AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45112

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45112.t1 MTR_1g064430 97.507 682 13 2 1 680 5 684 0.0 1380
MS.gene45112.t1 MTR_1g064430 97.474 673 13 2 10 680 1 671 0.0 1359
MS.gene45112.t1 MTR_2g094570 55.983 702 261 14 1 680 31 706 0.0 731
MS.gene45112.t1 MTR_2g094570 57.652 673 238 13 29 680 4 650 0.0 729
MS.gene45112.t1 MTR_2g094570 57.652 673 238 13 29 680 4 650 0.0 728
MS.gene45112.t1 MTR_4g058930 58.902 674 218 13 33 680 9 649 0.0 715
MS.gene45112.t1 MTR_4g058930 58.902 674 218 13 33 680 9 649 0.0 715
MS.gene45112.t1 MTR_7g101280 54.892 603 239 11 29 618 24 606 0.0 623
MS.gene45112.t1 MTR_0041s0110 54.892 603 239 11 29 618 24 606 0.0 623
MS.gene45112.t1 MTR_1g094960 50.000 644 241 12 10 611 1 605 0.0 566
MS.gene45112.t1 MTR_7g101275 50.000 408 145 5 45 441 1 360 1.21e-124 376
MS.gene45112.t1 MTR_0041s0120 50.000 408 157 7 45 441 1 372 1.25e-121 369
MS.gene45112.t1 MTR_3g073420 41.397 587 289 16 33 593 16 573 1.08e-117 365
MS.gene45112.t1 MTR_5g061220 42.765 463 212 14 31 479 14 437 2.51e-103 325
MS.gene45112.t1 MTR_2g024430 41.422 408 163 11 33 429 17 359 8.00e-89 287
MS.gene45112.t1 MTR_5g040880 38.821 407 185 7 30 431 5 352 1.11e-86 281
MS.gene45112.t1 MTR_5g082140 37.882 425 194 10 33 448 9 372 7.42e-80 261
MS.gene45112.t1 MTR_1g058210 36.190 420 203 10 31 442 7 369 1.98e-79 260
MS.gene45112.t1 MTR_4g021580 30.073 685 389 18 20 680 3 621 7.26e-79 263
MS.gene45112.t1 MTR_4g021580 30.073 685 389 18 20 680 3 621 2.25e-78 263
MS.gene45112.t1 MTR_2g014770 36.446 439 214 11 32 459 51 435 3.28e-77 259
MS.gene45112.t1 MTR_2g093740 38.221 416 198 10 36 437 56 426 3.49e-77 261
MS.gene45112.t1 MTR_4g060460 30.028 716 386 21 36 680 54 725 7.87e-77 262
MS.gene45112.t1 MTR_2g093740 38.221 416 198 10 36 437 56 426 1.83e-76 260
MS.gene45112.t1 MTR_2g014770 36.446 439 214 11 32 459 51 435 2.06e-76 258
MS.gene45112.t1 MTR_2g093740 38.221 416 198 10 36 437 56 426 2.27e-76 261
MS.gene45112.t1 MTR_8g100050 35.492 417 219 6 15 426 38 409 1.16e-75 258
MS.gene45112.t1 MTR_8g100050 35.492 417 219 6 15 426 38 409 7.84e-75 257
MS.gene45112.t1 MTR_1g024025 37.209 387 190 6 29 408 36 376 1.75e-74 261
MS.gene45112.t1 MTR_2g005240 31.587 668 358 19 36 680 23 614 3.78e-74 252
MS.gene45112.t1 MTR_2g093740 37.063 429 198 11 36 437 56 439 2.72e-73 251
MS.gene45112.t1 MTR_2g093740 37.063 429 198 11 36 437 56 439 5.36e-73 251
MS.gene45112.t1 MTR_2g093740 37.063 429 198 11 36 437 56 439 1.14e-72 251
MS.gene45112.t1 MTR_4g060460 36.867 415 204 8 36 434 54 426 7.69e-72 248
MS.gene45112.t1 MTR_4g088210 35.455 440 222 10 32 457 36 427 1.01e-71 246
MS.gene45112.t1 MTR_5g040740 37.867 375 165 7 33 398 9 324 1.28e-71 238
MS.gene45112.t1 MTR_4g088210 35.455 440 222 10 32 457 36 427 1.39e-71 246
MS.gene45112.t1 MTR_2g006270 34.414 401 194 11 35 426 12 352 2.54e-71 239
MS.gene45112.t1 MTR_5g076270 35.038 391 204 7 30 414 18 364 3.62e-70 244
MS.gene45112.t1 MTR_8g079492 36.000 400 206 8 27 421 14 368 1.05e-69 244
MS.gene45112.t1 MTR_8g079492 36.000 400 206 8 27 421 14 368 1.09e-69 244
MS.gene45112.t1 MTR_4g124900 37.530 413 208 7 14 421 1 368 1.13e-69 246
MS.gene45112.t1 MTR_4g124900 37.530 413 208 7 14 421 1 368 1.52e-69 246
MS.gene45112.t1 MTR_2g018690 36.409 401 204 9 27 421 14 369 2.06e-68 241
MS.gene45112.t1 MTR_8g101360 38.342 386 186 6 33 411 28 368 4.23e-68 242
MS.gene45112.t1 MTR_3g064050 34.271 391 207 8 30 414 20 366 2.33e-65 231
MS.gene45112.t1 MTR_2g006380 33.251 403 193 12 33 426 17 352 1.56e-64 221
MS.gene45112.t1 MTR_8g027440 37.221 403 192 10 36 429 29 379 2.99e-64 225
MS.gene45112.t1 MTR_7g062540 34.529 446 220 14 24 460 4 386 1.28e-63 224
MS.gene45112.t1 MTR_2g093740 40.461 304 134 5 136 437 38 296 4.10e-59 210
MS.gene45112.t1 MTR_2g093740 40.461 304 134 5 136 437 38 296 6.97e-59 211
MS.gene45112.t1 MTR_2g043250 47.059 221 110 2 24 239 11 229 6.43e-58 212
MS.gene45112.t1 MTR_2g043250 40.777 103 60 1 309 411 257 358 8.62e-17 85.5
MS.gene45112.t1 MTR_5g060780 35.749 414 194 15 33 434 9 362 6.59e-57 198
MS.gene45112.t1 MTR_5g061890 34.821 448 209 18 33 457 9 396 1.59e-56 197
MS.gene45112.t1 MTR_5g460920 35.507 414 195 15 33 434 9 362 7.19e-56 196
MS.gene45112.t1 MTR_2g093740 38.801 317 134 6 136 437 38 309 1.89e-55 200
MS.gene45112.t1 MTR_2g093740 38.801 317 134 6 136 437 38 309 2.74e-55 201
MS.gene45112.t1 MTR_8g079492 35.866 329 166 7 93 421 3 286 4.36e-52 193
MS.gene45112.t1 MTR_5g060630 29.735 528 248 18 31 489 7 480 9.28e-50 182
MS.gene45112.t1 MTR_5g460740 29.735 528 248 18 31 489 7 480 9.28e-50 182
MS.gene45112.t1 MTR_5g062970 41.667 192 106 4 36 224 38 226 1.08e-46 166
MS.gene45112.t1 MTR_8g446900 29.630 378 197 11 82 457 12 322 9.91e-44 162
MS.gene45112.t1 MTR_5g062960 35.955 178 88 6 302 476 1 155 6.63e-23 97.4
MS.gene45112.t1 MTR_3g064050 39.216 102 60 2 314 414 29 129 3.15e-15 79.7
MS.gene45112.t1 MTR_5g060770 32.895 152 87 5 81 230 6 144 8.20e-15 77.0
