AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054892


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054892.t1 MTR_7g095710 98.207 948 17 0 1 948 115 1062 0.0 1919
MS.gene054892.t1 MTR_6g016470 68.617 940 280 6 1 933 83 1014 0.0 1284
MS.gene054892.t1 MTR_4g008170 57.524 937 380 9 1 929 159 1085 0.0 1022
MS.gene054892.t1 MTR_4g008170 57.082 946 377 11 1 929 159 1092 0.0 1007
MS.gene054892.t1 MTR_2g038310 55.662 936 400 6 1 929 146 1073 0.0 999
MS.gene054892.t1 MTR_2g038310 56.140 855 360 6 1 848 146 992 0.0 902
MS.gene054892.t1 MTR_4g008650 47.436 936 447 15 3 925 108 1011 0.0 823
MS.gene054892.t1 MTR_8g090125 46.878 945 453 15 2 930 63 974 0.0 812
MS.gene054892.t1 MTR_4g096990 48.443 931 444 11 3 925 110 1012 0.0 811
MS.gene054892.t1 MTR_3g103070 47.863 936 447 13 2 925 110 1016 0.0 804
MS.gene054892.t1 MTR_5g015590 47.803 933 449 12 3 925 110 1014 0.0 801
MS.gene054892.t1 MTR_8g013780 67.414 580 176 7 363 938 1 571 0.0 792
MS.gene054892.t1 MTR_0005s0140 45.484 941 464 14 5 928 28 936 0.0 781
MS.gene054892.t1 MTR_4g043690 45.387 943 466 14 3 928 111 1021 0.0 781
MS.gene054892.t1 MTR_3g103070 48.792 869 404 13 69 925 1 840 0.0 761
MS.gene054892.t1 MTR_2g105830 54.762 714 310 9 1 711 148 851 0.0 731
MS.gene054892.t1 MTR_5g015590 47.194 873 417 13 3 859 110 954 0.0 724
MS.gene054892.t1 MTR_8g446010 41.738 932 494 15 9 925 70 967 0.0 671
MS.gene054892.t1 MTR_8g045070 40.880 932 479 15 9 925 70 944 0.0 651
MS.gene054892.t1 MTR_4g008650 46.438 758 365 14 3 751 108 833 0.0 640
MS.gene054892.t1 MTR_5g015590 46.358 755 371 11 3 751 110 836 0.0 605
MS.gene054892.t1 MTR_5g015590 44.921 699 351 11 3 695 110 780 1.64e-172 522
MS.gene054892.t1 MTR_8g013810 71.585 366 101 1 1 363 82 447 4.13e-172 511
MS.gene054892.t1 MTR_5g097270 32.337 937 559 20 2 916 114 997 1.39e-141 449
MS.gene054892.t1 MTR_4g014480 29.989 947 575 20 1 925 69 949 1.19e-116 381
MS.gene054892.t1 MTR_7g100110 31.770 853 455 24 31 789 47 866 7.91e-100 337
MS.gene054892.t1 MTR_8g027160 30.222 857 496 21 31 807 35 869 9.83e-95 320
MS.gene054892.t1 MTR_8g027160 28.902 993 584 29 31 924 35 1004 1.04e-94 323
MS.gene054892.t1 MTR_3g103270 28.455 984 568 26 17 903 41 985 1.21e-94 322
MS.gene054892.t1 MTR_2g105690 63.348 221 76 1 714 929 22 242 4.42e-92 293
MS.gene054892.t1 MTR_8g027160 29.475 743 423 20 31 694 35 755 1.18e-69 247
MS.gene054892.t1 MTR_8g027160 29.341 743 424 20 31 694 35 755 5.91e-69 245
MS.gene054892.t1 MTR_4g116950 25.350 714 419 21 38 737 44 657 1.76e-49 190
MS.gene054892.t1 MTR_7g117500 24.381 767 461 24 31 781 43 706 4.25e-49 189
MS.gene054892.t1 MTR_4g127710 23.810 714 444 19 31 737 39 659 9.89e-47 181
MS.gene054892.t1 MTR_4g127710 23.810 714 444 19 31 737 39 659 1.31e-46 181
MS.gene054892.t1 MTR_3g108800 24.051 711 446 18 31 737 35 655 1.39e-46 181
MS.gene054892.t1 MTR_3g108800 24.051 711 446 18 31 737 36 656 1.39e-46 181
MS.gene054892.t1 MTR_2g449840 23.973 730 438 22 31 745 37 664 1.58e-46 181
MS.gene054892.t1 MTR_7g117500 23.797 769 452 25 31 781 43 695 9.41e-46 178
MS.gene054892.t1 MTR_2g104860 24.205 723 441 22 33 745 36 661 2.51e-45 177
MS.gene054892.t1 MTR_8g089870 25.275 819 501 26 15 802 15 753 3.28e-45 176
MS.gene054892.t1 MTR_2g036650 23.001 713 452 16 31 737 41 662 5.30e-45 176
MS.gene054892.t1 MTR_4g107500 25.352 639 365 21 131 754 137 678 9.34e-45 175
MS.gene054892.t1 MTR_8g063880 23.422 713 448 20 31 737 36 656 9.39e-45 175
MS.gene054892.t1 MTR_1g009760 22.880 743 466 21 10 737 9 659 1.01e-44 174
MS.gene054892.t1 MTR_1g009760 23.001 713 451 20 31 737 36 656 2.93e-44 174
MS.gene054892.t1 MTR_6g011310 25.585 641 361 22 131 754 135 676 4.20e-44 173
MS.gene054892.t1 MTR_6g011310 25.117 641 359 21 131 754 135 671 5.91e-43 169
MS.gene054892.t1 MTR_1g009720 22.937 715 449 21 31 737 36 656 9.48e-43 169
MS.gene054892.t1 MTR_8g006790 22.659 737 444 21 31 745 38 670 3.18e-41 164
MS.gene054892.t1 MTR_4g094695 23.983 688 405 19 59 740 362 937 6.03e-26 115
MS.gene054892.t1 MTR_3g097560 24.468 752 413 31 30 700 166 843 9.81e-25 112
MS.gene054892.t1 MTR_2g090610 21.387 865 516 29 52 783 34 867 2.78e-19 94.0
MS.gene054892.t1 MTR_2g090610 21.387 865 516 29 52 783 34 867 2.90e-19 94.4
MS.gene054892.t1 MTR_2g035840 30.811 185 94 2 558 742 788 938 5.41e-18 90.1
MS.gene054892.t1 MTR_8g079250 27.568 185 100 2 558 742 788 938 2.41e-16 84.7
MS.gene054892.t1 MTR_5g010420 31.250 160 76 2 560 719 781 906 9.29e-16 82.8
MS.gene054892.t1 MTR_8g012390 29.730 185 96 2 558 742 759 909 1.82e-14 78.6
MS.gene054892.t1 MTR_4g008640 40.000 105 52 2 495 599 77 170 6.71e-14 71.2
MS.gene054892.t1 MTR_5g052190 50.000 66 32 1 437 502 282 346 2.44e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054892.t1 AT3G63380 73.340 934 232 5 2 935 100 1016 0.0 1321
MS.gene054892.t1 AT3G22910 68.936 940 272 6 1 938 94 1015 0.0 1238
MS.gene054892.t1 AT4G29900 56.794 942 391 8 1 935 127 1059 0.0 1033
MS.gene054892.t1 AT4G29900 56.794 942 391 8 1 935 127 1059 0.0 1033
MS.gene054892.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene054892.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene054892.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene054892.t1 AT3G21180 55.932 944 397 9 1 935 141 1074 0.0 995
