AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056152

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056152.t1 MTR_1g064430 97.474 673 13 2 1 671 1 671 0.0 1360
MS.gene056152.t1 MTR_1g064430 97.474 673 13 2 1 671 14 684 0.0 1359
MS.gene056152.t1 MTR_2g094570 56.647 692 252 14 2 671 41 706 0.0 731
MS.gene056152.t1 MTR_2g094570 57.652 673 238 13 20 671 4 650 0.0 729
MS.gene056152.t1 MTR_2g094570 57.652 673 238 13 20 671 4 650 0.0 728
MS.gene056152.t1 MTR_4g058930 58.902 674 218 13 24 671 9 649 0.0 715
MS.gene056152.t1 MTR_4g058930 58.902 674 218 13 24 671 9 649 0.0 714
MS.gene056152.t1 MTR_7g101280 54.892 603 239 11 20 609 24 606 0.0 623
MS.gene056152.t1 MTR_0041s0110 54.892 603 239 11 20 609 24 606 0.0 623
MS.gene056152.t1 MTR_1g094960 50.000 644 241 12 1 602 1 605 0.0 568
MS.gene056152.t1 MTR_7g101275 50.000 408 145 5 36 432 1 360 9.04e-125 376
MS.gene056152.t1 MTR_0041s0120 50.000 408 157 7 36 432 1 372 6.43e-122 369
MS.gene056152.t1 MTR_3g073420 41.397 587 289 16 24 584 16 573 1.32e-117 364
MS.gene056152.t1 MTR_5g061220 42.765 463 212 14 22 470 14 437 1.87e-103 325
MS.gene056152.t1 MTR_2g024430 41.422 408 163 11 24 420 17 359 5.50e-89 287
MS.gene056152.t1 MTR_5g040880 38.821 407 185 7 21 422 5 352 8.43e-87 281
MS.gene056152.t1 MTR_5g082140 37.882 425 194 10 24 439 9 372 4.87e-80 262
MS.gene056152.t1 MTR_1g058210 36.190 420 203 10 22 433 7 369 1.27e-79 261
MS.gene056152.t1 MTR_4g021580 30.466 686 385 19 11 671 3 621 4.59e-79 265
MS.gene056152.t1 MTR_4g021580 30.073 685 389 18 11 671 3 621 5.58e-79 264
MS.gene056152.t1 MTR_2g093740 38.221 416 198 10 27 428 56 426 3.30e-77 261
MS.gene056152.t1 MTR_2g014770 36.446 439 214 11 23 450 51 435 3.35e-77 259
MS.gene056152.t1 MTR_4g060460 30.028 716 386 21 27 671 54 725 6.38e-77 262
MS.gene056152.t1 MTR_2g093740 38.221 416 198 10 27 428 56 426 1.61e-76 260
MS.gene056152.t1 MTR_2g014770 36.446 439 214 11 23 450 51 435 1.76e-76 258
MS.gene056152.t1 MTR_2g093740 38.221 416 198 10 27 428 56 426 3.00e-76 261
MS.gene056152.t1 MTR_8g100050 35.492 417 219 6 6 417 38 409 1.02e-75 257
MS.gene056152.t1 MTR_8g100050 35.492 417 219 6 6 417 38 409 4.95e-75 258
MS.gene056152.t1 MTR_1g024025 37.209 387 190 6 20 399 36 376 1.47e-74 261
MS.gene056152.t1 MTR_2g005240 31.587 668 358 19 27 671 23 614 4.70e-74 252
MS.gene056152.t1 MTR_2g093740 37.063 429 198 11 27 428 56 439 2.27e-73 251
MS.gene056152.t1 MTR_2g093740 37.063 429 198 11 27 428 56 439 8.66e-73 250
MS.gene056152.t1 MTR_2g093740 37.063 429 198 11 27 428 56 439 1.18e-72 251
MS.gene056152.t1 MTR_4g060460 36.867 415 204 8 27 425 54 426 7.25e-72 248
MS.gene056152.t1 MTR_4g088210 35.455 440 222 10 23 448 36 427 8.53e-72 246
MS.gene056152.t1 MTR_4g088210 32.635 573 293 18 23 577 36 533 9.91e-72 246
MS.gene056152.t1 MTR_5g040740 37.867 375 165 7 24 389 9 324 1.06e-71 238
MS.gene056152.t1 MTR_2g006270 34.414 401 194 11 26 417 12 352 2.12e-71 239
MS.gene056152.t1 MTR_2g018690 36.658 401 203 8 18 412 14 369 2.19e-71 249
MS.gene056152.t1 MTR_5g076270 35.038 391 204 7 21 405 18 364 3.16e-70 244
MS.gene056152.t1 MTR_8g079492 36.000 400 206 8 18 412 14 368 9.27e-70 244
MS.gene056152.t1 MTR_8g079492 36.000 400 206 8 18 412 14 368 9.83e-70 244
MS.gene056152.t1 MTR_4g124900 37.530 413 208 7 5 412 1 368 1.15e-69 246
MS.gene056152.t1 MTR_4g124900 37.530 413 208 7 5 412 1 368 1.16e-69 246
MS.gene056152.t1 MTR_8g101360 38.342 386 186 6 24 402 28 368 3.22e-68 242
MS.gene056152.t1 MTR_3g064050 34.271 391 207 8 21 405 20 366 1.79e-65 231
MS.gene056152.t1 MTR_2g006380 33.251 403 193 12 24 417 17 352 1.02e-64 221
MS.gene056152.t1 MTR_8g027440 37.221 403 192 10 27 420 29 379 2.31e-64 225
MS.gene056152.t1 MTR_7g062540 34.529 446 220 14 15 451 4 386 1.03e-63 224
MS.gene056152.t1 MTR_2g093740 40.461 304 134 5 127 428 38 296 4.05e-59 210
MS.gene056152.t1 MTR_2g093740 40.461 304 134 5 127 428 38 296 7.02e-59 210
MS.gene056152.t1 MTR_2g043250 47.059 221 110 2 15 230 11 229 5.86e-58 212
MS.gene056152.t1 MTR_2g043250 40.777 103 60 1 300 402 257 358 8.52e-17 85.5
MS.gene056152.t1 MTR_5g060780 35.749 414 194 15 24 425 9 362 6.82e-57 198
MS.gene056152.t1 MTR_5g061890 34.821 448 209 18 24 448 9 396 1.03e-56 197
MS.gene056152.t1 MTR_5g460920 35.507 414 195 15 24 425 9 362 6.75e-56 196
MS.gene056152.t1 MTR_2g093740 38.801 317 134 6 127 428 38 309 1.74e-55 200
MS.gene056152.t1 MTR_2g093740 38.801 317 134 6 127 428 38 309 2.57e-55 201
MS.gene056152.t1 MTR_8g079492 35.866 329 166 7 84 412 3 286 4.70e-52 193
MS.gene056152.t1 MTR_5g060630 29.679 529 247 18 22 480 7 480 9.47e-50 182
MS.gene056152.t1 MTR_5g460740 29.679 529 247 18 22 480 7 480 9.47e-50 182
MS.gene056152.t1 MTR_5g062970 41.667 192 106 4 27 215 38 226 9.39e-47 166
MS.gene056152.t1 MTR_8g446900 29.630 378 197 11 73 448 12 322 9.07e-44 162
MS.gene056152.t1 MTR_5g062960 35.955 178 88 6 293 467 1 155 5.81e-23 97.4
MS.gene056152.t1 MTR_3g064050 39.216 102 60 2 305 405 29 129 3.16e-15 79.7
MS.gene056152.t1 MTR_5g060770 32.895 152 87 5 72 221 6 144 7.14e-15 77.0