MS.gene45112.t1 MTR_5g060770 32.990 194 100 8 300 483 142 315 9.66e-15 76.6
MS.gene45112.t1 MTR_5g032260 38.095 105 63 2 302 405 49 152 1.87e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45112.t1 AT4G30080 55.255 666 254 13 29 680 12 647 0.0 676
MS.gene45112.t1 AT2G28350 53.148 683 250 18 28 680 2 644 0.0 635
MS.gene45112.t1 AT2G28350 53.148 683 250 18 28 680 2 644 0.0 634
MS.gene45112.t1 AT1G77850 42.358 458 233 11 31 478 14 450 1.35e-113 354
MS.gene45112.t1 AT1G77850 42.576 458 232 12 31 478 14 450 1.56e-113 353
MS.gene45112.t1 AT1G59750 31.571 662 357 16 36 680 22 604 7.23e-78 262
MS.gene45112.t1 AT1G59750 31.763 658 366 14 36 680 22 609 1.73e-77 261
MS.gene45112.t1 AT1G59750 31.763 658 366 14 36 680 22 609 1.73e-77 261
MS.gene45112.t1 AT1G59750 31.611 658 364 15 36 680 22 606 8.12e-77 259
MS.gene45112.t1 AT1G19850 37.859 383 186 6 33 408 51 388 6.86e-76 261
MS.gene45112.t1 AT1G19850 37.859 383 186 6 33 408 40 377 6.99e-76 261
MS.gene45112.t1 AT2G33860 35.792 461 233 11 32 477 52 464 3.32e-75 253
MS.gene45112.t1 AT5G60450 37.838 407 189 11 36 426 41 399 1.65e-74 255
MS.gene45112.t1 AT5G60450 37.838 407 189 11 36 426 65 423 4.09e-74 254
MS.gene45112.t1 AT5G37020 36.041 394 200 6 28 414 14 362 4.00e-73 251
MS.gene45112.t1 AT5G37020 36.041 394 200 6 28 414 14 362 1.40e-72 251
MS.gene45112.t1 AT4G23980 30.075 665 358 18 36 680 12 589 3.41e-72 246
MS.gene45112.t1 AT5G62000 34.346 428 223 7 11 426 30 411 1.03e-71 249
MS.gene45112.t1 AT5G62000 34.346 428 223 7 11 426 30 411 1.03e-71 249
MS.gene45112.t1 AT5G62000 34.346 428 223 7 11 426 30 411 1.03e-71 249
MS.gene45112.t1 AT5G62000 34.346 428 223 7 11 426 30 411 1.03e-71 249
MS.gene45112.t1 AT2G46530 29.812 691 327 22 11 680 3 556 1.31e-71 244
MS.gene45112.t1 AT5G62000 34.346 428 223 7 11 426 30 411 1.41e-71 249
MS.gene45112.t1 AT2G46530 30.180 666 314 21 36 680 42 577 8.38e-71 242
MS.gene45112.t1 AT3G61830 35.147 441 224 12 18 451 7 392 1.47e-70 241
MS.gene45112.t1 AT4G23980 29.774 665 358 18 36 680 12 587 2.78e-70 241
MS.gene45112.t1 AT1G30330 35.910 401 206 9 27 421 14 369 8.30e-69 242
MS.gene45112.t1 AT1G30330 35.930 398 204 9 30 421 19 371 9.92e-69 242
MS.gene45112.t1 AT1G30330 35.930 398 204 9 30 421 19 371 9.92e-69 242
MS.gene45112.t1 AT5G20730 36.609 407 208 6 24 425 12 373 1.29e-66 238
MS.gene45112.t1 AT1G19220 36.855 407 207 6 24 425 11 372 1.35e-66 238
MS.gene45112.t1 AT5G20730 36.520 408 208 7 24 425 12 374 2.52e-65 234
MS.gene45112.t1 AT5G20730 36.520 408 208 7 24 425 12 374 2.87e-65 234
MS.gene45112.t1 AT1G35520 29.874 636 317 20 36 655 27 549 1.85e-60 213
MS.gene45112.t1 AT1G34410 28.463 657 352 19 36 680 27 577 9.21e-60 211
MS.gene45112.t1 AT3G61830 35.925 373 183 10 80 451 24 341 1.62e-57 204
MS.gene45112.t1 AT1G34390 29.048 630 328 21 36 655 27 547 2.18e-57 205
MS.gene45112.t1 AT1G34310 34.988 403 196 11 36 429 27 372 2.23e-57 205
MS.gene45112.t1 AT1G35240 34.048 420 210 11 36 446 27 388 2.84e-57 204
MS.gene45112.t1 AT1G35540 34.336 399 199 10 36 426 27 370 6.73e-57 204
MS.gene45112.t1 AT2G33860 36.467 351 169 8 136 477 2 307 5.80e-56 197
MS.gene45112.t1 AT1G34170 32.587 402 204 11 36 427 25 369 1.99e-53 192
MS.gene45112.t1 AT2G46530 29.570 558 257 18 135 680 36 469 1.02e-51 187
MS.gene45112.t1 AT5G37020 36.429 280 134 4 136 414 31 267 1.93e-48 182
MS.gene45112.t1 AT1G34170 31.095 402 184 11 36 427 25 343 4.50e-47 174
MS.gene45112.t1 AT1G34170 31.095 402 184 11 36 427 25 343 2.72e-46 173
MS.gene45112.t1 AT1G43950 41.346 208 102 7 36 235 27 222 4.00e-38 141
MS.gene45112.t1 AT2G46870 34.862 109 64 2 125 233 24 125 2.92e-11 65.5
MS.gene45112.t1 AT3G25730 36.458 96 59 1 136 229 183 278 6.17e-11 65.1
MS.gene45112.t1 AT3G61970 27.670 206 120 7 128 312 4 201 6.75e-11 64.3

Find 181 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGATGAATATATTTA+TGG 0.118268 1.2:+49318366 MS.gene45112:CDS
GTCTCGAATAAGTTGGTTTA+TGG 0.152750 1.2:+49319416 MS.gene45112:CDS
AGATGGAAATACCAATAAAA+TGG 0.189014 1.2:+49320358 MS.gene45112:CDS
GCATAAACCTCATCTGTTTC+AGG 0.203134 1.2:-49318628 None:intergenic
CCCTCCTCTTCAGAACATTT+TGG 0.208126 1.2:+49318855 MS.gene45112:CDS
TGAGAAAGGTGAAAGGTTTA+TGG 0.219953 1.2:-49319898 None:intergenic
CGAAGAAACGGAAGCAAGTT+TGG 0.233645 1.2:+49320475 MS.gene45112:CDS
TAAGCTTAAGCTTGTTCCTT+TGG 0.291537 1.2:+49318651 MS.gene45112:CDS
TGGTTTATGGGAATTGTATC+TGG 0.292586 1.2:+49319429 MS.gene45112:CDS
GAAACGATGGCACTGAAATT+TGG 0.305036 1.2:-49319974 None:intergenic
GGACAATTCATGAAGTTAAC+AGG 0.315804 1.2:-49318550 None:intergenic
TCGTTTCCTAGTAACCTTCT+AGG 0.317283 1.2:+49319990 MS.gene45112:CDS
AGTTCAGGCAGGTCTATTTC+CGG 0.319570 1.2:+49320118 MS.gene45112:CDS
TTCACCTTGGAGGCTTCTTC+AGG 0.328238 1.2:+49319485 MS.gene45112:CDS
AAGCTTAAGCTTGTTCCTTT+GGG 0.328422 1.2:+49318652 MS.gene45112:CDS
AGAAGCCTCCAAGGTGAATT+AGG 0.335922 1.2:-49319480 None:intergenic
CTTGTTCCTTTGGGTGGAAA+TGG 0.343258 1.2:+49318661 MS.gene45112:CDS
ATGCAGATTCGATGGTGTTC+TGG 0.343933 1.2:+49319357 MS.gene45112:CDS
