AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45017

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45017.t1 MTR_6g463930 51.399 393 159 7 1 385 1 369 1.19e-118 353
MS.gene45017.t1 MTR_7g105490 49.498 299 80 6 157 416 21 287 1.14e-80 250
MS.gene45017.t1 MTR_1g044605 36.870 377 201 8 36 385 18 384 2.61e-68 223
MS.gene45017.t1 MTR_8g469580 40.458 262 147 4 42 295 41 301 2.70e-55 190
MS.gene45017.t1 MTR_8g056180 36.254 331 172 9 94 395 1 321 3.16e-50 173
MS.gene45017.t1 MTR_1g052090 32.845 341 166 11 42 370 26 315 1.85e-38 142
MS.gene45017.t1 MTR_6g088860 36.967 211 122 4 94 295 1 209 2.91e-35 130
MS.gene45017.t1 MTR_6g466450 36.967 211 122 4 94 295 1 209 2.91e-35 130
MS.gene45017.t1 MTR_3g080720 26.110 383 215 10 44 388 45 397 2.02e-26 110
MS.gene45017.t1 MTR_3g455890 25.773 388 216 11 42 388 43 399 2.78e-26 110
MS.gene45017.t1 MTR_7g070630 25.575 391 218 12 43 388 44 406 1.07e-24 105
MS.gene45017.t1 MTR_5g095330 28.472 288 151 12 12 271 8 268 2.36e-23 99.0
MS.gene45017.t1 MTR_0084s0060 24.425 348 173 7 42 388 43 301 1.64e-20 92.0
MS.gene45017.t1 MTR_5g079810 25.157 318 203 9 94 388 1 306 8.46e-20 90.1
MS.gene45017.t1 MTR_0126s0010 24.199 281 187 7 126 388 10 282 2.71e-18 85.5
MS.gene45017.t1 MTR_5g095430 25.468 267 169 11 11 266 262 509 1.10e-14 76.3
MS.gene45017.t1 MTR_5g095400 25.210 238 160 9 41 266 287 518 4.32e-14 74.3
MS.gene45017.t1 MTR_2g009940 25.836 329 212 12 1 311 87 401 6.40e-12 67.8
MS.gene45017.t1 MTR_7g024810 25.532 329 213 12 1 311 110 424 1.03e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 115 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTGGTGTCTTGTGGTTTA+GGG 0.242015 6.3:+68504818 None:intergenic
TTAGTGGTGTCTTGTGGTTT+AGG 0.262150 6.3:+68504817 None:intergenic
TGATGTTTATGAAAAGTCTT+TGG 0.266418 6.3:-68504011 MS.gene45017:CDS
TTAGGTGGTGGTATGGGTCT+TGG 0.267175 6.3:+68504736 None:intergenic
GAAGACACATTCAAGCAAAA+AGG 0.291330 6.3:-68504586 MS.gene45017:CDS
TCTGATGCGTTCTTCTCTTT+CGG 0.313491 6.3:+68503619 None:intergenic
GATGCCCATGCCTTGTATTC+TGG 0.326053 6.3:+68504253 None:intergenic
TGGTATGATGGTGGTGGGTT+AGG 0.341031 6.3:+68504718 None:intergenic
CAGTGTCCCAATGTCTGTTT+TGG 0.344989 6.3:+68504085 None:intergenic
CGAAGTACGAAAAGAATTAT+AGG 0.345759 6.3:-68503943 MS.gene45017:CDS
GATGTTTATGAAAAGTCTTT+GGG 0.366141 6.3:-68504010 MS.gene45017:CDS
CTCGATCGGGCTAGCAAACC+TGG 0.367830 6.3:+68503679 None:intergenic
ATTATTCTGCTGCTGCAATT+AGG 0.370077 6.3:-68504438 MS.gene45017:CDS
TGGTGGGTTAGGTGGTGGTA+TGG 0.371717 6.3:+68504729 None:intergenic
TCATGACTGATGCTTATTCC+AGG 0.387348 6.3:-68503697 MS.gene45017:CDS
GAGAGGGAAAAGGGTGGATA+GGG 0.394453 6.3:-68504318 MS.gene45017:CDS
GGAATACCACTGATGTGTTT+AGG 0.396565 6.3:-68504366 MS.gene45017:CDS
GGTGGGTTAGGTGGTGGTAT+GGG 0.402108 6.3:+68504730 None:intergenic
AGGTCCTGACGGGTAGTATC+GGG 0.422198 6.3:+68503547 None:intergenic
TGCTGATTACCGTCGGGAAC+CGG 0.423909 6.3:-68503723 MS.gene45017:CDS