MS.gene056152.t1 MTR_5g060770 32.990 194 100 8 291 474 142 315 9.64e-15 76.6
MS.gene056152.t1 MTR_5g032260 38.095 105 63 2 293 396 49 152 1.81e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056152.t1 AT4G30080 55.255 666 254 13 20 671 12 647 0.0 675
MS.gene056152.t1 AT2G28350 53.148 683 250 18 19 671 2 644 0.0 635
MS.gene056152.t1 AT2G28350 53.148 683 250 18 19 671 2 644 0.0 634
MS.gene056152.t1 AT1G77850 42.358 458 233 11 22 469 14 450 1.41e-113 354
MS.gene056152.t1 AT1G77850 42.358 458 233 11 22 469 14 450 1.69e-113 353
MS.gene056152.t1 AT1G59750 31.571 662 357 16 27 671 22 604 5.18e-78 262
MS.gene056152.t1 AT1G59750 31.763 658 366 14 27 671 22 609 1.39e-77 261
MS.gene056152.t1 AT1G59750 31.763 658 366 14 27 671 22 609 1.39e-77 261
MS.gene056152.t1 AT1G59750 31.476 664 357 17 27 671 22 606 7.46e-77 259
MS.gene056152.t1 AT1G19850 37.859 383 186 6 24 399 40 377 4.49e-76 261
MS.gene056152.t1 AT1G19850 37.859 383 186 6 24 399 51 388 7.37e-76 261
MS.gene056152.t1 AT2G33860 35.792 461 233 11 23 468 52 464 1.98e-75 254
MS.gene056152.t1 AT5G60450 37.838 407 189 11 27 417 41 399 9.72e-75 256
MS.gene056152.t1 AT5G60450 37.838 407 189 11 27 417 65 423 2.51e-74 255
MS.gene056152.t1 AT5G37020 36.041 394 200 6 19 405 14 362 3.61e-73 251
MS.gene056152.t1 AT5G37020 36.041 394 200 6 19 405 14 362 9.67e-73 251
MS.gene056152.t1 AT4G23980 30.075 665 358 18 27 671 12 589 3.23e-72 246
MS.gene056152.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.23e-72 249
MS.gene056152.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene056152.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene056152.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene056152.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene056152.t1 AT2G46530 29.812 691 327 22 2 671 3 556 1.06e-71 244
MS.gene056152.t1 AT2G46530 30.180 666 314 21 27 671 42 577 6.90e-71 242
MS.gene056152.t1 AT3G61830 35.147 441 224 12 9 442 7 392 9.49e-71 241
MS.gene056152.t1 AT4G23980 29.774 665 358 18 27 671 12 587 1.29e-70 241
MS.gene056152.t1 AT1G30330 35.910 401 206 9 18 412 14 369 6.13e-69 243
MS.gene056152.t1 AT1G30330 35.930 398 204 9 21 412 19 371 8.75e-69 242
MS.gene056152.t1 AT1G30330 35.930 398 204 9 21 412 19 371 8.75e-69 242
MS.gene056152.t1 AT5G20730 36.609 407 208 6 15 416 12 373 1.03e-66 238
MS.gene056152.t1 AT1G19220 36.855 407 207 6 15 416 11 372 1.20e-66 238
MS.gene056152.t1 AT5G20730 36.520 408 208 7 15 416 12 374 1.82e-65 234
MS.gene056152.t1 AT5G20730 36.520 408 208 7 15 416 12 374 2.02e-65 234
MS.gene056152.t1 AT1G35520 29.874 636 317 20 27 646 27 549 1.46e-60 213
MS.gene056152.t1 AT1G34410 28.463 657 352 19 27 671 27 577 1.45e-59 211
MS.gene056152.t1 AT1G34390 29.253 629 328 21 27 646 27 547 8.60e-58 206
MS.gene056152.t1 AT3G61830 35.925 373 183 10 71 442 24 341 1.47e-57 204
MS.gene056152.t1 AT1G34310 34.988 403 196 11 27 420 27 372 1.56e-57 205
MS.gene056152.t1 AT1G35240 34.048 420 210 11 27 437 27 388 2.22e-57 204
MS.gene056152.t1 AT1G35540 34.336 399 199 10 27 417 27 370 5.26e-57 204
MS.gene056152.t1 AT2G33860 36.467 351 169 8 127 468 2 307 4.25e-56 197
MS.gene056152.t1 AT1G34170 32.587 402 204 11 27 418 25 369 1.27e-53 192
MS.gene056152.t1 AT2G46530 29.570 558 257 18 126 671 36 469 1.35e-51 187
MS.gene056152.t1 AT5G37020 36.429 280 134 4 127 405 31 267 1.57e-48 182
MS.gene056152.t1 AT1G34170 31.095 402 184 11 27 418 25 343 4.84e-47 173
MS.gene056152.t1 AT1G34170 31.095 402 184 11 27 418 25 343 1.99e-46 173
MS.gene056152.t1 AT1G43950 41.346 208 102 7 27 226 27 222 3.26e-38 141
MS.gene056152.t1 AT2G46870 34.862 109 64 2 116 224 24 125 2.84e-11 65.5
MS.gene056152.t1 AT3G25730 36.458 96 59 1 127 220 183 278 6.27e-11 64.7
MS.gene056152.t1 AT3G61970 27.670 206 120 7 119 303 4 201 7.13e-11 64.3

Find 181 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGATGAATATATTTA+TGG 0.118268 1.2:+49246590 None:intergenic
GTCTCGAATAAGTTGGTTTA+TGG 0.152750 1.2:+49247640 MS.gene056152:CDS
AGATGGAAATACCAATAAAA+TGG 0.189014 1.2:+49248582 MS.gene056152:CDS
GCATAAACCTCATCTGTTTC+AGG 0.203134 1.2:-49246852 None:intergenic
CCCTCCTCTTCAGAACATTT+TGG 0.208126 1.2:+49247079 MS.gene056152:CDS
TGAGAAAGGTGAAAGGTTTA+TGG 0.219953 1.2:-49248122 None:intergenic
CGAAGAAACGGAAGCAAGTT+TGG 0.233645 1.2:+49248699 MS.gene056152:CDS
TAAGCTTAAGCTTGTTCCTT+TGG 0.291537 1.2:+49246875 MS.gene056152:CDS
TGGTTTATGGGAATTGTATC+TGG 0.292586 1.2:+49247653 MS.gene056152:CDS
GAAACGATGGCACTGAAATT+TGG 0.305036 1.2:-49248198 None:intergenic
GGACAATTCATGAAGTTAAC+AGG 0.315804 1.2:-49246774 None:intergenic
TCGTTTCCTAGTAACCTTCT+AGG 0.317283 1.2:+49248214 MS.gene056152:CDS
AGTTCAGGCAGGTCTATTTC+CGG 0.319570 1.2:+49248342 MS.gene056152:CDS
TTCACCTTGGAGGCTTCTTC+AGG 0.328238 1.2:+49247709 MS.gene056152:CDS
AAGCTTAAGCTTGTTCCTTT+GGG 0.328422 1.2:+49246876 MS.gene056152:CDS
AGAAGCCTCCAAGGTGAATT+AGG 0.335922 1.2:-49247704 None:intergenic
CTTGTTCCTTTGGGTGGAAA+TGG 0.343258 1.2:+49246885 MS.gene056152:CDS
