AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44940.t1 MTR_8g079550 77.992 518 92 3 1 496 1 518 0.0 811
MS.gene44940.t1 MTR_8g079520 63.774 530 157 5 1 498 1 527 0.0 653
MS.gene44940.t1 MTR_5g018060 39.227 543 264 14 9 499 4 532 8.52e-103 327
MS.gene44940.t1 MTR_5g018210 37.523 549 282 14 2 499 1 539 6.61e-101 322
MS.gene44940.t1 MTR_5g018120 36.803 538 280 13 6 498 5 527 5.72e-94 303
MS.gene44940.t1 MTR_0391s0020 37.182 511 267 12 9 479 8 504 8.55e-86 281
MS.gene44940.t1 MTR_8g079280 42.787 409 190 8 124 495 59 460 2.02e-85 279
MS.gene44940.t1 MTR_8g079450 41.969 386 189 7 138 495 135 513 7.21e-83 273
MS.gene44940.t1 MTR_8g079400 36.434 516 264 11 10 497 10 489 1.96e-82 271
MS.gene44940.t1 MTR_8g079400 36.434 516 264 11 10 497 20 499 3.42e-82 271
MS.gene44940.t1 MTR_8g079360 36.000 525 267 12 15 497 16 513 9.34e-82 270
MS.gene44940.t1 MTR_8g479430 36.081 546 287 13 4 498 2 536 2.85e-79 264
MS.gene44940.t1 MTR_8g479450 34.664 551 288 14 9 498 4 543 1.11e-78 262
MS.gene44940.t1 MTR_8g079350 44.377 329 150 5 140 442 98 419 1.60e-75 244
MS.gene44940.t1 MTR_5g018070 41.265 332 158 7 199 499 129 454 1.33e-71 242
MS.gene44940.t1 MTR_5g018160 37.340 391 190 11 123 480 11 379 1.12e-65 218
MS.gene44940.t1 MTR_5g018910 32.617 512 242 14 5 432 4 496 3.46e-62 214
MS.gene44940.t1 MTR_1g021100 31.783 387 213 15 147 499 181 550 3.97e-39 152
MS.gene44940.t1 MTR_8g079380 45.399 163 86 3 337 497 115 276 8.74e-38 146
MS.gene44940.t1 MTR_1g021110 28.612 353 199 12 184 499 213 549 2.63e-28 119
MS.gene44940.t1 MTR_5g018190 28.873 284 170 7 5 266 4 277 2.96e-24 105
MS.gene44940.t1 MTR_5g018110 29.352 293 193 6 17 301 16 302 7.91e-23 101
MS.gene44940.t1 MTR_7g024980 39.175 97 57 2 402 497 8 103 1.86e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44940.t1 AT5G66910 30.364 550 309 14 4 498 8 538 8.55e-54 194
MS.gene44940.t1 AT5G66900 29.197 548 308 15 8 499 58 581 3.93e-49 178
MS.gene44940.t1 AT5G66900 29.068 547 308 15 8 498 10 532 1.67e-47 176
MS.gene44940.t1 AT5G66900 29.174 545 306 15 8 496 58 578 3.13e-47 176
MS.gene44940.t1 AT4G33300 26.325 547 330 16 12 499 9 541 5.40e-40 154
MS.gene44940.t1 AT4G33300 26.325 547 330 16 12 499 9 541 5.40e-40 154
MS.gene44940.t1 AT1G33560 27.844 334 220 10 176 499 191 513 6.52e-31 127
MS.gene44940.t1 AT5G47280 28.116 345 217 9 176 499 14 348 1.68e-30 125
MS.gene44940.t1 AT5G04720 27.532 385 222 11 147 499 177 536 2.83e-30 125
MS.gene44940.t1 AT5G66630 27.245 323 213 6 2 307 6 323 2.53e-23 104
MS.gene44940.t1 AT5G66890 31.818 132 76 6 373 498 14 137 6.86e-12 67.8

Find 119 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGTTTGCTCAACAAAAT+TGG 0.165600 8.1:-28153959 MS.gene44940:CDS
TTGTTTGGACTAGGAAAATT+TGG 0.173754 8.1:-28154109 MS.gene44940:intron
AATTCCAAGCTTTGGATATC+TGG 0.234644 8.1:+28154888 None:intergenic
AACCATTTGAACTAAGAAAA+AGG 0.273976 8.1:-28152687 MS.gene44940:CDS
TGCACGATGTTCTTCAAATC+TGG 0.276271 8.1:+28154052 None:intergenic
CTAGACGACGACGACATAAA+AGG 0.298710 8.1:-28152996 MS.gene44940:CDS
TGCAGATAGCAAAGGGTTGC+TGG 0.319928 8.1:-28153286 MS.gene44940:intron
GATGTTTGCTCAACAAAATT+GGG 0.330931 8.1:-28153958 MS.gene44940:CDS
TGTTTGGACTAGGAAAATTT+GGG 0.345804 8.1:-28154108 MS.gene44940:intron
GATCCTATGGTTCCATCATT+TGG 0.345907 8.1:+28153737 None:intergenic
TTGATTGAAGGGGCTGCTCT+TGG 0.348904 8.1:-28154947 MS.gene44940:CDS
ATCCTTTGTTAATGCCTTCA+AGG 0.350498 8.1:-28153885 MS.gene44940:intron
TTAACTGGCTTGGCTGGATC+CGG 0.379055 8.1:-28154434 MS.gene44940:CDS
