGGCACTA+GGG | + | chr8.1:28153974-28153993 | None:intergenic | 45.0% | |
TAAGCTAACCAACCGGCATT+TGG | - | chr8.1:28154601-28154620 | MS.gene44940:CDS | 45.0% | |
TATTGACAATGTGCGGGCAA+TGG | + | chr8.1:28154950-28154969 | None:intergenic | 45.0% | |
TCAAAACCTGAGACCTTGAG+AGG | + | chr8.1:28153947-28153966 | None:intergenic | 45.0% | |
TCCAACCCAACAGTGAAATC+AGG | + | chr8.1:28153038-28153057 | None:intergenic | 45.0% | |
TTTGGCGACGTTGCTATGTT+GGG | - | chr8.1:28153157-28153176 | MS.gene44940:CDS | 45.0% | |
! | ATGGTAGGAGGGTTGATTGA+AGG | - | chr8.1:28152600-28152619 | MS.gene44940:CDS | 45.0% |
! | CCAGACTAGTCCACCAAAAT+TGG | + | chr8.1:28153982-28154001 | None:intergenic | 45.0% |
! | CCTTGTAGACCATGATGATG+CGG | - | chr8.1:28153566-28153585 | MS.gene44940:intron | 45.0% |
! | CGATTGGTGGATCACTCAAT+GGG | - | chr8.1:28154318-28154337 | MS.gene44940:intron | 45.0% |
! | CTCTGCGTGAGTTGAAGAAA+TGG | - | chr8.1:28153063-28153082 | MS.gene44940:CDS | 45.0% |
! | CTTTTATGTCGTCGTCGTCT+AGG | + | chr8.1:28154565-28154584 | None:intergenic | 45.0% |
! | TCGATTGGTGGATCACTCAA+TGG | - | chr8.1:28154317-28154336 | MS.gene44940:intron | 45.0% |
! | TGGTAGGAGGGTTGATTGAA+GGG | - | chr8.1:28152601-28152620 | MS.gene44940:CDS | 45.0% |
!! | CATCATCAAGGAGTGCTTCA+TGG | - | chr8.1:28154466-28154485 | MS.gene44940:CDS | 45.0% |
!!! | CCAATTTTGGTGGACTAGTC+TGG | - | chr8.1:28153979-28153998 | MS.gene44940:CDS | 45.0% |
AAACTTCTGCCAGGGGACAT+TGG | + | chr8.1:28152856-28152875 | None:intergenic | 50.0% | |
ACATAGCAACGTCGCCAAAG+AGG | + | chr8.1:28153156-28153175 | None:intergenic | 50.0% | |
ATGGGCAACATATTGAGGCG+TGG | - | chr8.1:28154336-28154355 | MS.gene44940:intron | 50.0% | |
ATGTCAATGAGAGCAGCCAC+AGG | + | chr8.1:28154524-28154543 | None:intergenic | 50.0% | |
CAGATAGCAAAGGGTTGCTG+GGG | - | chr8.1:28154275-28154294 | MS.gene44940:intron | 50.0% | |
CCACTGGCACTTGAATCGAT+TGG | - | chr8.1:28154302-28154321 | MS.gene44940:intron | 50.0% | |
CCGCATCATCATGGTCTACA+AGG | + | chr8.1:28153569-28153588 | None:intergenic | 50.0% | |
CGCTGTTCATCAAGCTAGAC+AGG | - | chr8.1:28154849-28154868 | MS.gene44940:CDS | 50.0% | |
CTGGCACTTGAATCGATTGG+TGG | - | chr8.1:28154305-28154324 | MS.gene44940:intron | 50.0% | |
CTTTGGCGACGTTGCTATGT+TGG | - | chr8.1:28153156-28153175 | MS.gene44940:CDS | 50.0% | |
GCAGATAGCAAAGGGTTGCT+GGG | - | chr8.1:28154274-28154293 | MS.gene44940:intron | 50.0% | |
TGCAGATAGCAAAGGGTTGC+TGG | - | chr8.1:28154273-28154292 | MS.gene44940:intron | 50.0% | |
TGGATCCGGGAAAACCTCTT+TGG | - | chr8.1:28153139-28153158 | MS.gene44940:CDS | 50.0% | |
TGGCTGCTCTCATTGACATG+TGG | - | chr8.1:28154525-28154544 | MS.gene44940:CDS | 50.0% | |
TTGATTGAAGGGGCTGCTCT+TGG | - | chr8.1:28152612-28152631 | MS.gene44940:CDS | 50.0% | |