ATGCAGATTCGATGGTGTTC+TGG 0.343933 1.2:+49247581 MS.gene056152:CDS
ACAATTGACCTTTCTTTACT+TGG 0.344982 1.2:+49248772 MS.gene056152:CDS
GACAATCTCAATTTCTTCCT+TGG 0.347743 1.2:-49248148 None:intergenic
ACCGCTTGAAGGACCGCTTC+TGG 0.350997 1.2:-49247461 None:intergenic
TCTCGAATAAGTTGGTTTAT+GGG 0.357035 1.2:+49247641 MS.gene056152:CDS
AATGTCTTTGCAAATGAAAC+AGG 0.359372 1.2:-49246966 None:intergenic
ATGGCGAGACGTGGAAGTTT+AGG 0.367612 1.2:+49247114 MS.gene056152:CDS
CATGCCAGCAGGAGTACTTT+CGG 0.368965 1.2:-49248263 None:intergenic
TCATTATGGTCTTCCGATAT+CGG 0.371359 1.2:+49248303 MS.gene056152:CDS
CATGAGGATCCATTACCATT+AGG 0.376847 1.2:+49247302 MS.gene056152:CDS
CTCTCACTAGAGGAGCGTTT+TGG 0.379568 1.2:-49248652 None:intergenic
CTGGCTCCCTGCATGCCAGC+AGG 0.380532 1.2:-49248274 None:intergenic
TTCTTCCTTGGTTGTGAGAA+AGG 0.380986 1.2:-49248136 None:intergenic
CGCGGTTATCCTTATACCAT+TGG 0.383301 1.2:-49248678 None:intergenic
TGAGAGTTTCCAATGGTATA+AGG 0.391430 1.2:+49248669 MS.gene056152:CDS
CCGCTAAAGTTACCGCTTGA+AGG 0.392870 1.2:-49247472 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.396598 1.2:+49248275 MS.gene056152:CDS
AACTTGCTTCCGTTTCTTCG+CGG 0.399377 1.2:-49248696 None:intergenic
AGTTTGTTGATCCCCTTCTC+TGG 0.400220 1.2:+49247681 MS.gene056152:CDS
AACTCAGGCGCGAATATGAC+TGG 0.403386 1.2:+49247422 MS.gene056152:CDS
AATCACAAGAAGCTTCTTGC+CGG 0.403468 1.2:+49247197 MS.gene056152:CDS
GGAGCCAGGCATGCTCATTA+TGG 0.423939 1.2:+49248289 MS.gene056152:CDS
TTTCGGGTAGACAACGGAAT+AGG 0.433921 1.2:-49248246 None:intergenic
TGGTATTTCCATCTGATGAA+TGG 0.434165 1.2:-49248573 None:intergenic
GGCTAATAAGCAACCGTTTG+AGG 0.435944 1.2:+49247493 MS.gene056152:CDS
CCAACAGGATTCCACCCTAA+TGG 0.436228 1.2:-49247317 None:intergenic
AGAAAGCTGGCAGACATGTT+TGG 0.443426 1.2:+49248814 MS.gene056152:CDS
GTGCTCTACCGTGATATATC+TGG 0.445579 1.2:+49248865 MS.gene056152:CDS
GGAATCAAAGGTGAAACCTT+TGG 0.447087 1.2:-49246795 None:intergenic
TACACAGAATGAGAATCAAA+TGG 0.448127 1.2:+49247364 MS.gene056152:CDS
ATGAGGATCCATTACCATTA+GGG 0.450034 1.2:+49247303 MS.gene056152:CDS
TCTGGCCTAATTCACCTTGG+AGG 0.451766 1.2:+49247699 MS.gene056152:CDS
TCTCCACCTCAGTAAAGTTC+AGG 0.453129 1.2:+49248327 MS.gene056152:CDS
ACACAGAATGAGAATCAAAT+GGG 0.454771 1.2:+49247365 MS.gene056152:CDS
TAAGGATAACCGCGAAGAAA+CGG 0.457301 1.2:+49248687 MS.gene056152:CDS
ATGATCAAAAGGCACGAAAC+CGG 0.458029 1.2:-49248365 None:intergenic
GTCATTAGAGATTTGTTGCT+CGG 0.460103 1.2:-49248551 None:intergenic
GTTTGTGATTCTTACCTGAA+TGG 0.461365 1.2:-49248913 None:intergenic
GATGGAAATACCAATAAAAT+GGG 0.463679 1.2:+49248583 MS.gene056152:CDS
CTGAGGTGGAGATCCGATAT+CGG 0.464440 1.2:-49248316 None:intergenic
ATGCCAGCAGGAGTACTTTC+GGG 0.465859 1.2:-49248262 None:intergenic
TGGGATTCGACGAGCGAAGA+AGG 0.469310 1.2:+49247265 MS.gene056152:CDS
CACTGAAATTTGGCCGTCGA+GGG 0.472008 1.2:-49248188 None:intergenic
ATAGGTTGCTCTGACCTAGA+AGG 0.479580 1.2:-49248228 None:intergenic
TGCATTGCCGCCTCTACTAA+AGG 0.482510 1.2:-49247563 None:intergenic
CAACTATGGCATGCTTGTGC+AGG 0.483052 1.2:+49246675 MS.gene056152:CDS
GGATTCCACCCTAATGGTAA+TGG 0.485472 1.2:-49247311 None:intergenic
ATCACAAGAAGCTTCTTGCC+GGG 0.486243 1.2:+49247198 MS.gene056152:CDS
AAGTACTCCTGCTGGCATGC+AGG 0.486614 1.2:+49248267 MS.gene056152:CDS
AAAATGGTGATCTTTGTGTT+GGG 0.488407 1.2:+49247246 MS.gene056152:CDS
TTAATAGATAAAACTTTGCA+TGG 0.488914 1.2:-49246816 None:intergenic
AGACGAATCCTCGGTTTCAA+AGG 0.490672 1.2:-49247621 None:intergenic
CGACGAGCGAAGAAGGGTAT+TGG 0.491306 1.2:+49247272 MS.gene056152:CDS
TTCTCTGGCCTAATTCACCT+TGG 0.492130 1.2:+49247696 MS.gene056152:CDS
CCTTTGGGTGGAAATGGTAA+TGG 0.496376 1.2:+49246891 MS.gene056152:CDS
AAAACTTTGCATGGAATCAA+AGG 0.504526 1.2:-49246807 None:intergenic
CTTAAGCTTGTTCCTTTGGG+TGG 0.509650 1.2:+49246879 MS.gene056152:CDS
ATTTACTGCAAAATGTAAGA+AGG 0.509927 1.2:+49248059 MS.gene056152:CDS
AGTTTAGCAGCATGATCAAA+AGG 0.510146 1.2:-49248376 None:intergenic
CTCTGACCTAGAAGGTTACT+AGG 0.513995 1.2:-49248220 None:intergenic
AAGTTTAGGCATATTTATAG+AGG 0.517507 1.2:+49247128 MS.gene056152:CDS
TGTCTCTTGCTTACTATCCA+TGG 0.518182 1.2:+49248450 MS.gene056152:CDS
CCATTAGGGTGGAATCCTGT+TGG 0.519653 1.2:+49247317 MS.gene056152:CDS
GGAAGCAAGTTTGGAGAGTA+CGG 0.521728 1.2:+49248708 MS.gene056152:CDS
TGACTGGGAGGGAAAAGGTT+AGG 0.521859 1.2:+49247438 MS.gene056152:CDS
TAAACTTTACTGTTCACTGT+TGG 0.522539 1.2:-49246714 None:intergenic
TGATGAACTGTACAGAAAGC+TGG 0.523736 1.2:+49248801 MS.gene056152:CDS
GGTGTTTAGATCCTCAACTA+TGG 0.524660 1.2:+49246661 MS.gene056152:CDS
GGGTAGTAAATAACCTCAAA+CGG 0.525195 1.2:-49247506 None:intergenic
CATAAGATCCAAGTAAAGAA+AGG 0.525657 1.2:-49248780 None:intergenic
ACGAGGAGTTCCCGAACCAT+CGG 0.527122 1.2:-49248614 None:intergenic
GCCAAAATGTTCTGAAGAGG+AGG 0.527805 1.2:-49247080 None:intergenic
TTCTGTGTAAACCAAGGAAG+AGG 0.532226 1.2:-49247350 None:intergenic
GAATATGACTGGGAGGGAAA+AGG 0.532595 1.2:+49247433 MS.gene056152:CDS
ATGTAAGAAGGGTGAGTCCA+TGG 0.533350 1.2:+49248071 MS.gene056152:CDS
