Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75781.t1 | XP_003618095.1 | 99.4 | 156 | 1 | 0 | 37 | 192 | 6 | 161 | 4.00E-79 | 304.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75781.t1 | Q8LEZ8 | 91.7 | 156 | 13 | 0 | 37 | 192 | 6 | 161 | 6.5e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75781.t1 | G7KFD7 | 99.4 | 156 | 1 | 0 | 37 | 192 | 6 | 161 | 2.9e-79 | 304.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene75781 | 0.823969 | 1.04E-53 | -1.69E-46 |
| MS.gene049178 | MS.gene75781 | 0.823475 | 1.36E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene75781 | 0.832172 | 1.10E-55 | -1.69E-46 |
| MS.gene049756 | MS.gene75781 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene75781 | 0.820481 | 6.71E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene75781 | 0.800047 | 1.73E-48 | -1.69E-46 |
| MS.gene050001 | MS.gene75781 | 0.819109 | 1.38E-52 | -1.69E-46 |
| MS.gene050114 | MS.gene75781 | 0.833475 | 5.22E-56 | -1.69E-46 |
| MS.gene050253 | MS.gene75781 | 0.800799 | 1.22E-48 | -1.69E-46 |
| MS.gene050288 | MS.gene75781 | 0.823333 | 1.47E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene75781 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene050439 | MS.gene75781 | 0.8515 | 8.52E-61 | -1.69E-46 |
| MS.gene050752 | MS.gene75781 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene050780 | MS.gene75781 | 0.814349 | 1.61E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene75781 | 0.821987 | 3.01E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene75781 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene051063 | MS.gene75781 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene051120 | MS.gene75781 | 0.815512 | 8.90E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene75781 | 0.832169 | 1.10E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene75781 | 0.848816 | 4.82E-60 | -1.69E-46 |
| MS.gene051700 | MS.gene75781 | 0.815534 | 8.80E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene75781 | 0.81401 | 1.92E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene75781 | 0.805506 | 1.29E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene75781 | 0.820941 | 5.26E-53 | -1.69E-46 |
| MS.gene051756 | MS.gene75781 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene75781 | 0.838439 | 2.87E-57 | -1.69E-46 |
| MS.gene05188 | MS.gene75781 | 0.814858 | 1.24E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene75781 | 0.826625 | 2.45E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene75781 | 0.87984 | 8.97E-70 | -1.69E-46 |
| MS.gene052072 | MS.gene75781 | 0.802363 | 5.81E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene75781 | 0.817989 | 2.48E-52 | -1.69E-46 |
| MS.gene052889 | MS.gene75781 | 0.80126 | 9.79E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene75781 | 0.811762 | 5.95E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene75781 | 0.80611 | 9.65E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene75781 | 0.80048 | 1.41E-48 | -1.69E-46 |