TTGAATGTGTCTTCAAAGAT+TGG 0.432397 6.3:+68504595 None:intergenic
CAGGTCCTGACGGGTAGTAT+CGG 0.436966 6.3:+68503546 None:intergenic
CGATACTACCCGTCAGGACC+TGG 0.440930 6.3:-68503545 MS.gene45017:CDS
AGAGAGGGAAAAGGGTGGAT+AGG 0.443642 6.3:-68504319 MS.gene45017:CDS
CATCGACTGCTGAGATGACT+AGG 0.445053 6.3:-68504201 MS.gene45017:CDS
CGGGGTCGGGAGTCAGCATC+AGG 0.445288 6.3:+68503566 None:intergenic
ATACCATAGGTTTGTTTCAC+CGG 0.445645 6.3:-68504701 MS.gene45017:CDS
GGTATGGGTCTTGGATTAAG+TGG 0.448965 6.3:+68504745 None:intergenic
TGTGCTCTTGACGACCCTCC+AGG 0.460267 6.3:+68503527 None:intergenic
TGGGTTAAAAGTAGAGGAAC+CGG 0.464591 6.3:+68504765 None:intergenic
ATATGATGAGAGAGGGAAAA+GGG 0.465213 6.3:-68504327 MS.gene45017:CDS
CGAAACCTCTCCTCCGCCTC+CGG 0.465816 6.3:+68504682 None:intergenic
ATTTCGACGAGGAGAGGAAG+AGG 0.474370 6.3:-68503646 MS.gene45017:CDS
TGTTTAGGTCCCGTGCTGAA+TGG 0.485624 6.3:-68504351 MS.gene45017:CDS
GTTTGTTTCACCGGAGGCGG+AGG 0.492567 6.3:-68504692 MS.gene45017:CDS
TAGGTTTGTTTCACCGGAGG+CGG 0.492722 6.3:-68504695 MS.gene45017:CDS
AAAACGCTGGTAGTGGCATT+CGG 0.493467 6.3:+68503768 None:intergenic
CTGCTGAGATGACTAGGGAT+AGG 0.495624 6.3:-68504195 MS.gene45017:CDS
AGGAAAGGGAAGGAATGTTC+CGG 0.495807 6.3:-68504784 MS.gene45017:CDS
ACAAGGTCAGCCTCAGATGA+TGG 0.498552 6.3:-68503906 MS.gene45017:CDS
GGAGACTCGAAGATATATCC+TGG 0.498791 6.3:+68503789 None:intergenic
ATTCATGTGGAACAAGGAAA+GGG 0.499156 6.3:-68504647 MS.gene45017:CDS
GTTTAGGTCCCGTGCTGAAT+GGG 0.505357 6.3:-68504350 MS.gene45017:CDS
TGACGGGTAGTATCGGGGTC+GGG 0.508664 6.3:+68503553 None:intergenic
GATGGTGGTGGGTTAGGTGG+TGG 0.510624 6.3:+68504724 None:intergenic
GACGACCCTCCAGGTCCTGA+CGG 0.511888 6.3:+68503536 None:intergenic
CAAGTTGTGTGAGGCTGCAA+AGG 0.514552 6.3:-68504050 MS.gene45017:CDS
GTATGGGTCTTGGATTAAGT+GGG 0.514636 6.3:+68504746 None:intergenic
TATGATGGTGGTGGGTTAGG+TGG 0.517739 6.3:+68504721 None:intergenic
TAGCTCTCCAAAACAGACAT+TGG 0.520306 6.3:-68504092 MS.gene45017:CDS
TAAACATCAAATGGTTCAGT+AGG 0.530319 6.3:+68504025 None:intergenic
AGCTCTCCAAAACAGACATT+GGG 0.531373 6.3:-68504091 MS.gene45017:CDS
TCCTCCGAAAACGCTGGTAG+TGG 0.532880 6.3:+68503761 None:intergenic
TGAATGTGTCTTCAAAGATT+GGG 0.536878 6.3:+68504596 None:intergenic
CGACCCCGATACTACCCGTC+AGG 0.538391 6.3:-68503551 MS.gene45017:CDS
TCGGCCGTGTTAATTCTTTG+CGG 0.545386 6.3:+68504283 None:intergenic
TAAGCATCAGTCATGACATC+CGG 0.548677 6.3:+68503704 None:intergenic
TGCTGAGATGACTAGGGATA+GGG 0.550140 6.3:-68504194 MS.gene45017:CDS
GATATGATGAGAGAGGGAAA+AGG 0.551850 6.3:-68504328 MS.gene45017:CDS
AATTCATGTGGAACAAGGAA+AGG 0.554900 6.3:-68504648 MS.gene45017:CDS
ATTAAGTGGGTTAAAAGTAG+AGG 0.557524 6.3:+68504759 None:intergenic
AGTGGTGTCTTGTGGTTTAG+GGG 0.560630 6.3:+68504819 None:intergenic
GGTGGATAGGGACTGTTGCT+AGG 0.562002 6.3:-68504306 MS.gene45017:CDS
CCTCCGGTGAAACAAACCTA+TGG 0.564923 6.3:+68504698 None:intergenic
ACGACCCTCCAGGTCCTGAC+GGG 0.566284 6.3:+68503537 None:intergenic
AAACATGTGATGTAGAAGCT+AGG 0.566845 6.3:-68504390 MS.gene45017:CDS
CTTGTATTCTGGTAAAAGCT+CGG 0.568961 6.3:+68504264 None:intergenic
TGATGAGAGAGGGAAAAGGG+TGG 0.570972 6.3:-68504324 MS.gene45017:CDS
TCAGCCTCAGATGATGGAGC+AGG 0.573485 6.3:-68503900 MS.gene45017:CDS
CTGACGGGTAGTATCGGGGT+CGG 0.573860 6.3:+68503552 None:intergenic
TTTCGACGAGGAGAGGAAGA+GGG 0.574267 6.3:-68503645 MS.gene45017:CDS
TTTACCAGAATACAAGGCAT+GGG 0.581130 6.3:-68504257 MS.gene45017:CDS
GTTTGCTAGCCCGATCGAGA+TGG 0.581227 6.3:-68503675 MS.gene45017:CDS
GCATCAGAGAGGAGTACTAC+AGG 0.585339 6.3:-68503604 MS.gene45017:CDS
TTCGACGAGGAGAGGAAGAG+GGG 0.586839 6.3:-68503644 MS.gene45017:CDS
GGAGCAGGATGGTGTCCCAC+AGG 0.587382 6.3:-68503885 MS.gene45017:intron
TTTGGGTTAGTGGTGTCTTG+TGG 0.587989 6.3:+68504811 None:intergenic
ATTAGCTGCTGATTACCGTC+GGG 0.589289 6.3:-68503729 MS.gene45017:CDS
TATTAGCTGCTGATTACCGT+CGG 0.593807 6.3:-68503730 MS.gene45017:CDS
CATCATATCCCATTCAGCAC+GGG 0.595421 6.3:+68504342 None:intergenic
TGTGATTTCTGATGAAGAGA+TGG 0.596399 6.3:-68504155 MS.gene45017:CDS
AACCTATGGTATGATGGTGG+TGG 0.596943 6.3:+68504712 None:intergenic
TGAGAAATTCATGTGGAACA+AGG 0.598821 6.3:-68504653 MS.gene45017:CDS
GAAACAAACCTATGGTATGA+TGG 0.599108 6.3:+68504706 None:intergenic
ATCGACTGCTGAGATGACTA+GGG 0.600234 6.3:-68504200 MS.gene45017:CDS
ATGTTTATGAAAAGTCTTTG+GGG 0.602148 6.3:-68504009 MS.gene45017:CDS
TTTCACCGGAGGCGGAGGAG+AGG 0.602244 6.3:-68504687 MS.gene45017:CDS
AAAAGTATTTCGACGAGGAG+AGG 0.602475 6.3:-68503652 MS.gene45017:CDS
CCATCCTGCTCCATCATCTG+AGG 0.608334 6.3:+68503896 None:intergenic
ATGAACTCCTCCGAAAACGC+TGG 0.616116 6.3:+68503755 None:intergenic
TCATCATATCCCATTCAGCA+CGG 0.616589 6.3:+68504341 None:intergenic
GAGACTCGAAGATATATCCT+GGG 0.620444 6.3:+68503790 None:intergenic
TTCATGTGGAACAAGGAAAG+GGG 0.621246 6.3:-68504646 MS.gene45017:CDS
TCATGACATCCGGTTCCCGA+CGG 0.621317 6.3:+68503714 None:intergenic
CCATAGGTTTGTTTCACCGG+AGG 0.622113 6.3:-68504698 MS.gene45017:CDS
TTCTGATGAAGAGATGGATG+TGG 0.623606 6.3:-68504149 MS.gene45017:CDS
CCTCAGATGATGGAGCAGGA+TGG 0.637240 6.3:-68503896 MS.gene45017:CDS
TACTACCCGTCAGGACCTGG+AGG 0.638004 6.3:-68503542 MS.gene45017:CDS
TTTGATCAACAAGTTGTGTG+AGG 0.645455 6.3:-68504059 MS.gene45017:CDS
ACCCACCACCATCATACCAT+AGG 0.646305 6.3:-68504714 MS.gene45017:CDS
CATGTGATGTAGAAGCTAGG+AGG 0.651514 6.3:-68504387 MS.gene45017:CDS
GATGAACATGCATATGTGAG+AGG 0.655304 6.3:-68504472 MS.gene45017:CDS
ACCTATGGTATGATGGTGGT+GGG 0.659543 6.3:+68504713 None:intergenic
GTGTGATTGAGAAATTCATG+TGG 0.660430 6.3:-68504660 MS.gene45017:CDS
GAATGGGATATGATGAGAGA+GGG 0.665200 6.3:-68504334 MS.gene45017:CDS
AGGCGGATGCAAGAGCAACA+AGG 0.666960 6.3:-68503923 MS.gene45017:CDS
GGTCCTGACGGGTAGTATCG+GGG 0.676732 6.3:+68503548 None:intergenic
AAGAGAAGAACGCATCAGAG+AGG 0.683817 6.3:-68503615 MS.gene45017:CDS
ACGGGACCTAAACACATCAG+TGG 0.697560 6.3:+68504360 None:intergenic