TCGACGTCAATGAAAATAGT+TGG 0.379643 8.1:-28152657 MS.gene44940:CDS
GTTTAATAGTTTCGTTTCTT+CGG 0.382650 8.1:+28154811 None:intergenic
CCTTGTTAACGCAATTATCA+TGG 0.391490 8.1:-28154618 MS.gene44940:CDS
GACTCTGTACATGTGTTAAC+TGG 0.395071 8.1:-28154449 MS.gene44940:CDS
CATGTGTTAACTGGCTTGGC+TGG 0.403135 8.1:-28154440 MS.gene44940:CDS
TAAGCTAACCAACCGGCATT+TGG 0.405432 8.1:-28152958 MS.gene44940:CDS
CTTTGGCGACGTTGCTATGT+TGG 0.410021 8.1:-28154403 MS.gene44940:CDS
CAAGATCTACTAGATATTTG+AGG 0.410544 8.1:+28154846 None:intergenic
AGTTTCGTTTCTTCGGCAAC+TGG 0.412207 8.1:+28154818 None:intergenic
CATCATCAAGGAGTGCTTCA+TGG 0.412535 8.1:-28153093 MS.gene44940:CDS
GGGTTGCTGGGGTTCTCCAC+TGG 0.412916 8.1:-28153273 MS.gene44940:CDS
TGGATCCGGGAAAACCTCTT+TGG 0.416588 8.1:-28154420 MS.gene44940:CDS
TTTGGCGACGTTGCTATGTT+GGG 0.423380 8.1:-28154402 MS.gene44940:CDS
TACTCAACATGACCTTCTTA+AGG 0.424366 8.1:-28152737 MS.gene44940:CDS
TGGTTAAGCTTGTAGTTTCA+AGG 0.430293 8.1:-28152938 MS.gene44940:intron
GTATAGAATGGAAGATATGC+AGG 0.431393 8.1:-28154573 MS.gene44940:CDS
CGACGTCAATGAAAATAGTT+GGG 0.431626 8.1:-28152656 MS.gene44940:CDS
CTATGGGAGAGAAAATTTCT+AGG 0.435829 8.1:-28154649 MS.gene44940:CDS
ATGGTAGGAGGGTTGATTGA+AGG 0.440809 8.1:-28154959 MS.gene44940:CDS
CGCTGTTCATCAAGCTAGAC+AGG 0.455959 8.1:-28152710 MS.gene44940:CDS
CTCTGCGTGAGTTGAAGAAA+TGG 0.456262 8.1:-28154496 MS.gene44940:CDS
CCAAGGAGAACTTCATGCTA+TGG 0.456268 8.1:-28154666 MS.gene44940:CDS
GTAAAACCTGATTTCACTGT+TGG 0.463801 8.1:-28154530 MS.gene44940:CDS
TAACAAAGGATTCTGAGTCT+TGG 0.464330 8.1:+28153897 None:intergenic
TGTTGGGATGACAAAGTGAT+AGG 0.470897 8.1:-28154386 MS.gene44940:intron
TAAAGAGATATTGTATAGAA+TGG 0.471779 8.1:-28154585 MS.gene44940:CDS
ATATGGAAGTTGAACCTTGA+AGG 0.472224 8.1:+28153871 None:intergenic
CAAACATTGTTTAAACATTG+TGG 0.473505 8.1:-28154031 MS.gene44940:CDS
ACCTGATTTCACTGTTGGGT+TGG 0.474969 8.1:-28154525 MS.gene44940:CDS
TGGTAGGAGGGTTGATTGAA+GGG 0.476144 8.1:-28154958 MS.gene44940:CDS
GCAGATAGCAAAGGGTTGCT+GGG 0.476918 8.1:-28153285 MS.gene44940:intron
TGCTGTACATCATCTTCATC+AGG 0.479579 8.1:+28153707 None:intergenic
TCGATTGGTGGATCACTCAA+TGG 0.481414 8.1:-28153242 MS.gene44940:CDS
CCATGATAATTGCGTTAACA+AGG 0.482184 8.1:+28154618 None:intergenic
ATCAGGAACGTAAGATCCTA+TGG 0.483010 8.1:+28153724 None:intergenic
TATTGAGGCGTGGAAAGAAA+TGG 0.487029 8.1:-28153213 MS.gene44940:CDS
TCCAACCCAACAGTGAAATC+AGG 0.487100 8.1:+28154524 None:intergenic
TGTACATGTGTTAACTGGCT+TGG 0.492399 8.1:-28154444 MS.gene44940:CDS
TTGGATATCTGGTTTGTGAA+TGG 0.492712 8.1:+28154899 None:intergenic
TAAAACCTGATTTCACTGTT+GGG 0.492772 8.1:-28154529 MS.gene44940:CDS
TAAGAAGGTCATGTTGAGTA+AGG 0.493602 8.1:+28152740 None:intergenic
CCGCATCATCATGGTCTACA+AGG 0.493706 8.1:+28153993 None:intergenic
AAACTTCTGCCAGGGGACAT+TGG 0.497285 8.1:+28154706 None:intergenic
CACTCATTTGCAGATAGCAA+AGG 0.497903 8.1:-28153294 MS.gene44940:intron
GGTCATGTTGAGTAAGGAAA+TGG 0.498599 8.1:+28152746 None:intergenic
AATTGCGTTAACAAGGGTAA+TGG 0.500316 8.1:+28154625 None:intergenic
AAGGAGTGCTTCATGGACCT+TGG 0.503936 8.1:-28153086 MS.gene44940:CDS
CTTCATCCAGATATGGTAGG+AGG 0.505158 8.1:-28154971 None:intergenic
CACTTTGCACTACCAAATGA+TGG 0.505886 8.1:-28153749 MS.gene44940:CDS
GGAAATGGTGGTTGTAGTAA+TGG 0.509015 8.1:+28152761 None:intergenic
TTATCTAGAACCAACATCAA+TGG 0.513284 8.1:+28153926 None:intergenic
TCATCATGGTCTACAAGGTA+AGG 0.515210 8.1:+28153998 None:intergenic
TGATGAAGATGATGTACAGC+AGG 0.517213 8.1:-28153705 MS.gene44940:intron