| MS.gene053952 | MS.gene75781 | 0.825314 | 5.02E-54 | -1.69E-46 |
| MS.gene054222 | MS.gene75781 | 0.804968 | 1.67E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene75781 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene75781 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene75781 | 0.830495 | 2.84E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene75781 | 0.832743 | 7.94E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene75781 | 0.8511 | 1.11E-60 | -1.69E-46 |
| MS.gene055314 | MS.gene75781 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene75781 | 0.82402 | 1.01E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene75781 | 0.871505 | 6.49E-67 | -1.69E-46 |
| MS.gene056181 | MS.gene75781 | 0.802308 | 5.97E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene75781 | 0.825637 | 4.21E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene75781 | 0.811506 | 6.77E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene75781 | 0.815533 | 8.80E-52 | -1.69E-46 |
| MS.gene056638 | MS.gene75781 | 0.82828 | 9.81E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene75781 | 0.842256 | 2.89E-58 | -1.69E-46 |
| MS.gene056787 | MS.gene75781 | 0.833305 | 5.76E-56 | -1.69E-46 |
| MS.gene056896 | MS.gene75781 | 0.807422 | 5.10E-50 | -1.69E-46 |
| MS.gene056901 | MS.gene75781 | 0.809643 | 1.71E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene75781 | 0.884621 | 1.64E-71 | -1.69E-46 |
| MS.gene057094 | MS.gene75781 | 0.845321 | 4.37E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene75781 | 0.860035 | 2.73E-63 | -1.69E-46 |
| MS.gene057360 | MS.gene75781 | 0.846423 | 2.19E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene75781 | 0.826575 | 2.52E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene75781 | 0.826675 | 2.38E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene75781 | 0.813357 | 2.67E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene75781 | 0.826764 | 2.27E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene75781 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene75781 | 0.826433 | 2.72E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene75781 | 0.84238 | 2.68E-58 | -1.69E-46 |
| MS.gene059774 | MS.gene75781 | 0.870755 | 1.15E-66 | -1.69E-46 |
| MS.gene059830 | MS.gene75781 | 0.80722 | 5.62E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene75781 | -0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene75781 | 0.815129 | 1.08E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene75781 | 0.834633 | 2.68E-56 | -1.69E-46 |
| MS.gene06011 | MS.gene75781 | 0.855904 | 4.61E-62 | -1.69E-46 |
| MS.gene060365 | MS.gene75781 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene75781 | 0.823103 | 1.66E-53 | -1.69E-46 |
| MS.gene060697 | MS.gene75781 | 0.870538 | 1.35E-66 | -1.69E-46 |