AGGATTCGTCTCGAATAAGT+TGG 0.533362 1.2:+49247633 MS.gene056152:CDS
GAAAATGGTGATCTTTGTGT+TGG 0.533797 1.2:+49247245 MS.gene056152:CDS
ACATTGGAGAGGAACCATTC+AGG 0.535436 1.2:+49248899 MS.gene056152:CDS
TCTAATGACCATTCATCAGA+TGG 0.537635 1.2:+49248565 MS.gene056152:CDS
AGTACTCCTGCTGGCATGCA+GGG 0.540145 1.2:+49248268 MS.gene056152:CDS
AAGACCATAATGAGCATGCC+TGG 0.540953 1.2:-49248293 None:intergenic
GCATGCTTGTGCAGGTGGAA+TGG 0.542227 1.2:+49246683 MS.gene056152:CDS
CCTTCAAGCGGTAACTTTAG+CGG 0.549169 1.2:+49247472 MS.gene056152:CDS
GCGAAGAAGGGTATTGGTGG+TGG 0.550842 1.2:+49247278 MS.gene056152:CDS
GGGATTCGACGAGCGAAGAA+GGG 0.551807 1.2:+49247266 MS.gene056152:CDS
AAAGTTTATTACTTTCCTCA+AGG 0.553230 1.2:+49246729 MS.gene056152:CDS
CTATGGCATGCTTGTGCAGG+TGG 0.553241 1.2:+49246678 MS.gene056152:CDS
CTACCCGAAAGTACTCCTGC+TGG 0.554091 1.2:+49248259 MS.gene056152:CDS
TGTGAAGGCGCCTTTAGTAG+AGG 0.555008 1.2:+49247553 MS.gene056152:CDS
AAGGTGAATTAGGCCAGAGA+AGG 0.557096 1.2:-49247694 None:intergenic
TAACTTCATGAATTGTCCAA+AGG 0.561840 1.2:+49246779 MS.gene056152:CDS
AATAACAATGGTTTGAACTC+AGG 0.561882 1.2:+49247407 MS.gene056152:CDS
AACTCTGGCGTACTTGCGCG+AGG 0.565767 1.2:-49247527 None:intergenic
TTTACTGCAAAATGTAAGAA+GGG 0.567494 1.2:+49248060 MS.gene056152:CDS
TTAGCCAAAATGTTCTGAAG+AGG 0.569408 1.2:-49247083 None:intergenic
GCACTGAAATTTGGCCGTCG+AGG 0.570322 1.2:-49248189 None:intergenic
CCATTACCATTTCCACCCAA+AGG 0.573446 1.2:-49246891 None:intergenic
CAAGATGGCCTTTGAAACCG+AGG 0.577088 1.2:+49247613 MS.gene056152:CDS
CGAGCGAAGAAGGGTATTGG+TGG 0.577713 1.2:+49247275 MS.gene056152:CDS
GCTACTAATTCAACCAACCA+TGG 0.579195 1.2:-49248088 None:intergenic
ATTCATCAGAAGAAGTTGAA+AGG 0.580416 1.2:+49246640 MS.gene056152:CDS
AGGTGAATTAGGCCAGAGAA+GGG 0.583510 1.2:-49247693 None:intergenic
ATTAACAACAACAATAACAA+TGG 0.588569 1.2:+49247395 MS.gene056152:CDS
CACCTCAGTAAAGTTCAGGC+AGG 0.589149 1.2:+49248331 MS.gene056152:CDS
CTGCCTGAACTTTACTGAGG+TGG 0.589800 1.2:-49248330 None:intergenic
AAAGGTGAAAGGTTTATGGA+TGG 0.590026 1.2:-49248118 None:intergenic
CTGAAATTTGGCCGTCGAGG+GGG 0.590791 1.2:-49248186 None:intergenic
TCAAAAGGCACGAAACCGGC+CGG 0.591651 1.2:-49248361 None:intergenic
GGCGCCTTCACACAAAACTC+TGG 0.592521 1.2:-49247542 None:intergenic
CAGGCAGGTCTATTTCCGGC+CGG 0.592530 1.2:+49248346 MS.gene056152:CDS
GTAGTCAAAAGATGCCGCCT+CGG 0.596640 1.2:-49247155 None:intergenic
AAGATGTTCATGGCGAGACG+TGG 0.596686 1.2:+49247105 MS.gene056152:CDS
AGGCGGCAATGCAGATTCGA+TGG 0.597819 1.2:+49247573 MS.gene056152:CDS
TCTGATGCTAACAATGGTGG+AGG 0.600675 1.2:+49246996 MS.gene056152:CDS
GTTACCTGAAGAAGCCTCCA+AGG 0.601497 1.2:-49247713 None:intergenic
GCTGCAGATTATGACACTGT+TGG 0.602356 1.2:+49246921 MS.gene056152:CDS
TTCTGGAATAAGATTCAAGA+TGG 0.603114 1.2:+49247598 MS.gene056152:CDS
GGGTATTGGTGGTGGACATG+AGG 0.604425 1.2:+49247286 MS.gene056152:CDS
TTCTCATTCTGTGTAAACCA+AGG 0.607875 1.2:-49247356 None:intergenic
GCAGATTATGACACTGTTGG+AGG 0.608851 1.2:+49246924 MS.gene056152:CDS
TGGCCGAAAAGAACAAGCTG+AGG 0.609518 1.2:-49248517 None:intergenic
TTGGTTGTGAGAAAGGTGAA+AGG 0.610407 1.2:-49248129 None:intergenic
CAATCTGATGCTAACAATGG+TGG 0.611120 1.2:+49246993 MS.gene056152:CDS
GCATGTTCAGCATGACCTTG+AGG 0.617891 1.2:-49246744 None:intergenic
TCACAAGAAGCTTCTTGCCG+GGG 0.620934 1.2:+49247199 MS.gene056152:CDS
TCTGGAGCAGTCAAACACAT+TGG 0.623032 1.2:+49248883 MS.gene056152:CDS
ACTTATTCGAGACGAATCCT+CGG 0.623357 1.2:-49247630 None:intergenic
AATGTTCTGAAGAGGAGGGT+CGG 0.624657 1.2:-49247075 None:intergenic
AGACTGAGTAGAACTTGCCA+TGG 0.625027 1.2:-49248467 None:intergenic
GCACAAGCATGCCATAGTTG+AGG 0.626456 1.2:-49246672 None:intergenic
GGTAAGACTTGTTGATGACG+AGG 0.626525 1.2:-49248631 None:intergenic
ACTGAAATTTGGCCGTCGAG+GGG 0.629416 1.2:-49248187 None:intergenic
TTTCCCTCGTTTGGATTACG+CGG 0.631927 1.2:+49247052 MS.gene056152:CDS
AGGATCCATTACCATTAGGG+TGG 0.632365 1.2:+49247306 MS.gene056152:CDS
GCCAGAAGCGGTCCTTCAAG+CGG 0.635688 1.2:+49247460 MS.gene056152:CDS
TTTCTCGAATCAGAAGATGT+CGG 0.638567 1.2:+49248745 MS.gene056152:CDS
GGCTGATCCTGAAACAGATG+AGG 0.642209 1.2:+49246845 MS.gene056152:CDS
TCGAATCAGAAGATGTCGGT+CGG 0.645828 1.2:+49248749 MS.gene056152:CDS
ACTCAGGCGCGAATATGACT+GGG 0.647010 1.2:+49247423 MS.gene056152:CDS
AGGCGCGAATATGACTGGGA+GGG 0.648683 1.2:+49247427 MS.gene056152:CDS
TTTCACCTTTCTCACAACCA+AGG 0.649147 1.2:+49248131 MS.gene056152:CDS
GGAAAAGGTTAGGCCAGAAG+CGG 0.650274 1.2:+49247448 MS.gene056152:CDS
TGACTGCTCCAGATATATCA+CGG 0.657225 1.2:-49248873 None:intergenic
CCAAAATGTTCTGAAGAGGA+GGG 0.662547 1.2:-49247079 None:intergenic
ATCGTCTCAGCACAATACCT+AGG 0.664599 1.2:-49247029 None:intergenic
CCATTGGAAACTCTCACTAG+AGG 0.665637 1.2:-49248662 None:intergenic
CCTCTAGTGAGAGTTTCCAA+TGG 0.667381 1.2:+49248662 MS.gene056152:CDS
ACTCAATCTGATGCTAACAA+TGG 0.675509 1.2:+49246990 MS.gene056152:CDS
ACTCTGGCGTACTTGCGCGA+GGG 0.681238 1.2:-49247526 None:intergenic
AAGAAGGGTGAGTCCATGGT+TGG 0.682554 1.2:+49248075 MS.gene056152:CDS
CAGGCGCGAATATGACTGGG+AGG 0.684044 1.2:+49247426 MS.gene056152:CDS
