Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45072.t1 | XP_003613272.1 | 97.9 | 860 | 18 | 0 | 1 | 860 | 13 | 872 | 0.00E+00 | 1550.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45072.t1 | Q9ZUI6 | 76.0 | 861 | 195 | 3 | 1 | 860 | 13 | 862 | 0.0e+00 | 1270.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45072.t1 | G7K1H7 | 97.9 | 860 | 18 | 0 | 1 | 860 | 13 | 872 | 0.0e+00 | 1550.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45072 | MS.gene021005 | PPI |
| MS.gene45072 | MS.gene75781 | PPI |
| MS.gene006488 | MS.gene45072 | PPI |
| MS.gene45072 | MS.gene017498 | PPI |
| MS.gene45072 | MS.gene29095 | PPI |
| MS.gene45072 | MS.gene052323 | PPI |
| MS.gene45072 | MS.gene031810 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45072.t1 | MTR_5g034780 | 98.256 | 860 | 15 | 0 | 1 | 860 | 13 | 872 | 0.0 | 1737 |
| MS.gene45072.t1 | MTR_8g063690 | 83.810 | 840 | 125 | 4 | 1 | 829 | 13 | 852 | 0.0 | 1385 |
| MS.gene45072.t1 | MTR_2g084610 | 31.281 | 601 | 381 | 14 | 1 | 583 | 12 | 598 | 2.22e-84 | 291 |
| MS.gene45072.t1 | MTR_8g072250 | 25.597 | 586 | 396 | 10 | 1 | 565 | 28 | 594 | 1.04e-54 | 205 |
| MS.gene45072.t1 | MTR_8g104380 | 23.786 | 412 | 269 | 8 | 14 | 411 | 32 | 412 | 1.39e-26 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45072.t1 | AT1G60070 | 76.682 | 862 | 187 | 4 | 1 | 860 | 13 | 862 | 0.0 | 1378 |
| MS.gene45072.t1 | AT1G60070 | 73.608 | 898 | 187 | 5 | 1 | 860 | 13 | 898 | 0.0 | 1360 |
| MS.gene45072.t1 | AT1G23900 | 76.416 | 865 | 198 | 6 | 1 | 860 | 1 | 864 | 0.0 | 1311 |
| MS.gene45072.t1 | AT1G23900 | 76.416 | 865 | 198 | 6 | 1 | 860 | 13 | 876 | 0.0 | 1310 |
| MS.gene45072.t1 | AT1G23900 | 76.416 | 865 | 198 | 6 | 1 | 860 | 13 | 876 | 0.0 | 1310 |
| MS.gene45072.t1 | AT1G23935 | 74.545 | 275 | 58 | 2 | 1 | 275 | 873 | 1135 | 5.22e-125 | 406 |
| MS.gene45072.t1 | AT1G23935 | 55.618 | 178 | 64 | 2 | 489 | 666 | 707 | 869 | 2.53e-43 | 171 |
| MS.gene45072.t1 | AT1G23935 | 67.327 | 101 | 33 | 0 | 494 | 594 | 1129 | 1229 | 3.17e-31 | 132 |
| MS.gene45072.t1 | AT1G23935 | 74.545 | 275 | 58 | 2 | 1 | 275 | 874 | 1136 | 6.19e-125 | 406 |
| MS.gene45072.t1 | AT1G23935 | 55.307 | 179 | 64 | 3 | 489 | 666 | 707 | 870 | 4.24e-42 | 167 |
| MS.gene45072.t1 | AT1G23935 | 67.327 | 101 | 33 | 0 | 494 | 594 | 1130 | 1230 | 3.43e-31 | 132 |
| MS.gene45072.t1 | AT1G23935 | 74.545 | 275 | 58 | 2 | 1 | 275 | 924 | 1186 | 1.18e-124 | 406 |
| MS.gene45072.t1 | AT1G23935 | 55.618 | 178 | 64 | 2 | 489 | 666 | 758 | 920 | 2.36e-43 | 171 |
| MS.gene45072.t1 | AT1G23935 | 67.327 | 101 | 33 | 0 | 494 | 594 | 1180 | 1280 | 3.11e-31 | 132 |
| MS.gene45072.t1 | AT5G22780 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.09e-81 | 284 |
| MS.gene45072.t1 | AT5G22780 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.09e-81 | 284 |
| MS.gene45072.t1 | AT5G22770 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.69e-81 | 283 |
| MS.gene45072.t1 | AT5G22770 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.69e-81 | 283 |
| MS.gene45072.t1 | AT5G22770 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.69e-81 | 283 |
| MS.gene45072.t1 | AT5G22770 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.69e-81 | 283 |
| MS.gene45072.t1 | AT5G22770 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.69e-81 | 283 |
| MS.gene45072.t1 | AT5G22770 | 29.118 | 601 | 394 | 13 | 1 | 583 | 10 | 596 | 1.69e-81 | 283 |
| MS.gene45072.t1 | AT1G31730 | 26.316 | 589 | 388 | 11 | 1 | 565 | 28 | 594 | 2.44e-62 | 228 |
| MS.gene45072.t1 | AT1G48760 | 24.940 | 417 | 272 | 7 | 14 | 420 | 31 | 416 | 9.61e-29 | 124 |
| MS.gene45072.t1 | AT1G48760 | 24.940 | 417 | 272 | 7 | 14 | 420 | 31 | 416 | 9.61e-29 | 124 |
| MS.gene45072.t1 | AT1G48760 | 24.940 | 417 | 272 | 7 | 14 | 420 | 31 | 416 | 9.61e-29 | 124 |
Find 203 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAACTCACCTAATATTT+TGG | 0.147177 | 5.3:-23757102 | None:intergenic |
| AACCATTCACTCACTGTTAT+TGG | 0.160729 | 5.3:-23755269 | None:intergenic |
| TGTCGAAAGGATGCCAATTT+TGG | 0.172595 | 5.3:+23757223 | MS.gene45072:CDS |
| GGTCACCTTCTTCCGAATAT+TGG | 0.202533 | 5.3:-23747861 | None:intergenic |
| TGCAACTATGGAGCATATTT+TGG | 0.229181 | 5.3:-23754000 | None:intergenic |
| CTTGGATACCCAACACATTT+TGG | 0.236434 | 5.3:+23747308 | MS.gene45072:CDS |
| AATAGCATCACCCGGATTTC+CGG | 0.266474 | 5.3:+23747352 | MS.gene45072:CDS |
| ACTGTTGTTTGTGGGTTTCC+TGG | 0.283918 | 5.3:-23758115 | None:intergenic |
| GGACTTGCACTCTGTGCTTT+AGG | 0.285793 | 5.3:+23747767 | MS.gene45072:CDS |
| TTGCTAAGCACCAAAATATT+AGG | 0.288469 | 5.3:+23757092 | MS.gene45072:CDS |
| ATTGCTTATCACAACAATTA+AGG | 0.290025 | 5.3:-23754999 | None:intergenic |
| TGGTTCAATGATGGATTTAT+TGG | 0.297276 | 5.3:+23757896 | MS.gene45072:CDS |
| GCTCCAGCACCTAGCTCTTC+TGG | 0.305136 | 5.3:+23757389 | MS.gene45072:CDS |
| TTGAACACACTCATATAAAA+TGG | 0.305593 | 5.3:-23752285 | None:intergenic |
| GTCACCTTCTTCCGAATATT+GGG | 0.305736 | 5.3:-23747860 | None:intergenic |
| ACTCTCCCTGCTGCTGGAAA+TGG | 0.316290 | 5.3:+23758722 | MS.gene45072:CDS |
| AGGATACTGTTTCAAAGAAT+TGG | 0.318181 | 5.3:-23747444 | None:intergenic |
| ATATCATACTCTGGTGAATA+AGG | 0.320441 | 5.3:-23750804 | None:intergenic |
| AGGATAGCATACAAGGTAAA+TGG | 0.321453 | 5.3:+23759355 | MS.gene45072:CDS |
| AACATTTAGGGACATGATTC+GGG | 0.322338 | 5.3:+23747148 | None:intergenic |
| TGTGACTCACTTTGCAACTA+TGG | 0.323398 | 5.3:-23754012 | None:intergenic |
| GAAAGATCTTGTCGATTATC+TGG | 0.331768 | 5.3:+23753941 | MS.gene45072:CDS |
| CAGATCCATTTCTCCACATT+AGG | 0.333047 | 5.3:+23750838 | MS.gene45072:CDS |
| CAGAAGCTCTTGAACATATT+AGG | 0.335757 | 5.3:+23749725 | MS.gene45072:CDS |
| AGATTACAGGCATCGTAATA+TGG | 0.338480 | 5.3:+23747262 | MS.gene45072:CDS |
| AAATGGCACAGATGTTCTTA+TGG | 0.339147 | 5.3:+23757728 | MS.gene45072:CDS |
| ACCGAGTCAAATAAAGTTGC+AGG | 0.340017 | 5.3:+23752257 | MS.gene45072:CDS |
| GCAGGTTTGGCTACCCCATT+CGG | 0.345484 | 5.3:-23757326 | None:intergenic |
| GAGTTACAGTGTGGTGCATT+GGG | 0.354210 | 5.3:+23755195 | MS.gene45072:CDS |
| ATGAAAATGACCAAGATTAC+AGG | 0.356460 | 5.3:+23747249 | MS.gene45072:CDS |
| AAAGTGGCCTCATCCAAAAT+TGG | 0.364215 | 5.3:-23757236 | None:intergenic |
| TAACATTTAGGGACATGATT+CGG | 0.366704 | 5.3:+23747147 | None:intergenic |
| AAACATTTGTTCAGCAGAAA+TGG | 0.366765 | 5.3:+23747790 | MS.gene45072:CDS |
| AGGCAGCATTGTGCTCTATA+AGG | 0.368802 | 5.3:+23749575 | MS.gene45072:intron |
| TTGGATGAGGCCACTTTCAT+AGG | 0.369361 | 5.3:+23757242 | MS.gene45072:CDS |
| AATATGTATATAGGAGGATT+GGG | 0.374085 | 5.3:+23756996 | MS.gene45072:intron |
| TATTCTCTTCTCCGGAAATC+CGG | 0.381958 | 5.3:-23747363 | None:intergenic |
| TACAAGAGGAGCTGCAGGTT+TGG | 0.387064 | 5.3:-23757339 | None:intergenic |
| CTTTCATAGGTAGGAGGGCT+GGG | 0.387591 | 5.3:+23757255 | MS.gene45072:CDS |
| CAAACCGCGACAACAATATC+AGG | 0.387659 | 5.3:+23752378 | MS.gene45072:CDS |
| ACGTGAAGAGAGCTTTAATA+AGG | 0.391168 | 5.3:-23755948 | None:intergenic |
| TCAATGTACCAGATCTTCTC+TGG | 0.391987 | 5.3:-23754534 | None:intergenic |
| CCTTGAACTTGTATATGTTC+TGG | 0.393157 | 5.3:+23753890 | MS.gene45072:CDS |
| TGCTATATTACTAGCACTTA+AGG | 0.394029 | 5.3:-23757811 | None:intergenic |
| AGCAACCTAATGTGGAGAAA+TGG | 0.397016 | 5.3:-23750843 | None:intergenic |
| AGCAATGCTTCTGAGCTTCA+TGG | 0.398053 | 5.3:+23755016 | MS.gene45072:CDS |
| ACTTTCATAGGTAGGAGGGC+TGG | 0.399420 | 5.3:+23757254 | MS.gene45072:CDS |
| CTACTGTAGATGAGCTGCTT+GGG | 0.400494 | 5.3:-23757779 | None:intergenic |
| TATTACGATGCCTGTAATCT+TGG | 0.400893 | 5.3:-23747259 | None:intergenic |
| GGCAATACTCTCCCTGCTGC+TGG | 0.403412 | 5.3:+23758716 | MS.gene45072:CDS |
| CCCTGCAACTTTATTTGACT+CGG | 0.403667 | 5.3:-23752258 | None:intergenic |
| GGTTCAATGATGGATTTATT+GGG | 0.405451 | 5.3:+23757897 | MS.gene45072:CDS |
| CTCTCCCTGCTGCTGGAAAT+GGG | 0.405514 | 5.3:+23758723 | MS.gene45072:CDS |
| ACAGAAATGCACGGATGGTT+TGG | 0.405537 | 5.3:+23750752 | MS.gene45072:intron |
| CAGGTTTGGCTACCCCATTC+GGG | 0.407546 | 5.3:-23757325 | None:intergenic |
| CCTGGATAACTGTTGTTTGT+GGG | 0.412716 | 5.3:-23758123 | None:intergenic |
| AATTTCGTGATCCCAATATT+CGG | 0.413552 | 5.3:+23747849 | MS.gene45072:CDS |
| TCACCAGAGTATGATATTGC+TGG | 0.413853 | 5.3:+23750810 | MS.gene45072:CDS |
| GAATATGTATATAGGAGGAT+TGG | 0.415097 | 5.3:+23756995 | MS.gene45072:intron |
| TTCAAATGCTGGTTCAATGA+TGG | 0.416947 | 5.3:+23757887 | MS.gene45072:CDS |
| GGCTGTAACTGCTGATGCTC+AGG | 0.418954 | 5.3:+23753706 | MS.gene45072:CDS |
| ATTTCAAACGTCTGCTGAGC+AGG | 0.422025 | 5.3:+23755066 | MS.gene45072:CDS |
| ATTCAGTAAGAGCATTATAC+AGG | 0.422269 | 5.3:+23755041 | MS.gene45072:CDS |
| GTTGGTCAAGCATCACAAAA+TGG | 0.423865 | 5.3:+23757711 | MS.gene45072:CDS |
| TCCTGCTACTTCCTTACTTA+GGG | 0.427313 | 5.3:+23749639 | MS.gene45072:CDS |
| TACCACAAAAGCAATGGCTT+TGG | 0.429449 | 5.3:+23755922 | MS.gene45072:CDS |
| ACCGACCCATTTCCAGCAGC+AGG | 0.431786 | 5.3:-23758728 | None:intergenic |
| ATCCTGCTACTTCCTTACTT+AGG | 0.437097 | 5.3:+23749638 | MS.gene45072:CDS |
| CTTCAGTCAGTCTCCCGAAT+GGG | 0.440375 | 5.3:+23757312 | MS.gene45072:CDS |
| CGTACTTGCCATCAATATCC+TGG | 0.441723 | 5.3:+23752343 | MS.gene45072:CDS |
| AATCTCTCGTCATGCGCATA+AGG | 0.443157 | 5.3:+23759335 | MS.gene45072:CDS |
| CGAGTTACAGTGTGGTGCAT+TGG | 0.445367 | 5.3:+23755194 | MS.gene45072:CDS |
| AACAAAATCTGTAAATGCAT+TGG | 0.447098 | 5.3:-23758167 | None:intergenic |
| GCCTGGATAACTGTTGTTTG+TGG | 0.447350 | 5.3:-23758124 | None:intergenic |
| CCAGAACATATACAAGTTCA+AGG | 0.450762 | 5.3:-23753890 | None:intergenic |
| GAGAAGAGAATAGGTTATCT+TGG | 0.453318 | 5.3:+23747374 | MS.gene45072:CDS |
| AGGAGGGCTGGGTCTTTACC+AGG | 0.453474 | 5.3:+23757266 | MS.gene45072:CDS |
| TGCAGTCTTGCATGCACGTA+TGG | 0.462281 | 5.3:-23747171 | None:intergenic |
| GCAGTTACAGACGGGTAAAC+CGG | 0.464049 | 5.3:-23758046 | None:intergenic |
| CCATTTGACCAAAATGTGTT+GGG | 0.464376 | 5.3:-23747316 | None:intergenic |
| GGATTTCCGGAGAAGAGAAT+AGG | 0.464626 | 5.3:+23747365 | MS.gene45072:CDS |
| TCGACAAGATCTTTCACTAA+AGG | 0.465473 | 5.3:-23753933 | None:intergenic |
| GAAATTATTGTACAGTTCAA+AGG | 0.466564 | 5.3:+23757019 | MS.gene45072:CDS |
| GGGAGAGTATTGCCACTAGC+TGG | 0.467900 | 5.3:-23758707 | None:intergenic |
| ACAAATTTGTAAAGGTAGCC+TGG | 0.467953 | 5.3:-23758141 | None:intergenic |
| TCTACTGTAGATGAGCTGCT+TGG | 0.469843 | 5.3:-23757780 | None:intergenic |
| TCATACAAATCAGTATATAG+TGG | 0.470269 | 5.3:+23747745 | MS.gene45072:CDS |
| ATTTCCTCCAGCCCGACAAC+AGG | 0.472163 | 5.3:+23757924 | MS.gene45072:CDS |
| CTAATGTTTATCCACATGCT+TGG | 0.477737 | 5.3:+23747290 | MS.gene45072:CDS |
| ATGGTATACAACCTGTTGTC+GGG | 0.478951 | 5.3:-23757935 | None:intergenic |
| GAATCTTCCCAGGATATTGA+TGG | 0.481891 | 5.3:-23752351 | None:intergenic |
| TCAAGAGCTACTTCAAATGC+TGG | 0.482567 | 5.3:+23757876 | MS.gene45072:CDS |
| AGGATTTAGACGCTTCAATT+CGG | 0.485355 | 5.3:+23753859 | MS.gene45072:intron |
| TTCATTTATTGAAGCACGAA+TGG | 0.488955 | 5.3:-23747231 | None:intergenic |
| CAACCGTATTGCTGTGATGC+TGG | 0.489609 | 5.3:-23757452 | None:intergenic |
| AGATCTACAAGAGGAGCTGC+AGG | 0.492236 | 5.3:-23757344 | None:intergenic |
| TCCATTTGACCAAAATGTGT+TGG | 0.494884 | 5.3:-23747317 | None:intergenic |
| CCCACAAACAACAGTTATCC+AGG | 0.497581 | 5.3:+23758123 | MS.gene45072:CDS |
| TATACAACCTGTTGTCGGGC+TGG | 0.500568 | 5.3:-23757931 | None:intergenic |
| ATAATGAGCATTGAAGATAA+TGG | 0.502977 | 5.3:+23752311 | MS.gene45072:CDS |
| AGATAACCTATTCTCTTCTC+CGG | 0.509082 | 5.3:-23747371 | None:intergenic |
| AAAATCTGTAAATGCATTGG+AGG | 0.510457 | 5.3:-23758164 | None:intergenic |
| CCACCAGAAGAGCTAGGTGC+TGG | 0.510895 | 5.3:-23757392 | None:intergenic |
| AAATTATTGTACAGTTCAAA+GGG | 0.511597 | 5.3:+23757020 | MS.gene45072:CDS |
| ATGGTGTTTCTCCCTAAGTA+AGG | 0.512558 | 5.3:-23749650 | None:intergenic |
| ATACCTTGGGGACTGCAGCC+TGG | 0.516401 | 5.3:-23758192 | None:intergenic |
| TTTGAAGTAGCTCTTGAAGA+AGG | 0.517790 | 5.3:-23757870 | None:intergenic |
| GATGAGCTGCTTGGGGCAGA+AGG | 0.517846 | 5.3:-23757771 | None:intergenic |
| TGGCATTAAACATGCTAATG+AGG | 0.519585 | 5.3:+23753684 | MS.gene45072:CDS |
| TGTAGCAATCTCTCAACCTC+TGG | 0.520848 | 5.3:-23747827 | None:intergenic |
| ATTCTCTTCTCCGGAAATCC+GGG | 0.521646 | 5.3:-23747362 | None:intergenic |
| AGATCATCCAATGGTGAAGT+AGG | 0.526886 | 5.3:-23757834 | None:intergenic |
| CATAAAGAAAGTTCCAGACT+TGG | 0.527479 | 5.3:+23749600 | MS.gene45072:CDS |
| GCGCATAAGGATAGCATACA+AGG | 0.531410 | 5.3:+23759348 | MS.gene45072:CDS |
| TATAGCACCTACTTCACCAT+TGG | 0.531717 | 5.3:+23757827 | MS.gene45072:CDS |
| TCCCTAAGTAAGGAAGTAGC+AGG | 0.532536 | 5.3:-23749640 | None:intergenic |
| AAAGTTTAAGCAACCTAATG+TGG | 0.534518 | 5.3:-23750851 | None:intergenic |
| CAATGTACCAGATCTTCTCT+GGG | 0.536921 | 5.3:-23754533 | None:intergenic |
| GGATATCTACCTTTCCATGT+TGG | 0.540070 | 5.3:-23758778 | None:intergenic |
| CCCTGCTGCTGGAAATGGGT+CGG | 0.540182 | 5.3:+23758727 | MS.gene45072:CDS |
| CTCCAGTAATTAAAACTCCA+TGG | 0.540315 | 5.3:-23749669 | None:intergenic |
| ATTGGAGGACAAATTTGTAA+AGG | 0.542585 | 5.3:-23758149 | None:intergenic |
| GACATGTTAGTCAATAATGT+TGG | 0.543349 | 5.3:+23755227 | MS.gene45072:CDS |
| TCAGTTTCTACAATTGCACT+TGG | 0.544816 | 5.3:+23758682 | MS.gene45072:intron |
| CTCTCAAAAGCAGTTACAGA+CGG | 0.544994 | 5.3:-23758055 | None:intergenic |
| TCAGTGATCTTGATTTCAGA+GGG | 0.545314 | 5.3:+23753967 | MS.gene45072:CDS |
| TTGAATAGAAAACAATGGAC+CGG | 0.547079 | 5.3:+23758027 | MS.gene45072:intron |
| TACTAATAGCCAACATGGAA+AGG | 0.549766 | 5.3:+23758769 | MS.gene45072:CDS |
| GCTCTTGAAGAAGGTGGAAG+TGG | 0.550765 | 5.3:-23757861 | None:intergenic |
| TTATCTTGAATAGAAAACAA+TGG | 0.554456 | 5.3:+23758022 | MS.gene45072:intron |
| TTTCCAGGCTGCAGTCCCCA+AGG | 0.559363 | 5.3:+23758189 | MS.gene45072:CDS |
| TCTGCTGCAATTCTAGCTCA+AGG | 0.559691 | 5.3:-23757045 | None:intergenic |
| TGATCCCAATATTCGGAAGA+AGG | 0.560101 | 5.3:+23747856 | MS.gene45072:CDS |
| ACAGCATACTCTGAACAAGA+AGG | 0.560555 | 5.3:-23755974 | None:intergenic |
| TACTGTAGATGAGCTGCTTG+GGG | 0.560636 | 5.3:-23757778 | None:intergenic |
| CATGGTATACAACCTGTTGT+CGG | 0.561303 | 5.3:-23757936 | None:intergenic |
| CCTTCAGTCAGTCTCCCGAA+TGG | 0.561715 | 5.3:+23757311 | MS.gene45072:CDS |
| AAGACAAGAAGTTCTAATGT+TGG | 0.563242 | 5.3:+23747418 | MS.gene45072:CDS |
| GGCTCGTGATCTTGCACCAG+AGG | 0.563517 | 5.3:+23747811 | MS.gene45072:CDS |
| AGCCCTCCTACCTATGAAAG+TGG | 0.574454 | 5.3:-23757252 | None:intergenic |
| TCTCCAGCATCACAGCAATA+CGG | 0.574844 | 5.3:+23757449 | MS.gene45072:CDS |
| ATGAGGCCACTTTCATAGGT+AGG | 0.576547 | 5.3:+23757246 | MS.gene45072:CDS |
| CACATTCTAGAATTGTTGCA+CGG | 0.577923 | 5.3:-23753742 | None:intergenic |
| GTCAGTGATCTTGATTTCAG+AGG | 0.578129 | 5.3:+23753966 | MS.gene45072:CDS |
| AGGCCACTTTCATAGGTAGG+AGG | 0.578985 | 5.3:+23757249 | MS.gene45072:CDS |
| CATACAAATCAGTATATAGT+GGG | 0.580791 | 5.3:+23747746 | MS.gene45072:CDS |
| GTGTGGTGCATTGGGGAGTA+CGG | 0.585165 | 5.3:+23755203 | MS.gene45072:CDS |
| TCTCAAAAGCAGTTACAGAC+GGG | 0.590255 | 5.3:-23758054 | None:intergenic |
| CAGCATACTCTGAACAAGAA+GGG | 0.593388 | 5.3:-23755973 | None:intergenic |
| GTACTTGCCATCAATATCCT+GGG | 0.594796 | 5.3:+23752344 | MS.gene45072:CDS |
| GAAATTGAATGTCACCCTCA+AGG | 0.597529 | 5.3:-23758083 | None:intergenic |
| GGCATTAAACATGCTAATGA+GGG | 0.598945 | 5.3:+23753685 | MS.gene45072:CDS |
| AAATCGCCACCAGAAGAGCT+AGG | 0.599329 | 5.3:-23757398 | None:intergenic |
| CAGAACATATACAAGTTCAA+GGG | 0.602972 | 5.3:-23753889 | None:intergenic |
| GGCCACTTTCATAGGTAGGA+GGG | 0.603356 | 5.3:+23757250 | MS.gene45072:CDS |
| GGTAAATGGCAAAGATACAC+TGG | 0.604567 | 5.3:+23759369 | MS.gene45072:CDS |
| TAAACCTGATATTGTTGTCG+CGG | 0.605085 | 5.3:-23752382 | None:intergenic |
| TATGAATGACATACTTGCCC+AGG | 0.605875 | 5.3:+23750914 | MS.gene45072:CDS |
| CTCAAGTTAATAGCATCACC+CGG | 0.607786 | 5.3:+23747344 | MS.gene45072:CDS |
| CCGAGTCAAATAAAGTTGCA+GGG | 0.609290 | 5.3:+23752258 | MS.gene45072:CDS |
| CTGATGCTCAGGCAGTGCAG+AGG | 0.609650 | 5.3:+23753717 | MS.gene45072:CDS |
| TTATTACAGAAATGCACGGA+TGG | 0.610555 | 5.3:+23750747 | MS.gene45072:intron |
| GTTGCTGTAGAAGCGGCACC+TGG | 0.610605 | 5.3:-23757284 | None:intergenic |
| TTCAGTCAGTCTCCCGAATG+GGG | 0.611136 | 5.3:+23757313 | MS.gene45072:CDS |
| AGAGTTACTAATAGCCAACA+TGG | 0.611713 | 5.3:+23758764 | MS.gene45072:CDS |
| AGATCTTACCACAAAAGCAA+TGG | 0.613491 | 5.3:+23755916 | MS.gene45072:CDS |
| ACAATTATTACAGAAATGCA+CGG | 0.614154 | 5.3:+23750743 | MS.gene45072:intron |
| ACCCTCTTCCTTCAGATACG+TGG | 0.615896 | 5.3:+23753664 | MS.gene45072:intron |
| GAAGTAGCTCTTGAAGAAGG+TGG | 0.619574 | 5.3:-23757867 | None:intergenic |
| TTCAATTTCTCAAAACAACC+AGG | 0.620456 | 5.3:+23758097 | MS.gene45072:CDS |
| AGATCAAGTAGATCTACAAG+AGG | 0.621428 | 5.3:-23757353 | None:intergenic |
| AGCTCTTGAACATATTAGGA+AGG | 0.621863 | 5.3:+23749729 | MS.gene45072:CDS |
| ACAACCTGTTGTCGGGCTGG+AGG | 0.622164 | 5.3:-23757928 | None:intergenic |
| TTGTGGTAAGATCTGATGCA+TGG | 0.622998 | 5.3:-23755907 | None:intergenic |
| TTGCACTTGGATCCAGCTAG+TGG | 0.624597 | 5.3:+23758695 | MS.gene45072:CDS |
| GGTTTGACAAGAATCTTCCC+AGG | 0.624853 | 5.3:-23752361 | None:intergenic |
| TCAATGATGGATTTATTGGG+TGG | 0.626028 | 5.3:+23757900 | MS.gene45072:CDS |
| GGCAAAGATACACTGGAGGA+AGG | 0.626910 | 5.3:+23759376 | MS.gene45072:CDS |
| AACAATTCTAGAATGTGTGA+AGG | 0.630176 | 5.3:+23753748 | MS.gene45072:CDS |
| AGTTACAGTGTGGTGCATTG+GGG | 0.632366 | 5.3:+23755196 | MS.gene45072:CDS |
| GTACATTGATCAGATGCTGA+AGG | 0.632395 | 5.3:+23754548 | MS.gene45072:CDS |
| AGGTGCAGTTGCTGTAGAAG+CGG | 0.632527 | 5.3:-23757291 | None:intergenic |
| GAGACAGATCAACACCAAGA+AGG | 0.633065 | 5.3:-23757430 | None:intergenic |
| CCAGCACCTAGCTCTTCTGG+TGG | 0.634162 | 5.3:+23757392 | MS.gene45072:CDS |
| ATATGTATATAGGAGGATTG+GGG | 0.638497 | 5.3:+23756997 | MS.gene45072:intron |
| ATGCCAGCAATATCATACTC+TGG | 0.639466 | 5.3:-23750813 | None:intergenic |
| GGTGACTGAGTCAGATGCAG+TGG | 0.642368 | 5.3:+23755859 | MS.gene45072:intron |
| CCGACCCATTTCCAGCAGCA+GGG | 0.648342 | 5.3:-23758727 | None:intergenic |
| AAGACTGCAGCAGAAGAGCG+TGG | 0.648635 | 5.3:+23747185 | MS.gene45072:CDS |
| GCAGATCTACTCTTGTCGAA+AGG | 0.659300 | 5.3:+23757210 | MS.gene45072:intron |
| GAGAGCTATTGAATTCAACT+CGG | 0.665269 | 5.3:+23757066 | MS.gene45072:CDS |
| ATGAGCATTGAAGATAATGG+TGG | 0.671303 | 5.3:+23752314 | MS.gene45072:CDS |
| GATGCTGAAGGTTCTGACTG+AGG | 0.671403 | 5.3:+23754560 | MS.gene45072:CDS |
| TTCAGTAAGAGCATTATACA+GGG | 0.676395 | 5.3:+23755042 | MS.gene45072:CDS |
| GTGTTGGGTATCCAAGCATG+TGG | 0.688619 | 5.3:-23747301 | None:intergenic |
| TTACTTAGGGAGAAACACCA+TGG | 0.698350 | 5.3:+23749652 | MS.gene45072:CDS |
| TTTCATCAAGAAGCAACATG+AGG | 0.698564 | 5.3:-23747397 | None:intergenic |
| CTCTAGTTCGAGTTACAGTG+TGG | 0.702498 | 5.3:+23755186 | MS.gene45072:CDS |
| AAATGGCAAAGATACACTGG+AGG | 0.707744 | 5.3:+23759372 | MS.gene45072:CDS |
| CCATTCGGGAGACTGACTGA+AGG | 0.712550 | 5.3:-23757311 | None:intergenic |
| AATGTACCAGATCTTCTCTG+GGG | 0.736435 | 5.3:-23754532 | None:intergenic |
| CAGTGATCTTGATTTCAGAG+GGG | 0.749568 | 5.3:+23753968 | MS.gene45072:CDS |
| AGTGGTGAGAGATCATCCAA+TGG | 0.749941 | 5.3:-23757843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 23747161 | 23759429 | 23747161 | ID=MS.gene45072 |
| chr5.3 | mRNA | 23747161 | 23759429 | 23747161 | ID=MS.gene45072.t1;Parent=MS.gene45072 |
| chr5.3 | exon | 23747161 | 23747459 | 23747161 | ID=MS.gene45072.t1.exon1;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23747161 | 23747459 | 23747161 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23747736 | 23747877 | 23747736 | ID=MS.gene45072.t1.exon2;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23747736 | 23747877 | 23747736 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23749577 | 23749750 | 23749577 | ID=MS.gene45072.t1.exon3;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23749577 | 23749750 | 23749577 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23750756 | 23750935 | 23750756 | ID=MS.gene45072.t1.exon4;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23750756 | 23750935 | 23750756 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23752245 | 23752399 | 23752245 | ID=MS.gene45072.t1.exon5;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23752245 | 23752399 | 23752245 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23753679 | 23753769 | 23753679 | ID=MS.gene45072.t1.exon6;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23753679 | 23753769 | 23753679 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23753861 | 23754024 | 23753861 | ID=MS.gene45072.t1.exon7;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23753861 | 23754024 | 23753861 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23754527 | 23754581 | 23754527 | ID=MS.gene45072.t1.exon8;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23754527 | 23754581 | 23754527 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23754965 | 23755087 | 23754965 | ID=MS.gene45072.t1.exon9;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23754965 | 23755087 | 23754965 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23755182 | 23755277 | 23755182 | ID=MS.gene45072.t1.exon10;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23755182 | 23755277 | 23755182 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23755860 | 23755987 | 23755860 | ID=MS.gene45072.t1.exon11;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23755860 | 23755987 | 23755860 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23757009 | 23757113 | 23757009 | ID=MS.gene45072.t1.exon12;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23757009 | 23757113 | 23757009 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23757214 | 23757470 | 23757214 | ID=MS.gene45072.t1.exon13;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23757214 | 23757470 | 23757214 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23757709 | 23757945 | 23757709 | ID=MS.gene45072.t1.exon14;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23757709 | 23757945 | 23757709 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23758035 | 23758210 | 23758035 | ID=MS.gene45072.t1.exon15;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23758035 | 23758210 | 23758035 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23758686 | 23758790 | 23758686 | ID=MS.gene45072.t1.exon16;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23758686 | 23758790 | 23758686 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| chr5.3 | exon | 23759334 | 23759429 | 23759334 | ID=MS.gene45072.t1.exon17;Parent=MS.gene45072.t1 |
| chr5.3 | CDS | 23759334 | 23759429 | 23759334 | ID=cds.MS.gene45072.t1;Parent=MS.gene45072.t1 |
| Gene Sequence |
| Protein sequence |