| MS.gene060763 | MS.gene75781 | 0.804197 | 2.42E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene75781 | 0.800059 | 1.72E-48 | -1.69E-46 |
| MS.gene061188 | MS.gene75781 | 0.80047 | 1.42E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75781.t1 | MTR_5g098940 | 99.375 | 160 | 1 | 0 | 33 | 192 | 2 | 161 | 3.17e-116 | 327 |
| MS.gene75781.t1 | MTR_5g087820 | 82.500 | 160 | 28 | 0 | 33 | 192 | 26 | 185 | 4.00e-99 | 285 |
| MS.gene75781.t1 | MTR_1g025190 | 54.286 | 140 | 64 | 0 | 33 | 172 | 2 | 141 | 1.25e-51 | 162 |
| MS.gene75781.t1 | MTR_7g100010 | 43.478 | 138 | 78 | 0 | 33 | 170 | 3 | 140 | 3.40e-39 | 131 |
| MS.gene75781.t1 | MTR_8g102180 | 43.478 | 138 | 78 | 0 | 33 | 170 | 3 | 140 | 3.40e-39 | 131 |
| MS.gene75781.t1 | MTR_8g077600 | 36.810 | 163 | 93 | 2 | 33 | 190 | 2 | 159 | 1.43e-30 | 110 |
| MS.gene75781.t1 | MTR_8g077600 | 34.884 | 86 | 51 | 1 | 36 | 116 | 5 | 90 | 5.34e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75781.t1 | AT2G17380 | 91.875 | 160 | 13 | 0 | 33 | 192 | 2 | 161 | 3.06e-110 | 312 |
| MS.gene75781.t1 | AT4G35410 | 90.625 | 160 | 15 | 0 | 33 | 192 | 2 | 161 | 7.07e-108 | 306 |
| MS.gene75781.t1 | AT4G35410 | 91.753 | 97 | 8 | 0 | 33 | 129 | 2 | 98 | 2.81e-64 | 194 |
| MS.gene75781.t1 | AT1G47830 | 52.857 | 140 | 66 | 0 | 33 | 172 | 2 | 141 | 1.30e-50 | 160 |
| MS.gene75781.t1 | AT2G19790 | 42.446 | 139 | 80 | 0 | 33 | 171 | 3 | 141 | 1.92e-38 | 129 |
| MS.gene75781.t1 | AT3G50860 | 36.943 | 157 | 88 | 2 | 33 | 184 | 2 | 152 | 2.08e-29 | 107 |
| MS.gene75781.t1 | AT3G50860 | 37.410 | 139 | 82 | 1 | 33 | 166 | 2 | 140 | 2.74e-29 | 106 |
Find 30 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATAAAGTTGTTTATAAA+AGG | 0.214674 | 5.3:-79777147 | MS.gene75781:intron |
| GAGATTCTTGATCGGTATTT+TGG | 0.252220 | 5.3:-79776943 | MS.gene75781:CDS |
| AATTTCATCAAGTATATAAT+AGG | 0.297509 | 5.3:+79776385 | None:intergenic |
| TCTAATTGCTGGCGAGCTTC+AGG | 0.306112 | 5.3:-79776363 | MS.gene75781:CDS |
| CATTGTCTTTCAGGATTCAT+TGG | 0.310542 | 5.3:-79776228 | MS.gene75781:intron |
| ATCGCACAAGCTACTAAATA+AGG | 0.320939 | 5.3:-79776164 | None:intergenic |
| CTTCTTTCCTTCTGAGTGTA+AGG | 0.334840 | 5.3:+79777405 | None:intergenic |
| CTTGATGAAATTCTAATTGC+TGG | 0.336106 | 5.3:-79776374 | MS.gene75781:CDS |
| CAATTTGCAGGTCTGTGAAT+TGG | 0.375542 | 5.3:-79776813 | MS.gene75781:intron |
| CTCTACAAAATTACAGAGCT+TGG | 0.403422 | 5.3:+79777177 | None:intergenic |
| GGAAGGTTAGGCTCACAAAA+TGG | 0.441892 | 5.3:-79777434 | MS.gene75781:CDS |
| TGATGATGCTGACAACGAAT+TGG | 0.451575 | 5.3:-79776995 | MS.gene75781:CDS |
| CTTGATATTCAACTTCCATA+AGG | 0.468058 | 5.3:-79776789 | MS.gene75781:intron |
| GATAATATTACTCAAGGAAC+TGG | 0.478446 | 5.3:+79776184 | None:intergenic |
| TTAGTCGTCAAGGGAAGGTT+AGG | 0.481414 | 5.3:-79777446 | MS.gene75781:CDS |
| CACTCAGAAGGAAAGAAGTA+AGG | 0.487202 | 5.3:-79777400 | MS.gene75781:intron |
| AAAAGAATGCTGTTTCATCA+TGG | 0.502606 | 5.3:+79777709 | None:intergenic |