! | AACGTGAGTTGTCACTTCCC+TGG | + | chr8.1:28154776-28154795 | None:intergenic | 50.0% |
! | CCAATCGATTCAAGTGCCAG+TGG | + | chr8.1:28154305-28154324 | None:intergenic | 50.0% |
! | CTCCCTAGTGCCAATTTTGG+TGG | - | chr8.1:28153969-28153988 | MS.gene44940:CDS | 50.0% |
! | GGTAGGAGGGTTGATTGAAG+GGG | - | chr8.1:28152602-28152621 | MS.gene44940:CDS | 50.0% |
! | TGCGGGCAATGGCATTTTGT+TGG | + | chr8.1:28154939-28154958 | None:intergenic | 50.0% |
!! | AAGGAGTGCTTCATGGACCT+TGG | - | chr8.1:28154473-28154492 | MS.gene44940:CDS | 50.0% |
!! | CATGTGTTAACTGGCTTGGC+TGG | - | chr8.1:28153119-28153138 | MS.gene44940:CDS | 50.0% |
!! | TTAACTGGCTTGGCTGGATC+CGG | - | chr8.1:28153125-28153144 | MS.gene44940:CDS | 50.0% |
CACACTCCAAGGTTCCAAGC+CGG | + | chr8.1:28153922-28153941 | None:intergenic | 55.0% | |
CTTGGAGTGTGCTCCTCTCA+AGG | - | chr8.1:28153931-28153950 | MS.gene44940:CDS | 55.0% | |
TGTGCTCCTCTCAAGGTCTC+AGG | - | chr8.1:28153938-28153957 | MS.gene44940:CDS | 55.0% | |
! | CGTCGCCAAAGAGGTTTTCC+CGG | + | chr8.1:28153147-28153166 | None:intergenic | 55.0% |
! | CTTGAGAGGAGCACACTCCA+AGG | + | chr8.1:28153933-28153952 | None:intergenic | 55.0% |
!! | ACAAAGCCGGCTTGGAACCT+TGG | - | chr8.1:28153913-28153932 | MS.gene44940:CDS | 55.0% |
!! | TAACTGGCTTGGCTGGATCC+GGG | - | chr8.1:28153126-28153145 | MS.gene44940:CDS | 55.0% |
GGGTTGCTGGGGTTCTCCAC+TGG | - | chr8.1:28154286-28154305 | MS.gene44940:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 28152600 | 28154981 | 28152600 | ID=MS.gene44940 |
chr8.1 | mRNA | 28152600 | 28154981 | 28152600 | ID=MS.gene44940.t1;Parent=MS.gene44940 |
chr8.1 | exon | 28154387 | 28154981 | 28154387 | ID=MS.gene44940.t1.exon1;Parent=MS.gene44940.t1 |
chr8.1 | CDS | 28154387 | 28154981 | 28154387 | ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1 |
chr8.1 | exon | 28153886 | 28154118 | 28153886 | ID=MS.gene44940.t1.exon2;Parent=MS.gene44940.t1 |
chr8.1 | CDS | 28153886 | 28154118 | 28153886 | ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1 |
chr8.1 | exon | 28153706 | 28153807 | 28153706 | ID=MS.gene44940.t1.exon3;Parent=MS.gene44940.t1 |
chr8.1 | CDS | 28153706 | 28153807 | 28153706 | ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1 |
chr8.1 | exon | 28152939 | 28153303 | 28152939 | ID=MS.gene44940.t1.exon4;Parent=MS.gene44940.t1 |
chr8.1 | CDS | 28152939 | 28153303 | 28152939 | ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1 |
chr8.1 | exon | 28152600 | 28152804 | 28152600 | ID=MS.gene44940.t1.exon5;Parent=MS.gene44940.t1 |
chr8.1 | CDS | 28152600 | 28152804 | 28152600 | ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1 |
Gene Sequence |
Protein sequence |