CAAACCAGATATCCAAAGCT+TGG 0.520100 8.1:-28154892 MS.gene44940:CDS
CGATTGGTGGATCACTCAAT+GGG 0.523708 8.1:-28153241 MS.gene44940:CDS
CCATAGCATGAAGTTCTCCT+TGG 0.529083 8.1:+28154666 None:intergenic
ACTCATTTGCAGATAGCAAA+GGG 0.530445 8.1:-28153293 MS.gene44940:intron
GGGAAGTTGTCCATTGATGT+TGG 0.534475 8.1:-28153936 MS.gene44940:CDS
ACTCAATGGGCAACATATTG+AGG 0.534760 8.1:-28153228 MS.gene44940:CDS
CCACTGGCACTTGAATCGAT+TGG 0.537369 8.1:-28153257 MS.gene44940:CDS
TATTGACAATGTGCGGGCAA+TGG 0.540606 8.1:+28152612 None:intergenic
ATTGCATCTTCATCTCTAAG+TGG 0.542867 8.1:+28153785 None:intergenic
CTTGTTAACGCAATTATCAT+GGG 0.543970 8.1:-28154617 MS.gene44940:CDS
TAACTGGCTTGGCTGGATCC+GGG 0.550730 8.1:-28154433 MS.gene44940:CDS
CTAATAGATGAACTGAAACA+AGG 0.551030 8.1:-28154752 MS.gene44940:CDS
CAAGGAGAACTTCATGCTAT+GGG 0.552718 8.1:-28154665 MS.gene44940:CDS
AAATATATTGTTCATTCCTG+TGG 0.555039 8.1:-28154083 MS.gene44940:CDS
TTGTTCATAAGCTAACCAAC+CGG 0.556409 8.1:-28152965 MS.gene44940:CDS
GAACAGCGATCTCCTTAAGA+AGG 0.557821 8.1:+28152725 None:intergenic
TTCATCCAGATATGGTAGGA+GGG 0.559072 8.1:-28154970 None:intergenic
CGCACATTGTCAATATACTC+TGG 0.562780 8.1:-28152604 MS.gene44940:CDS
TTAACGCAATTATCATGGGA+AGG 0.564589 8.1:-28154613 MS.gene44940:CDS
TAATAGATGAACTGAAACAA+GGG 0.567667 8.1:-28154751 MS.gene44940:CDS
AACCTTGAAGGCATTAACAA+AGG 0.568854 8.1:+28153883 None:intergenic
ATGGTGAACATGTTGTCAAA+AGG 0.571571 8.1:-28153194 MS.gene44940:CDS
CTGGCACTTGAATCGATTGG+TGG 0.571887 8.1:-28153254 MS.gene44940:CDS
ATGTTTGCTCAACAAAATTG+GGG 0.572176 8.1:-28153957 MS.gene44940:CDS
CAGAGTATATTGACAATGTG+CGG 0.573948 8.1:+28152605 None:intergenic
AGTTCTTAACCGCATCATCA+TGG 0.576250 8.1:+28153984 None:intergenic
CTACCAAATGATGGAACCAT+AGG 0.578894 8.1:-28153740 MS.gene44940:CDS
AGAGTATATTGACAATGTGC+GGG 0.580505 8.1:+28152606 None:intergenic
TAACGCAATTATCATGGGAA+GGG 0.582817 8.1:-28154612 MS.gene44940:CDS
TCTGCGTGAGTTGAAGAAAT+GGG 0.584537 8.1:-28154495 MS.gene44940:CDS
GCAAGATAATCACATCATCA+AGG 0.586026 8.1:-28153105 MS.gene44940:CDS
ACATAGCAACGTCGCCAAAG+AGG 0.596462 8.1:+28154406 None:intergenic
CAGATAGCAAAGGGTTGCTG+GGG 0.596881 8.1:-28153284 MS.gene44940:CDS
TGGCTGCTCTCATTGACATG+TGG 0.597866 8.1:-28153034 MS.gene44940:CDS
TTTCTTCATCCAGATATGGT+AGG 0.601324 8.1:-28154974 None:intergenic
TTTCTTCTATCTATTTACCA+AGG 0.602292 8.1:-28154683 MS.gene44940:CDS
ACAAATACTCCAATGTCCCC+TGG 0.604530 8.1:-28154715 MS.gene44940:CDS
GTTTGGACTAGGAAAATTTG+GGG 0.607558 8.1:-28154107 MS.gene44940:intron
CTACAAGCTTAACCAAATGC+CGG 0.609703 8.1:+28152946 None:intergenic
CATGATAATTGCGTTAACAA+GGG 0.611910 8.1:+28154619 None:intergenic
AAGCTTAACCAAATGCCGGT+TGG 0.615174 8.1:+28152950 None:intergenic
TATAGAATGGAAGATATGCA+GGG 0.619726 8.1:-28154572 MS.gene44940:CDS
GGTAGGAGGGTTGATTGAAG+GGG 0.625936 8.1:-28154957 MS.gene44940:CDS
CCTTGTAGACCATGATGATG+CGG 0.629365 8.1:-28153993 MS.gene44940:CDS
ATGTCAATGAGAGCAGCCAC+AGG 0.629975 8.1:+28153038 None:intergenic
CATGTTGAGTAAGGAAATGG+TGG 0.646683 8.1:+28152749 None:intergenic
CCAATCGATTCAAGTGCCAG+TGG 0.651125 8.1:+28153257 None:intergenic
CATTTCTTCAACTCACGCAG+AGG 0.651801 8.1:+28154497 None:intergenic
CATTTGGTAGTGCAAAGTGA+CGG 0.652667 8.1:+28153753 None:intergenic
ATGGGCAACATATTGAGGCG+TGG 0.653138 8.1:-28153223 MS.gene44940:CDS
GTGAACATGTTGTCAAAAGG+TGG 0.680176 8.1:-28153191 MS.gene44940:CDS
TGTTTGCTCAACAAAATTGG+GGG 0.683848 8.1:-28153956 MS.gene44940:CDS