MS.gene054892.t1 AT3G57330 48.453 937 434 14 1 925 106 1005 0.0 854
MS.gene054892.t1 AT3G57330 48.453 937 434 14 1 925 51 950 0.0 853
MS.gene054892.t1 AT2G41560 47.447 940 444 15 3 928 108 1011 0.0 825
MS.gene054892.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene054892.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene054892.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene054892.t1 AT1G27770 47.701 935 449 11 3 925 48 954 0.0 805
MS.gene054892.t1 AT1G27770 47.701 935 449 11 3 925 111 1017 0.0 805
MS.gene054892.t1 AT1G27770 47.701 935 449 11 3 925 111 1017 0.0 805
MS.gene054892.t1 AT4G37640 48.081 938 440 11 3 925 109 1014 0.0 794
MS.gene054892.t1 AT2G22950 47.868 938 443 15 3 925 109 1015 0.0 792
MS.gene054892.t1 AT5G53010 35.398 904 493 14 1 872 153 997 5.27e-164 508
MS.gene054892.t1 AT1G27770 40.759 606 327 11 3 600 111 692 2.82e-117 382
MS.gene054892.t1 AT1G27770 56.958 309 128 2 622 925 635 943 8.36e-112 367
MS.gene054892.t1 AT5G53010 35.093 644 395 7 1 642 153 775 6.24e-112 363
MS.gene054892.t1 AT1G07810 31.523 847 484 22 31 806 47 868 5.21e-106 354
MS.gene054892.t1 AT1G07670 31.604 848 482 22 31 806 47 868 4.49e-105 351
MS.gene054892.t1 AT1G07670 31.604 848 482 22 31 806 47 868 4.49e-105 351
MS.gene054892.t1 AT4G00900 30.160 998 569 28 31 924 30 1003 1.57e-101 342
MS.gene054892.t1 AT4G00900 30.160 998 569 28 31 924 30 1003 1.57e-101 342
MS.gene054892.t1 AT1G10130 28.786 997 575 27 20 923 16 970 3.41e-94 320
MS.gene054892.t1 AT3G60330 24.288 737 424 24 31 745 37 661 1.30e-49 191
MS.gene054892.t1 AT3G60330 24.288 737 424 24 31 745 37 661 1.30e-49 191
MS.gene054892.t1 AT3G60330 24.152 737 425 24 31 745 37 661 2.92e-49 189
MS.gene054892.t1 AT3G60330 24.152 737 425 24 31 745 37 661 2.92e-49 189
MS.gene054892.t1 AT2G24520 24.473 711 443 19 31 737 16 636 1.26e-48 187
MS.gene054892.t1 AT2G24520 24.473 711 443 19 31 737 16 636 1.26e-48 187
MS.gene054892.t1 AT2G24520 24.473 711 443 19 31 737 79 699 1.52e-48 187
MS.gene054892.t1 AT1G17260 23.776 858 523 25 13 848 27 775 3.57e-48 186
MS.gene054892.t1 AT3G42640 24.561 741 420 25 31 745 37 664 3.74e-47 183
MS.gene054892.t1 AT2G18960 26.010 619 351 16 131 737 67 590 3.31e-44 173
MS.gene054892.t1 AT2G18960 26.010 619 351 16 131 737 67 590 3.31e-44 173
MS.gene054892.t1 AT2G18960 26.010 619 351 16 131 737 131 654 5.65e-44 173
MS.gene054892.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene054892.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene054892.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene054892.t1 AT2G07560 23.481 724 448 22 31 745 37 663 6.96e-43 169
MS.gene054892.t1 AT4G30190 23.977 709 435 18 38 737 41 654 8.65e-43 169
MS.gene054892.t1 AT1G80660 23.731 729 441 23 31 745 39 666 1.48e-42 168
MS.gene054892.t1 AT1G80660 23.731 729 441 23 31 745 39 666 1.60e-42 168
MS.gene054892.t1 AT5G62670 24.214 636 376 20 131 754 135 676 1.65e-42 168
MS.gene054892.t1 AT1G80660 23.731 729 441 23 31 745 39 666 2.14e-42 168
MS.gene054892.t1 AT1G80660 25.080 626 363 20 131 745 7 537 1.09e-41 165
MS.gene054892.t1 AT3G47950 24.111 647 363 21 131 754 139 680 1.17e-41 166
MS.gene054892.t1 AT3G47950 24.111 647 363 21 131 754 139 680 1.17e-41 166
MS.gene054892.t1 AT4G30190 23.004 739 438 19 38 737 41 687 2.56e-38 155
MS.gene054892.t1 AT2G24520 25.173 433 268 9 305 737 17 393 3.01e-33 137
MS.gene054892.t1 AT5G57350 25.282 443 255 12 305 737 17 393 2.00e-30 129
MS.gene054892.t1 AT4G11730 23.251 486 303 13 94 575 92 511 8.45e-22 102
MS.gene054892.t1 AT1G63440 31.892 185 92 3 558 742 787 937 6.46e-19 93.2
MS.gene054892.t1 AT5G23630 22.117 737 422 24 30 687 166 829 3.19e-18 90.9
MS.gene054892.t1 AT5G44790 31.892 185 92 2 558 742 798 948 2.40e-17 87.8
MS.gene054892.t1 AT4G30110 27.895 190 106 3 555 744 508 666 5.26e-16 83.6
MS.gene054892.t1 AT4G30110 27.895 190 106 3 555 744 508 666 5.26e-16 83.6
MS.gene054892.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3
MS.gene054892.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3
MS.gene054892.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3

Find 176 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGTTTCTTGGAATTAT+TGG 0.097609 7.3:+15371497 MS.gene054892:CDS
GTTGAAACTGAATAAATTTC+TGG 0.116163 7.3:-15371067 None:intergenic
TAACAACAGTTCAACTTCTT+TGG 0.173261 7.3:+15371156 MS.gene054892:CDS
GTTGGGCTCCCTAAAATTTC+AGG 0.196891 7.3:-15370135 None:intergenic
AGAAGTTGAACTGTTGTTAA+AGG 0.219340 7.3:-15371152 None:intergenic
GACGATATCGGAACTTTCTT+TGG 0.231369 7.3:-15370976 None:intergenic
TTGAAGTCCTTAACTGAGTT+TGG 0.249267 7.3:+15368902 MS.gene054892:CDS
TCTTTGGGTGAATCTCATTA+TGG 0.261465 7.3:+15371172 MS.gene054892:CDS
AGCTGATATAGGACTTTCTA+TGG 0.273764 7.3:+15370932 MS.gene054892:CDS
ATGTGGGCAGTATTAGATTT+AGG 0.276374 7.3:+15370174 MS.gene054892:CDS
ACTTTCAGCTTGTGAAACTA+TGG 0.298547 7.3:+15369912 MS.gene054892:CDS
ACTTGTTTCTTGGAATTATT+GGG 0.300596 7.3:+15371498 MS.gene054892:CDS
AGAGGCGCGGTTCGACCTAT+TGG 0.309301 7.3:-15371257 None:intergenic
GCTGGTCTTTCCCTTGGTTT+TGG 0.316343 7.3:+15369115 MS.gene054892:CDS
TTCTTCTAGTGTTGTTAATT+CGG 0.316776 7.3:+15369674 MS.gene054892:CDS
TTTATTGCAGCAGTTTCTTC+TGG 0.323673 7.3:+15371122 MS.gene054892:CDS