ACAATTGACCTTTCTTTACT+TGG 0.344982 1.2:+49320548 MS.gene45112:CDS
GACAATCTCAATTTCTTCCT+TGG 0.347743 1.2:-49319924 None:intergenic
ACCGCTTGAAGGACCGCTTC+TGG 0.350997 1.2:-49319237 None:intergenic
TCTCGAATAAGTTGGTTTAT+GGG 0.357035 1.2:+49319417 MS.gene45112:CDS
AATGTCTTTGCAAATGAAAC+AGG 0.359372 1.2:-49318742 None:intergenic
ATGGCGAGACGTGGAAGTTT+AGG 0.367612 1.2:+49318890 MS.gene45112:CDS
CATGCCAGCAGGAGTACTTT+CGG 0.368965 1.2:-49320039 None:intergenic
TCATTATGGTCTTCCGATAT+CGG 0.371359 1.2:+49320079 MS.gene45112:CDS
CATGAGGATCCATTACCATT+AGG 0.376847 1.2:+49319078 MS.gene45112:CDS
CTCTCACTAGAGGAGCGTTT+TGG 0.379568 1.2:-49320428 None:intergenic
CTGGCTCCCTGCATGCCAGC+AGG 0.380532 1.2:-49320050 None:intergenic
TTCTTCCTTGGTTGTGAGAA+AGG 0.380986 1.2:-49319912 None:intergenic
CGCGGTTATCCTTATACCAT+TGG 0.383301 1.2:-49320454 None:intergenic
TGAGAGTTTCCAATGGTATA+AGG 0.391430 1.2:+49320445 MS.gene45112:CDS
CCGCTAAAGTTACCGCTTGA+AGG 0.392870 1.2:-49319248 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.396598 1.2:+49320051 MS.gene45112:CDS
AACTTGCTTCCGTTTCTTCG+CGG 0.399377 1.2:-49320472 None:intergenic
AGTTTGTTGATCCCCTTCTC+TGG 0.400220 1.2:+49319457 MS.gene45112:CDS
AACTCAGGCGCGAATATGAC+TGG 0.403386 1.2:+49319198 MS.gene45112:CDS
AATCACAAGAAGCTTCTTGC+CGG 0.403468 1.2:+49318973 MS.gene45112:CDS
GGAGCCAGGCATGCTCATTA+TGG 0.423939 1.2:+49320065 MS.gene45112:CDS
TTTCGGGTAGACAACGGAAT+AGG 0.433921 1.2:-49320022 None:intergenic
TGGTATTTCCATCTGATGAA+TGG 0.434165 1.2:-49320349 None:intergenic
GGCTAATAAGCAACCGTTTG+AGG 0.435944 1.2:+49319269 MS.gene45112:CDS
CCAACAGGATTCCACCCTAA+TGG 0.436228 1.2:-49319093 None:intergenic
AGAAAGCTGGCAGACATGTT+TGG 0.443426 1.2:+49320590 MS.gene45112:CDS
GTGCTCTACCGTGATATATC+TGG 0.445579 1.2:+49320641 MS.gene45112:CDS
GGAATCAAAGGTGAAACCTT+TGG 0.447087 1.2:-49318571 None:intergenic
TACACAGAATGAGAATCAAA+TGG 0.448127 1.2:+49319140 MS.gene45112:CDS
ATGAGGATCCATTACCATTA+GGG 0.450034 1.2:+49319079 MS.gene45112:CDS
TCTGGCCTAATTCACCTTGG+AGG 0.451766 1.2:+49319475 MS.gene45112:CDS
TCTCCACCTCAGTAAAGTTC+AGG 0.453129 1.2:+49320103 MS.gene45112:CDS
ACACAGAATGAGAATCAAAT+GGG 0.454771 1.2:+49319141 MS.gene45112:CDS
TAAGGATAACCGCGAAGAAA+CGG 0.457301 1.2:+49320463 MS.gene45112:CDS
ATGATCAAAAGGCACGAAAC+CGG 0.458029 1.2:-49320141 None:intergenic
GTCATTAGAGATTTGTTGCT+CGG 0.460103 1.2:-49320327 None:intergenic
GTTTGTGATTCTTACCTGAA+TGG 0.461365 1.2:-49320689 None:intergenic
GATGGAAATACCAATAAAAT+GGG 0.463679 1.2:+49320359 MS.gene45112:CDS
CTGAGGTGGAGATCCGATAT+CGG 0.464440 1.2:-49320092 None:intergenic
ATGCCAGCAGGAGTACTTTC+GGG 0.465859 1.2:-49320038 None:intergenic
TGGGATTCGACGAGCGAAGA+AGG 0.469310 1.2:+49319041 MS.gene45112:CDS
CACTGAAATTTGGCCGTCGA+GGG 0.472008 1.2:-49319964 None:intergenic
ATAGGTTGCTCTGACCTAGA+AGG 0.479580 1.2:-49320004 None:intergenic
TGCATTGCCGCCTCTACTAA+AGG 0.482510 1.2:-49319339 None:intergenic
CAACTATGGCATGCTTGTGC+AGG 0.483052 1.2:+49318451 MS.gene45112:CDS
GGATTCCACCCTAATGGTAA+TGG 0.485472 1.2:-49319087 None:intergenic
ATCACAAGAAGCTTCTTGCC+GGG 0.486243 1.2:+49318974 MS.gene45112:CDS
AAGTACTCCTGCTGGCATGC+AGG 0.486614 1.2:+49320043 MS.gene45112:CDS
AAAATGGTGATCTTTGTGTT+GGG 0.488407 1.2:+49319022 MS.gene45112:CDS
TTAATAGATAAAACTTTGCA+TGG 0.488914 1.2:-49318592 None:intergenic
AGACGAATCCTCGGTTTCAA+AGG 0.490672 1.2:-49319397 None:intergenic
CGACGAGCGAAGAAGGGTAT+TGG 0.491306 1.2:+49319048 MS.gene45112:CDS
TTCTCTGGCCTAATTCACCT+TGG 0.492130 1.2:+49319472 MS.gene45112:CDS
CCTTTGGGTGGAAATGGTAA+TGG 0.496376 1.2:+49318667 MS.gene45112:CDS
AAAACTTTGCATGGAATCAA+AGG 0.504526 1.2:-49318583 None:intergenic
CTTAAGCTTGTTCCTTTGGG+TGG 0.509650 1.2:+49318655 MS.gene45112:CDS
ATTTACTGCAAAATGTAAGA+AGG 0.509927 1.2:+49319835 MS.gene45112:CDS
AGTTTAGCAGCATGATCAAA+AGG 0.510146 1.2:-49320152 None:intergenic
CTCTGACCTAGAAGGTTACT+AGG 0.513995 1.2:-49319996 None:intergenic
AAGTTTAGGCATATTTATAG+AGG 0.517507 1.2:+49318904 MS.gene45112:CDS
TGTCTCTTGCTTACTATCCA+TGG 0.518182 1.2:+49320226 MS.gene45112:CDS
CCATTAGGGTGGAATCCTGT+TGG 0.519653 1.2:+49319093 MS.gene45112:CDS
GGAAGCAAGTTTGGAGAGTA+CGG 0.521728 1.2:+49320484 MS.gene45112:CDS
TGACTGGGAGGGAAAAGGTT+AGG 0.521859 1.2:+49319214 MS.gene45112:CDS
TAAACTTTACTGTTCACTGT+TGG 0.522539 1.2:-49318490 None:intergenic
TGATGAACTGTACAGAAAGC+TGG 0.523736 1.2:+49320577 MS.gene45112:CDS
GGTGTTTAGATCCTCAACTA+TGG 0.524660 1.2:+49318437 MS.gene45112:CDS
GGGTAGTAAATAACCTCAAA+CGG 0.525195 1.2:-49319282 None:intergenic
CATAAGATCCAAGTAAAGAA+AGG 0.525657 1.2:-49320556 None:intergenic
ACGAGGAGTTCCCGAACCAT+CGG 0.527122 1.2:-49320390 None:intergenic
GCCAAAATGTTCTGAAGAGG+AGG 0.527805 1.2:-49318856 None:intergenic
TTCTGTGTAAACCAAGGAAG+AGG 0.532226 1.2:-49319126 None:intergenic
GAATATGACTGGGAGGGAAA+AGG 0.532595 1.2:+49319209 MS.gene45112:CDS
ATGTAAGAAGGGTGAGTCCA+TGG 0.533350 1.2:+49319847 MS.gene45112:CDS
AGGATTCGTCTCGAATAAGT+TGG 0.533362 1.2:+49319409 MS.gene45112:CDS