| TCTACAAAATTACAGAGCTT+GGG | 0.509679 | 5.3:+79777178 | None:intergenic |
| GTGCTTCTCATTAGTCGTCA+AGG | 0.528040 | 5.3:-79777456 | MS.gene75781:CDS |
| TGCTCGGTTGATAGCTGCAC+AGG | 0.540072 | 5.3:-79776321 | MS.gene75781:intron |
| TGTCTTTCAGGATTCATTGG+TGG | 0.541167 | 5.3:-79776225 | MS.gene75781:intron |
| TGCTTCTCATTAGTCGTCAA+GGG | 0.558103 | 5.3:-79777455 | MS.gene75781:CDS |
| AATTACAGAGCTTGGGAGCA+CGG | 0.567062 | 5.3:+79777185 | None:intergenic |
| GAATCACTCCACTGAGCTCA+CGG | 0.569834 | 5.3:+79777212 | None:intergenic |
| TCTCATTAGTCGTCAAGGGA+AGG | 0.585870 | 5.3:-79777451 | MS.gene75781:CDS |
| TTGTGCGATAATATTACTCA+AGG | 0.602166 | 5.3:+79776178 | None:intergenic |
| ATTGGTGGAGACTGCTAAGG+AGG | 0.602252 | 5.3:-79776210 | MS.gene75781:CDS |
| GTATTCACCTTACACTCAGA+AGG | 0.607833 | 5.3:-79777412 | MS.gene75781:CDS |
| TTCATTGGTGGAGACTGCTA+AGG | 0.613718 | 5.3:-79776213 | MS.gene75781:CDS |
| AAGGTAATCCGTGAGCTCAG+TGG | 0.653418 | 5.3:-79777220 | MS.gene75781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCATCAAGTATATAAT+AGG | + | chr5.3:79777491-79777510 | None:intergenic | 15.0% |
| !! | ATATTATATCCTTAAGAAAA+GGG | + | chr5.3:79776995-79777014 | None:intergenic | 15.0% |
| !! | GAAATATATTACATTAAACT+TGG | + | chr5.3:79777303-79777322 | None:intergenic | 15.0% |
| !! | GATATAAAGTTGTTTATAAA+AGG | - | chr5.3:79776726-79776745 | MS.gene75781:intron | 15.0% |
| !! | TATATCCATAATTCAAAATA+AGG | - | chr5.3:79777129-79777148 | MS.gene75781:intron | 15.0% |
| !! | TATATTATATCCTTAAGAAA+AGG | + | chr5.3:79776996-79777015 | None:intergenic | 15.0% |
| !! | ATTATCTGTATGTATTAACA+TGG | - | chr5.3:79776541-79776560 | MS.gene75781:intron | 20.0% |
| !! | TATTTCCATAATTCAAAACA+AGG | - | chr5.3:79777317-79777336 | MS.gene75781:intron | 20.0% |
| !!! | ATCTCATATTTTTATTGACA+AGG | - | chr5.3:79776634-79776653 | MS.gene75781:intron | 20.0% |
| !!! | GAACTTTTAAATGAAATGAA+TGG | - | chr5.3:79776306-79776325 | MS.gene75781:intron | 20.0% |
| !!! | TTTTAAATGAAATGAATGGT+AGG | - | chr5.3:79776310-79776329 | MS.gene75781:intron | 20.0% |
| ! | AAGACAATGTCATACAAATT+TGG | + | chr5.3:79777634-79777653 | None:intergenic | 25.0% |
| ! | ACCATGAAAGGATTATTAAT+AGG | + | chr5.3:79777176-79777195 | None:intergenic | 25.0% |
| ! | AGATGTAAATACACATATCA+AGG | + | chr5.3:79776618-79776637 | None:intergenic | 25.0% |
| ! | ATCGCTTATTCTCTTTATTA+TGG | - | chr5.3:79776509-79776528 | MS.gene75781:intron | 25.0% |
| ! | ATTCCAAGTACAAAAATACA+AGG | + | chr5.3:79776234-79776253 | None:intergenic | 25.0% |
| ! | CATGATTAAAAACAAAGAAC+AGG | + | chr5.3:79777463-79777482 | None:intergenic | 25.0% |
| ! | GATATATATCGCATTAAACT+TGG | + | chr5.3:79777115-79777134 | None:intergenic | 25.0% |
| ! | GATTATTAATAGGAGTTACA+GGG | + | chr5.3:79777166-79777185 | None:intergenic | 25.0% |
| ! | TAATAAAGAGAATAAGCGAT+AGG | + | chr5.3:79776509-79776528 | None:intergenic | 25.0% |
| ! | TAGAAATCCTATTAACAACT+GGG | + | chr5.3:79776349-79776368 | None:intergenic | 25.0% |