ACTACCCGTCAGGACCTGGA+GGG 0.710336 6.3:-68503541 MS.gene45017:CDS
TGAATGGGATATGATGAGAG+AGG 0.719098 6.3:-68504335 MS.gene45017:CDS
AGTACGAAAAGAATTATAGG+CGG 0.722956 6.3:-68503940 MS.gene45017:CDS
TAGGCCGCAAAGAATTAACA+CGG 0.738997 6.3:-68504287 MS.gene45017:CDS
ACAAACCTATGGTATGATGG+TGG 0.752743 6.3:+68504709 None:intergenic
GATGGAAAAGTATTTCGACG+AGG 0.777538 6.3:-68503657 MS.gene45017:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGTTTCAATTTTTACAAATT+GGG - chr6.3:68503721-68503740 MS.gene45017:CDS 20.0%
!!! GTTTCAATTTTTACAAATTG+GGG - chr6.3:68503722-68503741 MS.gene45017:CDS 20.0%
! ATGTTTATGAAAAGTCTTTG+GGG - chr6.3:68504337-68504356 MS.gene45017:CDS 25.0%
! GATGTTTATGAAAAGTCTTT+GGG - chr6.3:68504336-68504355 MS.gene45017:CDS 25.0%
! TGATGTTTATGAAAAGTCTT+TGG - chr6.3:68504335-68504354 MS.gene45017:CDS 25.0%
!! GACTTTTCATAAACATCAAA+TGG + chr6.3:68504333-68504352 None:intergenic 25.0%
!! GGGTTTCAATTTTTACAAAT+TGG - chr6.3:68503720-68503739 MS.gene45017:CDS 25.0%
AGTACGAAAAGAATTATAGG+CGG - chr6.3:68504406-68504425 MS.gene45017:CDS 30.0%
CGAAGTACGAAAAGAATTAT+AGG - chr6.3:68504403-68504422 MS.gene45017:CDS 30.0%
TAAACATCAAATGGTTCAGT+AGG + chr6.3:68504324-68504343 None:intergenic 30.0%
TAAGTGAATTCAGCAAAATG+TGG + chr6.3:68504519-68504538 None:intergenic 30.0%
TGAATGTGTCTTCAAAGATT+GGG + chr6.3:68503753-68503772 None:intergenic 30.0%
TTGAATGTGTCTTCAAAGAT+TGG + chr6.3:68503754-68503773 None:intergenic 30.0%
! AAATACTTTTCCATCTCGAT+CGG + chr6.3:68504684-68504703 None:intergenic 30.0%
! AACTATAGCTCGTGAATTTT+TGG - chr6.3:68503825-68503844 MS.gene45017:intron 30.0%
!! ATTAAGTGGGTTAAAAGTAG+AGG + chr6.3:68503590-68503609 None:intergenic 30.0%
AAACATGTGATGTAGAAGCT+AGG - chr6.3:68503956-68503975 MS.gene45017:CDS 35.0%
AATTCATGTGGAACAAGGAA+AGG - chr6.3:68503698-68503717 MS.gene45017:CDS 35.0%
ACACATTCAAGCAAAAAGGT+TGG - chr6.3:68503764-68503783 MS.gene45017:CDS 35.0%
ACTAACCCAAAAAGAAGGAA+AGG - chr6.3:68503547-68503566 MS.gene45017:CDS 35.0%
ATATGATGAGAGAGGGAAAA+GGG - chr6.3:68504019-68504038 MS.gene45017:CDS 35.0%
ATTATTCTGCTGCTGCAATT+AGG - chr6.3:68503908-68503927 MS.gene45017:CDS 35.0%
ATTCATGTGGAACAAGGAAA+GGG - chr6.3:68503699-68503718 MS.gene45017:CDS 35.0%
CACATTCAAGCAAAAAGGTT+GGG - chr6.3:68503765-68503784 MS.gene45017:CDS 35.0%
CTAACCCAAAAAGAAGGAAA+GGG - chr6.3:68503548-68503567 MS.gene45017:CDS 35.0%
CTTGTATTCTGGTAAAAGCT+CGG + chr6.3:68504085-68504104 None:intergenic 35.0%
GAAACAAACCTATGGTATGA+TGG + chr6.3:68503643-68503662 None:intergenic 35.0%
GAAGACACATTCAAGCAAAA+AGG - chr6.3:68503760-68503779 MS.gene45017:CDS 35.0%
GTGTGATTGAGAAATTCATG+TGG - chr6.3:68503686-68503705 MS.gene45017:CDS 35.0%
TGAGAAATTCATGTGGAACA+AGG - chr6.3:68503693-68503712 MS.gene45017:CDS 35.0%
TGCAAAAATGGTAACAGAGT+GGG - chr6.3:68503795-68503814 MS.gene45017:intron 35.0%
TGCTGAATTCACTTATGCTA+TGG - chr6.3:68504524-68504543 MS.gene45017:CDS 35.0%
TGTGATTTCTGATGAAGAGA+TGG - chr6.3:68504191-68504210 MS.gene45017:CDS 35.0%
TTGCAAAAATGGTAACAGAG+TGG - chr6.3:68503794-68503813 MS.gene45017:CDS 35.0%
TTGGGAAGGAATTGCAAAAA+TGG - chr6.3:68503783-68503802 MS.gene45017:CDS 35.0%
TTTACCAGAATACAAGGCAT+GGG - chr6.3:68504089-68504108 MS.gene45017:CDS 35.0%
TTTGATCAACAAGTTGTGTG+AGG - chr6.3:68504287-68504306 MS.gene45017:CDS 35.0%
! AATACTTTTCCATCTCGATC+GGG + chr6.3:68504683-68504702 None:intergenic 35.0%
! ATACCATAGGTTTGTTTCAC+CGG - chr6.3:68503645-68503664 MS.gene45017:CDS 35.0%
! TTTTACCAGAATACAAGGCA+TGG - chr6.3:68504088-68504107 MS.gene45017:CDS 35.0%
!!! TGTGATGAGAAGTTTTGAGA+GGG - chr6.3:68504374-68504393 MS.gene45017:CDS 35.0%
!!! TTTCCTTCTTTTTGGGTTAG+TGG + chr6.3:68503548-68503567 None:intergenic 35.0%
ACAAACCTATGGTATGATGG+TGG + chr6.3:68503640-68503659 None:intergenic 40.0%
ACACCACTAACCCAAAAAGA+AGG - chr6.3:68503542-68503561 MS.gene45017:CDS 40.0%
AGCTCTCCAAAACAGACATT+GGG - chr6.3:68504255-68504274 MS.gene45017:CDS 40.0%
GAATGGGATATGATGAGAGA+GGG - chr6.3:68504012-68504031 MS.gene45017:CDS 40.0%
GAGACTCGAAGATATATCCT+GGG + chr6.3:68504559-68504578 None:intergenic 40.0%
GATATGATGAGAGAGGGAAA+AGG - chr6.3:68504018-68504037 MS.gene45017:CDS 40.0%
GATGAACATGCATATGTGAG+AGG - chr6.3:68503874-68503893 MS.gene45017:intron 40.0%
GCAAAAATGGTAACAGAGTG+GGG - chr6.3:68503796-68503815 MS.gene45017:intron 40.0%
GGAATACCACTGATGTGTTT+AGG - chr6.3:68503980-68503999 MS.gene45017:CDS 40.0%
GTATGGGTCTTGGATTAAGT+GGG + chr6.3:68503603-68503622 None:intergenic 40.0%
GTGAATTCAGCAAAATGTGG+TGG + chr6.3:68504516-68504535 None:intergenic 40.0%
TAAGCATCAGTCATGACATC+CGG + chr6.3:68504645-68504664 None:intergenic 40.0%
TAGCTCTCCAAAACAGACAT+TGG - chr6.3:68504254-68504273 MS.gene45017:CDS 40.0%
TAGGCCGCAAAGAATTAACA+CGG - chr6.3:68504059-68504078 MS.gene45017:CDS 40.0%
TAGTGGTGTCTTGTGGTTTA+GGG + chr6.3:68503531-68503550 None:intergenic 40.0%
TCATCATATCCCATTCAGCA+CGG + chr6.3:68504008-68504027 None:intergenic 40.0%
TCATGACTGATGCTTATTCC+AGG - chr6.3:68504649-68504668 MS.gene45017:CDS 40.0%
TCTGATGCGTTCTTCTCTTT+CGG + chr6.3:68504730-68504749 None:intergenic 40.0%
TGAATGGGATATGATGAGAG+AGG - chr6.3:68504011-68504030 MS.gene45017:CDS 40.0%
TGGGTTAAAAGTAGAGGAAC+CGG + chr6.3:68503584-68503603 None:intergenic 40.0%
TTAGTGGTGTCTTGTGGTTT+AGG + chr6.3:68503532-68503551 None:intergenic 40.0%
TTCAAGCAAAAAGGTTGGGA+AGG - chr6.3:68503769-68503788 MS.gene45017:CDS 40.0%
TTCATGTGGAACAAGGAAAG+GGG - chr6.3:68503700-68503719 MS.gene45017:CDS 40.0%
TTCTGATGAAGAGATGGATG+TGG - chr6.3:68504197-68504216 MS.gene45017:CDS 40.0%
! CCTTCCCTTTCCTTCTTTTT+GGG + chr6.3:68503555-68503574 None:intergenic 40.0%
! CGAGCTTTTACCAGAATACA+AGG - chr6.3:68504083-68504102 MS.gene45017:CDS 40.0%
! TATTAGCTGCTGATTACCGT+CGG - chr6.3:68504616-68504635 MS.gene45017:CDS 40.0%
! TCCTTCCCTTTCCTTCTTTT+TGG + chr6.3:68503556-68503575 None:intergenic 40.0%
!! AAAAGTATTTCGACGAGGAG+AGG - chr6.3:68504694-68504713 MS.gene45017:CDS 40.0%
!! GATGGAAAAGTATTTCGACG+AGG - chr6.3:68504689-68504708 MS.gene45017:CDS 40.0%
!!! CTGTGATGAGAAGTTTTGAG+AGG - chr6.3:68504373-68504392 MS.gene45017:CDS 40.0%
AAGAGAAGAACGCATCAGAG+AGG - chr6.3:68504731-68504750 MS.gene45017:CDS 45.0%
AGATATATCCTGGGCCTAGT+TGG + chr6.3:68504550-68504569 None:intergenic 45.0%
AGGAAAGGGAAGGAATGTTC+CGG - chr6.3:68503562-68503581 MS.gene45017:CDS 45.0%
AGTGGTGTCTTGTGGTTTAG+GGG + chr6.3:68503530-68503549 None:intergenic 45.0%
ATCGACTGCTGAGATGACTA+GGG - chr6.3:68504146-68504165 MS.gene45017:CDS 45.0%
CACTTATGCTATGGCCAACT+AGG - chr6.3:68504533-68504552 MS.gene45017:CDS 45.0%
CATCATATCCCATTCAGCAC+GGG + chr6.3:68504007-68504026 None:intergenic 45.0%
CATGTGATGTAGAAGCTAGG+AGG - chr6.3:68503959-68503978 MS.gene45017:CDS 45.0%
CCCAAAAAGAAGGAAAGGGA+AGG - chr6.3:68503552-68503571 MS.gene45017:CDS 45.0%
GGAGACTCGAAGATATATCC+TGG + chr6.3:68504560-68504579 None:intergenic 45.0%
GGTATGGGTCTTGGATTAAG+TGG + chr6.3:68503604-68503623 None:intergenic 45.0%
TCGGCCGTGTTAATTCTTTG+CGG + chr6.3:68504066-68504085 None:intergenic 45.0%
TGCTGAGATGACTAGGGATA+GGG - chr6.3:68504152-68504171 MS.gene45017:CDS 45.0%
! AATGCCACTACCAGCGTTTT+CGG - chr6.3:68504581-68504600 MS.gene45017:CDS 45.0%
! ATTAGCTGCTGATTACCGTC+GGG - chr6.3:68504617-68504636 MS.gene45017:CDS 45.0%
! CAGTGTCCCAATGTCTGTTT+TGG + chr6.3:68504264-68504283 None:intergenic 45.0%
!! AAAACGCTGGTAGTGGCATT+CGG + chr6.3:68504581-68504600 None:intergenic 45.0%
!! AACCTATGGTATGATGGTGG+TGG + chr6.3:68503637-68503656 None:intergenic 45.0%
!! ACCTATGGTATGATGGTGGT+GGG + chr6.3:68503636-68503655 None:intergenic 45.0%
!! TTTGGGTTAGTGGTGTCTTG+TGG + chr6.3:68503538-68503557 None:intergenic 45.0%
ACAAGGTCAGCCTCAGATGA+TGG - chr6.3:68504440-68504459 MS.gene45017:CDS 50.0%
ACCCACCACCATCATACCAT+AGG - chr6.3:68503632-68503651 MS.gene45017:CDS 50.0%
ACGGGACCTAAACACATCAG+TGG + chr6.3:68503989-68504008 None:intergenic 50.0%
AGAGAGGGAAAAGGGTGGAT+AGG - chr6.3:68504027-68504046 MS.gene45017:CDS 50.0%
ATGAACTCCTCCGAAAACGC+TGG + chr6.3:68504594-68504613 None:intergenic 50.0%
ATTTCGACGAGGAGAGGAAG+AGG - chr6.3:68504700-68504719 MS.gene45017:CDS 50.0%
CAAGTTGTGTGAGGCTGCAA+AGG - chr6.3:68504296-68504315 MS.gene45017:CDS 50.0%
CCTCCGGTGAAACAAACCTA+TGG + chr6.3:68503651-68503670 None:intergenic 50.0%
CTGCTGAGATGACTAGGGAT+AGG - chr6.3:68504151-68504170 MS.gene45017:CDS 50.0%
GAGAGGGAAAAGGGTGGATA+GGG - chr6.3:68504028-68504047 MS.gene45017:CDS 50.0%
GATGCCCATGCCTTGTATTC+TGG + chr6.3:68504096-68504115 None:intergenic 50.0%
GTTTAGGTCCCGTGCTGAAT+GGG - chr6.3:68503996-68504015 MS.gene45017:CDS 50.0%
TGATGAGAGAGGGAAAAGGG+TGG - chr6.3:68504022-68504041 MS.gene45017:CDS 50.0%
TGTTTAGGTCCCGTGCTGAA+TGG - chr6.3:68503995-68504014 MS.gene45017:CDS 50.0%
TTTCGACGAGGAGAGGAAGA+GGG - chr6.3:68504701-68504720 MS.gene45017:CDS 50.0%
! CATCGACTGCTGAGATGACT+AGG - chr6.3:68504145-68504164 MS.gene45017:CDS 50.0%
! CCATAGGTTTGTTTCACCGG+AGG - chr6.3:68503648-68503667 MS.gene45017:CDS 50.0%
! TAGGTTTGTTTCACCGGAGG+CGG - chr6.3:68503651-68503670 MS.gene45017:CDS 50.0%
! TTAGGTGGTGGTATGGGTCT+TGG + chr6.3:68503613-68503632 None:intergenic 50.0%
!! GCATCAGAGAGGAGTACTAC+AGG - chr6.3:68504742-68504761 MS.gene45017:CDS 50.0%
!! TATGATGGTGGTGGGTTAGG+TGG + chr6.3:68503628-68503647 None:intergenic 50.0%
!! TGGTATGATGGTGGTGGGTT+AGG + chr6.3:68503631-68503650 None:intergenic 50.0%
AGACCTTGCTGAACCTGAGG+TGG + chr6.3:68504492-68504511 None:intergenic 55.0%
AGGCGGATGCAAGAGCAACA+AGG - chr6.3:68504423-68504442 MS.gene45017:CDS 55.0%
CCATCCTGCTCCATCATCTG+AGG + chr6.3:68504453-68504472 None:intergenic 55.0%
GGAAGACCTTGCTGAACCTG+AGG + chr6.3:68504495-68504514 None:intergenic 55.0%
GGTGGATAGGGACTGTTGCT+AGG - chr6.3:68504040-68504059 MS.gene45017:CDS 55.0%
TCATGACATCCGGTTCCCGA+CGG + chr6.3:68504635-68504654 None:intergenic 55.0%
TCCTCCGAAAACGCTGGTAG+TGG + chr6.3:68504588-68504607 None:intergenic 55.0%
TTCGACGAGGAGAGGAAGAG+GGG - chr6.3:68504702-68504721 MS.gene45017:CDS 55.0%
! AGGTCCTGACGGGTAGTATC+GGG + chr6.3:68504802-68504821 None:intergenic 55.0%
! CAGGTCCTGACGGGTAGTAT+CGG + chr6.3:68504803-68504822 None:intergenic 55.0%
! GTTTGCTAGCCCGATCGAGA+TGG - chr6.3:68504671-68504690 MS.gene45017:CDS 55.0%
! TGCTGATTACCGTCGGGAAC+CGG - chr6.3:68504623-68504642 MS.gene45017:CDS 55.0%
!! CCTCAGATGATGGAGCAGGA+TGG - chr6.3:68504450-68504469 MS.gene45017:CDS 55.0%
!! GGTGGGTTAGGTGGTGGTAT+GGG + chr6.3:68503619-68503638 None:intergenic 55.0%
!! TCAGCCTCAGATGATGGAGC+AGG - chr6.3:68504446-68504465 MS.gene45017:CDS 55.0%
!! TGGTGGGTTAGGTGGTGGTA+TGG + chr6.3:68503620-68503639 None:intergenic 55.0%
ACTACCCGTCAGGACCTGGA+GGG - chr6.3:68504805-68504824 MS.gene45017:CDS 60.0%
CAGCCACCTCAGGTTCAGCA+AGG - chr6.3:68504486-68504505 MS.gene45017:CDS 60.0%
CGATACTACCCGTCAGGACC+TGG - chr6.3:68504801-68504820 MS.gene45017:CDS 60.0%
GTTTGTTTCACCGGAGGCGG+AGG - chr6.3:68503654-68503673 MS.gene45017:CDS 60.0%
TACTACCCGTCAGGACCTGG+AGG - chr6.3:68504804-68504823 MS.gene45017:CDS 60.0%
TGCTATGGCCAACTAGGCCC+AGG - chr6.3:68504539-68504558 MS.gene45017:CDS 60.0%
TGTGCTCTTGACGACCCTCC+AGG + chr6.3:68504822-68504841 None:intergenic 60.0%
! CTGACGGGTAGTATCGGGGT+CGG + chr6.3:68504797-68504816 None:intergenic 60.0%
! GCCACTACCAGCGTTTTCGG+AGG - chr6.3:68504584-68504603 MS.gene45017:CDS 60.0%
! GGTCCTGACGGGTAGTATCG+GGG + chr6.3:68504801-68504820 None:intergenic 60.0%
! TGACGGGTAGTATCGGGGTC+GGG + chr6.3:68504796-68504815 None:intergenic 60.0%
!! CTCGATCGGGCTAGCAAACC+TGG + chr6.3:68504670-68504689 None:intergenic 60.0%
!! GATGGTGGTGGGTTAGGTGG+TGG + chr6.3:68503625-68503644 None:intergenic 60.0%
ACCTGAGGTGGCTGCACCTG+TGG + chr6.3:68504480-68504499 None:intergenic 65.0%
ACGACCCTCCAGGTCCTGAC+GGG + chr6.3:68504812-68504831 None:intergenic 65.0%
CCTGAGGTGGCTGCACCTGT+GGG + chr6.3:68504479-68504498 None:intergenic 65.0%
CGAAACCTCTCCTCCGCCTC+CGG + chr6.3:68503667-68503686 None:intergenic 65.0%
CGACCCCGATACTACCCGTC+AGG - chr6.3:68504795-68504814 MS.gene45017:CDS 65.0%
GACGACCCTCCAGGTCCTGA+CGG + chr6.3:68504813-68504832 None:intergenic 65.0%
GGAGCAGGATGGTGTCCCAC+AGG - chr6.3:68504461-68504480 MS.gene45017:CDS 65.0%
TTTCACCGGAGGCGGAGGAG+AGG - chr6.3:68503659-68503678 MS.gene45017:CDS 65.0%
CCCACAGGTGCAGCCACCTC+AGG - chr6.3:68504476-68504495 MS.gene45017:CDS 70.0%
CGGGGTCGGGAGTCAGCATC+AGG + chr6.3:68504783-68504802 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 68503523 68504845 68503523 ID=MS.gene45017
chr6.3 mRNA 68503523 68504845 68503523 ID=MS.gene45017.t1;Parent=MS.gene45017
chr6.3 exon 68503886 68504845 68503886 ID=MS.gene45017.t1.exon1;Parent=MS.gene45017.t1
chr6.3 CDS 68503886 68504845 68503886 ID=cds.MS.gene45017.t1;Parent=MS.gene45017.t1
chr6.3 exon 68503523 68503813 68503523 ID=MS.gene45017.t1.exon2;Parent=MS.gene45017.t1
chr6.3 CDS 68503523 68503813 68503523 ID=cds.MS.gene45017.t1;Parent=MS.gene45017.t1
Gene Sequence

>MS.gene45017

ATGGCCCCTAAACCACAAGACACCACTAACCCAAAAAGAAGGAAAGGGAAGGAATGTTCCGGTTCCTCTACTTTTAACCCACTTAATCCAAGACCCATACCACCACCTAACCCACCACCATCATACCATAGGTTTGTTTCACCGGAGGCGGAGGAGAGGTTTCGTGTGATTGAGAAATTCATGTGGAACAAGGAAAGGGGTTTCAATTTTTACAAATTGGGGAAGTACCCAATCTTTGAAGACACATTCAAGCAAAAAGGTTGGGAAGGAATTGCAAAAATGGTAACAGAGTGGGGCAATGCAACTATAGCTCGTGAATTTTTGGTGAATGCTCTTGCTGAAAAAAAGTCAGATGAACATGCATATGTGAGAGGTAAGAAAGTTAATTATTCTGCTGCTGCAATTAGGCGTGTGCTTAAGTTGAGAGCTGTAAAAACATGTGATGTAGAAGCTAGGAGGAATACCACTGATGTGTTTAGGTCCCGTGCTGAATGGGATATGATGAGAGAGGGAAAAGGGTGGATAGGGACTGTTGCTAGGCCGCAAAGAATTAACACGGCCGAGCTTTTACCAGAATACAAGGCATGGGCATCTTTTATTTTGACTGTTATTGATCAGACTTCATCGACTGCTGAGATGACTAGGGATAGGGTGCTTATTTTGTTATCTGTGATTTCTGATGAAGAGATGGATGTGGCTGAATTGATGTATAAAAGTTTAAAGAAGTTGATTAGCTCTCCAAAACAGACATTGGGACACTGTTGTTTGATCAACAAGTTGTGTGAGGCTGCAAAGGTTCCTACTGAACCATTTGATGTTTATGAAAAGTCTTTGGGGTTTGTGTCTGAGTCTGTGATGAGAAGTTTTGAGAGGGATCAAGCGAAGTACGAAAAGAATTATAGGCGGATGCAAGAGCAACAAGGTCAGCCTCAGATGATGGAGCAGGATGGTGTCCCACAGGTGCAGCCACCTCAGGTTCAGCAAGGTCTTCCACCACATTTTGCTGAATTCACTTATGCTATGGCCAACTAGGCCCAGGATATATCTTCGAGTCTCCGAATGCCACTACCAGCGTTTTCGGAGGAGTTCATTTTATTAGCTGCTGATTACCGTCGGGAACCGGATGTCATGACTGATGCTTATTCCAGGTTTGCTAGCCCGATCGAGATGGAAAAGTATTTCGACGAGGAGAGGAAGAGGGGAGCCGAAAGAGAAGAACGCATCAGAGAGGAGTACTACAGGATTGCATCTGAGCAGCCTGATGCTGACTCCCGACCCCGATACTACCCGTCAGGACCTGGAGGGTCGTCAAGAGCACAATAG
Protein sequence

>MS.gene45017.t1

MAPKPQDTTNPKRRKGKECSGSSTFNPLNPRPIPPPNPPPSYHRFVSPEAEERFRVIEKFMWNKERGFNFYKLGKYPIFEDTFKQKGWEGIAKMVTEWGNATIAREFLVNALAEKKSDEHAYVRGKKVNYSAAAIRRVLKLRAVKTCDVEARRNTTDVFRSRAEWDMMREGKGWIGTVARPQRINTAELLPEYKAWASFILTVIDQTSSTAEMTRDRVLILLSVISDEEMDVAELMYKSLKKLISSPKQTLGHCCLINKLCEAAKVPTEPFDVYEKSLGFVSESVMRSFERDQAKYEKNYRRMQEQQGQPQMMEQDGVPQAQDISSSLRMPLPAFSEEFILLAADYRREPDVMTDAYSRFASPIEMEKYFDEERKRGAEREERIREEYYRIASEQPDADSRPRYYPSGPGGSSRAQ