GAAAATGGTGATCTTTGTGT+TGG 0.533797 1.2:+49319021 MS.gene45112:CDS
ACATTGGAGAGGAACCATTC+AGG 0.535436 1.2:+49320675 MS.gene45112:CDS
TCTAATGACCATTCATCAGA+TGG 0.537635 1.2:+49320341 MS.gene45112:CDS
AGTACTCCTGCTGGCATGCA+GGG 0.540145 1.2:+49320044 MS.gene45112:CDS
AAGACCATAATGAGCATGCC+TGG 0.540953 1.2:-49320069 None:intergenic
GCATGCTTGTGCAGGTGGAA+TGG 0.542227 1.2:+49318459 MS.gene45112:CDS
CCTTCAAGCGGTAACTTTAG+CGG 0.549169 1.2:+49319248 MS.gene45112:CDS
GCGAAGAAGGGTATTGGTGG+TGG 0.550842 1.2:+49319054 MS.gene45112:CDS
GGGATTCGACGAGCGAAGAA+GGG 0.551807 1.2:+49319042 MS.gene45112:CDS
AAAGTTTATTACTTTCCTCA+AGG 0.553230 1.2:+49318505 MS.gene45112:CDS
CTATGGCATGCTTGTGCAGG+TGG 0.553241 1.2:+49318454 MS.gene45112:CDS
CTACCCGAAAGTACTCCTGC+TGG 0.554091 1.2:+49320035 MS.gene45112:CDS
TGTGAAGGCGCCTTTAGTAG+AGG 0.555008 1.2:+49319329 MS.gene45112:CDS
AAGGTGAATTAGGCCAGAGA+AGG 0.557096 1.2:-49319470 None:intergenic
TAACTTCATGAATTGTCCAA+AGG 0.561840 1.2:+49318555 MS.gene45112:CDS
AATAACAATGGTTTGAACTC+AGG 0.561882 1.2:+49319183 MS.gene45112:CDS
AACTCTGGCGTACTTGCGCG+AGG 0.565767 1.2:-49319303 None:intergenic
TTTACTGCAAAATGTAAGAA+GGG 0.567494 1.2:+49319836 MS.gene45112:CDS
TTAGCCAAAATGTTCTGAAG+AGG 0.569408 1.2:-49318859 None:intergenic
GCACTGAAATTTGGCCGTCG+AGG 0.570322 1.2:-49319965 None:intergenic
CCATTACCATTTCCACCCAA+AGG 0.573446 1.2:-49318667 None:intergenic
CAAGATGGCCTTTGAAACCG+AGG 0.577088 1.2:+49319389 MS.gene45112:CDS
CGAGCGAAGAAGGGTATTGG+TGG 0.577713 1.2:+49319051 MS.gene45112:CDS
GCTACTAATTCAACCAACCA+TGG 0.579195 1.2:-49319864 None:intergenic
ATTCATCAGAAGAAGTTGAA+AGG 0.580416 1.2:+49318416 MS.gene45112:CDS
AGGTGAATTAGGCCAGAGAA+GGG 0.583510 1.2:-49319469 None:intergenic
ATTAACAACAACAATAACAA+TGG 0.588569 1.2:+49319171 MS.gene45112:CDS
CACCTCAGTAAAGTTCAGGC+AGG 0.589149 1.2:+49320107 MS.gene45112:CDS
CTGCCTGAACTTTACTGAGG+TGG 0.589800 1.2:-49320106 None:intergenic
AAAGGTGAAAGGTTTATGGA+TGG 0.590026 1.2:-49319894 None:intergenic
CTGAAATTTGGCCGTCGAGG+GGG 0.590791 1.2:-49319962 None:intergenic
TCAAAAGGCACGAAACCGGC+CGG 0.591651 1.2:-49320137 None:intergenic
GGCGCCTTCACACAAAACTC+TGG 0.592521 1.2:-49319318 None:intergenic
CAGGCAGGTCTATTTCCGGC+CGG 0.592530 1.2:+49320122 MS.gene45112:CDS
GTAGTCAAAAGATGCCGCCT+CGG 0.596640 1.2:-49318931 None:intergenic
AAGATGTTCATGGCGAGACG+TGG 0.596686 1.2:+49318881 MS.gene45112:CDS
AGGCGGCAATGCAGATTCGA+TGG 0.597819 1.2:+49319349 MS.gene45112:CDS
TCTGATGCTAACAATGGTGG+AGG 0.600675 1.2:+49318772 MS.gene45112:CDS
GTTACCTGAAGAAGCCTCCA+AGG 0.601497 1.2:-49319489 None:intergenic
GCTGCAGATTATGACACTGT+TGG 0.602356 1.2:+49318697 MS.gene45112:CDS
TTCTGGAATAAGATTCAAGA+TGG 0.603114 1.2:+49319374 MS.gene45112:CDS
GGGTATTGGTGGTGGACATG+AGG 0.604425 1.2:+49319062 MS.gene45112:CDS
TTCTCATTCTGTGTAAACCA+AGG 0.607875 1.2:-49319132 None:intergenic
GCAGATTATGACACTGTTGG+AGG 0.608851 1.2:+49318700 MS.gene45112:CDS
TGGCCGAAAAGAACAAGCTG+AGG 0.609518 1.2:-49320293 None:intergenic
TTGGTTGTGAGAAAGGTGAA+AGG 0.610407 1.2:-49319905 None:intergenic
CAATCTGATGCTAACAATGG+TGG 0.611120 1.2:+49318769 MS.gene45112:CDS
GCATGTTCAGCATGACCTTG+AGG 0.617891 1.2:-49318520 None:intergenic
TCACAAGAAGCTTCTTGCCG+GGG 0.620934 1.2:+49318975 MS.gene45112:CDS
TCTGGAGCAGTCAAACACAT+TGG 0.623032 1.2:+49320659 MS.gene45112:CDS
ACTTATTCGAGACGAATCCT+CGG 0.623357 1.2:-49319406 None:intergenic
AATGTTCTGAAGAGGAGGGT+CGG 0.624657 1.2:-49318851 None:intergenic
AGACTGAGTAGAACTTGCCA+TGG 0.625027 1.2:-49320243 None:intergenic
GCACAAGCATGCCATAGTTG+AGG 0.626456 1.2:-49318448 None:intergenic
GGTAAGACTTGTTGATGACG+AGG 0.626525 1.2:-49320407 None:intergenic
ACTGAAATTTGGCCGTCGAG+GGG 0.629416 1.2:-49319963 None:intergenic
TTTCCCTCGTTTGGATTACG+CGG 0.631927 1.2:+49318828 MS.gene45112:CDS
AGGATCCATTACCATTAGGG+TGG 0.632365 1.2:+49319082 MS.gene45112:CDS
GCCAGAAGCGGTCCTTCAAG+CGG 0.635688 1.2:+49319236 MS.gene45112:CDS
TTTCTCGAATCAGAAGATGT+CGG 0.638567 1.2:+49320521 MS.gene45112:CDS
GGCTGATCCTGAAACAGATG+AGG 0.642209 1.2:+49318621 MS.gene45112:CDS
TCGAATCAGAAGATGTCGGT+CGG 0.645828 1.2:+49320525 MS.gene45112:CDS
ACTCAGGCGCGAATATGACT+GGG 0.647010 1.2:+49319199 MS.gene45112:CDS
AGGCGCGAATATGACTGGGA+GGG 0.648683 1.2:+49319203 MS.gene45112:CDS
TTTCACCTTTCTCACAACCA+AGG 0.649147 1.2:+49319907 MS.gene45112:CDS
GGAAAAGGTTAGGCCAGAAG+CGG 0.650274 1.2:+49319224 MS.gene45112:CDS
TGACTGCTCCAGATATATCA+CGG 0.657225 1.2:-49320649 None:intergenic
CCAAAATGTTCTGAAGAGGA+GGG 0.662547 1.2:-49318855 None:intergenic
ATCGTCTCAGCACAATACCT+AGG 0.664599 1.2:-49318805 None:intergenic
CCATTGGAAACTCTCACTAG+AGG 0.665637 1.2:-49320438 None:intergenic
CCTCTAGTGAGAGTTTCCAA+TGG 0.667381 1.2:+49320438 MS.gene45112:CDS
ACTCAATCTGATGCTAACAA+TGG 0.675509 1.2:+49318766 MS.gene45112:CDS
ACTCTGGCGTACTTGCGCGA+GGG 0.681238 1.2:-49319302 None:intergenic
AAGAAGGGTGAGTCCATGGT+TGG 0.682554 1.2:+49319851 MS.gene45112:CDS
CAGGCGCGAATATGACTGGG+AGG 0.684044 1.2:+49319202 MS.gene45112:CDS
GAGTACTTTCGGGTAGACAA+CGG 0.687017 1.2:-49320028 None:intergenic