AACAACAGTTCAACTTCTTT+GGG 0.329161 7.3:+15371157 MS.gene054892:CDS
CTTTGGCGACTTCGGTTCCT+TGG 0.332634 7.3:-15370959 None:intergenic
TGGAACAACTCAAGAACTTT+TGG 0.332942 7.3:-15370054 None:intergenic
CTTCCAATGATTCCCTTTGT+TGG 0.333542 7.3:-15368962 None:intergenic
ACAAAATGTAAAAGACCTTT+TGG 0.340140 7.3:-15369046 None:intergenic
AACGAAGTGGTGTTGCTATA+AGG 0.341059 7.3:+15370265 MS.gene054892:CDS
ACATGATGAGAAAGGGAATA+AGG 0.342848 7.3:+15369714 MS.gene054892:CDS
TCCACAGCTTTCTTAGTGTT+TGG 0.343135 7.3:-15370600 None:intergenic
ATTCATAACATCGTTTATAT+CGG 0.348604 7.3:-15369755 None:intergenic
ATCATTCTTCTTGTTTGTGC+TGG 0.353362 7.3:+15369097 MS.gene054892:CDS
TTTCCAACAAAGGGAATCAT+TGG 0.361980 7.3:+15368959 MS.gene054892:CDS
TATTGAGTCCTATCCCTTGT+TGG 0.366939 7.3:-15370074 None:intergenic
GAAGGTGTTGGACATGTTCT+TGG 0.367950 7.3:+15368932 MS.gene054892:CDS
CACATAATGTTTGTAATAAG+AGG 0.371774 7.3:-15371275 None:intergenic
AAAGTTGAAGTTGTGAGAAA+TGG 0.379054 7.3:+15369283 MS.gene054892:CDS
TTTCTCATCATGTGAGTTAC+CGG 0.383047 7.3:-15369704 None:intergenic
TTCTTAGTGTTTGGTCTGCA+TGG 0.388331 7.3:-15370591 None:intergenic
GTCCACTTGCAACGAATAAC+CGG 0.388586 7.3:-15369401 None:intergenic
AAGATTAACATGGGAGCAAT+GGG 0.392316 7.3:+15371580 MS.gene054892:CDS
TGAGTATAGCTTTCTCCGTT+GGG 0.404152 7.3:-15370152 None:intergenic
GTTTGTGCTGGTCTTTCCCT+TGG 0.406959 7.3:+15369109 MS.gene054892:CDS
ACTGAGTTTGGAGGAGTTGA+AGG 0.409047 7.3:+15368914 MS.gene054892:CDS
CATCAAATGCTTAGAGAAGA+TGG 0.409715 7.3:+15370534 MS.gene054892:CDS
CATCCCTGAGGGTTTGCCAT+TGG 0.412027 7.3:+15369825 MS.gene054892:CDS
AGTTGAATTCGTTGAAAACT+TGG 0.412550 7.3:-15371427 None:intergenic
TCCTTAGCAGTTCCACCATC+AGG 0.413653 7.3:-15371541 None:intergenic
GAGCAATGGGGAATTTGTAT+TGG 0.414811 7.3:+15371593 MS.gene054892:CDS
CTTGGAACATTTCCAACAAA+GGG 0.418051 7.3:+15368950 MS.gene054892:CDS
TTGGAATTGCAGTTGTTTCA+TGG 0.420704 7.3:+15371612 MS.gene054892:CDS
TCGAGACGGCTCGAGTTGTT+CGG 0.422005 7.3:+15368998 MS.gene054892:CDS
ATCAATCTTCAATGTAAGTA+AGG 0.423054 7.3:+15371364 MS.gene054892:CDS
AAGGAAGGTTTATCTGAAAC+AGG 0.426540 7.3:-15371662 None:intergenic
TTCAAGACCAAGACAAAACT+TGG 0.430220 7.3:-15369998 None:intergenic
GATCATATAATCAATATCTT+CGG 0.433658 7.3:-15370493 None:intergenic
TATGGATACACTAGGTGCTT+TGG 0.436284 7.3:+15371190 MS.gene054892:CDS
CCATCAAAAGTTTGTCCATA+GGG 0.437671 7.3:-15370833 None:intergenic
GAAGATGGATTGACATTGCT+TGG 0.448536 7.3:+15370549 MS.gene054892:CDS
CCAGGGGAAGGTTGGTATGA+AGG 0.449354 7.3:+15369154 MS.gene054892:CDS
GAGAAACTTTATGTATTTGA+AGG 0.449643 7.3:+15371461 MS.gene054892:CDS
GGAACTTTCTTTGGCGACTT+CGG 0.449820 7.3:-15370967 None:intergenic
ACAACAGCGTTCACGTGCAT+TGG 0.450477 7.3:+15370301 MS.gene054892:CDS
ACCTCTTCGATTGGAAAGGT+TGG 0.454559 7.3:+15369631 MS.gene054892:CDS
AACTCCTCCAAACTCAGTTA+AGG 0.459202 7.3:-15368909 None:intergenic
AATAATGATCATGCAAATGC+TGG 0.461039 7.3:+15370720 MS.gene054892:CDS
GTTATCTGCACTGATAAAAC+AGG 0.462331 7.3:+15369946 MS.gene054892:CDS
ATGAGTATAGCTTTCTCCGT+TGG 0.465674 7.3:-15370153 None:intergenic
ATATTGATTATATGATCAAA+AGG 0.466009 7.3:+15370499 MS.gene054892:CDS
CTATACAGAGGAAGAGAGAA+TGG 0.471313 7.3:+15370773 MS.gene054892:CDS
GCCTTAAAAGAAGCTGATAT+AGG 0.472466 7.3:+15370921 MS.gene054892:CDS
ACAGCCAATGGCAAACCCTC+AGG 0.480432 7.3:-15369829 None:intergenic
GGGATAGGACTCAATACAAC+TGG 0.480556 7.3:+15370081 MS.gene054892:CDS
AAAGATTAACATGGGAGCAA+TGG 0.480899 7.3:+15371579 MS.gene054892:CDS
AAAATTGAGAGAACCATTCA+AGG 0.484847 7.3:+15370414 MS.gene054892:CDS
CTTCCTTCAGTTATACTAAG+TGG 0.485117 7.3:+15371678 MS.gene054892:CDS
TTTGGAGGAGTTGAAGGTGT+TGG 0.486880 7.3:+15368920 MS.gene054892:CDS
CTCTTATTACAAACATTATG+TGG 0.489817 7.3:+15371276 MS.gene054892:CDS
TACTCCGTTCTTCTTCGTCA+AGG 0.493088 7.3:-15370392 None:intergenic
AAGTCCTTAACTGAGTTTGG+AGG 0.494300 7.3:+15368905 MS.gene054892:CDS
GTGCAATGCTTAAGAAAGAA+AGG 0.495384 7.3:+15370855 MS.gene054892:CDS
GCTTGGTATCGTTGGCCTCA+AGG 0.496620 7.3:+15370566 MS.gene054892:CDS
GACAAGTTAACCTCTTCGAT+TGG 0.496811 7.3:+15369622 MS.gene054892:CDS
CAATGTAAGTAAGGAGGTAA+AGG 0.498336 7.3:+15371373 MS.gene054892:CDS
AGTTAAATGTTTCAACATGA+AGG 0.506064 7.3:-15370233 None:intergenic
ACTCCGTTCTTCTTCGTCAA+GGG 0.507433 7.3:-15370391 None:intergenic
GGTCATGTAGTTGCGGTCAC+AGG 0.513331 7.3:+15370876 MS.gene054892:CDS
ACTAGCAGCCATACCTTGAA+TGG 0.515056 7.3:-15370427 None:intergenic
GGCAGTATTAGATTTAGGTA+TGG 0.515789 7.3:+15370179 MS.gene054892:CDS
GGTATAAAAGAACATGGACC+AGG 0.517553 7.3:+15369136 MS.gene054892:CDS
CTTTCAGCTTGTGAAACTAT+GGG 0.519163 7.3:+15369913 MS.gene054892:CDS
AACATGGACCAGGGGAAGGT+TGG 0.519256 7.3:+15369146 MS.gene054892:CDS
TGAGAGAACCATTCAAGGTA+TGG 0.519915 7.3:+15370419 MS.gene054892:CDS
TTGTTAATTCGGTATTTCAC+CGG 0.522783 7.3:+15369685 MS.gene054892:CDS
GAGTTGTTCCAACAAGGGAT+AGG 0.522823 7.3:+15370066 MS.gene054892:CDS
GTGGAAACTTGCAAAGCTGC+AGG 0.523844 7.3:+15370618 MS.gene054892:CDS
TCCTGATGGTGGAACTGCTA+AGG 0.525298 7.3:+15371540 MS.gene054892:CDS
AGTGTCTATAAGCCTCCATC+AGG 0.527925 7.3:+15370105 MS.gene054892:CDS
CCTTCATACCAACCTTCCCC+TGG 0.528123 7.3:-15369154 None:intergenic
TATTGATTATATGATCAAAA+GGG 0.529809 7.3:+15370500 MS.gene054892:CDS
GATATGAAGCTTGAGCTAGA+AGG 0.531218 7.3:-15371304 None:intergenic