GAGTACTTTCGGGTAGACAA+CGG 0.687017 1.2:-49248252 None:intergenic
ATTAGGTTATTAGAGACACT+AGG 0.687638 1.2:-49248400 None:intergenic
GGTGAATTAGGCCAGAGAAG+GGG 0.693414 1.2:-49247692 None:intergenic
AGCAGTCAAACACATTGGAG+AGG 0.695616 1.2:+49248888 MS.gene056152:CDS
CGGCCGCGTAATCCAAACGA+GGG 0.702235 1.2:-49247055 None:intergenic
AGAAGGTTACTAGGAAACGA+TGG 0.704217 1.2:-49248211 None:intergenic
GAAGGCGCCTTTAGTAGAGG+CGG 0.708805 1.2:+49247556 MS.gene056152:CDS
CACAGAATGAGAATCAAATG+GGG 0.710437 1.2:+49247366 MS.gene056152:CDS
GGTCATGCTGAACATGCATG+TGG 0.714823 1.2:+49246750 MS.gene056152:CDS
TTTATAGAGGAACACCGAGG+CGG 0.715637 1.2:+49247141 MS.gene056152:CDS
GACCTGCCTGAACTTTACTG+AGG 0.725533 1.2:-49248333 None:intergenic
TCGGCCGCGTAATCCAAACG+AGG 0.730598 1.2:-49247056 None:intergenic
ATATTTATAGAGGAACACCG+AGG 0.862150 1.2:+49247138 MS.gene056152:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTAATAAAATA+TGG - chr1.2:49247740-49247759 None:intergenic 10.0%
!! AATTGCATAATACTTAAATA+TGG + chr1.2:49247777-49247796 MS.gene056152:intron 15.0%
!!! AGTTTTATCTATTAAGTATA+TGG + chr1.2:49246824-49246843 MS.gene056152:CDS 15.0%
!! ATTAACAACAACAATAACAA+TGG + chr1.2:49247395-49247414 MS.gene056152:CDS 20.0%
!! TCATTAATTTAGTAATCAAG+TGG - chr1.2:49247875-49247894 None:intergenic 20.0%
!! TTAATAGATAAAACTTTGCA+TGG - chr1.2:49246819-49246838 None:intergenic 20.0%
!! TTTGTATGATTTCATTTGAT+AGG + chr1.2:49247958-49247977 MS.gene056152:intron 20.0%
!!! ATGATATTTTGTAGGTTAAA+TGG + chr1.2:49248026-49248045 MS.gene056152:intron 20.0%
!!! GTAGTATTATGATATTTTGT+AGG + chr1.2:49248018-49248037 MS.gene056152:intron 20.0%
!!! TGATATTTTGTAGGTTAAAT+GGG + chr1.2:49248027-49248046 MS.gene056152:intron 20.0%
! AAAGTTTATTACTTTCCTCA+AGG + chr1.2:49246729-49246748 MS.gene056152:CDS 25.0%
! AAGTTTAGGCATATTTATAG+AGG + chr1.2:49247128-49247147 MS.gene056152:CDS 25.0%
! AGATGGAAATACCAATAAAA+TGG + chr1.2:49248582-49248601 MS.gene056152:CDS 25.0%
! ATTTACTGCAAAATGTAAGA+AGG + chr1.2:49248059-49248078 MS.gene056152:CDS 25.0%
! ATTTCATTTGATAGGATCAT+AGG + chr1.2:49247966-49247985 MS.gene056152:intron 25.0%
! GATGGAAATACCAATAAAAT+GGG + chr1.2:49248583-49248602 MS.gene056152:CDS 25.0%
! TTTACTGCAAAATGTAAGAA+GGG + chr1.2:49248060-49248079 MS.gene056152:CDS 25.0%
!! GGAAAAATTACCCATTTTAT+TGG - chr1.2:49248596-49248615 None:intergenic 25.0%
AAAACTTTGCATGGAATCAA+AGG - chr1.2:49246810-49246829 None:intergenic 30.0%
AAAATGGTGATCTTTGTGTT+GGG + chr1.2:49247246-49247265 MS.gene056152:CDS 30.0%
AATAACAATGGTTTGAACTC+AGG + chr1.2:49247407-49247426 MS.gene056152:CDS 30.0%
AATGTCTTTGCAAATGAAAC+AGG - chr1.2:49246969-49246988 None:intergenic 30.0%
ACAATTGACCTTTCTTTACT+TGG + chr1.2:49248772-49248791 MS.gene056152:CDS 30.0%
ACACAGAATGAGAATCAAAT+GGG + chr1.2:49247365-49247384 MS.gene056152:CDS 30.0%
ATTAGGTTATTAGAGACACT+AGG - chr1.2:49248403-49248422 None:intergenic 30.0%
ATTCATCAGAAGAAGTTGAA+AGG + chr1.2:49246640-49246659 MS.gene056152:CDS 30.0%
CATAAGATCCAAGTAAAGAA+AGG - chr1.2:49248783-49248802 None:intergenic 30.0%
GAAATCATACAAAACTCAAC+TGG - chr1.2:49247951-49247970 None:intergenic 30.0%
TAAACTTTACTGTTCACTGT+TGG - chr1.2:49246717-49246736 None:intergenic 30.0%
TAACTTCATGAATTGTCCAA+AGG + chr1.2:49246779-49246798 MS.gene056152:CDS 30.0%
TACACAGAATGAGAATCAAA+TGG + chr1.2:49247364-49247383 MS.gene056152:CDS 30.0%
TGGCATAGAAAAATATGAGA+AGG + chr1.2:49248834-49248853 MS.gene056152:CDS 30.0%
! AAAATGGGTAATTTTTCCGA+TGG + chr1.2:49248598-49248617 MS.gene056152:CDS 30.0%
! AACAGAAGCACATTCTTAAA+TGG - chr1.2:49247919-49247938 None:intergenic 30.0%
! CTTACATTTTGCAGTAAATC+TGG - chr1.2:49248058-49248077 None:intergenic 30.0%
! TGCTAGATTTTTGCATCATT+AGG - chr1.2:49248420-49248439 None:intergenic 30.0%
!! TCTCGAATAAGTTGGTTTAT+GGG + chr1.2:49247641-49247660 MS.gene056152:CDS 30.0%
!! TTCTGGAATAAGATTCAAGA+TGG + chr1.2:49247598-49247617 MS.gene056152:CDS 30.0%
!!! ATTTTGGCTAAAGATGTTCA+TGG + chr1.2:49247095-49247114 MS.gene056152:CDS 30.0%
AAAGGTGAAAGGTTTATGGA+TGG - chr1.2:49248121-49248140 None:intergenic 35.0%
ACTCAATCTGATGCTAACAA+TGG + chr1.2:49246990-49247009 MS.gene056152:CDS 35.0%
AGTTTAGCAGCATGATCAAA+AGG - chr1.2:49248379-49248398 None:intergenic 35.0%
ATATTTATAGAGGAACACCG+AGG + chr1.2:49247138-49247157 MS.gene056152:CDS 35.0%
ATGAGGATCCATTACCATTA+GGG + chr1.2:49247303-49247322 MS.gene056152:CDS 35.0%
CACAGAATGAGAATCAAATG+GGG + chr1.2:49247366-49247385 MS.gene056152:CDS 35.0%
GAAAATGGTGATCTTTGTGT+TGG + chr1.2:49247245-49247264 MS.gene056152:CDS 35.0%
GACAATCTCAATTTCTTCCT+TGG - chr1.2:49248151-49248170 None:intergenic 35.0%
GGACAATTCATGAAGTTAAC+AGG - chr1.2:49246777-49246796 None:intergenic 35.0%
GGGTAGTAAATAACCTCAAA+CGG - chr1.2:49247509-49247528 None:intergenic 35.0%
TCATTATGGTCTTCCGATAT+CGG + chr1.2:49248303-49248322 MS.gene056152:CDS 35.0%
TCTAATGACCATTCATCAGA+TGG + chr1.2:49248565-49248584 MS.gene056152:CDS 35.0%
TGAGAAAGGTGAAAGGTTTA+TGG - chr1.2:49248125-49248144 None:intergenic 35.0%
TGAGAGTTTCCAATGGTATA+AGG + chr1.2:49248669-49248688 MS.gene056152:CDS 35.0%
TGGTATTTCCATCTGATGAA+TGG - chr1.2:49248576-49248595 None:intergenic 35.0%
TGGTTTATGGGAATTGTATC+TGG + chr1.2:49247653-49247672 MS.gene056152:CDS 35.0%
TTCTCATTCTGTGTAAACCA+AGG - chr1.2:49247359-49247378 None:intergenic 35.0%
TTTCTCGAATCAGAAGATGT+CGG + chr1.2:49248745-49248764 MS.gene056152:CDS 35.0%
! AAGCTTAAGCTTGTTCCTTT+GGG + chr1.2:49246876-49246895 MS.gene056152:CDS 35.0%
! AGAGGAAAATTTTCTCCAAC+AGG - chr1.2:49247335-49247354 None:intergenic 35.0%
! GAGAAAATTTTCCTCTTCCT+TGG + chr1.2:49247339-49247358 MS.gene056152:CDS 35.0%
! TAAGCTTAAGCTTGTTCCTT+TGG + chr1.2:49246875-49246894 MS.gene056152:CDS 35.0%
!! AAACCTCAGCTTGTTCTTTT+CGG + chr1.2:49248514-49248533 MS.gene056152:CDS 35.0%
!! GTCATTAGAGATTTGTTGCT+CGG - chr1.2:49248554-49248573 None:intergenic 35.0%
!! GTCTCGAATAAGTTGGTTTA+TGG + chr1.2:49247640-49247659 MS.gene056152:CDS 35.0%
!! TTAGCCAAAATGTTCTGAAG+AGG - chr1.2:49247086-49247105 None:intergenic 35.0%
!! TTCGATTGTGTTTTTGAGAG+CGG + chr1.2:49247223-49247242 MS.gene056152:CDS 35.0%
AATCACAAGAAGCTTCTTGC+CGG + chr1.2:49247197-49247216 MS.gene056152:CDS 40.0%
ACTTATTCGAGACGAATCCT+CGG - chr1.2:49247633-49247652 None:intergenic 40.0%
AGAAGGTTACTAGGAAACGA+TGG - chr1.2:49248214-49248233 None:intergenic 40.0%
AGGATTCGTCTCGAATAAGT+TGG + chr1.2:49247633-49247652 MS.gene056152:CDS 40.0%
CAAAAACACAATCGAATCCC+CGG - chr1.2:49247219-49247238 None:intergenic 40.0%
CAATCTGATGCTAACAATGG+TGG + chr1.2:49246993-49247012 MS.gene056152:CDS 40.0%
CATGAGGATCCATTACCATT+AGG + chr1.2:49247302-49247321 MS.gene056152:CDS 40.0%
GCATAAACCTCATCTGTTTC+AGG - chr1.2:49246855-49246874 None:intergenic 40.0%
GCTACTAATTCAACCAACCA+TGG - chr1.2:49248091-49248110 None:intergenic 40.0%
GGAATCAAAGGTGAAACCTT+TGG - chr1.2:49246798-49246817 None:intergenic 40.0%
GGTGTTTAGATCCTCAACTA+TGG + chr1.2:49246661-49246680 MS.gene056152:CDS 40.0%
TAAGGATAACCGCGAAGAAA+CGG + chr1.2:49248687-49248706 MS.gene056152:CDS 40.0%
TCGTTTCCTAGTAACCTTCT+AGG + chr1.2:49248214-49248233 MS.gene056152:CDS 40.0%
TGACTGCTCCAGATATATCA+CGG - chr1.2:49248876-49248895 None:intergenic 40.0%
TGATGAACTGTACAGAAAGC+TGG + chr1.2:49248801-49248820 MS.gene056152:CDS 40.0%
TGTCTCTTGCTTACTATCCA+TGG + chr1.2:49248450-49248469 MS.gene056152:CDS 40.0%
TTCTGTGTAAACCAAGGAAG+AGG - chr1.2:49247353-49247372 None:intergenic 40.0%
TTCTTCCTTGGTTGTGAGAA+AGG - chr1.2:49248139-49248158 None:intergenic 40.0%
TTGGTTGTGAGAAAGGTGAA+AGG - chr1.2:49248132-49248151 None:intergenic 40.0%
TTTCACCTTTCTCACAACCA+AGG + chr1.2:49248131-49248150 MS.gene056152:CDS 40.0%
! ATGATCAAAAGGCACGAAAC+CGG - chr1.2:49248368-49248387 None:intergenic 40.0%
! GAAACGATGGCACTGAAATT+TGG - chr1.2:49248201-49248220 None:intergenic 40.0%
! GGGTAATTTTTCCGATGGTT+CGG + chr1.2:49248603-49248622 MS.gene056152:CDS 40.0%
! GGTAATTTTTCCGATGGTTC+GGG + chr1.2:49248604-49248623 MS.gene056152:CDS 40.0%
!! CCAAAATGTTCTGAAGAGGA+GGG - chr1.2:49247082-49247101 None:intergenic 40.0%
!! GTGTTTTTGAGAGCGGAAAA+TGG + chr1.2:49247230-49247249 MS.gene056152:CDS 40.0%
!!! GTTGCTCGGTGAGAATTTTT+TGG - chr1.2:49248540-49248559 None:intergenic 40.0%
AAGACCATAATGAGCATGCC+TGG - chr1.2:49248296-49248315 None:intergenic 45.0%
AAGGTGAATTAGGCCAGAGA+AGG - chr1.2:49247697-49247716 None:intergenic 45.0%
AGAAAGCTGGCAGACATGTT+TGG + chr1.2:49248814-49248833 MS.gene056152:CDS 45.0%
AGAAGCCTCCAAGGTGAATT+AGG - chr1.2:49247707-49247726 None:intergenic 45.0%
AGACGAATCCTCGGTTTCAA+AGG - chr1.2:49247624-49247643 None:intergenic 45.0%
AGACTGAGTAGAACTTGCCA+TGG - chr1.2:49248470-49248489 None:intergenic 45.0%
AGCAGTCAAACACATTGGAG+AGG + chr1.2:49248888-49248907 MS.gene056152:CDS 45.0%
AGGATCCATTACCATTAGGG+TGG + chr1.2:49247306-49247325 MS.gene056152:CDS 45.0%
AGGTGAATTAGGCCAGAGAA+GGG - chr1.2:49247696-49247715 None:intergenic 45.0%
AGTTCAGGCAGGTCTATTTC+CGG + chr1.2:49248342-49248361 MS.gene056152:CDS 45.0%
ATAGGTTGCTCTGACCTAGA+AGG - chr1.2:49248231-49248250 None:intergenic 45.0%
ATCACAAGAAGCTTCTTGCC+GGG + chr1.2:49247198-49247217 MS.gene056152:CDS 45.0%
ATCGTCTCAGCACAATACCT+AGG - chr1.2:49247032-49247051 None:intergenic 45.0%
ATGCAGATTCGATGGTGTTC+TGG + chr1.2:49247581-49247600 MS.gene056152:CDS 45.0%
ATGTAAGAAGGGTGAGTCCA+TGG + chr1.2:49248071-49248090 MS.gene056152:CDS 45.0%
CCATTACCATTTCCACCCAA+AGG - chr1.2:49246894-49246913 None:intergenic 45.0%
CCATTGGAAACTCTCACTAG+AGG - chr1.2:49248665-49248684 None:intergenic 45.0%
CCTCTAGTGAGAGTTTCCAA+TGG + chr1.2:49248662-49248681 MS.gene056152:CDS 45.0%
CCTTCAAGCGGTAACTTTAG+CGG + chr1.2:49247472-49247491 MS.gene056152:CDS 45.0%
CCTTTGGGTGGAAATGGTAA+TGG + chr1.2:49246891-49246910 MS.gene056152:CDS 45.0%
CGAAGAAACGGAAGCAAGTT+TGG + chr1.2:49248699-49248718 MS.gene056152:CDS 45.0%
CGCGGTTATCCTTATACCAT+TGG - chr1.2:49248681-49248700 None:intergenic 45.0%
CTCTGACCTAGAAGGTTACT+AGG - chr1.2:49248223-49248242 None:intergenic 45.0%
CTTGTTCCTTTGGGTGGAAA+TGG + chr1.2:49246885-49246904 MS.gene056152:CDS 45.0%
GAATATGACTGGGAGGGAAA+AGG + chr1.2:49247433-49247452 MS.gene056152:CDS 45.0%
GCAGATTATGACACTGTTGG+AGG + chr1.2:49246924-49246943 MS.gene056152:CDS 45.0%
GCTGCAGATTATGACACTGT+TGG + chr1.2:49246921-49246940 MS.gene056152:CDS 45.0%
GGAAGCAAGTTTGGAGAGTA+CGG + chr1.2:49248708-49248727 MS.gene056152:CDS 45.0%
GGATTCCACCCTAATGGTAA+TGG - chr1.2:49247314-49247333 None:intergenic 45.0%
GGCTAATAAGCAACCGTTTG+AGG + chr1.2:49247493-49247512 MS.gene056152:CDS 45.0%
GTGCTCTACCGTGATATATC+TGG + chr1.2:49248865-49248884 MS.gene056152:CDS 45.0%
TCGAATCAGAAGATGTCGGT+CGG + chr1.2:49248749-49248768 MS.gene056152:CDS 45.0%
TCTCCACCTCAGTAAAGTTC+AGG + chr1.2:49248327-49248346 MS.gene056152:CDS 45.0%
TCTGATGCTAACAATGGTGG+AGG + chr1.2:49246996-49247015 MS.gene056152:CDS 45.0%
TTCTCTGGCCTAATTCACCT+TGG + chr1.2:49247696-49247715 MS.gene056152:CDS 45.0%
TTTATAGAGGAACACCGAGG+CGG + chr1.2:49247141-49247160 MS.gene056152:CDS 45.0%
TTTCCCTCGTTTGGATTACG+CGG + chr1.2:49247052-49247071 MS.gene056152:CDS 45.0%
! AACTTGCTTCCGTTTCTTCG+CGG - chr1.2:49248699-49248718 None:intergenic 45.0%
! CCCTCCTCTTCAGAACATTT+TGG + chr1.2:49247079-49247098 MS.gene056152:CDS 45.0%
! CTTAAGCTTGTTCCTTTGGG+TGG + chr1.2:49246879-49246898 MS.gene056152:CDS 45.0%
! GAGTACTTTCGGGTAGACAA+CGG - chr1.2:49248255-49248274 None:intergenic 45.0%
! GTGGAGGTTTTTCTGTTCCT+AGG + chr1.2:49247012-49247031 MS.gene056152:CDS 45.0%
! TCTGGAGCAGTCAAACACAT+TGG + chr1.2:49248883-49248902 MS.gene056152:CDS 45.0%
! TGAGACGATTTTCCCTCGTT+TGG + chr1.2:49247043-49247062 MS.gene056152:CDS 45.0%
! TTTCGGGTAGACAACGGAAT+AGG - chr1.2:49248249-49248268 None:intergenic 45.0%
!! AATGTTCTGAAGAGGAGGGT+CGG - chr1.2:49247078-49247097 None:intergenic 45.0%
!! AGTTTGTTGATCCCCTTCTC+TGG + chr1.2:49247681-49247700 MS.gene056152:CDS 45.0%
!! GCCAAAATGTTCTGAAGAGG+AGG - chr1.2:49247083-49247102 None:intergenic 45.0%
!! GGCATCTTTTGACTACTGGT+TGG + chr1.2:49247162-49247181 MS.gene056152:CDS 45.0%
!! GGTAAGACTTGTTGATGACG+AGG - chr1.2:49248634-49248653 None:intergenic 45.0%
!! TACGCCAGAGTTTTGTGTGA+AGG + chr1.2:49247538-49247557 MS.gene056152:CDS 45.0%
AACTCAGGCGCGAATATGAC+TGG + chr1.2:49247422-49247441 MS.gene056152:CDS 50.0%
AAGAAGGGTGAGTCCATGGT+TGG + chr1.2:49248075-49248094 MS.gene056152:CDS 50.0%
AAGATGTTCATGGCGAGACG+TGG + chr1.2:49247105-49247124 MS.gene056152:CDS 50.0%
ACTCAGGCGCGAATATGACT+GGG + chr1.2:49247423-49247442 MS.gene056152:CDS 50.0%
ACTGAAATTTGGCCGTCGAG+GGG - chr1.2:49248190-49248209 None:intergenic 50.0%
ATGGCGAGACGTGGAAGTTT+AGG + chr1.2:49247114-49247133 MS.gene056152:CDS 50.0%
CAACTATGGCATGCTTGTGC+AGG + chr1.2:49246675-49246694 MS.gene056152:CDS 50.0%
CACCTCAGTAAAGTTCAGGC+AGG + chr1.2:49248331-49248350 MS.gene056152:CDS 50.0%
CACTGAAATTTGGCCGTCGA+GGG - chr1.2:49248191-49248210 None:intergenic 50.0%
CCAACAGGATTCCACCCTAA+TGG - chr1.2:49247320-49247339 None:intergenic 50.0%
CCATTAGGGTGGAATCCTGT+TGG + chr1.2:49247317-49247336 MS.gene056152:CDS 50.0%
CCGCTAAAGTTACCGCTTGA+AGG - chr1.2:49247475-49247494 None:intergenic 50.0%
CTGAGGTGGAGATCCGATAT+CGG - chr1.2:49248319-49248338 None:intergenic 50.0%
CTGCCTGAACTTTACTGAGG+TGG - chr1.2:49248333-49248352 None:intergenic 50.0%
GACCTGCCTGAACTTTACTG+AGG - chr1.2:49248336-49248355 None:intergenic 50.0%
GCACAAGCATGCCATAGTTG+AGG - chr1.2:49246675-49246694 None:intergenic 50.0%
GCATGTTCAGCATGACCTTG+AGG - chr1.2:49246747-49246766 None:intergenic 50.0%
GGAAAAGGTTAGGCCAGAAG+CGG + chr1.2:49247448-49247467 MS.gene056152:CDS 50.0%
GGCTGATCCTGAAACAGATG+AGG + chr1.2:49246845-49246864 MS.gene056152:CDS 50.0%
GGTCATGCTGAACATGCATG+TGG + chr1.2:49246750-49246769 MS.gene056152:CDS 50.0%
GGTGAATTAGGCCAGAGAAG+GGG - chr1.2:49247695-49247714 None:intergenic 50.0%
GTAGTCAAAAGATGCCGCCT+CGG - chr1.2:49247158-49247177 None:intergenic 50.0%
GTTACCTGAAGAAGCCTCCA+AGG - chr1.2:49247716-49247735 None:intergenic 50.0%
TCACAAGAAGCTTCTTGCCG+GGG + chr1.2:49247199-49247218 MS.gene056152:CDS 50.0%
TCTGGCCTAATTCACCTTGG+AGG + chr1.2:49247699-49247718 MS.gene056152:CDS 50.0%
TGACTGGGAGGGAAAAGGTT+AGG + chr1.2:49247438-49247457 MS.gene056152:CDS 50.0%
TGCATTGCCGCCTCTACTAA+AGG - chr1.2:49247566-49247585 None:intergenic 50.0%
TGGCCGAAAAGAACAAGCTG+AGG - chr1.2:49248520-49248539 None:intergenic 50.0%
TTCACCTTGGAGGCTTCTTC+AGG + chr1.2:49247709-49247728 MS.gene056152:CDS 50.0%
!! AGGCGGCATCTTTTGACTAC+TGG + chr1.2:49247158-49247177 MS.gene056152:CDS 50.0%
!! ATGCCAGCAGGAGTACTTTC+GGG - chr1.2:49248265-49248284 None:intergenic 50.0%
!! CAAGATGGCCTTTGAAACCG+AGG + chr1.2:49247613-49247632 MS.gene056152:CDS 50.0%
!! CATGCCAGCAGGAGTACTTT+CGG - chr1.2:49248266-49248285 None:intergenic 50.0%
!! TGTGAAGGCGCCTTTAGTAG+AGG + chr1.2:49247553-49247572 MS.gene056152:CDS 50.0%
!!! CTCTCACTAGAGGAGCGTTT+TGG - chr1.2:49248655-49248674 None:intergenic 50.0%
AAGTACTCCTGCTGGCATGC+AGG + chr1.2:49248267-49248286 MS.gene056152:CDS 55.0%
ACGAGGAGTTCCCGAACCAT+CGG - chr1.2:49248617-49248636 None:intergenic 55.0%
ACGCGTAATGCACAGTGCGA+AGG - chr1.2:49247839-49247858 None:intergenic 55.0%