ATTAGGTTATTAGAGACACT+AGG 0.687638 1.2:-49320176 None:intergenic
GGTGAATTAGGCCAGAGAAG+GGG 0.693414 1.2:-49319468 None:intergenic
AGCAGTCAAACACATTGGAG+AGG 0.695616 1.2:+49320664 MS.gene45112:CDS
CGGCCGCGTAATCCAAACGA+GGG 0.702235 1.2:-49318831 None:intergenic
AGAAGGTTACTAGGAAACGA+TGG 0.704217 1.2:-49319987 None:intergenic
GAAGGCGCCTTTAGTAGAGG+CGG 0.708805 1.2:+49319332 MS.gene45112:CDS
CACAGAATGAGAATCAAATG+GGG 0.710437 1.2:+49319142 MS.gene45112:CDS
GGTCATGCTGAACATGCATG+TGG 0.714823 1.2:+49318526 MS.gene45112:CDS
TTTATAGAGGAACACCGAGG+CGG 0.715637 1.2:+49318917 MS.gene45112:CDS
GACCTGCCTGAACTTTACTG+AGG 0.725533 1.2:-49320109 None:intergenic
TCGGCCGCGTAATCCAAACG+AGG 0.730598 1.2:-49318832 None:intergenic
ATATTTATAGAGGAACACCG+AGG 0.862150 1.2:+49318914 MS.gene45112:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTAATAAAATA+TGG - chr1.2:49319516-49319535 None:intergenic 10.0%
!! AATTGCATAATACTTAAATA+TGG + chr1.2:49319553-49319572 MS.gene45112:intron 15.0%
!! TTTGAAGATGAATATATTTA+TGG + chr1.2:49318366-49318385 MS.gene45112:CDS 15.0%
!!! AGTTTTATCTATTAAGTATA+TGG + chr1.2:49318600-49318619 MS.gene45112:CDS 15.0%
!! ATTAACAACAACAATAACAA+TGG + chr1.2:49319171-49319190 MS.gene45112:CDS 20.0%
!! TCATTAATTTAGTAATCAAG+TGG - chr1.2:49319651-49319670 None:intergenic 20.0%
!! TTAATAGATAAAACTTTGCA+TGG - chr1.2:49318595-49318614 None:intergenic 20.0%
!! TTTGTATGATTTCATTTGAT+AGG + chr1.2:49319734-49319753 MS.gene45112:intron 20.0%
!!! ATGATATTTTGTAGGTTAAA+TGG + chr1.2:49319802-49319821 MS.gene45112:intron 20.0%
!!! GTAGTATTATGATATTTTGT+AGG + chr1.2:49319794-49319813 MS.gene45112:intron 20.0%
!!! TGATATTTTGTAGGTTAAAT+GGG + chr1.2:49319803-49319822 MS.gene45112:intron 20.0%
! AAAGTTTATTACTTTCCTCA+AGG + chr1.2:49318505-49318524 MS.gene45112:CDS 25.0%
! AAGTTTAGGCATATTTATAG+AGG + chr1.2:49318904-49318923 MS.gene45112:CDS 25.0%
! AGATGGAAATACCAATAAAA+TGG + chr1.2:49320358-49320377 MS.gene45112:CDS 25.0%
! ATTTACTGCAAAATGTAAGA+AGG + chr1.2:49319835-49319854 MS.gene45112:CDS 25.0%
! ATTTCATTTGATAGGATCAT+AGG + chr1.2:49319742-49319761 MS.gene45112:intron 25.0%
! GATGGAAATACCAATAAAAT+GGG + chr1.2:49320359-49320378 MS.gene45112:CDS 25.0%
! TTTACTGCAAAATGTAAGAA+GGG + chr1.2:49319836-49319855 MS.gene45112:CDS 25.0%
!! GGAAAAATTACCCATTTTAT+TGG - chr1.2:49320372-49320391 None:intergenic 25.0%
AAAACTTTGCATGGAATCAA+AGG - chr1.2:49318586-49318605 None:intergenic 30.0%
AAAATGGTGATCTTTGTGTT+GGG + chr1.2:49319022-49319041 MS.gene45112:CDS 30.0%
AATAACAATGGTTTGAACTC+AGG + chr1.2:49319183-49319202 MS.gene45112:CDS 30.0%
AATGTCTTTGCAAATGAAAC+AGG - chr1.2:49318745-49318764 None:intergenic 30.0%
ACAATTGACCTTTCTTTACT+TGG + chr1.2:49320548-49320567 MS.gene45112:CDS 30.0%
ACACAGAATGAGAATCAAAT+GGG + chr1.2:49319141-49319160 MS.gene45112:CDS 30.0%
ATTAGGTTATTAGAGACACT+AGG - chr1.2:49320179-49320198 None:intergenic 30.0%
ATTCATCAGAAGAAGTTGAA+AGG + chr1.2:49318416-49318435 MS.gene45112:CDS 30.0%
CATAAGATCCAAGTAAAGAA+AGG - chr1.2:49320559-49320578 None:intergenic 30.0%
GAAATCATACAAAACTCAAC+AGG - chr1.2:49319727-49319746 None:intergenic 30.0%
TAAACTTTACTGTTCACTGT+TGG - chr1.2:49318493-49318512 None:intergenic 30.0%
TAACTTCATGAATTGTCCAA+AGG + chr1.2:49318555-49318574 MS.gene45112:CDS 30.0%
TACACAGAATGAGAATCAAA+TGG + chr1.2:49319140-49319159 MS.gene45112:CDS 30.0%
TGGCATAGAAAAATATGAGA+AGG + chr1.2:49320610-49320629 MS.gene45112:CDS 30.0%
! AAAATGGGTAATTTTTCCGA+TGG + chr1.2:49320374-49320393 MS.gene45112:CDS 30.0%
! AACAGAAGCACATTCTTAAA+TGG - chr1.2:49319695-49319714 None:intergenic 30.0%
! CTTACATTTTGCAGTAAATC+TGG - chr1.2:49319834-49319853 None:intergenic 30.0%
! TGCTAGATTTTTGCATCATT+AGG - chr1.2:49320196-49320215 None:intergenic 30.0%
!! TCTCGAATAAGTTGGTTTAT+GGG + chr1.2:49319417-49319436 MS.gene45112:CDS 30.0%
!! TTCTGGAATAAGATTCAAGA+TGG + chr1.2:49319374-49319393 MS.gene45112:CDS 30.0%
!!! ATTTTGGCTAAAGATGTTCA+TGG + chr1.2:49318871-49318890 MS.gene45112:CDS 30.0%
AAAGGTGAAAGGTTTATGGA+TGG - chr1.2:49319897-49319916 None:intergenic 35.0%
ACTCAATCTGATGCTAACAA+TGG + chr1.2:49318766-49318785 MS.gene45112:CDS 35.0%
AGTTTAGCAGCATGATCAAA+AGG - chr1.2:49320155-49320174 None:intergenic 35.0%
ATATTTATAGAGGAACACCG+AGG + chr1.2:49318914-49318933 MS.gene45112:CDS 35.0%
ATGAGGATCCATTACCATTA+GGG + chr1.2:49319079-49319098 MS.gene45112:CDS 35.0%
CACAGAATGAGAATCAAATG+GGG + chr1.2:49319142-49319161 MS.gene45112:CDS 35.0%
GAAAATGGTGATCTTTGTGT+TGG + chr1.2:49319021-49319040 MS.gene45112:CDS 35.0%
GACAATCTCAATTTCTTCCT+TGG - chr1.2:49319927-49319946 None:intergenic 35.0%
GGACAATTCATGAAGTTAAC+AGG - chr1.2:49318553-49318572 None:intergenic 35.0%
GGGTAGTAAATAACCTCAAA+CGG - chr1.2:49319285-49319304 None:intergenic 35.0%
TCATTATGGTCTTCCGATAT+CGG + chr1.2:49320079-49320098 MS.gene45112:CDS 35.0%
TCTAATGACCATTCATCAGA+TGG + chr1.2:49320341-49320360 MS.gene45112:CDS 35.0%
TGAGAAAGGTGAAAGGTTTA+TGG - chr1.2:49319901-49319920 None:intergenic 35.0%
TGAGAGTTTCCAATGGTATA+AGG + chr1.2:49320445-49320464 MS.gene45112:CDS 35.0%
TGGTATTTCCATCTGATGAA+TGG - chr1.2:49320352-49320371 None:intergenic 35.0%
TGGTTTATGGGAATTGTATC+TGG + chr1.2:49319429-49319448 MS.gene45112:CDS 35.0%
TTCTCATTCTGTGTAAACCA+AGG - chr1.2:49319135-49319154 None:intergenic 35.0%
TTTCTCGAATCAGAAGATGT+CGG + chr1.2:49320521-49320540 MS.gene45112:CDS 35.0%
! AAGCTTAAGCTTGTTCCTTT+GGG + chr1.2:49318652-49318671 MS.gene45112:CDS 35.0%
! AGAGGAAAATTTTCTCCAAC+AGG - chr1.2:49319111-49319130 None:intergenic 35.0%
! GAGAAAATTTTCCTCTTCCT+TGG + chr1.2:49319115-49319134 MS.gene45112:CDS 35.0%
! TAAGCTTAAGCTTGTTCCTT+TGG + chr1.2:49318651-49318670 MS.gene45112:CDS 35.0%
!! AAACCTCAGCTTGTTCTTTT+CGG + chr1.2:49320290-49320309 MS.gene45112:CDS 35.0%
!! GTCATTAGAGATTTGTTGCT+CGG - chr1.2:49320330-49320349 None:intergenic 35.0%
!! GTCTCGAATAAGTTGGTTTA+TGG + chr1.2:49319416-49319435 MS.gene45112:CDS 35.0%
!! TTAGCCAAAATGTTCTGAAG+AGG - chr1.2:49318862-49318881 None:intergenic 35.0%
!! TTCGATTGTGTTTTTGAGAG+CGG + chr1.2:49318999-49319018 MS.gene45112:CDS 35.0%
AATCACAAGAAGCTTCTTGC+CGG + chr1.2:49318973-49318992 MS.gene45112:CDS 40.0%
ACTTATTCGAGACGAATCCT+CGG - chr1.2:49319409-49319428 None:intergenic 40.0%
AGAAGGTTACTAGGAAACGA+TGG - chr1.2:49319990-49320009 None:intergenic 40.0%
AGGATTCGTCTCGAATAAGT+TGG + chr1.2:49319409-49319428 MS.gene45112:CDS 40.0%
CAAAAACACAATCGAATCCC+CGG - chr1.2:49318995-49319014 None:intergenic 40.0%
CAATCTGATGCTAACAATGG+TGG + chr1.2:49318769-49318788 MS.gene45112:CDS 40.0%
CATGAGGATCCATTACCATT+AGG + chr1.2:49319078-49319097 MS.gene45112:CDS 40.0%
GCATAAACCTCATCTGTTTC+AGG - chr1.2:49318631-49318650 None:intergenic 40.0%
GCTACTAATTCAACCAACCA+TGG - chr1.2:49319867-49319886 None:intergenic 40.0%
GGAATCAAAGGTGAAACCTT+TGG - chr1.2:49318574-49318593 None:intergenic 40.0%
GGTGTTTAGATCCTCAACTA+TGG + chr1.2:49318437-49318456 MS.gene45112:CDS 40.0%
TAAGGATAACCGCGAAGAAA+CGG + chr1.2:49320463-49320482 MS.gene45112:CDS 40.0%
TCGTTTCCTAGTAACCTTCT+AGG + chr1.2:49319990-49320009 MS.gene45112:CDS 40.0%
TGACTGCTCCAGATATATCA+CGG - chr1.2:49320652-49320671 None:intergenic 40.0%
TGATGAACTGTACAGAAAGC+TGG + chr1.2:49320577-49320596 MS.gene45112:CDS 40.0%
TGTCTCTTGCTTACTATCCA+TGG + chr1.2:49320226-49320245 MS.gene45112:CDS 40.0%
TTCTGTGTAAACCAAGGAAG+AGG - chr1.2:49319129-49319148 None:intergenic 40.0%
TTCTTCCTTGGTTGTGAGAA+AGG - chr1.2:49319915-49319934 None:intergenic 40.0%
TTGGTTGTGAGAAAGGTGAA+AGG - chr1.2:49319908-49319927 None:intergenic 40.0%
TTTCACCTTTCTCACAACCA+AGG + chr1.2:49319907-49319926 MS.gene45112:CDS 40.0%
! ATGATCAAAAGGCACGAAAC+CGG - chr1.2:49320144-49320163 None:intergenic 40.0%
! GAAACGATGGCACTGAAATT+TGG - chr1.2:49319977-49319996 None:intergenic 40.0%
! GGGTAATTTTTCCGATGGTT+CGG + chr1.2:49320379-49320398 MS.gene45112:CDS 40.0%
! GGTAATTTTTCCGATGGTTC+GGG + chr1.2:49320380-49320399 MS.gene45112:CDS 40.0%
!! CCAAAATGTTCTGAAGAGGA+GGG - chr1.2:49318858-49318877 None:intergenic 40.0%
!! GTGTTTTTGAGAGCGGAAAA+TGG + chr1.2:49319006-49319025 MS.gene45112:CDS 40.0%
!!! GTTGCTCGGTGAGAATTTTT+TGG - chr1.2:49320316-49320335 None:intergenic 40.0%
AAGACCATAATGAGCATGCC+TGG - chr1.2:49320072-49320091 None:intergenic 45.0%
AAGGTGAATTAGGCCAGAGA+AGG - chr1.2:49319473-49319492 None:intergenic 45.0%
AGAAAGCTGGCAGACATGTT+TGG + chr1.2:49320590-49320609 MS.gene45112:CDS 45.0%
AGAAGCCTCCAAGGTGAATT+AGG - chr1.2:49319483-49319502 None:intergenic 45.0%
AGACGAATCCTCGGTTTCAA+AGG - chr1.2:49319400-49319419 None:intergenic 45.0%
AGACTGAGTAGAACTTGCCA+TGG - chr1.2:49320246-49320265 None:intergenic 45.0%
AGCAGTCAAACACATTGGAG+AGG + chr1.2:49320664-49320683 MS.gene45112:CDS 45.0%
AGGATCCATTACCATTAGGG+TGG + chr1.2:49319082-49319101 MS.gene45112:CDS 45.0%
AGGTGAATTAGGCCAGAGAA+GGG - chr1.2:49319472-49319491 None:intergenic 45.0%
AGTTCAGGCAGGTCTATTTC+CGG + chr1.2:49320118-49320137 MS.gene45112:CDS 45.0%
ATAGGTTGCTCTGACCTAGA+AGG - chr1.2:49320007-49320026 None:intergenic 45.0%
ATCACAAGAAGCTTCTTGCC+GGG + chr1.2:49318974-49318993 MS.gene45112:CDS 45.0%
ATCGTCTCAGCACAATACCT+AGG - chr1.2:49318808-49318827 None:intergenic 45.0%
ATGCAGATTCGATGGTGTTC+TGG + chr1.2:49319357-49319376 MS.gene45112:CDS 45.0%
ATGTAAGAAGGGTGAGTCCA+TGG + chr1.2:49319847-49319866 MS.gene45112:CDS 45.0%
CCATTACCATTTCCACCCAA+AGG - chr1.2:49318670-49318689 None:intergenic 45.0%
CCATTGGAAACTCTCACTAG+AGG - chr1.2:49320441-49320460 None:intergenic 45.0%
CCTCTAGTGAGAGTTTCCAA+TGG + chr1.2:49320438-49320457 MS.gene45112:CDS 45.0%
CCTTCAAGCGGTAACTTTAG+CGG + chr1.2:49319248-49319267 MS.gene45112:CDS 45.0%
CCTTTGGGTGGAAATGGTAA+TGG + chr1.2:49318667-49318686 MS.gene45112:CDS 45.0%
CGAAGAAACGGAAGCAAGTT+TGG + chr1.2:49320475-49320494 MS.gene45112:CDS 45.0%
CGCGGTTATCCTTATACCAT+TGG - chr1.2:49320457-49320476 None:intergenic 45.0%
CTCTGACCTAGAAGGTTACT+AGG - chr1.2:49319999-49320018 None:intergenic 45.0%
CTTGTTCCTTTGGGTGGAAA+TGG + chr1.2:49318661-49318680 MS.gene45112:CDS 45.0%
GAATATGACTGGGAGGGAAA+AGG + chr1.2:49319209-49319228 MS.gene45112:CDS 45.0%