TTCCTTCAGTTATACTAAGT+GGG 0.531273 7.3:+15371679 MS.gene054892:CDS
GTGGTCGTTGCCATCCCTGA+GGG 0.533218 7.3:+15369814 MS.gene054892:CDS
AGAAACTTTATGTATTTGAA+GGG 0.534132 7.3:+15371462 MS.gene054892:CDS
TTGACATTGCTTGGTATCGT+TGG 0.535773 7.3:+15370558 MS.gene054892:CDS
TATTGTTCTTCAAATCCTGA+TGG 0.536690 7.3:+15371526 MS.gene054892:CDS
GTTAACCTCTTCGATTGGAA+AGG 0.543977 7.3:+15369627 MS.gene054892:CDS
TTACTCCATGAAAAGAATGA+TGG 0.544747 7.3:+15369867 MS.gene054892:CDS
AAAGGGAATAAGGAATTTCG+AGG 0.549749 7.3:+15369724 MS.gene054892:CDS
CGATAACATATTCACTGCTA+AGG 0.549853 7.3:+15370665 MS.gene054892:CDS
TTGTCGAGGCGTGCTTGTAA+CGG 0.550021 7.3:-15369604 None:intergenic
GATGTTGTGTCTCTCAAGAT+TGG 0.550678 7.3:+15369346 MS.gene054892:CDS
TCTTGGAACATTTCCAACAA+AGG 0.551511 7.3:+15368949 MS.gene054892:CDS
GTTCTTGAGTTGTTCCAACA+AGG 0.551602 7.3:+15370060 MS.gene054892:CDS
GTGGACGAATCTAGCATGAC+AGG 0.554098 7.3:+15369418 MS.gene054892:CDS
GGTAACTCACATGATGAGAA+AGG 0.554188 7.3:+15369706 MS.gene054892:CDS
GGTGATCAAATTCCAGCTGA+TGG 0.555778 7.3:+15369367 MS.gene054892:CDS
ATCCGGTTATTCGTTGCAAG+TGG 0.559045 7.3:+15369399 MS.gene054892:CDS
TTCTTGAGTTGTTCCAACAA+GGG 0.564125 7.3:+15370061 MS.gene054892:CDS
CTGATACAGAAAGATTAACA+TGG 0.570100 7.3:+15371570 MS.gene054892:CDS
GTCGTCTAAGATGACGATAT+CGG 0.571011 7.3:-15370988 None:intergenic
CAGATGCTTGTAACATCTGT+GGG 0.571667 7.3:+15369520 MS.gene054892:CDS
GTAACTCACATGATGAGAAA+GGG 0.572303 7.3:+15369707 MS.gene054892:CDS
ACAAACTATATTGATAGTAA+TGG 0.572318 7.3:+15370357 MS.gene054892:CDS
AGAGTGAGTGTCACAGCCAA+TGG 0.572339 7.3:-15369841 None:intergenic
CGAATTCAACTCAAGAAGCA+TGG 0.573309 7.3:+15371439 MS.gene054892:CDS
TGTTCTTCAAATCCTGATGG+TGG 0.574137 7.3:+15371529 MS.gene054892:CDS
GGGATGATCTTGCCATCACT+CGG 0.576371 7.3:-15370812 None:intergenic
AAAGAACATGGACCAGGGGA+AGG 0.576921 7.3:+15369142 MS.gene054892:CDS
GATGGCAAGATCATCCCCTA+TGG 0.578067 7.3:+15370818 MS.gene054892:CDS
GGACTTTCTATGGGAATCCA+AGG 0.578565 7.3:+15370942 MS.gene054892:CDS
ACCATCAAAAGTTTGTCCAT+AGG 0.578755 7.3:-15370834 None:intergenic
GTTGAAATTAAGATGATCAC+CGG 0.583984 7.3:+15370642 MS.gene054892:CDS
AGCGTTCACGTGCATTGGAA+AGG 0.585112 7.3:+15370306 MS.gene054892:CDS
AGCAGTGAATATGTTATCGC+CGG 0.592625 7.3:-15370661 None:intergenic
CAATGGCAAACCCTCAGGGA+TGG 0.594427 7.3:-15369824 None:intergenic
CAATAATTCCAAGAAACAAG+TGG 0.594925 7.3:-15371496 None:intergenic
TGCGGCTGCAGTCACTATTG+TGG 0.595274 7.3:+15369795 MS.gene054892:CDS
AGCTTTACTAAGCAAGCAAG+TGG 0.597015 7.3:-15371635 None:intergenic
CTTTGGCACTAGCAACAGAA+AGG 0.597226 7.3:+15371207 MS.gene054892:CDS
AAAGAAAGGTCATGTAGTTG+CGG 0.598089 7.3:+15370869 MS.gene054892:CDS
CGGAGAAAGCTATACTCATG+TGG 0.599631 7.3:+15370157 MS.gene054892:CDS
TCCGGCGCAAAAGTTGTCGA+TGG 0.604642 7.3:+15369490 MS.gene054892:CDS
AACTCAGAAAAGAAACGAAG+TGG 0.604819 7.3:+15370252 MS.gene054892:CDS
AGTCCCTTGACGAAGAAGAA+CGG 0.605537 7.3:+15370388 MS.gene054892:CDS
GCTGATATAGGACTTTCTAT+GGG 0.607580 7.3:+15370933 MS.gene054892:CDS
AACCCACTTAGTATAACTGA+AGG 0.608822 7.3:-15371681 None:intergenic
AGTCGATAAGATCCGAGTGA+TGG 0.608832 7.3:+15370800 MS.gene054892:CDS
TCGAAGAGGTTAACTTGTCG+AGG 0.612007 7.3:-15369618 None:intergenic
TCTCATTTGATTCAATGTCA+AGG 0.612008 7.3:-15369971 None:intergenic
TTAAAGGCTCAATCTCTACA+TGG 0.614114 7.3:-15369450 None:intergenic
TCAGGTTCAGATCCTGATGG+AGG 0.616155 7.3:-15370117 None:intergenic
GTAGTTGCGGTCACAGGCGA+CGG 0.616359 7.3:+15370882 MS.gene054892:CDS
AATCTTCAATGTAAGTAAGG+AGG 0.620069 7.3:+15371367 MS.gene054892:CDS
CAGCCAATGGCAAACCCTCA+GGG 0.622410 7.3:-15369828 None:intergenic
ATTTCAGGTTCAGATCCTGA+TGG 0.624957 7.3:-15370120 None:intergenic
ATTAGATTTAGGTATGGACA+TGG 0.627125 7.3:+15370185 MS.gene054892:CDS
TGTGGTCGTTGCCATCCCTG+AGG 0.627513 7.3:+15369813 MS.gene054892:CDS
TCCAACCTTTCCAATCGAAG+AGG 0.628030 7.3:-15369632 None:intergenic
GGAGAAAGCTATACTCATGT+GGG 0.631351 7.3:+15370158 MS.gene054892:CDS
AAGGCAATAGCAATAGAATG+TGG 0.631732 7.3:+15370684 MS.gene054892:CDS
AATGCTGGAGAAGTGGTTGA+AGG 0.633324 7.3:+15370735 MS.gene054892:CDS
TTGAAGTTGTGAGAAATGGA+AGG 0.633334 7.3:+15369287 MS.gene054892:CDS
GTATAAAAGAACATGGACCA+GGG 0.633871 7.3:+15369137 MS.gene054892:CDS
TCAGATGCTTGTAACATCTG+TGG 0.634658 7.3:+15369519 MS.gene054892:CDS
TTCTGTTGTGAGTATCGTTG+CGG 0.635865 7.3:+15369777 MS.gene054892:CDS
AATGTTTGTAATAAGAGGCG+CGG 0.641151 7.3:-15371270 None:intergenic
CATCAAAAGTTTGTCCATAG+GGG 0.646674 7.3:-15370832 None:intergenic
AATCTCATTATGGATACACT+AGG 0.650066 7.3:+15371182 MS.gene054892:CDS
GGGGAAGGTTGGTATGAAGG+TGG 0.653350 7.3:+15369157 MS.gene054892:CDS
ACCAAACACTAAGAAAGCTG+TGG 0.654204 7.3:+15370599 MS.gene054892:CDS
TCATGCAAATGCTGGAGAAG+TGG 0.656322 7.3:+15370728 MS.gene054892:CDS
CACTTAGTATAACTGAAGGA+AGG 0.659297 7.3:-15371677 None:intergenic
AATGATGGCAGATCATGCTA+TGG 0.667862 7.3:+15369882 MS.gene054892:CDS
TGATACAGAAAGATTAACAT+GGG 0.677705 7.3:+15371571 MS.gene054892:CDS
TATAAAAGAACATGGACCAG+GGG 0.683444 7.3:+15369138 MS.gene054892:CDS
GTGCAGATGATATTTCGAGA+CGG 0.692212 7.3:+15368984 MS.gene054892:CDS
ATATTGATAGTAATGGCGTG+AGG 0.714007 7.3:+15370364 MS.gene054892:CDS
TGAATTCAGAAACTATACAG+AGG 0.727231 7.3:+15370761 MS.gene054892:CDS
TTGGTCTGCATGGATCCTTG+AGG 0.732996 7.3:-15370581 None:intergenic