ATAGAATGGAAGATATGCAG+GGG 0.703826 8.1:-28154571 MS.gene44940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAATAAGTAATTTTCA+TGG - chr8.1:28154089-28154108 MS.gene44940:CDS 10.0%
!!! AATCTAGAGAATATATTTTA+GGG - chr8.1:28154708-28154727 MS.gene44940:CDS 15.0%
!!! GTTATCAGAATTTTATAATA+TGG + chr8.1:28153708-28153727 None:intergenic 15.0%
!!! TAATCTAGAGAATATATTTT+AGG - chr8.1:28154707-28154726 MS.gene44940:CDS 15.0%
!!! TATATAATAAAAGAAAGTGT+TGG - chr8.1:28154178-28154197 MS.gene44940:intron 15.0%
!! TAAAGAGATATTGTATAGAA+TGG - chr8.1:28152974-28152993 MS.gene44940:CDS 20.0%
!! TAATGATGAAATACAAAAGA+GGG + chr8.1:28154072-28154091 None:intergenic 20.0%
!! TTAATGATGAAATACAAAAG+AGG + chr8.1:28154073-28154092 None:intergenic 20.0%
!!! TTAAGATATTGACTATTACT+AGG + chr8.1:28153894-28153913 None:intergenic 20.0%
! AAATATATTGTTCATTCCTG+TGG - chr8.1:28153476-28153495 MS.gene44940:intron 25.0%
! AACCATTTGAACTAAGAAAA+AGG - chr8.1:28154872-28154891 MS.gene44940:CDS 25.0%
! ATAACATTTGATCATTAACC+AGG - chr8.1:28154755-28154774 MS.gene44940:CDS 25.0%
! ATGAATTTGACAAAATCTGA+TGG + chr8.1:28154130-28154149 None:intergenic 25.0%
! CAAACATTGTTTAAACATTG+TGG - chr8.1:28153528-28153547 MS.gene44940:intron 25.0%
! GTTTAATAGTTTCGTTTCTT+CGG + chr8.1:28152751-28152770 None:intergenic 25.0%
! TAACATTTGATCATTAACCA+GGG - chr8.1:28154756-28154775 MS.gene44940:CDS 25.0%
! TAATAGATGAACTGAAACAA+GGG - chr8.1:28152808-28152827 MS.gene44940:intron 25.0%
! TGAATTTGACAAAATCTGAT+GGG + chr8.1:28154129-28154148 None:intergenic 25.0%
! TGTCTTCAAAAAATAATCCA+AGG + chr8.1:28154493-28154512 None:intergenic 25.0%
! TTTCTTCTATCTATTTACCA+AGG - chr8.1:28152876-28152895 MS.gene44940:intron 25.0%
!! AACCTTTTTCTTAGTTCAAA+TGG + chr8.1:28154877-28154896 None:intergenic 25.0%
!! AAGAATCTTGTTTGTTTGTT+TGG - chr8.1:28153435-28153454 MS.gene44940:intron 25.0%
!!! ATAATAAAAGAAAGTGTTGG+TGG - chr8.1:28154181-28154200 MS.gene44940:intron 25.0%
AGATGTTTGCTCAACAAAAT+TGG - chr8.1:28153600-28153619 MS.gene44940:intron 30.0%
AGTCAATATCTTAACAAAGC+CGG - chr8.1:28153900-28153919 MS.gene44940:CDS 30.0%
ATGTTTGCTCAACAAAATTG+GGG - chr8.1:28153602-28153621 MS.gene44940:intron 30.0%
CAAGATCTACTAGATATTTG+AGG + chr8.1:28152716-28152735 None:intergenic 30.0%
CATGATAATTGCGTTAACAA+GGG + chr8.1:28152943-28152962 None:intergenic 30.0%
CTAATAGATGAACTGAAACA+AGG - chr8.1:28152807-28152826 MS.gene44940:intron 30.0%
CTTGTTAACGCAATTATCAT+GGG - chr8.1:28152942-28152961 MS.gene44940:CDS 30.0%
GATGTTTGCTCAACAAAATT+GGG - chr8.1:28153601-28153620 MS.gene44940:intron 30.0%
TAAAACCTGATTTCACTGTT+GGG - chr8.1:28153030-28153049 MS.gene44940:CDS 30.0%
TATAGAATGGAAGATATGCA+GGG - chr8.1:28152987-28153006 MS.gene44940:CDS 30.0%
TGAAGACAAAAAAATACCTG+TGG - chr8.1:28154505-28154524 MS.gene44940:CDS 30.0%
! TGTTTGGACTAGGAAAATTT+GGG - chr8.1:28153451-28153470 MS.gene44940:intron 30.0%
! TTATCTAGAACCAACATCAA+TGG + chr8.1:28153636-28153655 None:intergenic 30.0%
! TTGTTTGGACTAGGAAAATT+TGG - chr8.1:28153450-28153469 MS.gene44940:intron 30.0%
!! AACGTTTTCTGTTTCTTGAT+CGG + chr8.1:28154688-28154707 None:intergenic 30.0%
!! AATAATGAAGTTCTAAACCG+TGG + chr8.1:28153747-28153766 None:intergenic 30.0%
AATTGCGTTAACAAGGGTAA+TGG + chr8.1:28152937-28152956 None:intergenic 35.0%
ACCTTATGAATGAAGTCAGT+TGG + chr8.1:28153311-28153330 None:intergenic 35.0%
ACTCATTTGCAGATAGCAAA+GGG - chr8.1:28154266-28154285 MS.gene44940:intron 35.0%
AGAAGAAAAAACTTCTGCCA+GGG + chr8.1:28152864-28152883 None:intergenic 35.0%