GCAGATTATGACACTGTTGG+AGG + chr1.2:49318700-49318719 MS.gene45112:CDS 45.0%
GCTGCAGATTATGACACTGT+TGG + chr1.2:49318697-49318716 MS.gene45112:CDS 45.0%
GGAAGCAAGTTTGGAGAGTA+CGG + chr1.2:49320484-49320503 MS.gene45112:CDS 45.0%
GGATTCCACCCTAATGGTAA+TGG - chr1.2:49319090-49319109 None:intergenic 45.0%
GGCTAATAAGCAACCGTTTG+AGG + chr1.2:49319269-49319288 MS.gene45112:CDS 45.0%
GTGCTCTACCGTGATATATC+TGG + chr1.2:49320641-49320660 MS.gene45112:CDS 45.0%
TCGAATCAGAAGATGTCGGT+CGG + chr1.2:49320525-49320544 MS.gene45112:CDS 45.0%
TCTCCACCTCAGTAAAGTTC+AGG + chr1.2:49320103-49320122 MS.gene45112:CDS 45.0%
TCTGATGCTAACAATGGTGG+AGG + chr1.2:49318772-49318791 MS.gene45112:CDS 45.0%
TTCTCTGGCCTAATTCACCT+TGG + chr1.2:49319472-49319491 MS.gene45112:CDS 45.0%
TTTATAGAGGAACACCGAGG+CGG + chr1.2:49318917-49318936 MS.gene45112:CDS 45.0%
TTTCCCTCGTTTGGATTACG+CGG + chr1.2:49318828-49318847 MS.gene45112:CDS 45.0%
! AACTTGCTTCCGTTTCTTCG+CGG - chr1.2:49320475-49320494 None:intergenic 45.0%
! CCCTCCTCTTCAGAACATTT+TGG + chr1.2:49318855-49318874 MS.gene45112:CDS 45.0%
! CTTAAGCTTGTTCCTTTGGG+TGG + chr1.2:49318655-49318674 MS.gene45112:CDS 45.0%
! GAGTACTTTCGGGTAGACAA+CGG - chr1.2:49320031-49320050 None:intergenic 45.0%
! GTGGAGGTTTTTCTGTTCCT+AGG + chr1.2:49318788-49318807 MS.gene45112:CDS 45.0%
! TCTGGAGCAGTCAAACACAT+TGG + chr1.2:49320659-49320678 MS.gene45112:CDS 45.0%
! TGAGACGATTTTCCCTCGTT+TGG + chr1.2:49318819-49318838 MS.gene45112:CDS 45.0%
! TTTCGGGTAGACAACGGAAT+AGG - chr1.2:49320025-49320044 None:intergenic 45.0%
!! AATGTTCTGAAGAGGAGGGT+CGG - chr1.2:49318854-49318873 None:intergenic 45.0%
!! AGTTTGTTGATCCCCTTCTC+TGG + chr1.2:49319457-49319476 MS.gene45112:CDS 45.0%
!! GCCAAAATGTTCTGAAGAGG+AGG - chr1.2:49318859-49318878 None:intergenic 45.0%
!! GGCATCTTTTGACTACTGGT+TGG + chr1.2:49318938-49318957 MS.gene45112:CDS 45.0%
!! GGTAAGACTTGTTGATGACG+AGG - chr1.2:49320410-49320429 None:intergenic 45.0%
!! TACGCCAGAGTTTTGTGTGA+AGG + chr1.2:49319314-49319333 MS.gene45112:CDS 45.0%
AACTCAGGCGCGAATATGAC+TGG + chr1.2:49319198-49319217 MS.gene45112:CDS 50.0%
AAGAAGGGTGAGTCCATGGT+TGG + chr1.2:49319851-49319870 MS.gene45112:CDS 50.0%
AAGATGTTCATGGCGAGACG+TGG + chr1.2:49318881-49318900 MS.gene45112:CDS 50.0%
ACTCAGGCGCGAATATGACT+GGG + chr1.2:49319199-49319218 MS.gene45112:CDS 50.0%
ACTGAAATTTGGCCGTCGAG+GGG - chr1.2:49319966-49319985 None:intergenic 50.0%
ATGGCGAGACGTGGAAGTTT+AGG + chr1.2:49318890-49318909 MS.gene45112:CDS 50.0%
CAACTATGGCATGCTTGTGC+AGG + chr1.2:49318451-49318470 MS.gene45112:CDS 50.0%
CACCTCAGTAAAGTTCAGGC+AGG + chr1.2:49320107-49320126 MS.gene45112:CDS 50.0%
CACTGAAATTTGGCCGTCGA+GGG - chr1.2:49319967-49319986 None:intergenic 50.0%
CCAACAGGATTCCACCCTAA+TGG - chr1.2:49319096-49319115 None:intergenic 50.0%
CCATTAGGGTGGAATCCTGT+TGG + chr1.2:49319093-49319112 MS.gene45112:CDS 50.0%
CCGCTAAAGTTACCGCTTGA+AGG - chr1.2:49319251-49319270 None:intergenic 50.0%
CTGAGGTGGAGATCCGATAT+CGG - chr1.2:49320095-49320114 None:intergenic 50.0%
CTGCCTGAACTTTACTGAGG+TGG - chr1.2:49320109-49320128 None:intergenic 50.0%
GACCTGCCTGAACTTTACTG+AGG - chr1.2:49320112-49320131 None:intergenic 50.0%
GCACAAGCATGCCATAGTTG+AGG - chr1.2:49318451-49318470 None:intergenic 50.0%
GCATGTTCAGCATGACCTTG+AGG - chr1.2:49318523-49318542 None:intergenic 50.0%
GGAAAAGGTTAGGCCAGAAG+CGG + chr1.2:49319224-49319243 MS.gene45112:CDS 50.0%
GGCTGATCCTGAAACAGATG+AGG + chr1.2:49318621-49318640 MS.gene45112:CDS 50.0%
GGTCATGCTGAACATGCATG+TGG + chr1.2:49318526-49318545 MS.gene45112:CDS 50.0%
GGTGAATTAGGCCAGAGAAG+GGG - chr1.2:49319471-49319490 None:intergenic 50.0%
GTAGTCAAAAGATGCCGCCT+CGG - chr1.2:49318934-49318953 None:intergenic 50.0%
GTTACCTGAAGAAGCCTCCA+AGG - chr1.2:49319492-49319511 None:intergenic 50.0%
TCACAAGAAGCTTCTTGCCG+GGG + chr1.2:49318975-49318994 MS.gene45112:CDS 50.0%
TCTGGCCTAATTCACCTTGG+AGG + chr1.2:49319475-49319494 MS.gene45112:CDS 50.0%
TGACTGGGAGGGAAAAGGTT+AGG + chr1.2:49319214-49319233 MS.gene45112:CDS 50.0%
TGCATTGCCGCCTCTACTAA+AGG - chr1.2:49319342-49319361 None:intergenic 50.0%
TGGCCGAAAAGAACAAGCTG+AGG - chr1.2:49320296-49320315 None:intergenic 50.0%
TTCACCTTGGAGGCTTCTTC+AGG + chr1.2:49319485-49319504 MS.gene45112:CDS 50.0%
!! AGGCGGCATCTTTTGACTAC+TGG + chr1.2:49318934-49318953 MS.gene45112:CDS 50.0%
!! ATGCCAGCAGGAGTACTTTC+GGG - chr1.2:49320041-49320060 None:intergenic 50.0%
!! CAAGATGGCCTTTGAAACCG+AGG + chr1.2:49319389-49319408 MS.gene45112:CDS 50.0%
!! CATGCCAGCAGGAGTACTTT+CGG - chr1.2:49320042-49320061 None:intergenic 50.0%
!! TGTGAAGGCGCCTTTAGTAG+AGG + chr1.2:49319329-49319348 MS.gene45112:CDS 50.0%
!!! CTCTCACTAGAGGAGCGTTT+TGG - chr1.2:49320431-49320450 None:intergenic 50.0%
AAGTACTCCTGCTGGCATGC+AGG + chr1.2:49320043-49320062 MS.gene45112:CDS 55.0%
ACGAGGAGTTCCCGAACCAT+CGG - chr1.2:49320393-49320412 None:intergenic 55.0%
ACGCGTAATGCACAGTGCGA+AGG - chr1.2:49319615-49319634 None:intergenic 55.0%
AGGCGCGAATATGACTGGGA+GGG + chr1.2:49319203-49319222 MS.gene45112:CDS 55.0%