TGGCAGATCATGCTATGGTG+AGG 0.739078 7.3:+15369887 MS.gene054892:CDS
AGATTAACATGGGAGCAATG+GGG 0.752103 7.3:+15371581 MS.gene054892:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGATTATATGATCAAA+AGG + chr7.3:15370499-15370518 MS.gene054892:CDS 15.0%
!!! TATTGATTATATGATCAAAA+GGG + chr7.3:15370500-15370519 MS.gene054892:CDS 15.0%
!! AGAAACTTTATGTATTTGAA+GGG + chr7.3:15371462-15371481 MS.gene054892:CDS 20.0%
!! ATTCATAACATCGTTTATAT+CGG - chr7.3:15369758-15369777 None:intergenic 20.0%
!! GATCATATAATCAATATCTT+CGG - chr7.3:15370496-15370515 None:intergenic 20.0%
!!! ACAAACTATATTGATAGTAA+TGG + chr7.3:15370357-15370376 MS.gene054892:CDS 20.0%
! AGTTAAATGTTTCAACATGA+AGG - chr7.3:15370236-15370255 None:intergenic 25.0%
! ATCAATCTTCAATGTAAGTA+AGG + chr7.3:15371364-15371383 MS.gene054892:CDS 25.0%
! CACATAATGTTTGTAATAAG+AGG - chr7.3:15371278-15371297 None:intergenic 25.0%
! CTCTTATTACAAACATTATG+TGG + chr7.3:15371276-15371295 MS.gene054892:CDS 25.0%
! GAGAAACTTTATGTATTTGA+AGG + chr7.3:15371461-15371480 MS.gene054892:CDS 25.0%
! GTTGAAACTGAATAAATTTC+TGG - chr7.3:15371070-15371089 None:intergenic 25.0%
! TCAAAAATTGATATCTGTTG+AGG - chr7.3:15369313-15369332 None:intergenic 25.0%
! TGATACAGAAAGATTAACAT+GGG + chr7.3:15371571-15371590 MS.gene054892:CDS 25.0%
! TTAATGAAGAAAAAGCCAAT+AGG + chr7.3:15371242-15371261 MS.gene054892:CDS 25.0%
!! ACAAAATGTAAAAGACCTTT+TGG - chr7.3:15369049-15369068 None:intergenic 25.0%
!! ACTTGTTTCTTGGAATTATT+GGG + chr7.3:15371498-15371517 MS.gene054892:CDS 25.0%
!! ATCAATTTTTGATGTTCTTG+TGG + chr7.3:15369321-15369340 MS.gene054892:CDS 25.0%
!! TCAATTTTTGATGTTCTTGT+GGG + chr7.3:15369322-15369341 MS.gene054892:CDS 25.0%
!! TTCTTCATTAACTCTTTTGT+AGG - chr7.3:15371233-15371252 None:intergenic 25.0%
!! TTCTTCTAGTGTTGTTAATT+CGG + chr7.3:15369674-15369693 MS.gene054892:CDS 25.0%
!! TTCTTTTATACCAAAACCAA+GGG - chr7.3:15369128-15369147 None:intergenic 25.0%
AAAATTGAGAGAACCATTCA+AGG + chr7.3:15370414-15370433 MS.gene054892:CDS 30.0%
AAAGTTGAAGTTGTGAGAAA+TGG + chr7.3:15369283-15369302 MS.gene054892:CDS 30.0%
AACAAAAAAGGAGCTCTTAA+AGG - chr7.3:15369469-15369488 None:intergenic 30.0%
AACAACAGTTCAACTTCTTT+GGG + chr7.3:15371157-15371176 MS.gene054892:CDS 30.0%
AATAATGATCATGCAAATGC+TGG + chr7.3:15370720-15370739 MS.gene054892:CDS 30.0%
AATCTCATTATGGATACACT+AGG + chr7.3:15371182-15371201 MS.gene054892:CDS 30.0%
AATCTTCAATGTAAGTAAGG+AGG + chr7.3:15371367-15371386 MS.gene054892:CDS 30.0%
AGAAGTTGAACTGTTGTTAA+AGG - chr7.3:15371155-15371174 None:intergenic 30.0%
AGTTGAATTCGTTGAAAACT+TGG - chr7.3:15371430-15371449 None:intergenic 30.0%
ATTAGATTTAGGTATGGACA+TGG + chr7.3:15370185-15370204 MS.gene054892:CDS 30.0%
CAATAATTCCAAGAAACAAG+TGG - chr7.3:15371499-15371518 None:intergenic 30.0%
CTGATACAGAAAGATTAACA+TGG + chr7.3:15371570-15371589 MS.gene054892:CDS 30.0%
GTTGAAATTAAGATGATCAC+CGG + chr7.3:15370642-15370661 MS.gene054892:CDS 30.0%
TAACAACAGTTCAACTTCTT+TGG + chr7.3:15371156-15371175 MS.gene054892:CDS 30.0%
TATTGTTCTTCAAATCCTGA+TGG + chr7.3:15371526-15371545 MS.gene054892:CDS 30.0%
TCTCATTTGATTCAATGTCA+AGG - chr7.3:15369974-15369993 None:intergenic 30.0%
TGAATTCAGAAACTATACAG+AGG + chr7.3:15370761-15370780 MS.gene054892:CDS 30.0%
TTACTCCATGAAAAGAATGA+TGG + chr7.3:15369867-15369886 MS.gene054892:CDS 30.0%
TTCCTTCAGTTATACTAAGT+GGG + chr7.3:15371679-15371698 MS.gene054892:CDS 30.0%
TTGTTAATTCGGTATTTCAC+CGG + chr7.3:15369685-15369704 MS.gene054892:CDS 30.0%
! AAATGTAAAAGACCTTTTGG+TGG - chr7.3:15369046-15369065 None:intergenic 30.0%
! ATTCTGTTGCAACTGTTTTA+AGG + chr7.3:15371018-15371037 MS.gene054892:CDS 30.0%
! CACTTGTTTCTTGGAATTAT+TGG + chr7.3:15371497-15371516 MS.gene054892:CDS 30.0%
! CTTAAAAACCACTTGTTTCT+TGG + chr7.3:15371488-15371507 MS.gene054892:CDS 30.0%
! CTTCTGATTATGCAGTTTTA+TGG + chr7.3:15371338-15371357 MS.gene054892:CDS 30.0%
! GATCTGAACCTGAAATTTTA+GGG + chr7.3:15370127-15370146 MS.gene054892:CDS 30.0%
! GTTCTTTTATACCAAAACCA+AGG - chr7.3:15369129-15369148 None:intergenic 30.0%
! TCCTATATCAGCTTCTTTTA+AGG - chr7.3:15370925-15370944 None:intergenic 30.0%
! TGAAAACTTTTCCAATGCAA+TGG + chr7.3:15370029-15370048 MS.gene054892:CDS 30.0%
!! GGTTTTGGTATAAAAGAACA+TGG + chr7.3:15369130-15369149 MS.gene054892:CDS 30.0%
AAAGAAAGGTCATGTAGTTG+CGG + chr7.3:15370869-15370888 MS.gene054892:CDS 35.0%
AAAGATTAACATGGGAGCAA+TGG + chr7.3:15371579-15371598 MS.gene054892:CDS 35.0%
AAAGGGAATAAGGAATTTCG+AGG + chr7.3:15369724-15369743 MS.gene054892:CDS 35.0%
AACCCACTTAGTATAACTGA+AGG - chr7.3:15371684-15371703 None:intergenic 35.0%
AACTCAGAAAAGAAACGAAG+TGG + chr7.3:15370252-15370271 MS.gene054892:CDS 35.0%
AAGATTAACATGGGAGCAAT+GGG + chr7.3:15371580-15371599 MS.gene054892:CDS 35.0%
AAGGCAATAGCAATAGAATG+TGG + chr7.3:15370684-15370703 MS.gene054892:CDS 35.0%
AATGTTTGTAATAAGAGGCG+CGG - chr7.3:15371273-15371292 None:intergenic 35.0%
ACATGATGAGAAAGGGAATA+AGG + chr7.3:15369714-15369733 MS.gene054892:CDS 35.0%
ACCATCAAAAGTTTGTCCAT+AGG - chr7.3:15370837-15370856 None:intergenic 35.0%
ACTTTCAGCTTGTGAAACTA+TGG + chr7.3:15369912-15369931 MS.gene054892:CDS 35.0%
AGCTGATATAGGACTTTCTA+TGG + chr7.3:15370932-15370951 MS.gene054892:CDS 35.0%
ATGTGGGCAGTATTAGATTT+AGG + chr7.3:15370174-15370193 MS.gene054892:CDS 35.0%