| ! | TATTAATAATCCTTTCATGG+TGG | - | chr5.3:79777175-79777194 | MS.gene75781:CDS | 25.0% |
| ! | TCCTATTAATAATCCTTTCA+TGG | - | chr5.3:79777172-79777191 | MS.gene75781:CDS | 25.0% |
| ! | TTAGAAATCCTATTAACAAC+TGG | + | chr5.3:79776350-79776369 | None:intergenic | 25.0% |
| !! | TGAAATGATTCATCATTTTG+TGG | - | chr5.3:79776908-79776927 | MS.gene75781:intron | 25.0% |
| !!! | CTGTTCTTTGTTTTTAATCA+TGG | - | chr5.3:79777461-79777480 | MS.gene75781:CDS | 25.0% |
| !!! | TCTTTGTTTTTAATCATGGA+AGG | - | chr5.3:79777465-79777484 | MS.gene75781:CDS | 25.0% |
| ACTAGACCAATAATAATGAC+AGG | + | chr5.3:79777426-79777445 | None:intergenic | 30.0% | |
| ACTAGACTGAATATAAAGAC+AGG | + | chr5.3:79777238-79777257 | None:intergenic | 30.0% | |
| AGCAGATATTCATTATACCA+TGG | + | chr5.3:79776824-79776843 | None:intergenic | 30.0% | |
| CACAAAGTGTATCTACATTT+AGG | + | chr5.3:79776400-79776419 | None:intergenic | 30.0% | |
| CTTGATATTCAACTTCCATA+AGG | - | chr5.3:79777084-79777103 | MS.gene75781:intron | 30.0% | |
| CTTGATGAAATTCTAATTGC+TGG | - | chr5.3:79777499-79777518 | MS.gene75781:intron | 30.0% | |
| GAATATAAAGACAGGTGATA+TGG | + | chr5.3:79777230-79777249 | None:intergenic | 30.0% | |
| GATAATATTACTCAAGGAAC+TGG | + | chr5.3:79777692-79777711 | None:intergenic | 30.0% | |
| GGATTATTAATAGGAGTTAC+AGG | + | chr5.3:79777167-79777186 | None:intergenic | 30.0% | |
| TATTAACATGGTGATTGTGA+TGG | - | chr5.3:79776553-79776572 | MS.gene75781:intron | 30.0% | |
| TCTACAAAATTACAGAGCTT+GGG | + | chr5.3:79776698-79776717 | None:intergenic | 30.0% | |
| TTAAACTTGGACATACCTTA+TGG | + | chr5.3:79777102-79777121 | None:intergenic | 30.0% | |
| TTGTGCGATAATATTACTCA+AGG | + | chr5.3:79777698-79777717 | None:intergenic | 30.0% | |
| TTTGTATGACATTGTCTTTC+AGG | - | chr5.3:79777636-79777655 | MS.gene75781:CDS | 30.0% | |
| ! | AACAGCATTCTTTTGTGTTT+TGG | - | chr5.3:79776173-79776192 | MS.gene75781:CDS | 30.0% |
| ! | ACAGCATTCTTTTGTGTTTT+GGG | - | chr5.3:79776174-79776193 | MS.gene75781:CDS | 30.0% |
| ! | ATCAATGGTCTTTCTCTTTT+GGG | - | chr5.3:79777576-79777595 | MS.gene75781:intron | 30.0% |
| ! | ATTTTGTGGAGATTCTTGAT+CGG | - | chr5.3:79776922-79776941 | MS.gene75781:intron | 30.0% |
| ! | TATCAATGGTCTTTCTCTTT+TGG | - | chr5.3:79777575-79777594 | MS.gene75781:intron | 30.0% |
| ! | TGATTGAATTCTGAAAGTCT+AGG | - | chr5.3:79776284-79776303 | MS.gene75781:intron | 30.0% |
| !! | TCACCTTGTATTTTTGTACT+TGG | - | chr5.3:79776228-79776247 | MS.gene75781:intron | 30.0% |
| !!! | GTAGGCCTTATTTTGAATTA+TGG | + | chr5.3:79777137-79777156 | None:intergenic | 30.0% |
| AAACAAAGAACAGGTCAGAA+GGG | + | chr5.3:79777266-79777285 | None:intergenic | 35.0% | |
| AATAATAATGACAGGCGATG+TGG | + | chr5.3:79777418-79777437 | None:intergenic | 35.0% | |
| ACATCGCCTGTCATTATTAT+TGG | - | chr5.3:79777417-79777436 | MS.gene75781:CDS | 35.0% | |
| AGGATGTTTATCATGCAATG+TGG | + | chr5.3:79776598-79776617 | None:intergenic | 35.0% | |