AGGCGCGAATATGACTGGGA+GGG + chr1.2:49247427-49247446 MS.gene056152:CDS 55.0%
AGGCGGCAATGCAGATTCGA+TGG + chr1.2:49247573-49247592 MS.gene056152:CDS 55.0%
AGTACTCCTGCTGGCATGCA+GGG + chr1.2:49248268-49248287 MS.gene056152:CDS 55.0%
CTATGGCATGCTTGTGCAGG+TGG + chr1.2:49246678-49246697 MS.gene056152:CDS 55.0%
CTGAAATTTGGCCGTCGAGG+GGG - chr1.2:49248189-49248208 None:intergenic 55.0%
GCACTGAAATTTGGCCGTCG+AGG - chr1.2:49248192-49248211 None:intergenic 55.0%
GCATGCTTGTGCAGGTGGAA+TGG + chr1.2:49246683-49246702 MS.gene056152:CDS 55.0%
GGAGCCAGGCATGCTCATTA+TGG + chr1.2:49248289-49248308 MS.gene056152:CDS 55.0%
GGCGCCTTCACACAAAACTC+TGG - chr1.2:49247545-49247564 None:intergenic 55.0%
GGGATTCGACGAGCGAAGAA+GGG + chr1.2:49247266-49247285 MS.gene056152:CDS 55.0%
TGGGATTCGACGAGCGAAGA+AGG + chr1.2:49247265-49247284 MS.gene056152:CDS 55.0%
! CGACGAGCGAAGAAGGGTAT+TGG + chr1.2:49247272-49247291 MS.gene056152:CDS 55.0%
! TCAAAAGGCACGAAACCGGC+CGG - chr1.2:49248364-49248383 None:intergenic 55.0%
!! CGAGCGAAGAAGGGTATTGG+TGG + chr1.2:49247275-49247294 MS.gene056152:CDS 55.0%
!! CTACCCGAAAGTACTCCTGC+TGG + chr1.2:49248259-49248278 MS.gene056152:CDS 55.0%
!! GAAGGCGCCTTTAGTAGAGG+CGG + chr1.2:49247556-49247575 MS.gene056152:CDS 55.0%
!! GCGAAGAAGGGTATTGGTGG+TGG + chr1.2:49247278-49247297 MS.gene056152:CDS 55.0%
!! GGGTATTGGTGGTGGACATG+AGG + chr1.2:49247286-49247305 MS.gene056152:CDS 55.0%
AACTCTGGCGTACTTGCGCG+AGG - chr1.2:49247530-49247549 None:intergenic 60.0%
ACCGCTTGAAGGACCGCTTC+TGG - chr1.2:49247464-49247483 None:intergenic 60.0%
ACTCTGGCGTACTTGCGCGA+GGG - chr1.2:49247529-49247548 None:intergenic 60.0%
CACCACGATTTCCCCCTCGA+CGG + chr1.2:49248175-49248194 MS.gene056152:CDS 60.0%
CAGGCAGGTCTATTTCCGGC+CGG + chr1.2:49248346-49248365 MS.gene056152:CDS 60.0%
CAGGCGCGAATATGACTGGG+AGG + chr1.2:49247426-49247445 MS.gene056152:CDS 60.0%
CGGCCGCGTAATCCAAACGA+GGG - chr1.2:49247058-49247077 None:intergenic 60.0%
GCCAGAAGCGGTCCTTCAAG+CGG + chr1.2:49247460-49247479 MS.gene056152:CDS 60.0%
TCGAGGGGGAAATCGTGGTG+TGG - chr1.2:49248175-49248194 None:intergenic 60.0%
TCGGCCGCGTAATCCAAACG+AGG - chr1.2:49247059-49247078 None:intergenic 60.0%
CTGCTGGCATGCAGGGAGCC+AGG + chr1.2:49248275-49248294 MS.gene056152:CDS 70.0%
CTGGCTCCCTGCATGCCAGC+AGG - chr1.2:49248277-49248296 None:intergenic 70.0%
GGCCGTCGAGGGGGAAATCG+TGG - chr1.2:49248180-49248199 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49246597 49248920 49246597 ID=MS.gene056152
chr1.2 mRNA 49246597 49248920 49246597 ID=MS.gene056152.t1;Parent=MS.gene056152
chr1.2 exon 49246597 49247730 49246597 ID=MS.gene056152.t1.exon1;Parent=MS.gene056152.t1
chr1.2 CDS 49246597 49247730 49246597 ID=cds.MS.gene056152.t1;Parent=MS.gene056152.t1
chr1.2 exon 49248040 49248920 49248040 ID=MS.gene056152.t1.exon2;Parent=MS.gene056152.t1
chr1.2 CDS 49248040 49248920 49248040 ID=cds.MS.gene056152.t1;Parent=MS.gene056152.t1
Gene Sequence

>MS.gene056152

ATGAATATATTTATGGATTCAAGAGATAATAACAATAATAACAATTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTTCACCTTTGATTCCATGCAAAGTTTTATCTATTAAGTATATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGGGTGGAAATGGTAATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCTGAGACGATTTTCCCTCGTTTGGATTACGCGGCCGACCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGAACACCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCGATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAATAACAATGGTTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAGGTTAGGCCAGAAGCGGTCCTTCAAGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTATTTACTACCCTCGCGCAAGTACGCCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTAACACCATATTTTATTAAATTTGATGTCAATTAACAGAACATAAAATTGCATAATACTTAAATATGGTAATCTTCTCTCTTGCTAATCTTTAATTTATGTTATCCTTCGCACTGTGCATTACGCGTACACGTTGAGTTACCACTTGATTACTAAATTAATGAACTCTGATGTTGTTTGTTAATCCATTTAAGAATGTGCTTCTGTTATTTTGTTACCAGTTGAGTTTTGTATGATTTCATTTGATAGGATCATAGGAATATTTGCATTGTGTCTACTCATAATAAGTAGTATTATGATATTTTGTAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTAAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCTCCACACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCACGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCAAAGAAATTCAACGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACCGAGCAACAAATCTCTAATGACCATTCATCAGATGGAAATACCAATAAAATGGGTAATTTTTCCGATGGTTCGGGAACTCCTCGTCATCAACAAGTCTTACCAAAACGCTCCTCTAGTGAGAGTTTCCAATGGTATAAGGATAACCGCGAAGAAACGGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGGACAATTGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGTCGCGTGCTCTACCGTGATATATCTGGAGCAGTCAAACACATTGGAGAGGAACCATTCAG
Protein sequence

>MS.gene056152.t1

MNIFMDSRDNNNNNNSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVLSIKYMADPETDEVYAKLKLVPLGGNGNGNDAADYDTVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNNNNGLNSGANMTGREKVRPEAVLQAVTLAANKQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSTSENVSCLLSMASSTQSSKKFNDEKKPQLVLFGQKILTEQQISNDHSSDGNTNKMGNFSDGSGTPRHQQVLPKRSSSESFQWYKDNREETEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEEPF