Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021005.t1 | XP_003618095.1 | 99.4 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 4.30E-82 | 313.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021005.t1 | Q8LEZ8 | 91.9 | 161 | 13 | 0 | 1 | 161 | 1 | 161 | 6.9e-81 | 301.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021005.t1 | G7KFD7 | 99.4 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 3.1e-82 | 313.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021005.t1 | MTR_5g098940 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 7.63e-118 | 330 |
| MS.gene021005.t1 | MTR_5g087820 | 81.988 | 161 | 29 | 0 | 1 | 161 | 25 | 185 | 6.05e-100 | 285 |
| MS.gene021005.t1 | MTR_1g025190 | 54.610 | 141 | 64 | 0 | 1 | 141 | 1 | 141 | 2.33e-53 | 166 |
| MS.gene021005.t1 | MTR_7g100010 | 43.478 | 138 | 78 | 0 | 2 | 139 | 3 | 140 | 8.18e-40 | 131 |
| MS.gene021005.t1 | MTR_8g102180 | 43.478 | 138 | 78 | 0 | 2 | 139 | 3 | 140 | 8.18e-40 | 131 |
| MS.gene021005.t1 | MTR_8g077600 | 37.195 | 164 | 93 | 2 | 1 | 159 | 1 | 159 | 4.12e-32 | 112 |
| MS.gene021005.t1 | MTR_8g077600 | 35.556 | 90 | 53 | 1 | 1 | 85 | 1 | 90 | 3.39e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021005.t1 | AT2G17380 | 91.925 | 161 | 13 | 0 | 1 | 161 | 1 | 161 | 9.64e-112 | 314 |
| MS.gene021005.t1 | AT4G35410 | 90.683 | 161 | 15 | 0 | 1 | 161 | 1 | 161 | 2.26e-109 | 308 |
| MS.gene021005.t1 | AT4G35410 | 91.837 | 98 | 8 | 0 | 1 | 98 | 1 | 98 | 8.52e-66 | 196 |
| MS.gene021005.t1 | AT1G47830 | 53.191 | 141 | 66 | 0 | 1 | 141 | 1 | 141 | 1.80e-52 | 164 |
| MS.gene021005.t1 | AT2G19790 | 42.754 | 138 | 79 | 0 | 2 | 139 | 3 | 140 | 5.89e-39 | 129 |
| MS.gene021005.t1 | AT3G50860 | 37.342 | 158 | 88 | 2 | 1 | 153 | 1 | 152 | 7.54e-31 | 109 |
| MS.gene021005.t1 | AT3G50860 | 37.857 | 140 | 82 | 1 | 1 | 135 | 1 | 140 | 1.19e-30 | 108 |
Find 29 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATAAAGTTGTTTATAAA+AGG | 0.214674 | 5.1:-80276988 | MS.gene021005:intron |
| GAGATTCTTGATCGGTATTT+TGG | 0.252220 | 5.1:-80276784 | MS.gene021005:CDS |
| AATTTCATCAAGTATATAAT+AGG | 0.297509 | 5.1:+80276226 | None:intergenic |
| TCTAATTGCTGGCGAGCTTC+AGG | 0.306112 | 5.1:-80276204 | MS.gene021005:CDS |
| CATTGTCTTTCAGGATTCAT+TGG | 0.310542 | 5.1:-80276069 | MS.gene021005:intron |
| ATCGCACAAGCTACTAAATA+AGG | 0.320939 | 5.1:-80276005 | None:intergenic |
| CTTCTTTCCTTCTGAGTGTA+AGG | 0.334840 | 5.1:+80277246 | None:intergenic |
| CTTGATGAAATTCTAATTGC+TGG | 0.336106 | 5.1:-80276215 | MS.gene021005:CDS |
| CAATTTGCAGGTCTGTGAAT+TGG | 0.375542 | 5.1:-80276654 | MS.gene021005:intron |
| CTCTACAAAATTACAGAGCT+TGG | 0.403422 | 5.1:+80277018 | None:intergenic |
| GGAAGGTTAGGCTCACAAAA+TGG | 0.441892 | 5.1:-80277275 | MS.gene021005:CDS |
| TGATGATGCTGACAACGAAT+TGG | 0.451575 | 5.1:-80276836 | MS.gene021005:CDS |
| CTTGATATTCAACTTCCATA+AGG | 0.468058 | 5.1:-80276630 | MS.gene021005:intron |
| GATAATATTACTCAAGGAAC+TGG | 0.478446 | 5.1:+80276025 | None:intergenic |
| TTAGTCGTCAAGGGAAGGTT+AGG | 0.481414 | 5.1:-80277287 | MS.gene021005:CDS |
| CACTCAGAAGGAAAGAAGTA+AGG | 0.487202 | 5.1:-80277241 | MS.gene021005:intron |
| TCTACAAAATTACAGAGCTT+GGG | 0.509679 | 5.1:+80277019 | None:intergenic |
| GTGCTTCTCATTAGTCGTCA+AGG | 0.528040 | 5.1:-80277297 | MS.gene021005:CDS |
| TGCTCGGTTGATAGCTGCAC+AGG | 0.540072 | 5.1:-80276162 | MS.gene021005:intron |
| TGTCTTTCAGGATTCATTGG+TGG | 0.541167 | 5.1:-80276066 | MS.gene021005:intron |
| TGCTTCTCATTAGTCGTCAA+GGG | 0.558103 | 5.1:-80277296 | MS.gene021005:CDS |
| AATTACAGAGCTTGGGAGCA+CGG | 0.567062 | 5.1:+80277026 | None:intergenic |
| GAATCACTCCACTGAGCTCA+CGG | 0.569834 | 5.1:+80277053 | None:intergenic |
| TCTCATTAGTCGTCAAGGGA+AGG | 0.585870 | 5.1:-80277292 | MS.gene021005:CDS |
| TTGTGCGATAATATTACTCA+AGG | 0.602166 | 5.1:+80276019 | None:intergenic |
| ATTGGTGGAGACTGCTAAGG+AGG | 0.602252 | 5.1:-80276051 | MS.gene021005:CDS |
| GTATTCACCTTACACTCAGA+AGG | 0.607833 | 5.1:-80277253 | MS.gene021005:CDS |
| TTCATTGGTGGAGACTGCTA+AGG | 0.613718 | 5.1:-80276054 | MS.gene021005:CDS |
| AAGGTAATCCGTGAGCTCAG+TGG | 0.653418 | 5.1:-80277061 | MS.gene021005:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGAATGTATTTTTATA+CGG | - | chr5.1:80276600-80276619 | MS.gene021005:intron | 10.0% |
| !! | AATAAATCTTAAAAGCTATA+AGG | + | chr5.1:80276351-80276370 | None:intergenic | 15.0% |
| !! | AATTTCATCAAGTATATAAT+AGG | + | chr5.1:80277991-80278010 | None:intergenic | 15.0% |
| !! | ATATTATATCCTTAAGAAAA+GGG | + | chr5.1:80277495-80277514 | None:intergenic | 15.0% |
| !! | GAAATATATTACATTAAACT+TGG | + | chr5.1:80277803-80277822 | None:intergenic | 15.0% |
| !! | GATATAAAGTTGTTTATAAA+AGG | - | chr5.1:80277226-80277245 | MS.gene021005:intron | 15.0% |
| !! | TATATCCATAATTCAAAATA+AGG | - | chr5.1:80277629-80277648 | MS.gene021005:intron | 15.0% |
| !! | TATATTATATCCTTAAGAAA+AGG | + | chr5.1:80277496-80277515 | None:intergenic | 15.0% |
| !!! | GTAAAAAAATAAGTCTTTTT+TGG | + | chr5.1:80276322-80276341 | None:intergenic | 15.0% |
| !!! | TCTTTAAAAACTTAAATGTA+TGG | + | chr5.1:80276502-80276521 | None:intergenic | 15.0% |
| !! | ATTATCTGTATGTATTAACA+TGG | - | chr5.1:80277041-80277060 | MS.gene021005:CDS | 20.0% |
| !! | TATTTCCATAATTCAAAACA+AGG | - | chr5.1:80277817-80277836 | MS.gene021005:intron | 20.0% |
| !!! | ATCTCATATTTTTATTGACA+AGG | - | chr5.1:80277134-80277153 | MS.gene021005:intron | 20.0% |
| !!! | GAACTTTTAAATGAAATGAA+TGG | - | chr5.1:80276806-80276825 | MS.gene021005:CDS | 20.0% |
| !!! | TTTTAAATGAAATGAATGGT+AGG | - | chr5.1:80276810-80276829 | MS.gene021005:CDS | 20.0% |
| ! | AAGACAATGTCATACAAATT+TGG | + | chr5.1:80278134-80278153 | None:intergenic | 25.0% |
| ! | ACCATGAAAGGATTATTAAT+AGG | + | chr5.1:80277676-80277695 | None:intergenic | 25.0% |
| ! | AGATGTAAATACACATATCA+AGG | + | chr5.1:80277118-80277137 | None:intergenic | 25.0% |
| ! | ATCGCTTATTCTCTTTATTA+TGG | - | chr5.1:80277009-80277028 | MS.gene021005:CDS | 25.0% |
| ! | ATTCCAAGTACAAAAATACA+AGG | + | chr5.1:80276734-80276753 | None:intergenic | 25.0% |
| ! | CATGATTAAAAACAAAGAAC+AGG | + | chr5.1:80277963-80277982 | None:intergenic | 25.0% |
| ! | GATATATATCGCATTAAACT+TGG | + | chr5.1:80277615-80277634 | None:intergenic | 25.0% |
| ! | GATTATTAATAGGAGTTACA+GGG | + | chr5.1:80277666-80277685 | None:intergenic | 25.0% |
| ! | TAATAAAGAGAATAAGCGAT+AGG | + | chr5.1:80277009-80277028 | None:intergenic | 25.0% |
| ! | TAGAAATCCTATTAACAACT+GGG | + | chr5.1:80276849-80276868 | None:intergenic | 25.0% |
| ! | TATTAATAATCCTTTCATGG+TGG | - | chr5.1:80277675-80277694 | MS.gene021005:intron | 25.0% |
| ! | TCCTATTAATAATCCTTTCA+TGG | - | chr5.1:80277672-80277691 | MS.gene021005:intron | 25.0% |
| ! | TTAGAAATCCTATTAACAAC+TGG | + | chr5.1:80276850-80276869 | None:intergenic | 25.0% |
| !! | TGAAATGATTCATCATTTTG+TGG | - | chr5.1:80277408-80277427 | MS.gene021005:intron | 25.0% |
| !!! | CTGTTCTTTGTTTTTAATCA+TGG | - | chr5.1:80277961-80277980 | MS.gene021005:intron | 25.0% |
| !!! | TCTTTGTTTTTAATCATGGA+AGG | - | chr5.1:80277965-80277984 | MS.gene021005:intron | 25.0% |
| AAGAAGAAGAAGAAGAAGAA+AGG | + | chr5.1:80276026-80276045 | None:intergenic | 30.0% | |
| ACTAGACCAATAATAATGAC+AGG | + | chr5.1:80277926-80277945 | None:intergenic | 30.0% | |
| ACTAGACTGAATATAAAGAC+AGG | + | chr5.1:80277738-80277757 | None:intergenic | 30.0% | |
| AGCAGATATTCATTATACCA+TGG | + | chr5.1:80277324-80277343 | None:intergenic | 30.0% | |
| CACAAAGTGTATCTACATTT+AGG | + | chr5.1:80276900-80276919 | None:intergenic | 30.0% | |
| CTGATTCCATAAATGATTCA+TGG | - | chr5.1:80276468-80276487 | MS.gene021005:intron | 30.0% | |
| CTTGATATTCAACTTCCATA+AGG | - | chr5.1:80277584-80277603 | MS.gene021005:intron | 30.0% | |
| CTTGATGAAATTCTAATTGC+TGG | - | chr5.1:80277999-80278018 | MS.gene021005:intron | 30.0% | |
| GAATATAAAGACAGGTGATA+TGG | + | chr5.1:80277730-80277749 | None:intergenic | 30.0% | |
| GATAATATTACTCAAGGAAC+TGG | + | chr5.1:80278192-80278211 | None:intergenic | 30.0% | |
| GGATTATTAATAGGAGTTAC+AGG | + | chr5.1:80277667-80277686 | None:intergenic | 30.0% | |
| TCTACAAAATTACAGAGCTT+GGG | + | chr5.1:80277198-80277217 | None:intergenic | 30.0% | |
| TTAAACTTGGACATACCTTA+TGG | + | chr5.1:80277602-80277621 | None:intergenic | 30.0% | |
| TTCTATTCAACTAAAACACG+AGG | + | chr5.1:80276409-80276428 | None:intergenic | 30.0% | |
| TTGTGCGATAATATTACTCA+AGG | + | chr5.1:80278198-80278217 | None:intergenic | 30.0% | |
| TTTGTATGACATTGTCTTTC+AGG | - | chr5.1:80278136-80278155 | MS.gene021005:intron | 30.0% | |
| ! | AACAGCATTCTTTTGTGTTT+TGG | - | chr5.1:80276673-80276692 | MS.gene021005:intron | 30.0% |
| ! | ACAGCATTCTTTTGTGTTTT+GGG | - | chr5.1:80276674-80276693 | MS.gene021005:intron | 30.0% |
| ! | ATCAATGGTCTTTCTCTTTT+GGG | - | chr5.1:80278076-80278095 | MS.gene021005:intron | 30.0% |
| ! | ATTTTGTGGAGATTCTTGAT+CGG | - | chr5.1:80277422-80277441 | MS.gene021005:intron | 30.0% |
| ! | GTTTTCGTAATTCGTAAATC+AGG | - | chr5.1:80276215-80276234 | MS.gene021005:CDS | 30.0% |
| ! | TAAATCAGGATGGATAGTTT+TGG | - | chr5.1:80276229-80276248 | MS.gene021005:CDS | 30.0% |
| ! | TATCAATGGTCTTTCTCTTT+TGG | - | chr5.1:80278075-80278094 | MS.gene021005:intron | 30.0% |
| ! | TATTAACATGGTGATAGTGA+TGG | - | chr5.1:80277053-80277072 | MS.gene021005:CDS | 30.0% |
| ! | TGATTGAATTCTGAAAGTCT+AGG | - | chr5.1:80276784-80276803 | MS.gene021005:CDS | 30.0% |
| !! | AAAAGAATGCTGTTTCATCA+TGG | + | chr5.1:80276667-80276686 | None:intergenic | 30.0% |
| !! | TCACCTTGTATTTTTGTACT+TGG | - | chr5.1:80276728-80276747 | MS.gene021005:intron | 30.0% |
| !!! | GTAGGCCTTATTTTGAATTA+TGG | + | chr5.1:80277637-80277656 | None:intergenic | 30.0% |
| AAACAAAGAACAGGTCAGAA+GGG | + | chr5.1:80277766-80277785 | None:intergenic | 35.0% | |
| AATAATAATGACAGGCGATG+TGG | + | chr5.1:80277918-80277937 | None:intergenic | 35.0% | |
| ACATCGCCTGTCATTATTAT+TGG | - | chr5.1:80277917-80277936 | MS.gene021005:intron | 35.0% | |
| AGGATGTTTATCATGCAATG+TGG | + | chr5.1:80277098-80277117 | None:intergenic | 35.0% | |
| ATTTATGGAATCAGCAGTGT+TGG | + | chr5.1:80276462-80276481 | None:intergenic | 35.0% | |
| CATGATCACAAACAAAGAAC+AGG | + | chr5.1:80277775-80277794 | None:intergenic | 35.0% | |
| CATTGTCTTTCAGGATTCAT+TGG | - | chr5.1:80278145-80278164 | MS.gene021005:intron | 35.0% | |
| CTCTACAAAATTACAGAGCT+TGG | + | chr5.1:80277199-80277218 | None:intergenic | 35.0% | |
| CTGAATATGCATGCTGTTAT+AGG | - | chr5.1:80276112-80276131 | MS.gene021005:intron | 35.0% | |
| GCTTGATGTTTAATTGACCA+TGG | - | chr5.1:80277304-80277323 | MS.gene021005:CDS | 35.0% | |
| GTGTATCTACATTTAGGAAG+AGG | + | chr5.1:80276894-80276913 | None:intergenic | 35.0% | |
| GTGTCACACTAACTTGATAA+TGG | - | chr5.1:80277529-80277548 | MS.gene021005:intron | 35.0% | |
| TCCATAAATGATTCATGGCT+TGG | - | chr5.1:80276473-80276492 | MS.gene021005:intron | 35.0% | |
| TCGTAATTCGTAAATCAGGA+TGG | - | chr5.1:80276219-80276238 | MS.gene021005:CDS | 35.0% | |
| ! | AGCTCTGTAATTTTGTAGAG+TGG | - | chr5.1:80277199-80277218 | MS.gene021005:intron | 35.0% |
| ! | CTGTTCTTTGTTTGTGATCA+TGG | - | chr5.1:80277773-80277792 | MS.gene021005:intron | 35.0% |
| ! | GAGATTCTTGATCGGTATTT+TGG | - | chr5.1:80277430-80277449 | MS.gene021005:intron | 35.0% |
| ! | TCTTTGTTTGTGATCATGGA+AGG | - | chr5.1:80277777-80277796 | MS.gene021005:intron | 35.0% |
| ! | TGTAATTTTGTAGAGTGGAG+AGG | - | chr5.1:80277204-80277223 | MS.gene021005:intron | 35.0% |
| ! | TTGAAGAGTCCCTTTTCTTA+AGG | - | chr5.1:80277483-80277502 | MS.gene021005:intron | 35.0% |
| !! | CAGCTTTATAGTCTTTTGCA+AGG | - | chr5.1:80277267-80277286 | MS.gene021005:CDS | 35.0% |
| !!! | GTAGGCCTTGTTTTGAATTA+TGG | + | chr5.1:80277825-80277844 | None:intergenic | 35.0% |
| ATGGTCACTTGTCAATTTGC+AGG | - | chr5.1:80277548-80277567 | MS.gene021005:intron | 40.0% | |
| CAAACAAAGAACAGGTCAGA+AGG | + | chr5.1:80277767-80277786 | None:intergenic | 40.0% | |
| CAATTTGCAGGTCTGTGAAT+TGG | - | chr5.1:80277560-80277579 | MS.gene021005:intron | 40.0% | |
| CACTCAGAAGGAAAGAAGTA+AGG | - | chr5.1:80276973-80276992 | MS.gene021005:intron | 40.0% | |
| CGAGCAAAAAAACTGTTGCT+CGG | - | chr5.1:80278036-80278055 | MS.gene021005:intron | 40.0% | |
| CTTCTTTCCTTCTGAGTGTA+AGG | + | chr5.1:80276971-80276990 | None:intergenic | 40.0% | |
| GAGGAGTGAGTAAAATTGAG+AGG | + | chr5.1:80276390-80276409 | None:intergenic | 40.0% | |
| GCCAAGCCATGAATCATTTA+TGG | + | chr5.1:80276477-80276496 | None:intergenic | 40.0% | |
| GGAGTTACAGGGAAATAAGT+AGG | + | chr5.1:80277655-80277674 | None:intergenic | 40.0% | |
| GGAGTTACAGGGAATTAAGT+AGG | + | chr5.1:80277843-80277862 | None:intergenic | 40.0% | |
| GGTGATATGGTCAACAATCA+AGG | + | chr5.1:80277717-80277736 | None:intergenic | 40.0% | |
| GTATTCACCTTACACTCAGA+AGG | - | chr5.1:80276961-80276980 | MS.gene021005:intron | 40.0% | |
| TAATTGAGGCTCATTCAGTG+TGG | + | chr5.1:80277891-80277910 | None:intergenic | 40.0% | |
| TGCTTCTCATTAGTCGTCAA+GGG | - | chr5.1:80276918-80276937 | MS.gene021005:intron | 40.0% | |
| TGTCTTTCAGGATTCATTGG+TGG | - | chr5.1:80278148-80278167 | MS.gene021005:intron | 40.0% | |
| TTGCAAGGCAATCTTCTGTT+TGG | - | chr5.1:80277282-80277301 | MS.gene021005:CDS | 40.0% | |
| ! | TATACGGTGTCAACTTTGTG+TGG | - | chr5.1:80276616-80276635 | MS.gene021005:intron | 40.0% |
| ! | TGATGATGCTGACAACGAAT+TGG | - | chr5.1:80277378-80277397 | MS.gene021005:intron | 40.0% |
| !! | AATCAGCAGTGTTGGCTAAT+TGG | + | chr5.1:80276454-80276473 | None:intergenic | 40.0% |
| !! | ATCAGCAGTGTTGGCTAATT+GGG | + | chr5.1:80276453-80276472 | None:intergenic | 40.0% |
| AATTACAGAGCTTGGGAGCA+CGG | + | chr5.1:80277191-80277210 | None:intergenic | 45.0% | |
| CAATCAAGGCTCATTCAGTG+TGG | + | chr5.1:80277703-80277722 | None:intergenic | 45.0% | |
| CCTATTAACAACTGGGAGAG+AGG | + | chr5.1:80276842-80276861 | None:intergenic | 45.0% | |
| CCTCTCTCCCAGTTGTTAAT+AGG | - | chr5.1:80276839-80276858 | MS.gene021005:CDS | 45.0% | |
| GATAGCTGCACAGGTATCAA+TGG | - | chr5.1:80278061-80278080 | MS.gene021005:intron | 45.0% | |
| GGAAGGTTAGGCTCACAAAA+TGG | - | chr5.1:80276939-80276958 | MS.gene021005:intron | 45.0% | |
| GGCGATGTGGTCAATAATTG+AGG | + | chr5.1:80277905-80277924 | None:intergenic | 45.0% | |
| GTGATGCGATCAAGTCTGTT+TGG | - | chr5.1:80276251-80276270 | MS.gene021005:intron | 45.0% | |
| GTGCTTCTCATTAGTCGTCA+AGG | - | chr5.1:80276917-80276936 | MS.gene021005:intron | 45.0% | |
| TCTCATTAGTCGTCAAGGGA+AGG | - | chr5.1:80276922-80276941 | MS.gene021005:intron | 45.0% | |
| TTAGTCGTCAAGGGAAGGTT+AGG | - | chr5.1:80276927-80276946 | MS.gene021005:intron | 45.0% | |
| TTCATTGGTGGAGACTGCTA+AGG | - | chr5.1:80278160-80278179 | MS.gene021005:intron | 45.0% | |
| AAGGTAATCCGTGAGCTCAG+TGG | - | chr5.1:80277153-80277172 | MS.gene021005:intron | 50.0% | |
| ATTGGTGGAGACTGCTAAGG+AGG | - | chr5.1:80278163-80278182 | MS.gene021005:intron | 50.0% | |
| CAGTGTGGATCCACCATGAA+AGG | + | chr5.1:80277688-80277707 | None:intergenic | 50.0% | |
| GAATCACTCCACTGAGCTCA+CGG | + | chr5.1:80277164-80277183 | None:intergenic | 50.0% | |
| TCTAATTGCTGGCGAGCTTC+AGG | - | chr5.1:80278010-80278029 | MS.gene021005:intron | 50.0% | |
| !! | TGCTCGGTTGATAGCTGCAC+AGG | - | chr5.1:80278052-80278071 | MS.gene021005:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 80276007 | 80278229 | 80276007 | ID=MS.gene021005 |
| chr5.1 | mRNA | 80276007 | 80278229 | 80276007 | ID=MS.gene021005.t1;Parent=MS.gene021005 |
| chr5.1 | exon | 80278227 | 80278229 | 80278227 | ID=MS.gene021005.t1.exon1;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80278227 | 80278229 | 80278227 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| chr5.1 | exon | 80277242 | 80277328 | 80277242 | ID=MS.gene021005.t1.exon2;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80277242 | 80277328 | 80277242 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| chr5.1 | exon | 80276989 | 80277080 | 80276989 | ID=MS.gene021005.t1.exon3;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80276989 | 80277080 | 80276989 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| chr5.1 | exon | 80276780 | 80276888 | 80276780 | ID=MS.gene021005.t1.exon4;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80276780 | 80276888 | 80276780 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| chr5.1 | exon | 80276631 | 80276666 | 80276631 | ID=MS.gene021005.t1.exon5;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80276631 | 80276666 | 80276631 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| chr5.1 | exon | 80276163 | 80276249 | 80276163 | ID=MS.gene021005.t1.exon6;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80276163 | 80276249 | 80276163 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| chr5.1 | exon | 80276007 | 80276078 | 80276007 | ID=MS.gene021005.t1.exon7;Parent=MS.gene021005.t1 |
| chr5.1 | CDS | 80276007 | 80276078 | 80276007 | ID=cds.MS.gene021005.t1;Parent=MS.gene021005.t1 |
| Gene Sequence |
| Protein sequence |