AGAGTATATTGACAATGTGC+GGG + chr8.1:28154956-28154975 None:intergenic 35.0%
ATAGAATGGAAGATATGCAG+GGG - chr8.1:28152988-28153007 MS.gene44940:CDS 35.0%
ATATGGAAGTTGAACCTTGA+AGG + chr8.1:28153691-28153710 None:intergenic 35.0%
ATCCTTTGTTAATGCCTTCA+AGG - chr8.1:28153674-28153693 MS.gene44940:intron 35.0%
ATGGTGAACATGTTGTCAAA+AGG - chr8.1:28154365-28154384 MS.gene44940:intron 35.0%
ATTGCATCTTCATCTCTAAG+TGG + chr8.1:28153777-28153796 None:intergenic 35.0%
CAAAGTTGCAGAAATTGTTG+TGG - chr8.1:28153338-28153357 MS.gene44940:intron 35.0%
CAAATGAGTGCAAGCAAATT+AGG + chr8.1:28154255-28154274 None:intergenic 35.0%
CAGAGTATATTGACAATGTG+CGG + chr8.1:28154957-28154976 None:intergenic 35.0%
CCATGATAATTGCGTTAACA+AGG + chr8.1:28152944-28152963 None:intergenic 35.0%
CCTTGTTAACGCAATTATCA+TGG - chr8.1:28152941-28152960 MS.gene44940:CDS 35.0%
CGACGTCAATGAAAATAGTT+GGG - chr8.1:28154903-28154922 MS.gene44940:CDS 35.0%
CTATGGGAGAGAAAATTTCT+AGG - chr8.1:28152910-28152929 MS.gene44940:intron 35.0%
CTTGTTTGTTTGTTTGGACT+AGG - chr8.1:28153441-28153460 MS.gene44940:intron 35.0%
GCAAGATAATCACATCATCA+AGG - chr8.1:28154454-28154473 MS.gene44940:CDS 35.0%
GTAAAACCTGATTTCACTGT+TGG - chr8.1:28153029-28153048 MS.gene44940:CDS 35.0%
GTATAGAATGGAAGATATGC+AGG - chr8.1:28152986-28153005 MS.gene44940:CDS 35.0%
TAACAAAGGATTCTGAGTCT+TGG + chr8.1:28153665-28153684 None:intergenic 35.0%
TAACGCAATTATCATGGGAA+GGG - chr8.1:28152947-28152966 MS.gene44940:CDS 35.0%
TAAGAAGGTCATGTTGAGTA+AGG + chr8.1:28154822-28154841 None:intergenic 35.0%
TACTCAACATGACCTTCTTA+AGG - chr8.1:28154822-28154841 MS.gene44940:CDS 35.0%
TAGAAGAAAAAACTTCTGCC+AGG + chr8.1:28152865-28152884 None:intergenic 35.0%
TCGACGTCAATGAAAATAGT+TGG - chr8.1:28154902-28154921 MS.gene44940:CDS 35.0%
TGGTTAAGCTTGTAGTTTCA+AGG - chr8.1:28154621-28154640 MS.gene44940:CDS 35.0%
TGTTTGCTCAACAAAATTGG+GGG - chr8.1:28153603-28153622 MS.gene44940:intron 35.0%
TTAACGCAATTATCATGGGA+AGG - chr8.1:28152946-28152965 MS.gene44940:CDS 35.0%
TTGTTCATAAGCTAACCAAC+CGG - chr8.1:28154594-28154613 MS.gene44940:CDS 35.0%
! ACAGTGAAATCAGGTTTTAC+AGG + chr8.1:28153029-28153048 None:intergenic 35.0%
! GTTTGGACTAGGAAAATTTG+GGG - chr8.1:28153452-28153471 MS.gene44940:intron 35.0%
! TGATCGCTTGCAAAAAGTTT+TGG - chr8.1:28154421-28154440 MS.gene44940:CDS 35.0%
! TTGGATATCTGGTTTGTGAA+TGG + chr8.1:28152663-28152682 None:intergenic 35.0%
!! AACCTTGAAGGCATTAACAA+AGG + chr8.1:28153679-28153698 None:intergenic 35.0%
!! AATTCCAAGCTTTGGATATC+TGG + chr8.1:28152674-28152693 None:intergenic 35.0%
!! ATATTTGAGGTTTTCACGAG+TGG + chr8.1:28152703-28152722 None:intergenic 35.0%
!! CTTCTAGAGTTAAGTTTCCA+CGG - chr8.1:28153727-28153746 MS.gene44940:CDS 35.0%
!!! AAATCTGGATTTTTTGCCAC+AGG + chr8.1:28153495-28153514 None:intergenic 35.0%
!!! GGTTTTGAAATTCCAAGCTT+TGG + chr8.1:28152682-28152701 None:intergenic 35.0%
ACTCAATGGGCAACATATTG+AGG - chr8.1:28154331-28154350 MS.gene44940:intron 40.0%
AGTTCTTAACCGCATCATCA+TGG + chr8.1:28153578-28153597 None:intergenic 40.0%
ATATCTTAACAAAGCCGGCT+TGG - chr8.1:28153905-28153924 MS.gene44940:CDS 40.0%
ATCAGGAACGTAAGATCCTA+TGG + chr8.1:28153838-28153857 None:intergenic 40.0%
CAAACCAGATATCCAAAGCT+TGG - chr8.1:28152667-28152686 MS.gene44940:CDS 40.0%
CAAGGAGAACTTCATGCTAT+GGG - chr8.1:28152894-28152913 MS.gene44940:intron 40.0%
CACTCATTTGCAGATAGCAA+AGG - chr8.1:28154265-28154284 MS.gene44940:intron 40.0%
CACTTTGCACTACCAAATGA+TGG - chr8.1:28153810-28153829 MS.gene44940:intron 40.0%
CAGTTGGCGAGTTAGTTAAA+AGG + chr8.1:28153295-28153314 None:intergenic 40.0%
CATGTTGAGTAAGGAAATGG+TGG + chr8.1:28154813-28154832 None:intergenic 40.0%
CGCACATTGTCAATATACTC+TGG - chr8.1:28154955-28154974 MS.gene44940:CDS 40.0%
CTACAAGCTTAACCAAATGC+CGG + chr8.1:28154616-28154635 None:intergenic 40.0%
GAAGAAAAAACTTCTGCCAG+GGG + chr8.1:28152863-28152882 None:intergenic 40.0%
GACTCTGTACATGTGTTAAC+TGG - chr8.1:28153110-28153129 MS.gene44940:CDS 40.0%
GATCCTATGGTTCCATCATT+TGG + chr8.1:28153825-28153844 None:intergenic 40.0%
GGAAATGGTGGTTGTAGTAA+TGG + chr8.1:28154801-28154820 None:intergenic 40.0%
GGTCATGTTGAGTAAGGAAA+TGG + chr8.1:28154816-28154835 None:intergenic 40.0%
GTGAACATGTTGTCAAAAGG+TGG - chr8.1:28154368-28154387 MS.gene44940:intron 40.0%
TATTGAGGCGTGGAAAGAAA+TGG - chr8.1:28154346-28154365 MS.gene44940:intron 40.0%
TCATCATGGTCTACAAGGTA+AGG + chr8.1:28153564-28153583 None:intergenic 40.0%
TGATGAAGATGATGTACAGC+AGG - chr8.1:28153854-28153873 MS.gene44940:intron 40.0%
TGCACGATGTTCTTCAAATC+TGG + chr8.1:28153510-28153529 None:intergenic 40.0%
TGCTGTACATCATCTTCATC+AGG + chr8.1:28153855-28153874 None:intergenic 40.0%
TGTACATGTGTTAACTGGCT+TGG - chr8.1:28153115-28153134 MS.gene44940:CDS 40.0%
TGTTGGGATGACAAAGTGAT+AGG - chr8.1:28153173-28153192 MS.gene44940:CDS 40.0%
! AGCAAATTAGGTTAGCTACG+AGG + chr8.1:28154243-28154262 None:intergenic 40.0%
! ATTCTCCCTAGTGCCAATTT+TGG - chr8.1:28153966-28153985 MS.gene44940:CDS 40.0%
! CTACCAAATGATGGAACCAT+AGG - chr8.1:28153819-28153838 MS.gene44940:intron 40.0%
! GCCAACTGACTTCATTCATA+AGG - chr8.1:28153307-28153326 MS.gene44940:intron 40.0%
! TACAAAAGAGGGTGTAACTC+TGG + chr8.1:28154061-28154080 None:intergenic 40.0%
! TCTGCGTGAGTTGAAGAAAT+GGG - chr8.1:28153064-28153083 MS.gene44940:CDS 40.0%
!! CATTTGGTAGTGCAAAGTGA+CGG + chr8.1:28153809-28153828 None:intergenic 40.0%
!!! TGGCATTTTGTTGGTTCTGT+TGG + chr8.1:28154930-28154949 None:intergenic 40.0%
AAGCTTAACCAAATGCCGGT+TGG + chr8.1:28154612-28154631 None:intergenic 45.0%
ACAAATACTCCAATGTCCCC+TGG - chr8.1:28152844-28152863 MS.gene44940:intron 45.0%
ACCTGATTTCACTGTTGGGT+TGG - chr8.1:28153034-28153053 MS.gene44940:CDS 45.0%
AGTCCACCAAAATTGGCACT+AGG + chr8.1:28153975-28153994 None:intergenic 45.0%
AGTTTCGTTTCTTCGGCAAC+TGG + chr8.1:28152744-28152763 None:intergenic 45.0%
CATTTCTTCAACTCACGCAG+AGG + chr8.1:28153065-28153084 None:intergenic 45.0%
CCAAGGAGAACTTCATGCTA+TGG - chr8.1:28152893-28152912 MS.gene44940:intron 45.0%
CCATAGCATGAAGTTCTCCT+TGG + chr8.1:28152896-28152915 None:intergenic 45.0%
CTAGACGACGACGACATAAA+AGG - chr8.1:28154563-28154582 MS.gene44940:CDS 45.0%
GAACAGCGATCTCCTTAAGA+AGG + chr8.1:28154837-28154856 None:intergenic 45.0%
GGGAAGTTGTCCATTGATGT+TGG - chr8.1:28153623-28153642 MS.gene44940:intron 45.0%
GTCCACCAAAATTGGCACTA+GGG + chr8.1:28153974-28153993 None:intergenic 45.0%
TAAGCTAACCAACCGGCATT+TGG - chr8.1:28154601-28154620 MS.gene44940:CDS 45.0%
TATTGACAATGTGCGGGCAA+TGG + chr8.1:28154950-28154969 None:intergenic 45.0%
TCAAAACCTGAGACCTTGAG+AGG + chr8.1:28153947-28153966 None:intergenic 45.0%
TCCAACCCAACAGTGAAATC+AGG + chr8.1:28153038-28153057 None:intergenic 45.0%
TTTGGCGACGTTGCTATGTT+GGG - chr8.1:28153157-28153176 MS.gene44940:CDS 45.0%
! ATGGTAGGAGGGTTGATTGA+AGG - chr8.1:28152600-28152619 MS.gene44940:CDS 45.0%
! CCAGACTAGTCCACCAAAAT+TGG + chr8.1:28153982-28154001 None:intergenic 45.0%
! CCTTGTAGACCATGATGATG+CGG - chr8.1:28153566-28153585 MS.gene44940:intron 45.0%
! CGATTGGTGGATCACTCAAT+GGG - chr8.1:28154318-28154337 MS.gene44940:intron 45.0%
! CTCTGCGTGAGTTGAAGAAA+TGG - chr8.1:28153063-28153082 MS.gene44940:CDS 45.0%
! CTTTTATGTCGTCGTCGTCT+AGG + chr8.1:28154565-28154584 None:intergenic 45.0%
! TCGATTGGTGGATCACTCAA+TGG - chr8.1:28154317-28154336 MS.gene44940:intron 45.0%
! TGGTAGGAGGGTTGATTGAA+GGG - chr8.1:28152601-28152620 MS.gene44940:CDS 45.0%
!! CATCATCAAGGAGTGCTTCA+TGG - chr8.1:28154466-28154485 MS.gene44940:CDS 45.0%
!!! CCAATTTTGGTGGACTAGTC+TGG - chr8.1:28153979-28153998 MS.gene44940:CDS 45.0%
AAACTTCTGCCAGGGGACAT+TGG + chr8.1:28152856-28152875 None:intergenic 50.0%
ACATAGCAACGTCGCCAAAG+AGG + chr8.1:28153156-28153175 None:intergenic 50.0%
ATGGGCAACATATTGAGGCG+TGG - chr8.1:28154336-28154355 MS.gene44940:intron 50.0%
ATGTCAATGAGAGCAGCCAC+AGG + chr8.1:28154524-28154543 None:intergenic 50.0%
CAGATAGCAAAGGGTTGCTG+GGG - chr8.1:28154275-28154294 MS.gene44940:intron 50.0%
CCACTGGCACTTGAATCGAT+TGG - chr8.1:28154302-28154321 MS.gene44940:intron 50.0%
CCGCATCATCATGGTCTACA+AGG + chr8.1:28153569-28153588 None:intergenic 50.0%
CGCTGTTCATCAAGCTAGAC+AGG - chr8.1:28154849-28154868 MS.gene44940:CDS 50.0%
CTGGCACTTGAATCGATTGG+TGG - chr8.1:28154305-28154324 MS.gene44940:intron 50.0%
CTTTGGCGACGTTGCTATGT+TGG - chr8.1:28153156-28153175 MS.gene44940:CDS 50.0%
GCAGATAGCAAAGGGTTGCT+GGG - chr8.1:28154274-28154293 MS.gene44940:intron 50.0%
TGCAGATAGCAAAGGGTTGC+TGG - chr8.1:28154273-28154292 MS.gene44940:intron 50.0%
TGGATCCGGGAAAACCTCTT+TGG - chr8.1:28153139-28153158 MS.gene44940:CDS 50.0%
TGGCTGCTCTCATTGACATG+TGG - chr8.1:28154525-28154544 MS.gene44940:CDS 50.0%
TTGATTGAAGGGGCTGCTCT+TGG - chr8.1:28152612-28152631 MS.gene44940:CDS 50.0%
! AACGTGAGTTGTCACTTCCC+TGG + chr8.1:28154776-28154795 None:intergenic 50.0%
! CCAATCGATTCAAGTGCCAG+TGG + chr8.1:28154305-28154324 None:intergenic 50.0%
! CTCCCTAGTGCCAATTTTGG+TGG - chr8.1:28153969-28153988 MS.gene44940:CDS 50.0%
! GGTAGGAGGGTTGATTGAAG+GGG - chr8.1:28152602-28152621 MS.gene44940:CDS 50.0%
! TGCGGGCAATGGCATTTTGT+TGG + chr8.1:28154939-28154958 None:intergenic 50.0%
!! AAGGAGTGCTTCATGGACCT+TGG - chr8.1:28154473-28154492 MS.gene44940:CDS 50.0%
!! CATGTGTTAACTGGCTTGGC+TGG - chr8.1:28153119-28153138 MS.gene44940:CDS 50.0%
!! TTAACTGGCTTGGCTGGATC+CGG - chr8.1:28153125-28153144 MS.gene44940:CDS 50.0%
CACACTCCAAGGTTCCAAGC+CGG + chr8.1:28153922-28153941 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr8.1:28153931-28153950 MS.gene44940:CDS 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr8.1:28153938-28153957 MS.gene44940:CDS 55.0%
! CGTCGCCAAAGAGGTTTTCC+CGG + chr8.1:28153147-28153166 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr8.1:28153933-28153952 None:intergenic 55.0%
!! ACAAAGCCGGCTTGGAACCT+TGG - chr8.1:28153913-28153932 MS.gene44940:CDS 55.0%
!! TAACTGGCTTGGCTGGATCC+GGG - chr8.1:28153126-28153145 MS.gene44940:CDS 55.0%
GGGTTGCTGGGGTTCTCCAC+TGG - chr8.1:28154286-28154305 MS.gene44940:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 28152600 28154981 28152600 ID=MS.gene44940
chr8.1 mRNA 28152600 28154981 28152600 ID=MS.gene44940.t1;Parent=MS.gene44940
chr8.1 exon 28154387 28154981 28154387 ID=MS.gene44940.t1.exon1;Parent=MS.gene44940.t1
chr8.1 CDS 28154387 28154981 28154387 ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1
chr8.1 exon 28153886 28154118 28153886 ID=MS.gene44940.t1.exon2;Parent=MS.gene44940.t1
chr8.1 CDS 28153886 28154118 28153886 ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1
chr8.1 exon 28153706 28153807 28153706 ID=MS.gene44940.t1.exon3;Parent=MS.gene44940.t1
chr8.1 CDS 28153706 28153807 28153706 ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1
chr8.1 exon 28152939 28153303 28152939 ID=MS.gene44940.t1.exon4;Parent=MS.gene44940.t1
chr8.1 CDS 28152939 28153303 28152939 ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1
chr8.1 exon 28152600 28152804 28152600 ID=MS.gene44940.t1.exon5;Parent=MS.gene44940.t1
chr8.1 CDS 28152600 28152804 28152600 ID=cds.MS.gene44940.t1;Parent=MS.gene44940.t1
Gene Sequence

>MS.gene44940

ATGGTAGGAGGGTTGATTGAAGGGGCTGCTCTTGGAGCAGTGTTTCAAGAAGCAGCAAAACCATTCACAAACCAGATATCCAAAGCTTGGAATTTCAAAACCACTCGTGAAAACCTCAAATATCTAGTAGATCTTGTCATGCCAGTTGCCGAAGAAACGAAACTATTAAACGAGAAATCGAATCGTTCAAACGTAGAGATAGATATTCTAATAGATGAACTGAAACAAGGGAGAGAGTTAGTTAACAAATACTCCAATGTCCCCTGGCAGAAGTTTTTTCTTCTATCTATTTACCAAGGAGAACTTCATGCTATGGGAGAGAAAATTTCTAGGTCCATTACCCTTGTTAACGCAATTATCATGGGAAGGGATGTTAAAGAGATATTGTATAGAATGGAAGATATGCAGGGGAGACAATTCAATGCTCCTGTAAAACCTGATTTCACTGTTGGGTTGGATGTGCCTCTGCGTGAGTTGAAGAAATGGGTGCTCAGTAGTGATGTGTCTGTAGACTCTGTACATGTGTTAACTGGCTTGGCTGGATCCGGGAAAACCTCTTTGGCGACGTTGCTATGTTGGGATGACAAAGTGATAGGTAACATATATAACTATTTACGCTTCACTTTTATTACTTGTTTCTACGTATCAGTGTAGTGTCTGATCTTTGTATATGTGTTAGTACTTCATAAATACCTTTTAACTAACTCGCCAACTGACTTCATTCATAAGGTTTTAAATCAAAGTTGCAGAAATTGTTGTGGTCGCATCGCGATATTTGATATTATTGAAAATAGCTGATGTAACTTCAATTGTTGTCGTGAAGACTTTGATATTTAAGAATCTTGTTTGTTTGTTTGGACTAGGAAAATTTGGGGAAAATATATTGTTCATTCCTGTGGCAAAAAATCCAGATTTGAAGAACATCGTGCAAACATTGTTTAAACATTGTGGACATAAAAAGCCTTACCTTGTAGACCATGATGATGCGGTTAAGAACTTGAGATGTTTGCTCAACAAAATTGGGGGAAGTTGTCCATTGATGTTGGTTCTAGATAATGTTTTCCAAGACTCAGAATCCTTTGTTAATGCCTTCAAGGTTCAACTTCCATATTATAAAATTCTGATAACTTCTAGAGTTAAGTTTCCACGGTTTAGAACTTCATTATTCTTAAAGCCACTTAGAGATGAAGATGCAATTATCGTTTTCCGTCACTTTGCACTACCAAATGATGGAACCATAGGATCTTACGTTCCTGATGAAGATGATGTACAGCAGGTTTGTTATATTCATCCTAGTAATAGTCAATATCTTAACAAAGCCGGCTTGGAACCTTGGAGTGTGCTCCTCTCAAGGTCTCAGGTTTTGATTCTCCCTAGTGCCAATTTTGGTGGACTAGTCTGGCTTCTTCAAAAAGTATATATAGTCATAGTCTTAACATTTTTTGTCAAATTTTATAACCAGAGTTACACCCTCTTTTGTATTTCATCATTAATAATAAGTAATTTTCATGGTTTGTTATATTTGTCCCATCAGATTTTGTCAAATTCATCTTGTGTGTATATAATTGTTTTCTCAAATATATAATAAAAGAAAGTGTTGGTGGTTACTAAATTGTAGCAAGACGTCAATATGATCAAGTCCTCGTAGCTAACCTAATTTGCTTGCACTCATTTGCAGATAGCAAAGGGTTGCTGGGGTTCTCCACTGGCACTTGAATCGATTGGTGGATCACTCAATGGGCAACATATTGAGGCGTGGAAAGAAATGGTGAACATGTTGTCAAAAGGTGGTTCTATTGTCGATTCTAATGATGAGTTGCGTGATCGCTTGCAAAAAGTTTTGGAGAATGCATTGCAAGATAATCACATCATCAAGGAGTGCTTCATGGACCTTGGATTATTTTTTGAAGACAAAAAAATACCTGTGGCTGCTCTCATTGACATGTGGACAGAACTGTATGACCTAGACGACGACGACATAAAAGGAATGAACATTGTTCATAAGCTAACCAACCGGCATTTGGTTAAGCTTGTAGTTTCAAGGTACATTAATTAACTATTTATTTTCATTTTATAACAATCATGCCGATCAAGAAACAGAAAACGTTAATCTAGAGAATATATTTTAGGGCTATGTATAGTTATATCTCTGCATATAACATTTGATCATTAACCAGGGAAGTGACAACTCACGTTGACCATTACTACAACCACCATTTCCTTACTCAACATGACCTTCTTAAGGAGATCGCTGTTCATCAAGCTAGACAGGAACCATTTGAACTAAGAAAAAGGTTGATTTTCGACGTCAATGAAAATAGTTGGGACCAACAGAACCAACAAAATGCCATTGCCCGCACATTGTCAATATACTCTGGTTAG

Protein sequence

>MS.gene44940.t1

MVGGLIEGAALGAVFQEAAKPFTNQISKAWNFKTTRENLKYLVDLVMPVAEETKLLNEKSNRSNVEIDILIDELKQGRELVNKYSNVPWQKFFLLSIYQGELHAMGEKISRSITLVNAIIMGRDVKEILYRMEDMQGRQFNAPVKPDFTVGLDVPLRELKKWVLSSDVSVDSVHVLTGLAGSGKTSLATLLCWDDKVIGKFGENILFIPVAKNPDLKNIVQTLFKHCGHKKPYLVDHDDAVKNLRCLLNKIGGSCPLMLVLDNVFQDSESFVNAFKPLRDEDAIIVFRHFALPNDGTIGSYVPDEDDVQQIAKGCWGSPLALESIGGSLNGQHIEAWKEMVNMLSKGGSIVDSNDELRDRLQKVLENALQDNHIIKECFMDLGLFFEDKKIPVAALIDMWTELYDLDDDDIKGMNIVHKLTNRHLVKLVVSREVTTHVDHYYNHHFLTQHDLLKEIAVHQARQEPFELRKRLIFDVNENSWDQQNQQNAIARTLSIYSG