| CATGATCACAAACAAAGAAC+AGG | + | chr5.3:79777275-79777294 | None:intergenic | 35.0% | |
| CATTGTCTTTCAGGATTCAT+TGG | - | chr5.3:79777645-79777664 | MS.gene75781:CDS | 35.0% | |
| CTCTACAAAATTACAGAGCT+TGG | + | chr5.3:79776699-79776718 | None:intergenic | 35.0% | |
| GCTTGATGTTTAATTGACCA+TGG | - | chr5.3:79776804-79776823 | MS.gene75781:CDS | 35.0% | |
| GTGTATCTACATTTAGGAAG+AGG | + | chr5.3:79776394-79776413 | None:intergenic | 35.0% | |
| GTGTCACACTAACTTGATAA+TGG | - | chr5.3:79777029-79777048 | MS.gene75781:intron | 35.0% | |
| ! | AGCTCTGTAATTTTGTAGAG+TGG | - | chr5.3:79776699-79776718 | MS.gene75781:intron | 35.0% |
| ! | CTGTTCTTTGTTTGTGATCA+TGG | - | chr5.3:79777273-79777292 | MS.gene75781:intron | 35.0% |
| ! | GAGATTCTTGATCGGTATTT+TGG | - | chr5.3:79776930-79776949 | MS.gene75781:intron | 35.0% |
| ! | TCTTTGTTTGTGATCATGGA+AGG | - | chr5.3:79777277-79777296 | MS.gene75781:intron | 35.0% |
| ! | TGTAATTTTGTAGAGTGGAG+AGG | - | chr5.3:79776704-79776723 | MS.gene75781:intron | 35.0% |
| ! | TTGAAGAGTCCCTTTTCTTA+AGG | - | chr5.3:79776983-79777002 | MS.gene75781:CDS | 35.0% |
| !! | CAGCTTTATAGTCTTTTGCA+AGG | - | chr5.3:79776767-79776786 | MS.gene75781:intron | 35.0% |
| !!! | GTAGGCCTTGTTTTGAATTA+TGG | + | chr5.3:79777325-79777344 | None:intergenic | 35.0% |
| ATGGTCACTTGTCAATTTGC+AGG | - | chr5.3:79777048-79777067 | MS.gene75781:intron | 40.0% | |
| CAAACAAAGAACAGGTCAGA+AGG | + | chr5.3:79777267-79777286 | None:intergenic | 40.0% | |
| CAATTTGCAGGTCTGTGAAT+TGG | - | chr5.3:79777060-79777079 | MS.gene75781:intron | 40.0% | |
| CACTCAGAAGGAAAGAAGTA+AGG | - | chr5.3:79776473-79776492 | MS.gene75781:intron | 40.0% | |
| CGAGCAAAAAAACTGTTGCT+CGG | - | chr5.3:79777536-79777555 | MS.gene75781:intron | 40.0% | |
| CTTCTTTCCTTCTGAGTGTA+AGG | + | chr5.3:79776471-79776490 | None:intergenic | 40.0% | |
| GGAGTTACAGGGAAATAAGT+AGG | + | chr5.3:79777155-79777174 | None:intergenic | 40.0% | |
| GGAGTTACAGGGAATTAAGT+AGG | + | chr5.3:79777343-79777362 | None:intergenic | 40.0% | |
| GGTGATATGGTCAACAATCA+AGG | + | chr5.3:79777217-79777236 | None:intergenic | 40.0% | |
| GTATTCACCTTACACTCAGA+AGG | - | chr5.3:79776461-79776480 | MS.gene75781:intron | 40.0% | |
| TAATTGAGGCTCATTCAGTG+TGG | + | chr5.3:79777391-79777410 | None:intergenic | 40.0% | |
| TGCTTCTCATTAGTCGTCAA+GGG | - | chr5.3:79776418-79776437 | MS.gene75781:intron | 40.0% | |
| TGTCTTTCAGGATTCATTGG+TGG | - | chr5.3:79777648-79777667 | MS.gene75781:CDS | 40.0% | |
| TTGCAAGGCAATCTTCTGTT+TGG | - | chr5.3:79776782-79776801 | MS.gene75781:intron | 40.0% | |
| ! | TGATGATGCTGACAACGAAT+TGG | - | chr5.3:79776878-79776897 | MS.gene75781:intron | 40.0% |
| AATTACAGAGCTTGGGAGCA+CGG | + | chr5.3:79776691-79776710 | None:intergenic | 45.0% | |
| CAATCAAGGCTCATTCAGTG+TGG | + | chr5.3:79777203-79777222 | None:intergenic | 45.0% | |
| CCTATTAACAACTGGGAGAG+AGG | + | chr5.3:79776342-79776361 | None:intergenic | 45.0% | |
| CCTCTCTCCCAGTTGTTAAT+AGG | - | chr5.3:79776339-79776358 | MS.gene75781:CDS | 45.0% | |
| GATAGCTGCACAGGTATCAA+TGG | - | chr5.3:79777561-79777580 | MS.gene75781:intron | 45.0% | |
| GGAAGGTTAGGCTCACAAAA+TGG | - | chr5.3:79776439-79776458 | MS.gene75781:intron | 45.0% | |
| GGCGATGTGGTCAATAATTG+AGG | + | chr5.3:79777405-79777424 | None:intergenic | 45.0% | |
| GTGCTTCTCATTAGTCGTCA+AGG | - | chr5.3:79776417-79776436 | MS.gene75781:intron | 45.0% | |
| TCTCATTAGTCGTCAAGGGA+AGG | - | chr5.3:79776422-79776441 | MS.gene75781:intron | 45.0% | |
| TTAGTCGTCAAGGGAAGGTT+AGG | - | chr5.3:79776427-79776446 | MS.gene75781:intron | 45.0% | |
| TTCATTGGTGGAGACTGCTA+AGG | - | chr5.3:79777660-79777679 | MS.gene75781:CDS | 45.0% | |
| AAGGTAATCCGTGAGCTCAG+TGG | - | chr5.3:79776653-79776672 | MS.gene75781:intron | 50.0% | |
| ATTGGTGGAGACTGCTAAGG+AGG | - | chr5.3:79777663-79777682 | MS.gene75781:CDS | 50.0% | |
| CAGTGTGGATCCACCATGAA+AGG | + | chr5.3:79777188-79777207 | None:intergenic | 50.0% | |
| GAATCACTCCACTGAGCTCA+CGG | + | chr5.3:79776664-79776683 | None:intergenic | 50.0% | |
| TCTAATTGCTGGCGAGCTTC+AGG | - | chr5.3:79777510-79777529 | MS.gene75781:intron | 50.0% | |
| !! | TGCTCGGTTGATAGCTGCAC+AGG | - | chr5.3:79777552-79777571 | MS.gene75781:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 79776166 | 79777729 | 79776166 | ID=MS.gene75781 |
| chr5.3 | mRNA | 79776166 | 79777729 | 79776166 | ID=MS.gene75781.t1;Parent=MS.gene75781 |
| chr5.3 | exon | 79777634 | 79777729 | 79777634 | ID=MS.gene75781.t1.exon1;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79777634 | 79777729 | 79777634 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| chr5.3 | exon | 79777401 | 79777487 | 79777401 | ID=MS.gene75781.t1.exon2;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79777401 | 79777487 | 79777401 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| chr5.3 | exon | 79777148 | 79777239 | 79777148 | ID=MS.gene75781.t1.exon3;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79777148 | 79777239 | 79777148 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| chr5.3 | exon | 79776939 | 79777047 | 79776939 | ID=MS.gene75781.t1.exon4;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79776939 | 79777047 | 79776939 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| chr5.3 | exon | 79776790 | 79776825 | 79776790 | ID=MS.gene75781.t1.exon5;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79776790 | 79776825 | 79776790 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| chr5.3 | exon | 79776322 | 79776408 | 79776322 | ID=MS.gene75781.t1.exon6;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79776322 | 79776408 | 79776322 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| chr5.3 | exon | 79776166 | 79776237 | 79776166 | ID=MS.gene75781.t1.exon7;Parent=MS.gene75781.t1 |
| chr5.3 | CDS | 79776166 | 79776237 | 79776166 | ID=cds.MS.gene75781.t1;Parent=MS.gene75781.t1 |
| Gene Sequence |
| Protein sequence |