AGGCGGCAATGCAGATTCGA+TGG + chr1.2:49319349-49319368 MS.gene45112:CDS 55.0%
AGTACTCCTGCTGGCATGCA+GGG + chr1.2:49320044-49320063 MS.gene45112:CDS 55.0%
CTATGGCATGCTTGTGCAGG+TGG + chr1.2:49318454-49318473 MS.gene45112:CDS 55.0%
CTGAAATTTGGCCGTCGAGG+GGG - chr1.2:49319965-49319984 None:intergenic 55.0%
GCACTGAAATTTGGCCGTCG+AGG - chr1.2:49319968-49319987 None:intergenic 55.0%
GCATGCTTGTGCAGGTGGAA+TGG + chr1.2:49318459-49318478 MS.gene45112:CDS 55.0%
GGAGCCAGGCATGCTCATTA+TGG + chr1.2:49320065-49320084 MS.gene45112:CDS 55.0%
GGCGCCTTCACACAAAACTC+TGG - chr1.2:49319321-49319340 None:intergenic 55.0%
GGGATTCGACGAGCGAAGAA+GGG + chr1.2:49319042-49319061 MS.gene45112:CDS 55.0%
TGGGATTCGACGAGCGAAGA+AGG + chr1.2:49319041-49319060 MS.gene45112:CDS 55.0%
! CGACGAGCGAAGAAGGGTAT+TGG + chr1.2:49319048-49319067 MS.gene45112:CDS 55.0%
! TCAAAAGGCACGAAACCGGC+CGG - chr1.2:49320140-49320159 None:intergenic 55.0%
!! CGAGCGAAGAAGGGTATTGG+TGG + chr1.2:49319051-49319070 MS.gene45112:CDS 55.0%
!! CTACCCGAAAGTACTCCTGC+TGG + chr1.2:49320035-49320054 MS.gene45112:CDS 55.0%
!! GAAGGCGCCTTTAGTAGAGG+CGG + chr1.2:49319332-49319351 MS.gene45112:CDS 55.0%
!! GCGAAGAAGGGTATTGGTGG+TGG + chr1.2:49319054-49319073 MS.gene45112:CDS 55.0%
!! GGGTATTGGTGGTGGACATG+AGG + chr1.2:49319062-49319081 MS.gene45112:CDS 55.0%
AACTCTGGCGTACTTGCGCG+AGG - chr1.2:49319306-49319325 None:intergenic 60.0%
ACCGCTTGAAGGACCGCTTC+TGG - chr1.2:49319240-49319259 None:intergenic 60.0%
ACTCTGGCGTACTTGCGCGA+GGG - chr1.2:49319305-49319324 None:intergenic 60.0%
CACCACGATTTCCCCCTCGA+CGG + chr1.2:49319951-49319970 MS.gene45112:CDS 60.0%
CAGGCAGGTCTATTTCCGGC+CGG + chr1.2:49320122-49320141 MS.gene45112:CDS 60.0%
CAGGCGCGAATATGACTGGG+AGG + chr1.2:49319202-49319221 MS.gene45112:CDS 60.0%
CGGCCGCGTAATCCAAACGA+GGG - chr1.2:49318834-49318853 None:intergenic 60.0%
GCCAGAAGCGGTCCTTCAAG+CGG + chr1.2:49319236-49319255 MS.gene45112:CDS 60.0%
TCGAGGGGGAAATCGTGGTG+TGG - chr1.2:49319951-49319970 None:intergenic 60.0%
TCGGCCGCGTAATCCAAACG+AGG - chr1.2:49318835-49318854 None:intergenic 60.0%
CTGCTGGCATGCAGGGAGCC+AGG + chr1.2:49320051-49320070 MS.gene45112:CDS 70.0%
CTGGCTCCCTGCATGCCAGC+AGG - chr1.2:49320053-49320072 None:intergenic 70.0%
GGCCGTCGAGGGGGAAATCG+TGG - chr1.2:49319956-49319975 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49318346 49320696 49318346 ID=MS.gene45112
chr1.2 mRNA 49318346 49320696 49318346 ID=MS.gene45112.t1;Parent=MS.gene45112
chr1.2 exon 49318346 49319506 49318346 ID=MS.gene45112.t1.exon1;Parent=MS.gene45112.t1
chr1.2 CDS 49318346 49319506 49318346 ID=cds.MS.gene45112.t1;Parent=MS.gene45112.t1
chr1.2 exon 49319816 49320696 49319816 ID=MS.gene45112.t1.exon2;Parent=MS.gene45112.t1
chr1.2 CDS 49319816 49320696 49319816 ID=cds.MS.gene45112.t1;Parent=MS.gene45112.t1
Gene Sequence

>MS.gene45112

AAATTTTGCAGTGAAAGTTTTTTGAAGATGAATATATTTATGGATTCAAGAGATAATAACAATAATAACAATTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTTCACCTTTGATTCCATGCAAAGTTTTATCTATTAAGTATATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGGGTGGAAATGGTAATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCTGAGACGATTTTCCCTCGTTTGGATTACGCGGCCGACCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGAACACCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCGATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAATAACAATGGTTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAGGTTAGGCCAGAAGCGGTCCTTCAAGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTATTTACTACCCTCGCGCAAGTACGCCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTAACACCATATTTTATTAAATTTGATGTCAATTAACAGAACATAAAATTGCATAATACTTAAATATGGTAATCTTCTCTCTTGCTAATCTTTAATTTATGTTATCCTTCGCACTGTGCATTACGCGTACACGTTGAGTTACCACTTGATTACTAAATTAATGAACTCTGATGTTGTTTGTTAATCCATTTAAGAATGTGCTTCTGTTATTTTGTTACCTGTTGAGTTTTGTATGATTTCATTTGATAGGATCATAGGAATATTTGCATTGTGTCTACTCATAATAAGTAGTATTATGATATTTTGTAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTAAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCTCCACACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCACGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCAAAGAAATTCAACGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACCGAGCAACAAATCTCTAATGACCATTCATCAGATGGAAATACCAATAAAATGGGTAATTTTTCCGATGGTTCGGGAACTCCTCGTCATCAACAAGTCTTACCAAAACGCTCCTCTAGTGAGAGTTTCCAATGGTATAAGGATAACCGCGAAGAAACGGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGGACAATTGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGTCGCGTGCTCTACCGTGATATATCTGGAGCAGTCAAACACATTGGAGAGGAACCATTCAG
Protein sequence

>MS.gene45112.t1

KFCSESFLKMNIFMDSRDNNNNNNSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVLSIKYMADPETDEVYAKLKLVPLGGNGNGNDAADYDTVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNNNNGLNSGANMTGREKVRPEAVLQAVTLAANKQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSTSENVSCLLSMASSTQSSKKFNDEKKPQLVLFGQKILTEQQISNDHSSDGNTNKMGNFSDGSGTPRHQQVLPKRSSSESFQWYKDNREETEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEEPF