AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054893


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054893.t1 MTR_7g095710 98.207 948 17 0 1 948 115 1062 0.0 1919
MS.gene054893.t1 MTR_6g016470 68.617 940 280 6 1 933 83 1014 0.0 1284
MS.gene054893.t1 MTR_4g008170 57.524 937 380 9 1 929 159 1085 0.0 1022
MS.gene054893.t1 MTR_4g008170 57.082 946 377 11 1 929 159 1092 0.0 1007
MS.gene054893.t1 MTR_2g038310 55.662 936 400 6 1 929 146 1073 0.0 999
MS.gene054893.t1 MTR_2g038310 56.140 855 360 6 1 848 146 992 0.0 902
MS.gene054893.t1 MTR_4g008650 47.436 936 447 15 3 925 108 1011 0.0 823
MS.gene054893.t1 MTR_8g090125 46.878 945 453 15 2 930 63 974 0.0 812
MS.gene054893.t1 MTR_4g096990 48.443 931 444 11 3 925 110 1012 0.0 811
MS.gene054893.t1 MTR_3g103070 47.863 936 447 13 2 925 110 1016 0.0 804
MS.gene054893.t1 MTR_5g015590 47.803 933 449 12 3 925 110 1014 0.0 801
MS.gene054893.t1 MTR_8g013780 67.414 580 176 7 363 938 1 571 0.0 792
MS.gene054893.t1 MTR_0005s0140 45.484 941 464 14 5 928 28 936 0.0 781
MS.gene054893.t1 MTR_4g043690 45.387 943 466 14 3 928 111 1021 0.0 781
MS.gene054893.t1 MTR_3g103070 48.792 869 404 13 69 925 1 840 0.0 761
MS.gene054893.t1 MTR_2g105830 54.762 714 310 9 1 711 148 851 0.0 731
MS.gene054893.t1 MTR_5g015590 47.194 873 417 13 3 859 110 954 0.0 724
MS.gene054893.t1 MTR_8g446010 41.738 932 494 15 9 925 70 967 0.0 671
MS.gene054893.t1 MTR_8g045070 40.880 932 479 15 9 925 70 944 0.0 651
MS.gene054893.t1 MTR_4g008650 46.438 758 365 14 3 751 108 833 0.0 640
MS.gene054893.t1 MTR_5g015590 46.358 755 371 11 3 751 110 836 0.0 605
MS.gene054893.t1 MTR_5g015590 44.921 699 351 11 3 695 110 780 1.64e-172 522
MS.gene054893.t1 MTR_8g013810 71.585 366 101 1 1 363 82 447 4.13e-172 511
MS.gene054893.t1 MTR_5g097270 32.337 937 559 20 2 916 114 997 1.39e-141 449
MS.gene054893.t1 MTR_4g014480 29.989 947 575 20 1 925 69 949 1.19e-116 381
MS.gene054893.t1 MTR_7g100110 31.770 853 455 24 31 789 47 866 7.91e-100 337
MS.gene054893.t1 MTR_8g027160 30.222 857 496 21 31 807 35 869 9.83e-95 320
MS.gene054893.t1 MTR_8g027160 28.902 993 584 29 31 924 35 1004 1.04e-94 323
MS.gene054893.t1 MTR_3g103270 28.455 984 568 26 17 903 41 985 1.21e-94 322
MS.gene054893.t1 MTR_2g105690 63.348 221 76 1 714 929 22 242 4.42e-92 293
MS.gene054893.t1 MTR_8g027160 29.475 743 423 20 31 694 35 755 1.18e-69 247
MS.gene054893.t1 MTR_8g027160 29.341 743 424 20 31 694 35 755 5.91e-69 245
MS.gene054893.t1 MTR_4g116950 25.350 714 419 21 38 737 44 657 1.76e-49 190
MS.gene054893.t1 MTR_7g117500 24.381 767 461 24 31 781 43 706 4.25e-49 189
MS.gene054893.t1 MTR_4g127710 23.810 714 444 19 31 737 39 659 9.89e-47 181
MS.gene054893.t1 MTR_4g127710 23.810 714 444 19 31 737 39 659 1.31e-46 181
MS.gene054893.t1 MTR_3g108800 24.051 711 446 18 31 737 35 655 1.39e-46 181
MS.gene054893.t1 MTR_3g108800 24.051 711 446 18 31 737 36 656 1.39e-46 181
MS.gene054893.t1 MTR_2g449840 23.973 730 438 22 31 745 37 664 1.58e-46 181
MS.gene054893.t1 MTR_7g117500 23.797 769 452 25 31 781 43 695 9.41e-46 178
MS.gene054893.t1 MTR_2g104860 24.205 723 441 22 33 745 36 661 2.51e-45 177
MS.gene054893.t1 MTR_8g089870 25.275 819 501 26 15 802 15 753 3.28e-45 176
MS.gene054893.t1 MTR_2g036650 23.001 713 452 16 31 737 41 662 5.30e-45 176
MS.gene054893.t1 MTR_4g107500 25.352 639 365 21 131 754 137 678 9.34e-45 175
MS.gene054893.t1 MTR_8g063880 23.422 713 448 20 31 737 36 656 9.39e-45 175
MS.gene054893.t1 MTR_1g009760 22.880 743 466 21 10 737 9 659 1.01e-44 174
MS.gene054893.t1 MTR_1g009760 23.001 713 451 20 31 737 36 656 2.93e-44 174
MS.gene054893.t1 MTR_6g011310 25.585 641 361 22 131 754 135 676 4.20e-44 173
MS.gene054893.t1 MTR_6g011310 25.117 641 359 21 131 754 135 671 5.91e-43 169
MS.gene054893.t1 MTR_1g009720 22.937 715 449 21 31 737 36 656 9.48e-43 169
MS.gene054893.t1 MTR_8g006790 22.659 737 444 21 31 745 38 670 3.18e-41 164
MS.gene054893.t1 MTR_4g094695 23.983 688 405 19 59 740 362 937 6.03e-26 115
MS.gene054893.t1 MTR_3g097560 24.468 752 413 31 30 700 166 843 9.81e-25 112
MS.gene054893.t1 MTR_2g090610 21.387 865 516 29 52 783 34 867 2.78e-19 94.0
MS.gene054893.t1 MTR_2g090610 21.387 865 516 29 52 783 34 867 2.90e-19 94.4
MS.gene054893.t1 MTR_2g035840 30.811 185 94 2 558 742 788 938 5.41e-18 90.1
MS.gene054893.t1 MTR_8g079250 27.568 185 100 2 558 742 788 938 2.41e-16 84.7
MS.gene054893.t1 MTR_5g010420 31.250 160 76 2 560 719 781 906 9.29e-16 82.8
MS.gene054893.t1 MTR_8g012390 29.730 185 96 2 558 742 759 909 1.82e-14 78.6
MS.gene054893.t1 MTR_4g008640 40.000 105 52 2 495 599 77 170 6.71e-14 71.2
MS.gene054893.t1 MTR_5g052190 50.000 66 32 1 437 502 282 346 2.44e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054893.t1 AT3G63380 73.340 934 232 5 2 935 100 1016 0.0 1321
MS.gene054893.t1 AT3G22910 68.936 940 272 6 1 938 94 1015 0.0 1238
MS.gene054893.t1 AT4G29900 56.794 942 391 8 1 935 127 1059 0.0 1033
MS.gene054893.t1 AT4G29900 56.794 942 391 8 1 935 127 1059 0.0 1033
MS.gene054893.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene054893.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene054893.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene054893.t1 AT3G21180 55.932 944 397 9 1 935 141 1074 0.0 995
MS.gene054893.t1 AT3G57330 48.453 937 434 14 1 925 106 1005 0.0 854
MS.gene054893.t1 AT3G57330 48.453 937 434 14 1 925 51 950 0.0 853
MS.gene054893.t1 AT2G41560 47.447 940 444 15 3 928 108 1011 0.0 825
MS.gene054893.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene054893.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene054893.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene054893.t1 AT1G27770 47.701 935 449 11 3 925 48 954 0.0 805
MS.gene054893.t1 AT1G27770 47.701 935 449 11 3 925 111 1017 0.0 805
MS.gene054893.t1 AT1G27770 47.701 935 449 11 3 925 111 1017 0.0 805
MS.gene054893.t1 AT4G37640 48.081 938 440 11 3 925 109 1014 0.0 794
MS.gene054893.t1 AT2G22950 47.868 938 443 15 3 925 109 1015 0.0 792
MS.gene054893.t1 AT5G53010 35.398 904 493 14 1 872 153 997 5.27e-164 508
MS.gene054893.t1 AT1G27770 40.759 606 327 11 3 600 111 692 2.82e-117 382
MS.gene054893.t1 AT1G27770 56.958 309 128 2 622 925 635 943 8.36e-112 367
MS.gene054893.t1 AT5G53010 35.093 644 395 7 1 642 153 775 6.24e-112 363
MS.gene054893.t1 AT1G07810 31.523 847 484 22 31 806 47 868 5.21e-106 354
MS.gene054893.t1 AT1G07670 31.604 848 482 22 31 806 47 868 4.49e-105 351
MS.gene054893.t1 AT1G07670 31.604 848 482 22 31 806 47 868 4.49e-105 351
MS.gene054893.t1 AT4G00900 30.160 998 569 28 31 924 30 1003 1.57e-101 342
MS.gene054893.t1 AT4G00900 30.160 998 569 28 31 924 30 1003 1.57e-101 342
MS.gene054893.t1 AT1G10130 28.786 997 575 27 20 923 16 970 3.41e-94 320
MS.gene054893.t1 AT3G60330 24.288 737 424 24 31 745 37 661 1.30e-49 191
MS.gene054893.t1 AT3G60330 24.288 737 424 24 31 745 37 661 1.30e-49 191
MS.gene054893.t1 AT3G60330 24.152 737 425 24 31 745 37 661 2.92e-49 189
MS.gene054893.t1 AT3G60330 24.152 737 425 24 31 745 37 661 2.92e-49 189
MS.gene054893.t1 AT2G24520 24.473 711 443 19 31 737 16 636 1.26e-48 187
MS.gene054893.t1 AT2G24520 24.473 711 443 19 31 737 16 636 1.26e-48 187
MS.gene054893.t1 AT2G24520 24.473 711 443 19 31 737 79 699 1.52e-48 187
MS.gene054893.t1 AT1G17260 23.776 858 523 25 13 848 27 775 3.57e-48 186
MS.gene054893.t1 AT3G42640 24.561 741 420 25 31 745 37 664 3.74e-47 183
MS.gene054893.t1 AT2G18960 26.010 619 351 16 131 737 67 590 3.31e-44 173
MS.gene054893.t1 AT2G18960 26.010 619 351 16 131 737 67 590 3.31e-44 173
MS.gene054893.t1 AT2G18960 26.010 619 351 16 131 737 131 654 5.65e-44 173
MS.gene054893.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene054893.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene054893.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene054893.t1 AT2G07560 23.481 724 448 22 31 745 37 663 6.96e-43 169
MS.gene054893.t1 AT4G30190 23.977 709 435 18 38 737 41 654 8.65e-43 169
MS.gene054893.t1 AT1G80660 23.731 729 441 23 31 745 39 666 1.48e-42 168
MS.gene054893.t1 AT1G80660 23.731 729 441 23 31 745 39 666 1.60e-42 168
MS.gene054893.t1 AT5G62670 24.214 636 376 20 131 754 135 676 1.65e-42 168
MS.gene054893.t1 AT1G80660 23.731 729 441 23 31 745 39 666 2.14e-42 168
MS.gene054893.t1 AT1G80660 25.080 626 363 20 131 745 7 537 1.09e-41 165
MS.gene054893.t1 AT3G47950 24.111 647 363 21 131 754 139 680 1.17e-41 166
MS.gene054893.t1 AT3G47950 24.111 647 363 21 131 754 139 680 1.17e-41 166
MS.gene054893.t1 AT4G30190 23.004 739 438 19 38 737 41 687 2.56e-38 155
MS.gene054893.t1 AT2G24520 25.173 433 268 9 305 737 17 393 3.01e-33 137
MS.gene054893.t1 AT5G57350 25.282 443 255 12 305 737 17 393 2.00e-30 129
MS.gene054893.t1 AT4G11730 23.251 486 303 13 94 575 92 511 8.45e-22 102
MS.gene054893.t1 AT1G63440 31.892 185 92 3 558 742 787 937 6.46e-19 93.2
MS.gene054893.t1 AT5G23630 22.117 737 422 24 30 687 166 829 3.19e-18 90.9
MS.gene054893.t1 AT5G44790 31.892 185 92 2 558 742 798 948 2.40e-17 87.8
MS.gene054893.t1 AT4G30110 27.895 190 106 3 555 744 508 666 5.26e-16 83.6
MS.gene054893.t1 AT4G30110 27.895 190 106 3 555 744 508 666 5.26e-16 83.6
MS.gene054893.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3
MS.gene054893.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3
MS.gene054893.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3

Find 0 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGATTATATGATCAAA+AGG - 50685:7341-7360 MS.gene054893:CDS 15.0%
!!! TATTGATTATATGATCAAAA+GGG - 50685:7342-7361 MS.gene054893:CDS 15.0%
!! AGAAACTTTATGTATTTGAA+GGG - 50685:8304-8323 MS.gene054893:CDS 20.0%
!! ATTCATAACATCGTTTATAT+CGG + 50685:6600-6619 MS.gene054893:intergenic 20.0%
!! GATCATATAATCAATATCTT+CGG + 50685:7338-7357 MS.gene054893:intergenic 20.0%
!!! ACAAACTATATTGATAGTAA+TGG - 50685:7199-7218 MS.gene054893:CDS 20.0%
! AGTTAAATGTTTCAACATGA+AGG + 50685:7078-7097 MS.gene054893:intergenic 25.0%
! ATCAATCTTCAATGTAAGTA+AGG - 50685:8206-8225 MS.gene054893:CDS 25.0%
! CACATAATGTTTGTAATAAG+AGG + 50685:8120-8139 MS.gene054893:intergenic 25.0%
! CTCTTATTACAAACATTATG+TGG - 50685:8118-8137 MS.gene054893:CDS 25.0%
! GAGAAACTTTATGTATTTGA+AGG - 50685:8303-8322 MS.gene054893:CDS 25.0%
! GTTGAAACTGAATAAATTTC+TGG + 50685:7912-7931 MS.gene054893:intergenic 25.0%
! TCAAAAATTGATATCTGTTG+AGG + 50685:6155-6174 MS.gene054893:intergenic 25.0%
! TGATACAGAAAGATTAACAT+GGG - 50685:8413-8432 MS.gene054893:CDS 25.0%
! TTAATGAAGAAAAAGCCAAT+AGG - 50685:8084-8103 MS.gene054893:CDS 25.0%
!! ACAAAATGTAAAAGACCTTT+TGG + 50685:5891-5910 MS.gene054893:intergenic 25.0%
!! ACTTGTTTCTTGGAATTATT+GGG - 50685:8340-8359 MS.gene054893:CDS 25.0%
!! ATCAATTTTTGATGTTCTTG+TGG - 50685:6163-6182 MS.gene054893:CDS 25.0%
!! TCAATTTTTGATGTTCTTGT+GGG - 50685:6164-6183 MS.gene054893:CDS 25.0%
!! TTCTTCATTAACTCTTTTGT+AGG + 50685:8075-8094 MS.gene054893:intergenic 25.0%
!! TTCTTCTAGTGTTGTTAATT+CGG - 50685:6516-6535 MS.gene054893:CDS 25.0%
!! TTCTTTTATACCAAAACCAA+GGG + 50685:5970-5989 MS.gene054893:intergenic 25.0%
AAAATTGAGAGAACCATTCA+AGG - 50685:7256-7275 MS.gene054893:CDS 30.0%
AAAGTTGAAGTTGTGAGAAA+TGG - 50685:6125-6144 MS.gene054893:CDS 30.0%
AACAAAAAAGGAGCTCTTAA+AGG + 50685:6311-6330 MS.gene054893:intergenic 30.0%
AACAACAGTTCAACTTCTTT+GGG - 50685:7999-8018 MS.gene054893:CDS 30.0%
AATAATGATCATGCAAATGC+TGG - 50685:7562-7581 MS.gene054893:CDS 30.0%
AATCTCATTATGGATACACT+AGG - 50685:8024-8043 MS.gene054893:CDS 30.0%
AATCTTCAATGTAAGTAAGG+AGG - 50685:8209-8228 MS.gene054893:CDS 30.0%
AGAAGTTGAACTGTTGTTAA+AGG + 50685:7997-8016 MS.gene054893:intergenic 30.0%
AGTTGAATTCGTTGAAAACT+TGG + 50685:8272-8291 MS.gene054893:intergenic 30.0%
ATTAGATTTAGGTATGGACA+TGG - 50685:7027-7046 MS.gene054893:CDS 30.0%
CAATAATTCCAAGAAACAAG+TGG + 50685:8341-8360 MS.gene054893:intergenic 30.0%
CTGATACAGAAAGATTAACA+TGG - 50685:8412-8431 MS.gene054893:CDS 30.0%
GTTGAAATTAAGATGATCAC+CGG - 50685:7484-7503 MS.gene054893:CDS 30.0%
TAACAACAGTTCAACTTCTT+TGG - 50685:7998-8017 MS.gene054893:CDS 30.0%
TATTGTTCTTCAAATCCTGA+TGG - 50685:8368-8387 MS.gene054893:CDS 30.0%
TCTCATTTGATTCAATGTCA+AGG + 50685:6816-6835 MS.gene054893:intergenic 30.0%
TGAATTCAGAAACTATACAG+AGG - 50685:7603-7622 MS.gene054893:CDS 30.0%
TTACTCCATGAAAAGAATGA+TGG - 50685:6709-6728 MS.gene054893:CDS 30.0%
TTCCTTCAGTTATACTAAGT+GGG - 50685:8521-8540 MS.gene054893:CDS 30.0%
TTGTTAATTCGGTATTTCAC+CGG - 50685:6527-6546 MS.gene054893:CDS 30.0%
! AAATGTAAAAGACCTTTTGG+TGG + 50685:5888-5907 MS.gene054893:intergenic 30.0%
! ATTCTGTTGCAACTGTTTTA+AGG - 50685:7860-7879 MS.gene054893:CDS 30.0%
! CACTTGTTTCTTGGAATTAT+TGG - 50685:8339-8358 MS.gene054893:CDS 30.0%
! CTTAAAAACCACTTGTTTCT+TGG - 50685:8330-8349 MS.gene054893:CDS 30.0%
! CTTCTGATTATGCAGTTTTA+TGG - 50685:8180-8199 MS.gene054893:CDS 30.0%
! GATCTGAACCTGAAATTTTA+GGG - 50685:6969-6988 MS.gene054893:CDS 30.0%
! GTTCTTTTATACCAAAACCA+AGG + 50685:5971-5990 MS.gene054893:intergenic 30.0%
! TCCTATATCAGCTTCTTTTA+AGG + 50685:7767-7786 MS.gene054893:intergenic 30.0%
! TGAAAACTTTTCCAATGCAA+TGG - 50685:6871-6890 MS.gene054893:CDS 30.0%
!! GGTTTTGGTATAAAAGAACA+TGG - 50685:5972-5991 MS.gene054893:CDS 30.0%
AAAGAAAGGTCATGTAGTTG+CGG - 50685:7711-7730 MS.gene054893:CDS 35.0%
AAAGATTAACATGGGAGCAA+TGG - 50685:8421-8440 MS.gene054893:CDS 35.0%
AAAGGGAATAAGGAATTTCG+AGG - 50685:6566-6585 MS.gene054893:CDS 35.0%
AACCCACTTAGTATAACTGA+AGG + 50685:8526-8545 MS.gene054893:intergenic 35.0%
AACTCAGAAAAGAAACGAAG+TGG - 50685:7094-7113 MS.gene054893:CDS 35.0%
AAGATTAACATGGGAGCAAT+GGG - 50685:8422-8441 MS.gene054893:CDS 35.0%
AAGGCAATAGCAATAGAATG+TGG - 50685:7526-7545 MS.gene054893:CDS 35.0%
AATGTTTGTAATAAGAGGCG+CGG + 50685:8115-8134 MS.gene054893:intergenic 35.0%
ACATGATGAGAAAGGGAATA+AGG - 50685:6556-6575 MS.gene054893:CDS 35.0%
ACCATCAAAAGTTTGTCCAT+AGG + 50685:7679-7698 MS.gene054893:intergenic 35.0%
ACTTTCAGCTTGTGAAACTA+TGG - 50685:6754-6773 MS.gene054893:CDS 35.0%
AGCTGATATAGGACTTTCTA+TGG - 50685:7774-7793 MS.gene054893:CDS 35.0%
ATGTGGGCAGTATTAGATTT+AGG - 50685:7016-7035 MS.gene054893:CDS 35.0%
CAATGTAAGTAAGGAGGTAA+AGG - 50685:8215-8234 MS.gene054893:CDS 35.0%
CACTTAGTATAACTGAAGGA+AGG + 50685:8522-8541 MS.gene054893:intergenic 35.0%
CATCAAAAGTTTGTCCATAG+GGG + 50685:7677-7696 MS.gene054893:intergenic 35.0%
CATCAAATGCTTAGAGAAGA+TGG - 50685:7376-7395 MS.gene054893:CDS 35.0%
CCATCAAAAGTTTGTCCATA+GGG + 50685:7678-7697 MS.gene054893:intergenic 35.0%
CGATAACATATTCACTGCTA+AGG - 50685:7507-7526 MS.gene054893:CDS 35.0%
CTTCCTTCAGTTATACTAAG+TGG - 50685:8520-8539 MS.gene054893:CDS 35.0%
CTTGGAACATTTCCAACAAA+GGG - 50685:5792-5811 MS.gene054893:CDS 35.0%
CTTTCAGCTTGTGAAACTAT+GGG - 50685:6755-6774 MS.gene054893:CDS 35.0%
GATAAAAATACTCCATCAGC+TGG + 50685:6224-6243 MS.gene054893:intergenic 35.0%
GCCTTAAAAGAAGCTGATAT+AGG - 50685:7763-7782 MS.gene054893:CDS 35.0%
GCTGATATAGGACTTTCTAT+GGG - 50685:7775-7794 MS.gene054893:CDS 35.0%
GGCAGTATTAGATTTAGGTA+TGG - 50685:7021-7040 MS.gene054893:CDS 35.0%
GTAACTCACATGATGAGAAA+GGG - 50685:6549-6568 MS.gene054893:CDS 35.0%
GTATAAAAGAACATGGACCA+GGG - 50685:5979-5998 MS.gene054893:CDS 35.0%
GTGCAATGCTTAAGAAAGAA+AGG - 50685:7697-7716 MS.gene054893:CDS 35.0%
TATAAAAGAACATGGACCAG+GGG - 50685:5980-5999 MS.gene054893:CDS 35.0%
TCTTGGAACATTTCCAACAA+AGG - 50685:5791-5810 MS.gene054893:CDS 35.0%
TCTTTGGGTGAATCTCATTA+TGG - 50685:8014-8033 MS.gene054893:CDS 35.0%
TGTGGGAAAAAACACATCAT+GGG - 50685:6379-6398 MS.gene054893:CDS 35.0%
TTAAAGGCTCAATCTCTACA+TGG + 50685:6295-6314 MS.gene054893:intergenic 35.0%
TTCAAGACCAAGACAAAACT+TGG + 50685:6843-6862 MS.gene054893:intergenic 35.0%
TTGAAGTCCTTAACTGAGTT+TGG - 50685:5744-5763 MS.gene054893:CDS 35.0%
TTGAAGTTGTGAGAAATGGA+AGG - 50685:6129-6148 MS.gene054893:CDS 35.0%
TTTATTGCAGCAGTTTCTTC+TGG - 50685:7964-7983 MS.gene054893:CDS 35.0%
TTTCCAACAAAGGGAATCAT+TGG - 50685:5801-5820 MS.gene054893:CDS 35.0%
TTTCTCATCATGTGAGTTAC+CGG + 50685:6549-6568 MS.gene054893:intergenic 35.0%
! AAGGAAGGTTTATCTGAAAC+AGG + 50685:8507-8526 MS.gene054893:intergenic 35.0%
! ATATTGATAGTAATGGCGTG+AGG - 50685:7206-7225 MS.gene054893:CDS 35.0%
! ATCATTCTTCTTGTTTGTGC+TGG - 50685:5939-5958 MS.gene054893:CDS 35.0%
! ATCTGCCATCATTCTTTTCA+TGG + 50685:6717-6736 MS.gene054893:intergenic 35.0%
! GGATCTGAACCTGAAATTTT+AGG - 50685:6968-6987 MS.gene054893:CDS 35.0%
! GTTATCTGCACTGATAAAAC+AGG - 50685:6788-6807 MS.gene054893:CDS 35.0%
! TCTAGCAGTTTTTCTTGTTG+TGG - 50685:6031-6050 MS.gene054893:CDS 35.0%
! TGGAACAACTCAAGAACTTT+TGG + 50685:6899-6918 MS.gene054893:intergenic 35.0%
! TTCTTGAGTTGTTCCAACAA+GGG - 50685:6903-6922 MS.gene054893:CDS 35.0%
! TTGGAATTGCAGTTGTTTCA+TGG - 50685:8454-8473 MS.gene054893:CDS 35.0%
!! ATGTATTGCTTTTGCTCACA+CGG - 50685:7300-7319 MS.gene054893:CDS 35.0%
!! GCTGATGGAGTATTTTTATC+CGG - 50685:6224-6243 MS.gene054893:CDS 35.0%
!!! ATATCAGCTTCTTTTAAGGC+AGG + 50685:7763-7782 MS.gene054893:intergenic 35.0%
!!! TGTTGCAACTGTTTTAAGGT+GGG - 50685:7864-7883 MS.gene054893:CDS 35.0%
AACTCCTCCAAACTCAGTTA+AGG + 50685:5754-5773 MS.gene054893:intergenic 40.0%
AAGTCCTTAACTGAGTTTGG+AGG - 50685:5747-5766 MS.gene054893:CDS 40.0%
AATGATGGCAGATCATGCTA+TGG - 50685:6724-6743 MS.gene054893:CDS 40.0%
ACCAAACACTAAGAAAGCTG+TGG - 50685:7441-7460 MS.gene054893:CDS 40.0%
AGATTAACATGGGAGCAATG+GGG - 50685:8423-8442 MS.gene054893:CDS 40.0%
AGCAGTGAATATGTTATCGC+CGG + 50685:7506-7525 MS.gene054893:intergenic 40.0%
AGCTTTACTAAGCAAGCAAG+TGG + 50685:8480-8499 MS.gene054893:intergenic 40.0%
ATGAGTATAGCTTTCTCCGT+TGG + 50685:6998-7017 MS.gene054893:intergenic 40.0%
CAGATGCTTGTAACATCTGT+GGG - 50685:6362-6381 MS.gene054893:CDS 40.0%
CGAATTCAACTCAAGAAGCA+TGG - 50685:8281-8300 MS.gene054893:CDS 40.0%
CTATACAGAGGAAGAGAGAA+TGG - 50685:7615-7634 MS.gene054893:CDS 40.0%
CTGTGGGAAAAAACACATCA+TGG - 50685:6378-6397 MS.gene054893:CDS 40.0%
CTTCCAATGATTCCCTTTGT+TGG + 50685:5807-5826 MS.gene054893:intergenic 40.0%
GACAAGTTAACCTCTTCGAT+TGG - 50685:6464-6483 MS.gene054893:CDS 40.0%
GACGATATCGGAACTTTCTT+TGG + 50685:7821-7840 MS.gene054893:intergenic 40.0%
GAGCAATGGGGAATTTGTAT+TGG - 50685:8435-8454 MS.gene054893:CDS 40.0%
GATATGAAGCTTGAGCTAGA+AGG + 50685:8149-8168 MS.gene054893:intergenic 40.0%
GATGTTGTGTCTCTCAAGAT+TGG - 50685:6188-6207 MS.gene054893:CDS 40.0%
GGAGAAAGCTATACTCATGT+GGG - 50685:7000-7019 MS.gene054893:CDS 40.0%
GGTAACTCACATGATGAGAA+AGG - 50685:6548-6567 MS.gene054893:CDS 40.0%
GGTATAAAAGAACATGGACC+AGG - 50685:5978-5997 MS.gene054893:CDS 40.0%
GTGCAGATGATATTTCGAGA+CGG - 50685:5826-5845 MS.gene054893:CDS 40.0%
GTGGGAAAAAACACATCATG+GGG - 50685:6380-6399 MS.gene054893:CDS 40.0%
GTTAACCTCTTCGATTGGAA+AGG - 50685:6469-6488 MS.gene054893:CDS 40.0%
TACAAAAAGCCACCACCAAA+AGG - 50685:5873-5892 MS.gene054893:CDS 40.0%
TATGGATACACTAGGTGCTT+TGG - 50685:8032-8051 MS.gene054893:CDS 40.0%
TATTGAGTCCTATCCCTTGT+TGG + 50685:6919-6938 MS.gene054893:intergenic 40.0%
TCAGATGCTTGTAACATCTG+TGG - 50685:6361-6380 MS.gene054893:CDS 40.0%
TCCACAGCTTTCTTAGTGTT+TGG + 50685:7445-7464 MS.gene054893:intergenic 40.0%
TGAGAGAACCATTCAAGGTA+TGG - 50685:7261-7280 MS.gene054893:CDS 40.0%
TGAGTATAGCTTTCTCCGTT+GGG + 50685:6997-7016 MS.gene054893:intergenic 40.0%
TGTTCTTCAAATCCTGATGG+TGG - 50685:8371-8390 MS.gene054893:CDS 40.0%
TTCTTAGTGTTTGGTCTGCA+TGG + 50685:7436-7455 MS.gene054893:intergenic 40.0%
TTGACATTGCTTGGTATCGT+TGG - 50685:7400-7419 MS.gene054893:CDS 40.0%
! CCCTATGGACAAACTTTTGA+TGG - 50685:7675-7694 MS.gene054893:CDS 40.0%
! GTCGTCTAAGATGACGATAT+CGG + 50685:7833-7852 MS.gene054893:intergenic 40.0%
! GTTCTTGAGTTGTTCCAACA+AGG - 50685:6902-6921 MS.gene054893:CDS 40.0%
! TGTAAAAGACCTTTTGGTGG+TGG + 50685:5885-5904 MS.gene054893:intergenic 40.0%
! TTCTGTTGTGAGTATCGTTG+CGG - 50685:6619-6638 MS.gene054893:CDS 40.0%
!! AACGAAGTGGTGTTGCTATA+AGG - 50685:7107-7126 MS.gene054893:CDS 40.0%
!! AGAGTGACCAAGTTTTGTCT+TGG - 50685:6833-6852 MS.gene054893:CDS 40.0%
!! ATTTCAGGTTCAGATCCTGA+TGG + 50685:6965-6984 MS.gene054893:intergenic 40.0%
!! GAAGATGGATTGACATTGCT+TGG - 50685:7391-7410 MS.gene054893:CDS 40.0%
!! TGAAATTTTAGGGAGCCCAA+CGG - 50685:6979-6998 MS.gene054893:CDS 40.0%
!!! AACTTTTGGTGCCATTGCAT+TGG + 50685:6885-6904 MS.gene054893:intergenic 40.0%
!!! AGAGCTCCTTTTTTGTTGTC+CGG - 50685:6314-6333 MS.gene054893:CDS 40.0%
!!! CTGTTGCAACTGTTTTAAGG+TGG - 50685:7863-7882 MS.gene054893:CDS 40.0%
!!! GTTGCAACTGTTTTAAGGTG+GGG - 50685:7865-7884 MS.gene054893:CDS 40.0%
AATGCTGGAGAAGTGGTTGA+AGG - 50685:7577-7596 MS.gene054893:CDS 45.0%
ACCTCTTCGATTGGAAAGGT+TGG - 50685:6473-6492 MS.gene054893:CDS 45.0%
ACTAGCAGCCATACCTTGAA+TGG + 50685:7272-7291 MS.gene054893:intergenic 45.0%
ACTCCGTTCTTCTTCGTCAA+GGG + 50685:7236-7255 MS.gene054893:intergenic 45.0%
ACTGAGTTTGGAGGAGTTGA+AGG - 50685:5756-5775 MS.gene054893:CDS 45.0%
AGTCCCTTGACGAAGAAGAA+CGG - 50685:7230-7249 MS.gene054893:CDS 45.0%
AGTCGATAAGATCCGAGTGA+TGG - 50685:7642-7661 MS.gene054893:CDS 45.0%
AGTGTCTATAAGCCTCCATC+AGG - 50685:6947-6966 MS.gene054893:CDS 45.0%
ATCCGGTTATTCGTTGCAAG+TGG - 50685:6241-6260 MS.gene054893:CDS 45.0%
CGGAGAAAGCTATACTCATG+TGG - 50685:6999-7018 MS.gene054893:CDS 45.0%
CTTTGGCACTAGCAACAGAA+AGG - 50685:8049-8068 MS.gene054893:CDS 45.0%
GAGTTGTTCCAACAAGGGAT+AGG - 50685:6908-6927 MS.gene054893:CDS 45.0%
GGAACTTTCTTTGGCGACTT+CGG + 50685:7812-7831 MS.gene054893:intergenic 45.0%
GGACTTTCTATGGGAATCCA+AGG - 50685:7784-7803 MS.gene054893:CDS 45.0%
GGGATAGGACTCAATACAAC+TGG - 50685:6923-6942 MS.gene054893:CDS 45.0%
GGTGATCAAATTCCAGCTGA+TGG - 50685:6209-6228 MS.gene054893:CDS 45.0%
GTCCACTTGCAACGAATAAC+CGG + 50685:6246-6265 MS.gene054893:intergenic 45.0%
GTTGGGCTCCCTAAAATTTC+AGG + 50685:6980-6999 MS.gene054893:intergenic 45.0%
TACTCCGTTCTTCTTCGTCA+AGG + 50685:7237-7256 MS.gene054893:intergenic 45.0%
TCATGCAAATGCTGGAGAAG+TGG - 50685:7570-7589 MS.gene054893:CDS 45.0%
TCCAACCTTTCCAATCGAAG+AGG + 50685:6477-6496 MS.gene054893:intergenic 45.0%
TTTGCGCCGGACAACAAAAA+AGG + 50685:6323-6342 MS.gene054893:intergenic 45.0%
! TTTGGAGGAGTTGAAGGTGT+TGG - 50685:5762-5781 MS.gene054893:CDS 45.0%
!! GAAGGTGTTGGACATGTTCT+TGG - 50685:5774-5793 MS.gene054893:CDS 45.0%
!! TCGAAGAGGTTAACTTGTCG+AGG + 50685:6463-6482 MS.gene054893:intergenic 45.0%
AAAGAACATGGACCAGGGGA+AGG - 50685:5984-6003 MS.gene054893:CDS 50.0%
ACAACAGCGTTCACGTGCAT+TGG - 50685:7143-7162 MS.gene054893:CDS 50.0%
AGAGTGAGTGTCACAGCCAA+TGG + 50685:6686-6705 MS.gene054893:intergenic 50.0%
AGCGTTCACGTGCATTGGAA+AGG - 50685:7148-7167 MS.gene054893:CDS 50.0%
GATGGCAAGATCATCCCCTA+TGG - 50685:7660-7679 MS.gene054893:CDS 50.0%
GGGATGATCTTGCCATCACT+CGG + 50685:7657-7676 MS.gene054893:intergenic 50.0%
GTGGAAACTTGCAAAGCTGC+AGG - 50685:7460-7479 MS.gene054893:CDS 50.0%
GTGGACGAATCTAGCATGAC+AGG - 50685:6260-6279 MS.gene054893:CDS 50.0%
TCAGGTTCAGATCCTGATGG+AGG + 50685:6962-6981 MS.gene054893:intergenic 50.0%
TCCTTAGCAGTTCCACCATC+AGG + 50685:8386-8405 MS.gene054893:intergenic 50.0%
TGGCAGATCATGCTATGGTG+AGG - 50685:6729-6748 MS.gene054893:CDS 50.0%
TTGGTCTGCATGGATCCTTG+AGG + 50685:7426-7445 MS.gene054893:intergenic 50.0%
TTGTCGAGGCGTGCTTGTAA+CGG + 50685:6449-6468 MS.gene054893:intergenic 50.0%
! TCCATCGACAACTTTTGCGC+CGG + 50685:6336-6355 MS.gene054893:intergenic 50.0%
!! GTTTGTGCTGGTCTTTCCCT+TGG - 50685:5951-5970 MS.gene054893:CDS 50.0%
!! TCCTGATGGTGGAACTGCTA+AGG - 50685:8382-8401 MS.gene054893:CDS 50.0%
!!! GCTGGTCTTTCCCTTGGTTT+TGG - 50685:5957-5976 MS.gene054893:CDS 50.0%
AACATGGACCAGGGGAAGGT+TGG - 50685:5988-6007 MS.gene054893:CDS 55.0%
ACAGCCAATGGCAAACCCTC+AGG + 50685:6674-6693 MS.gene054893:intergenic 55.0%
CAATGGCAAACCCTCAGGGA+TGG + 50685:6669-6688 MS.gene054893:intergenic 55.0%
CAGCCAATGGCAAACCCTCA+GGG + 50685:6673-6692 MS.gene054893:intergenic 55.0%
CATCCCTGAGGGTTTGCCAT+TGG - 50685:6667-6686 MS.gene054893:CDS 55.0%
CCTTCATACCAACCTTCCCC+TGG + 50685:5999-6018 MS.gene054893:intergenic 55.0%
CTTTGGCGACTTCGGTTCCT+TGG + 50685:7804-7823 MS.gene054893:intergenic 55.0%
GGTCATGTAGTTGCGGTCAC+AGG - 50685:7718-7737 MS.gene054893:CDS 55.0%
TCCGGCGCAAAAGTTGTCGA+TGG - 50685:6332-6351 MS.gene054893:CDS 55.0%
TGCGGCTGCAGTCACTATTG+TGG - 50685:6637-6656 MS.gene054893:CDS 55.0%
! GCTTGGTATCGTTGGCCTCA+AGG - 50685:7408-7427 MS.gene054893:CDS 55.0%
! TCGAGACGGCTCGAGTTGTT+CGG - 50685:5840-5859 MS.gene054893:CDS 55.0%
!! CCAGGGGAAGGTTGGTATGA+AGG - 50685:5996-6015 MS.gene054893:CDS 55.0%
!! GGGGAAGGTTGGTATGAAGG+TGG - 50685:5999-6018 MS.gene054893:CDS 55.0%
GTAGTTGCGGTCACAGGCGA+CGG - 50685:7724-7743 MS.gene054893:CDS 60.0%
GTGGTCGTTGCCATCCCTGA+GGG - 50685:6656-6675 MS.gene054893:CDS 60.0%
TGTGGTCGTTGCCATCCCTG+AGG - 50685:6655-6674 MS.gene054893:CDS 60.0%
! AGAGGCGCGGTTCGACCTAT+TGG + 50685:8102-8121 MS.gene054893:intergenic 60.0%


Chromosome Type Strat End Strand Name
50685 gene 5735 8581 5735 ID=MS.gene054893
50685 mRNA 5735 8581 5735 ID=MS.gene054893.t1;Parent=MS.gene054893
50685 exon 5735 8581 5735 ID=MS.gene054893.t1.exon1;Parent=MS.gene054893.t1
50685 CDS 5735 8581 5735 ID=cds.MS.gene054893.t1;Parent=MS.gene054893.t1
Gene Sequence

>MS.gene054893

GACAAAAACTTGAAGTCCTTAACTGAGTTTGGAGGAGTTGAAGGTGTTGGACATGTTCTTGGAACATTTCCAACAAAGGGAATCATTGGAAGTGCAGATGATATTTCGAGACGGCTCGAGTTGTTCGGTTCAAATACTTACAAAAAGCCACCACCAAAAGGTCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACAATTATCATTCTTCTTGTTTGTGCTGGTCTTTCCCTTGGTTTTGGTATAAAAGAACATGGACCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTAGCAGTTTTTCTTGTTGTGGTTGTAAGTGCACTAAGCAATTTTAGACAAGAAAGACAGTTTCACAAATTGTCTAAGATAAGCAACAATATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCTCAACAGATATCAATTTTTGATGTTCTTGTGGGAGATGTTGTGTCTCTCAAGATTGGTGATCAAATTCCAGCTGATGGAGTATTTTTATCCGGTTATTCGTTGCAAGTGGACGAATCTAGCATGACAGGTGAGAGCGACCATGTAGAGATTGAGCCTTTAAGAGCTCCTTTTTTGTTGTCCGGCGCAAAAGTTGTCGATGGATATGCTCAGATGCTTGTAACATCTGTGGGAAAAAACACATCATGGGGACAAATGATGAGCTCGATATCGCGAGACACTAATGAAAGAACGCCGTTACAAGCACGCCTCGACAAGTTAACCTCTTCGATTGGAAAGGTTGGACTTGCAGTAGCGTTTCTTGTTCTTCTAGTGTTGTTAATTCGGTATTTCACCGGTAACTCACATGATGAGAAAGGGAATAAGGAATTTCGAGGAAGCAAAACCGATATAAACGATGTTATGAATTCTGTTGTGAGTATCGTTGCGGCTGCAGTCACTATTGTGGTCGTTGCCATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGATCATGCTATGGTGAGGAAACTTTCAGCTTGTGAAACTATGGGATCAGCAACAGTTATCTGCACTGATAAAACAGGTACCTTGACATTGAATCAAATGAGAGTGACCAAGTTTTGTCTTGGTCTTGAAAATATTATTGAAAACTTTTCCAATGCAATGGCACCAAAAGTTCTTGAGTTGTTCCAACAAGGGATAGGACTCAATACAACTGGTAGTGTCTATAAGCCTCCATCAGGATCTGAACCTGAAATTTTAGGGAGCCCAACGGAGAAAGCTATACTCATGTGGGCAGTATTAGATTTAGGTATGGACATGGATGAAATGAAACAGAAGCATAAAGTCCTTCATGTTGAAACATTTAACTCAGAAAAGAAACGAAGTGGTGTTGCTATAAGGAAAGAGAACGACGACAACAGCGTTCACGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTACAAACTATATTGATAGTAATGGCGTGAGGAAGTCCCTTGACGAAGAAGAACGGAGTAAAATTGAGAGAACCATTCAAGGTATGGCTGCTAGTAGTTTAAGATGTATTGCTTTTGCTCACACGGAAATTTCAGATTCCGAAGATATTGATTATATGATCAAAAGGGAGAAAAAATCACATCAAATGCTTAGAGAAGATGGATTGACATTGCTTGGTATCGTTGGCCTCAAGGATCCATGCAGACCAAACACTAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACTGCTAAGGCAATAGCAATAGAATGTGGAATATTAGATTCTAATAATGATCATGCAAATGCTGGAGAAGTGGTTGAAGGTGTTGAATTCAGAAACTATACAGAGGAAGAGAGAATGGAAAAAGTCGATAAGATCCGAGTGATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTGCAATGCTTAAGAAAGAAAGGTCATGTAGTTGCGGTCACAGGCGACGGCACAAACGATGCACCTGCCTTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTCGCCAAAGAAAGTTCCGATATCGTCATCTTAGACGACAACTTCAATTCTGTTGCAACTGTTTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAGAAATTTATTCAGTTTCAACTAACAGTGAATGTTGCAGCACTTGTGATAAACTTTATTGCAGCAGTTTCTTCTGGTGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACACTAGGTGCTTTGGCACTAGCAACAGAAAGGCCTACAAAAGAGTTAATGAAGAAAAAGCCAATAGGTCGAACCGCGCCTCTTATTACAAACATTATGTGGAGAAACCTTCTAGCTCAAGCTTCATATCAGATTGCAGTTCTTCTGATTATGCAGTTTTATGGAAAATCAATCTTCAATGTAAGTAAGGAGGTAAAGGATACACTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAATTCAACTCAAGAAGCATGGAGAAACTTTATGTATTTGAAGGGATTCTTAAAAACCACTTGTTTCTTGGAATTATTGGGATTACTATTGTTCTTCAAATCCTGATGGTGGAACTGCTAAGGAAGTTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGTTGTTTCATGGCCACTTGCTTGCTTAGTAAAGCTCATACCTGTTTCAGATAAACCTTCCTTCAGTTATACTAAGTGGGTTAAATTATTAGTCTACAAGATTAAGAATGCTTTTTAA

Protein sequence

>MS.gene054893.t1

DKNLKSLTEFGGVEGVGHVLGTFPTKGIIGSADDISRRLELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVEVVRNGRPQQISIFDVLVGDVVSLKIGDQIPADGVFLSGYSLQVDESSMTGESDHVEIEPLRAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSHDEKGNKEFRGSKTDINDVMNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGLENIIENFSNAMAPKVLELFQQGIGLNTTGSVYKPPSGSEPEILGSPTEKAILMWAVLDLGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKENDDNSVHVHWKGAAEMILAMCTNYIDSNGVRKSLDEEERSKIERTIQGMAASSLRCIAFAHTEISDSEDIDYMIKREKKSHQMLREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIAIECGILDSNNDHANAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTAPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSMEKLYVFEGILKNHLFLGIIGITIVLQILMVELLRKFADTERLTWEQWGICIGIAVVSWPLACLVKLIPVSDKPSFSYTKWVKLLVYKIKNAF