CAATGTAAGTAAGGAGGTAA+AGG + chr7.3:15371373-15371392 MS.gene054892:CDS 35.0%
CACTTAGTATAACTGAAGGA+AGG - chr7.3:15371680-15371699 None:intergenic 35.0%
CATCAAAAGTTTGTCCATAG+GGG - chr7.3:15370835-15370854 None:intergenic 35.0%
CATCAAATGCTTAGAGAAGA+TGG + chr7.3:15370534-15370553 MS.gene054892:CDS 35.0%
CCATCAAAAGTTTGTCCATA+GGG - chr7.3:15370836-15370855 None:intergenic 35.0%
CGATAACATATTCACTGCTA+AGG + chr7.3:15370665-15370684 MS.gene054892:CDS 35.0%
CTTCCTTCAGTTATACTAAG+TGG + chr7.3:15371678-15371697 MS.gene054892:CDS 35.0%
CTTGGAACATTTCCAACAAA+GGG + chr7.3:15368950-15368969 MS.gene054892:CDS 35.0%
CTTTCAGCTTGTGAAACTAT+GGG + chr7.3:15369913-15369932 MS.gene054892:CDS 35.0%
GATAAAAATACTCCATCAGC+TGG - chr7.3:15369382-15369401 None:intergenic 35.0%
GCCTTAAAAGAAGCTGATAT+AGG + chr7.3:15370921-15370940 MS.gene054892:CDS 35.0%
GCTGATATAGGACTTTCTAT+GGG + chr7.3:15370933-15370952 MS.gene054892:CDS 35.0%
GGCAGTATTAGATTTAGGTA+TGG + chr7.3:15370179-15370198 MS.gene054892:CDS 35.0%
GTAACTCACATGATGAGAAA+GGG + chr7.3:15369707-15369726 MS.gene054892:CDS 35.0%
GTATAAAAGAACATGGACCA+GGG + chr7.3:15369137-15369156 MS.gene054892:CDS 35.0%
GTGCAATGCTTAAGAAAGAA+AGG + chr7.3:15370855-15370874 MS.gene054892:CDS 35.0%
TATAAAAGAACATGGACCAG+GGG + chr7.3:15369138-15369157 MS.gene054892:CDS 35.0%
TCTTGGAACATTTCCAACAA+AGG + chr7.3:15368949-15368968 MS.gene054892:CDS 35.0%
TCTTTGGGTGAATCTCATTA+TGG + chr7.3:15371172-15371191 MS.gene054892:CDS 35.0%
TGTGGGAAAAAACACATCAT+GGG + chr7.3:15369537-15369556 MS.gene054892:CDS 35.0%
TTAAAGGCTCAATCTCTACA+TGG - chr7.3:15369453-15369472 None:intergenic 35.0%
TTCAAGACCAAGACAAAACT+TGG - chr7.3:15370001-15370020 None:intergenic 35.0%
TTGAAGTCCTTAACTGAGTT+TGG + chr7.3:15368902-15368921 MS.gene054892:CDS 35.0%
TTGAAGTTGTGAGAAATGGA+AGG + chr7.3:15369287-15369306 MS.gene054892:CDS 35.0%
TTTATTGCAGCAGTTTCTTC+TGG + chr7.3:15371122-15371141 MS.gene054892:CDS 35.0%
TTTCCAACAAAGGGAATCAT+TGG + chr7.3:15368959-15368978 MS.gene054892:CDS 35.0%
TTTCTCATCATGTGAGTTAC+CGG - chr7.3:15369707-15369726 None:intergenic 35.0%
! AAGGAAGGTTTATCTGAAAC+AGG - chr7.3:15371665-15371684 None:intergenic 35.0%
! ATATTGATAGTAATGGCGTG+AGG + chr7.3:15370364-15370383 MS.gene054892:CDS 35.0%
! ATCATTCTTCTTGTTTGTGC+TGG + chr7.3:15369097-15369116 MS.gene054892:CDS 35.0%
! ATCTGCCATCATTCTTTTCA+TGG - chr7.3:15369875-15369894 None:intergenic 35.0%
! GGATCTGAACCTGAAATTTT+AGG + chr7.3:15370126-15370145 MS.gene054892:CDS 35.0%
! GTTATCTGCACTGATAAAAC+AGG + chr7.3:15369946-15369965 MS.gene054892:CDS 35.0%
! TCTAGCAGTTTTTCTTGTTG+TGG + chr7.3:15369189-15369208 MS.gene054892:CDS 35.0%
! TGGAACAACTCAAGAACTTT+TGG - chr7.3:15370057-15370076 None:intergenic 35.0%
! TTCTTGAGTTGTTCCAACAA+GGG + chr7.3:15370061-15370080 MS.gene054892:CDS 35.0%
! TTGGAATTGCAGTTGTTTCA+TGG + chr7.3:15371612-15371631 MS.gene054892:CDS 35.0%
!! ATGTATTGCTTTTGCTCACA+CGG + chr7.3:15370458-15370477 MS.gene054892:CDS 35.0%
!! GCTGATGGAGTATTTTTATC+CGG + chr7.3:15369382-15369401 MS.gene054892:CDS 35.0%
!!! ATATCAGCTTCTTTTAAGGC+AGG - chr7.3:15370921-15370940 None:intergenic 35.0%
!!! TGTTGCAACTGTTTTAAGGT+GGG + chr7.3:15371022-15371041 MS.gene054892:CDS 35.0%
AACTCCTCCAAACTCAGTTA+AGG - chr7.3:15368912-15368931 None:intergenic 40.0%
AAGTCCTTAACTGAGTTTGG+AGG + chr7.3:15368905-15368924 MS.gene054892:CDS 40.0%
AATGATGGCAGATCATGCTA+TGG + chr7.3:15369882-15369901 MS.gene054892:CDS 40.0%
ACCAAACACTAAGAAAGCTG+TGG + chr7.3:15370599-15370618 MS.gene054892:CDS 40.0%
AGATTAACATGGGAGCAATG+GGG + chr7.3:15371581-15371600 MS.gene054892:CDS 40.0%
AGCAGTGAATATGTTATCGC+CGG - chr7.3:15370664-15370683 None:intergenic 40.0%
AGCTTTACTAAGCAAGCAAG+TGG - chr7.3:15371638-15371657 None:intergenic 40.0%
ATGAGTATAGCTTTCTCCGT+TGG - chr7.3:15370156-15370175 None:intergenic 40.0%
CAGATGCTTGTAACATCTGT+GGG + chr7.3:15369520-15369539 MS.gene054892:CDS 40.0%
CGAATTCAACTCAAGAAGCA+TGG + chr7.3:15371439-15371458 MS.gene054892:CDS 40.0%
CTATACAGAGGAAGAGAGAA+TGG + chr7.3:15370773-15370792 MS.gene054892:CDS 40.0%
CTGTGGGAAAAAACACATCA+TGG + chr7.3:15369536-15369555 MS.gene054892:CDS 40.0%
CTTCCAATGATTCCCTTTGT+TGG - chr7.3:15368965-15368984 None:intergenic 40.0%
GACAAGTTAACCTCTTCGAT+TGG + chr7.3:15369622-15369641 MS.gene054892:CDS 40.0%
GACGATATCGGAACTTTCTT+TGG - chr7.3:15370979-15370998 None:intergenic 40.0%
GAGCAATGGGGAATTTGTAT+TGG + chr7.3:15371593-15371612 MS.gene054892:CDS 40.0%
GATATGAAGCTTGAGCTAGA+AGG - chr7.3:15371307-15371326 None:intergenic 40.0%
GATGTTGTGTCTCTCAAGAT+TGG + chr7.3:15369346-15369365 MS.gene054892:CDS 40.0%
GGAGAAAGCTATACTCATGT+GGG + chr7.3:15370158-15370177 MS.gene054892:CDS 40.0%
GGTAACTCACATGATGAGAA+AGG + chr7.3:15369706-15369725 MS.gene054892:CDS 40.0%
GGTATAAAAGAACATGGACC+AGG + chr7.3:15369136-15369155 MS.gene054892:CDS 40.0%
GTGCAGATGATATTTCGAGA+CGG + chr7.3:15368984-15369003 MS.gene054892:CDS 40.0%
GTGGGAAAAAACACATCATG+GGG + chr7.3:15369538-15369557 MS.gene054892:CDS 40.0%
GTTAACCTCTTCGATTGGAA+AGG + chr7.3:15369627-15369646 MS.gene054892:CDS 40.0%
TACAAAAAGCCACCACCAAA+AGG + chr7.3:15369031-15369050 MS.gene054892:CDS 40.0%
TATGGATACACTAGGTGCTT+TGG + chr7.3:15371190-15371209 MS.gene054892:CDS 40.0%
TATTGAGTCCTATCCCTTGT+TGG - chr7.3:15370077-15370096 None:intergenic 40.0%
TCAGATGCTTGTAACATCTG+TGG + chr7.3:15369519-15369538 MS.gene054892:CDS 40.0%
TCCACAGCTTTCTTAGTGTT+TGG - chr7.3:15370603-15370622 None:intergenic 40.0%
TGAGAGAACCATTCAAGGTA+TGG + chr7.3:15370419-15370438 MS.gene054892:CDS 40.0%
TGAGTATAGCTTTCTCCGTT+GGG - chr7.3:15370155-15370174 None:intergenic 40.0%
TGTTCTTCAAATCCTGATGG+TGG + chr7.3:15371529-15371548 MS.gene054892:CDS 40.0%
TTCTTAGTGTTTGGTCTGCA+TGG - chr7.3:15370594-15370613 None:intergenic 40.0%
TTGACATTGCTTGGTATCGT+TGG + chr7.3:15370558-15370577 MS.gene054892:CDS 40.0%
! CCCTATGGACAAACTTTTGA+TGG + chr7.3:15370833-15370852 MS.gene054892:CDS 40.0%
! GTCGTCTAAGATGACGATAT+CGG - chr7.3:15370991-15371010 None:intergenic 40.0%
! GTTCTTGAGTTGTTCCAACA+AGG + chr7.3:15370060-15370079 MS.gene054892:CDS 40.0%
! TGTAAAAGACCTTTTGGTGG+TGG - chr7.3:15369043-15369062 None:intergenic 40.0%
! TTCTGTTGTGAGTATCGTTG+CGG + chr7.3:15369777-15369796 MS.gene054892:CDS 40.0%
!! AACGAAGTGGTGTTGCTATA+AGG + chr7.3:15370265-15370284 MS.gene054892:CDS 40.0%
!! AGAGTGACCAAGTTTTGTCT+TGG + chr7.3:15369991-15370010 MS.gene054892:CDS 40.0%
!! ATTTCAGGTTCAGATCCTGA+TGG - chr7.3:15370123-15370142 None:intergenic 40.0%
!! GAAGATGGATTGACATTGCT+TGG + chr7.3:15370549-15370568 MS.gene054892:CDS 40.0%
!! TGAAATTTTAGGGAGCCCAA+CGG + chr7.3:15370137-15370156 MS.gene054892:CDS 40.0%
!!! AACTTTTGGTGCCATTGCAT+TGG - chr7.3:15370043-15370062 None:intergenic 40.0%
!!! AGAGCTCCTTTTTTGTTGTC+CGG + chr7.3:15369472-15369491 MS.gene054892:CDS 40.0%
!!! CTGTTGCAACTGTTTTAAGG+TGG + chr7.3:15371021-15371040 MS.gene054892:CDS 40.0%
!!! GTTGCAACTGTTTTAAGGTG+GGG + chr7.3:15371023-15371042 MS.gene054892:CDS 40.0%
AATGCTGGAGAAGTGGTTGA+AGG + chr7.3:15370735-15370754 MS.gene054892:CDS 45.0%
ACCTCTTCGATTGGAAAGGT+TGG + chr7.3:15369631-15369650 MS.gene054892:CDS 45.0%
ACTAGCAGCCATACCTTGAA+TGG - chr7.3:15370430-15370449 None:intergenic 45.0%
ACTCCGTTCTTCTTCGTCAA+GGG - chr7.3:15370394-15370413 None:intergenic 45.0%
ACTGAGTTTGGAGGAGTTGA+AGG + chr7.3:15368914-15368933 MS.gene054892:CDS 45.0%
AGTCCCTTGACGAAGAAGAA+CGG + chr7.3:15370388-15370407 MS.gene054892:CDS 45.0%
AGTCGATAAGATCCGAGTGA+TGG + chr7.3:15370800-15370819 MS.gene054892:CDS 45.0%
AGTGTCTATAAGCCTCCATC+AGG + chr7.3:15370105-15370124 MS.gene054892:CDS 45.0%
ATCCGGTTATTCGTTGCAAG+TGG + chr7.3:15369399-15369418 MS.gene054892:CDS 45.0%
CGGAGAAAGCTATACTCATG+TGG + chr7.3:15370157-15370176 MS.gene054892:CDS 45.0%
CTTTGGCACTAGCAACAGAA+AGG + chr7.3:15371207-15371226 MS.gene054892:CDS 45.0%
GAGTTGTTCCAACAAGGGAT+AGG + chr7.3:15370066-15370085 MS.gene054892:CDS 45.0%
GGAACTTTCTTTGGCGACTT+CGG - chr7.3:15370970-15370989 None:intergenic 45.0%
GGACTTTCTATGGGAATCCA+AGG + chr7.3:15370942-15370961 MS.gene054892:CDS 45.0%
GGGATAGGACTCAATACAAC+TGG + chr7.3:15370081-15370100 MS.gene054892:CDS 45.0%
GGTGATCAAATTCCAGCTGA+TGG + chr7.3:15369367-15369386 MS.gene054892:CDS 45.0%
GTCCACTTGCAACGAATAAC+CGG - chr7.3:15369404-15369423 None:intergenic 45.0%
GTTGGGCTCCCTAAAATTTC+AGG - chr7.3:15370138-15370157 None:intergenic 45.0%
TACTCCGTTCTTCTTCGTCA+AGG - chr7.3:15370395-15370414 None:intergenic 45.0%
TCATGCAAATGCTGGAGAAG+TGG + chr7.3:15370728-15370747 MS.gene054892:CDS 45.0%
TCCAACCTTTCCAATCGAAG+AGG - chr7.3:15369635-15369654 None:intergenic 45.0%
TTTGCGCCGGACAACAAAAA+AGG - chr7.3:15369481-15369500 None:intergenic 45.0%
! TTTGGAGGAGTTGAAGGTGT+TGG + chr7.3:15368920-15368939 MS.gene054892:CDS 45.0%
!! GAAGGTGTTGGACATGTTCT+TGG + chr7.3:15368932-15368951 MS.gene054892:CDS 45.0%
!! TCGAAGAGGTTAACTTGTCG+AGG - chr7.3:15369621-15369640 None:intergenic 45.0%
AAAGAACATGGACCAGGGGA+AGG + chr7.3:15369142-15369161 MS.gene054892:CDS 50.0%
ACAACAGCGTTCACGTGCAT+TGG + chr7.3:15370301-15370320 MS.gene054892:CDS 50.0%
AGAGTGAGTGTCACAGCCAA+TGG - chr7.3:15369844-15369863 None:intergenic 50.0%
AGCGTTCACGTGCATTGGAA+AGG + chr7.3:15370306-15370325 MS.gene054892:CDS 50.0%
GATGGCAAGATCATCCCCTA+TGG + chr7.3:15370818-15370837 MS.gene054892:CDS 50.0%
GGGATGATCTTGCCATCACT+CGG - chr7.3:15370815-15370834 None:intergenic 50.0%
GTGGAAACTTGCAAAGCTGC+AGG + chr7.3:15370618-15370637 MS.gene054892:CDS 50.0%
GTGGACGAATCTAGCATGAC+AGG + chr7.3:15369418-15369437 MS.gene054892:CDS 50.0%
TCAGGTTCAGATCCTGATGG+AGG - chr7.3:15370120-15370139 None:intergenic 50.0%
TCCTTAGCAGTTCCACCATC+AGG - chr7.3:15371544-15371563 None:intergenic 50.0%
TGGCAGATCATGCTATGGTG+AGG + chr7.3:15369887-15369906 MS.gene054892:CDS 50.0%
TTGGTCTGCATGGATCCTTG+AGG - chr7.3:15370584-15370603 None:intergenic 50.0%
TTGTCGAGGCGTGCTTGTAA+CGG - chr7.3:15369607-15369626 None:intergenic 50.0%
! TCCATCGACAACTTTTGCGC+CGG - chr7.3:15369494-15369513 None:intergenic 50.0%
!! GTTTGTGCTGGTCTTTCCCT+TGG + chr7.3:15369109-15369128 MS.gene054892:CDS 50.0%
!! TCCTGATGGTGGAACTGCTA+AGG + chr7.3:15371540-15371559 MS.gene054892:CDS 50.0%
!!! GCTGGTCTTTCCCTTGGTTT+TGG + chr7.3:15369115-15369134 MS.gene054892:CDS 50.0%
AACATGGACCAGGGGAAGGT+TGG + chr7.3:15369146-15369165 MS.gene054892:CDS 55.0%
ACAGCCAATGGCAAACCCTC+AGG - chr7.3:15369832-15369851 None:intergenic 55.0%
CAATGGCAAACCCTCAGGGA+TGG - chr7.3:15369827-15369846 None:intergenic 55.0%
CAGCCAATGGCAAACCCTCA+GGG - chr7.3:15369831-15369850 None:intergenic 55.0%
CATCCCTGAGGGTTTGCCAT+TGG + chr7.3:15369825-15369844 MS.gene054892:CDS 55.0%
CCTTCATACCAACCTTCCCC+TGG - chr7.3:15369157-15369176 None:intergenic 55.0%
CTTTGGCGACTTCGGTTCCT+TGG - chr7.3:15370962-15370981 None:intergenic 55.0%
GGTCATGTAGTTGCGGTCAC+AGG + chr7.3:15370876-15370895 MS.gene054892:CDS 55.0%
TCCGGCGCAAAAGTTGTCGA+TGG + chr7.3:15369490-15369509 MS.gene054892:CDS 55.0%
TGCGGCTGCAGTCACTATTG+TGG + chr7.3:15369795-15369814 MS.gene054892:CDS 55.0%
! GCTTGGTATCGTTGGCCTCA+AGG + chr7.3:15370566-15370585 MS.gene054892:CDS 55.0%
! TCGAGACGGCTCGAGTTGTT+CGG + chr7.3:15368998-15369017 MS.gene054892:CDS 55.0%
!! CCAGGGGAAGGTTGGTATGA+AGG + chr7.3:15369154-15369173 MS.gene054892:CDS 55.0%
!! GGGGAAGGTTGGTATGAAGG+TGG + chr7.3:15369157-15369176 MS.gene054892:CDS 55.0%
GTAGTTGCGGTCACAGGCGA+CGG + chr7.3:15370882-15370901 MS.gene054892:CDS 60.0%
GTGGTCGTTGCCATCCCTGA+GGG + chr7.3:15369814-15369833 MS.gene054892:CDS 60.0%
TGTGGTCGTTGCCATCCCTG+AGG + chr7.3:15369813-15369832 MS.gene054892:CDS 60.0%
! AGAGGCGCGGTTCGACCTAT+TGG - chr7.3:15371260-15371279 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 15368893 15371739 15368893 ID=MS.gene054892
chr7.3 mRNA 15368893 15371739 15368893 ID=MS.gene054892.t1;Parent=MS.gene054892
chr7.3 exon 15368893 15371739 15368893 ID=MS.gene054892.t1.exon1;Parent=MS.gene054892.t1
chr7.3 CDS 15368893 15371739 15368893 ID=cds.MS.gene054892.t1;Parent=MS.gene054892.t1
Gene Sequence

>MS.gene054892

GACAAAAACTTGAAGTCCTTAACTGAGTTTGGAGGAGTTGAAGGTGTTGGACATGTTCTTGGAACATTTCCAACAAAGGGAATCATTGGAAGTGCAGATGATATTTCGAGACGGCTCGAGTTGTTCGGTTCAAATACTTACAAAAAGCCACCACCAAAAGGTCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACAATTATCATTCTTCTTGTTTGTGCTGGTCTTTCCCTTGGTTTTGGTATAAAAGAACATGGACCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTAGCAGTTTTTCTTGTTGTGGTTGTAAGTGCACTAAGCAATTTTAGACAAGAAAGACAGTTTCACAAATTGTCTAAGATAAGCAACAATATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCTCAACAGATATCAATTTTTGATGTTCTTGTGGGAGATGTTGTGTCTCTCAAGATTGGTGATCAAATTCCAGCTGATGGAGTATTTTTATCCGGTTATTCGTTGCAAGTGGACGAATCTAGCATGACAGGTGAGAGCGACCATGTAGAGATTGAGCCTTTAAGAGCTCCTTTTTTGTTGTCCGGCGCAAAAGTTGTCGATGGATATGCTCAGATGCTTGTAACATCTGTGGGAAAAAACACATCATGGGGACAAATGATGAGCTCGATATCGCGAGACACTAATGAAAGAACGCCGTTACAAGCACGCCTCGACAAGTTAACCTCTTCGATTGGAAAGGTTGGACTTGCAGTAGCGTTTCTTGTTCTTCTAGTGTTGTTAATTCGGTATTTCACCGGTAACTCACATGATGAGAAAGGGAATAAGGAATTTCGAGGAAGCAAAACCGATATAAACGATGTTATGAATTCTGTTGTGAGTATCGTTGCGGCTGCAGTCACTATTGTGGTCGTTGCCATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGATCATGCTATGGTGAGGAAACTTTCAGCTTGTGAAACTATGGGATCAGCAACAGTTATCTGCACTGATAAAACAGGTACCTTGACATTGAATCAAATGAGAGTGACCAAGTTTTGTCTTGGTCTTGAAAATATTATTGAAAACTTTTCCAATGCAATGGCACCAAAAGTTCTTGAGTTGTTCCAACAAGGGATAGGACTCAATACAACTGGTAGTGTCTATAAGCCTCCATCAGGATCTGAACCTGAAATTTTAGGGAGCCCAACGGAGAAAGCTATACTCATGTGGGCAGTATTAGATTTAGGTATGGACATGGATGAAATGAAACAGAAGCATAAAGTCCTTCATGTTGAAACATTTAACTCAGAAAAGAAACGAAGTGGTGTTGCTATAAGGAAAGAGAACGACGACAACAGCGTTCACGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTACAAACTATATTGATAGTAATGGCGTGAGGAAGTCCCTTGACGAAGAAGAACGGAGTAAAATTGAGAGAACCATTCAAGGTATGGCTGCTAGTAGTTTAAGATGTATTGCTTTTGCTCACACGGAAATTTCAGATTCCGAAGATATTGATTATATGATCAAAAGGGAGAAAAAATCACATCAAATGCTTAGAGAAGATGGATTGACATTGCTTGGTATCGTTGGCCTCAAGGATCCATGCAGACCAAACACTAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACTGCTAAGGCAATAGCAATAGAATGTGGAATATTAGATTCTAATAATGATCATGCAAATGCTGGAGAAGTGGTTGAAGGTGTTGAATTCAGAAACTATACAGAGGAAGAGAGAATGGAAAAAGTCGATAAGATCCGAGTGATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTGCAATGCTTAAGAAAGAAAGGTCATGTAGTTGCGGTCACAGGCGACGGCACAAACGATGCACCTGCCTTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTCGCCAAAGAAAGTTCCGATATCGTCATCTTAGACGACAACTTCAATTCTGTTGCAACTGTTTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAGAAATTTATTCAGTTTCAACTAACAGTGAATGTTGCAGCACTTGTGATAAACTTTATTGCAGCAGTTTCTTCTGGTGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACACTAGGTGCTTTGGCACTAGCAACAGAAAGGCCTACAAAAGAGTTAATGAAGAAAAAGCCAATAGGTCGAACCGCGCCTCTTATTACAAACATTATGTGGAGAAACCTTCTAGCTCAAGCTTCATATCAGATTGCAGTTCTTCTGATTATGCAGTTTTATGGAAAATCAATCTTCAATGTAAGTAAGGAGGTAAAGGATACACTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAATTCAACTCAAGAAGCATGGAGAAACTTTATGTATTTGAAGGGATTCTTAAAAACCACTTGTTTCTTGGAATTATTGGGATTACTATTGTTCTTCAAATCCTGATGGTGGAACTGCTAAGGAAGTTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGTTGTTTCATGGCCACTTGCTTGCTTAGTAAAGCTCATACCTGTTTCAGATAAACCTTCCTTCAGTTATACTAAGTGGGTTAAATTATTAGTCTACAAGATTAAGAATGCTTTTTAA

Protein sequence

>MS.gene054892.t1

DKNLKSLTEFGGVEGVGHVLGTFPTKGIIGSADDISRRLELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVEVVRNGRPQQISIFDVLVGDVVSLKIGDQIPADGVFLSGYSLQVDESSMTGESDHVEIEPLRAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSHDEKGNKEFRGSKTDINDVMNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGLENIIENFSNAMAPKVLELFQQGIGLNTTGSVYKPPSGSEPEILGSPTEKAILMWAVLDLGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKENDDNSVHVHWKGAAEMILAMCTNYIDSNGVRKSLDEEERSKIERTIQGMAASSLRCIAFAHTEISDSEDIDYMIKREKKSHQMLREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIAIECGILDSNNDHANAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTAPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSMEKLYVFEGILKNHLFLGIIGITIVLQILMVELLRKFADTERLTWEQWGICIGIAVVSWPLACLVKLIPVSDKPSFSYTKWVKLLVYKIKNAF