Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056153.t1 | XP_013468193.1 | 96.8 | 311 | 10 | 0 | 1 | 311 | 392 | 702 | 2.60E-168 | 601.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056153.t1 | Q653H7 | 50.5 | 323 | 143 | 8 | 1 | 310 | 376 | 694 | 3.4e-76 | 286.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056153.t1 | A0A072VVW0 | 96.8 | 311 | 10 | 0 | 1 | 311 | 392 | 702 | 1.9e-168 | 601.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056152 | MS.gene056153 | 0.913319 | 7.06E-84 | -1.69E-46 |
MS.gene056153 | MS.gene45112 | 0.910864 | 1.16E-82 | -1.69E-46 |
MS.gene056153 | MS.gene45113 | 0.884985 | 1.20E-71 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056153.t1 | MTR_1g064430 | 96.785 | 311 | 10 | 0 | 1 | 311 | 392 | 702 | 0.0 | 617 |
MS.gene056153.t1 | MTR_1g064430 | 96.785 | 311 | 10 | 0 | 1 | 311 | 379 | 689 | 0.0 | 617 |
MS.gene056153.t1 | MTR_2g094570 | 50.303 | 330 | 125 | 10 | 1 | 309 | 355 | 666 | 3.91e-89 | 280 |
MS.gene056153.t1 | MTR_2g094570 | 50.303 | 330 | 125 | 10 | 1 | 309 | 411 | 722 | 9.75e-89 | 281 |
MS.gene056153.t1 | MTR_2g094570 | 48.742 | 318 | 124 | 10 | 1 | 297 | 355 | 654 | 1.34e-80 | 257 |
MS.gene056153.t1 | MTR_4g058930 | 50.462 | 325 | 124 | 7 | 1 | 309 | 362 | 665 | 6.33e-79 | 253 |
MS.gene056153.t1 | MTR_4g058930 | 50.462 | 325 | 124 | 7 | 1 | 309 | 362 | 665 | 1.36e-78 | 253 |
MS.gene056153.t1 | MTR_7g101280 | 46.352 | 233 | 111 | 5 | 1 | 231 | 386 | 606 | 1.16e-55 | 191 |
MS.gene056153.t1 | MTR_0041s0110 | 46.352 | 233 | 111 | 5 | 1 | 231 | 386 | 606 | 1.16e-55 | 191 |
MS.gene056153.t1 | MTR_1g094960 | 32.319 | 263 | 120 | 7 | 1 | 224 | 362 | 605 | 7.19e-22 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056153.t1 | AT4G30080 | 46.965 | 313 | 148 | 7 | 1 | 308 | 363 | 662 | 4.68e-71 | 232 |
MS.gene056153.t1 | AT2G28350 | 41.641 | 329 | 141 | 12 | 1 | 308 | 361 | 659 | 2.08e-60 | 204 |
MS.gene056153.t1 | AT2G28350 | 41.641 | 329 | 141 | 12 | 1 | 308 | 361 | 659 | 2.60e-60 | 204 |
MS.gene056153.t1 | AT1G59750 | 26.183 | 317 | 189 | 11 | 1 | 305 | 333 | 616 | 7.24e-13 | 69.3 |
Find 77 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATGGAAATACCAATAAAA+TGG | 0.189014 | 1.2:+49333298 | MS.gene056153:CDS |
TGAGAAAGGTGAAAGGTTTA+TGG | 0.219953 | 1.2:-49332838 | None:intergenic |
CGAAGAAACGGAAGCAAGTT+TGG | 0.233645 | 1.2:+49333415 | MS.gene056153:CDS |
GAAACGATGGCACTGAAATT+TGG | 0.305036 | 1.2:-49332914 | None:intergenic |
TCGTTTCCTAGTAACCTTCT+AGG | 0.317283 | 1.2:+49332930 | MS.gene056153:CDS |
AGTTCAGGCAGGTCTATTTC+CGG | 0.319570 | 1.2:+49333058 | MS.gene056153:CDS |
ACAATTGACCTTTCTTTACT+TGG | 0.344982 | 1.2:+49333488 | MS.gene056153:CDS |
GACAATCTCAATTTCTTCCT+TGG | 0.347743 | 1.2:-49332864 | None:intergenic |
CATGCCAGCAGGAGTACTTT+CGG | 0.368965 | 1.2:-49332979 | None:intergenic |
TCATTATGGTCTTCCGATAT+CGG | 0.371359 | 1.2:+49333019 | MS.gene056153:CDS |
CTCTCACTAGAGGAGCGTTT+TGG | 0.379568 | 1.2:-49333368 | None:intergenic |
CTGGCTCCCTGCATGCCAGC+AGG | 0.380532 | 1.2:-49332990 | None:intergenic |
TTCTTCCTTGGTTGTGAGAA+AGG | 0.380986 | 1.2:-49332852 | None:intergenic |
CGCGGTTATCCTTATACCAT+TGG | 0.383301 | 1.2:-49333394 | None:intergenic |
TGAGAGTTTCCAATGGTATA+AGG | 0.391430 | 1.2:+49333385 | MS.gene056153:CDS |
CTGCTGGCATGCAGGGAGCC+AGG | 0.396598 | 1.2:+49332991 | MS.gene056153:CDS |
AACTTGCTTCCGTTTCTTCG+CGG | 0.399377 | 1.2:-49333412 | None:intergenic |
AAGGAGGTTGACTATTCTAA+TGG | 0.418815 | 1.2:+49333823 | MS.gene056153:CDS |
GGAGCCAGGCATGCTCATTA+TGG | 0.423939 | 1.2:+49333005 | MS.gene056153:CDS |
TTTCGGGTAGACAACGGAAT+AGG | 0.433921 | 1.2:-49332962 | None:intergenic |
TGGTATTTCCATCTGATGAA+TGG | 0.434165 | 1.2:-49333289 | None:intergenic |
AGAAAGCTGGCAGACATGTT+TGG | 0.443426 | 1.2:+49333530 | MS.gene056153:CDS |
GTGCTCTACCGTGATATATC+TGG | 0.445579 | 1.2:+49333581 | MS.gene056153:CDS |
TCTCCACCTCAGTAAAGTTC+AGG | 0.453129 | 1.2:+49333043 | MS.gene056153:CDS |
TAAGGATAACCGCGAAGAAA+CGG | 0.457301 | 1.2:+49333403 | MS.gene056153:CDS |
ATGATCAAAAGGCACGAAAC+CGG | 0.458029 | 1.2:-49333081 | None:intergenic |
GTCATTAGAGATTTGTTGCT+CGG | 0.460103 | 1.2:-49333267 | None:intergenic |
GTTTGTGATTCTTACCTGAA+TGG | 0.461365 | 1.2:-49333629 | None:intergenic |
GATGGAAATACCAATAAAAT+GGG | 0.463679 | 1.2:+49333299 | MS.gene056153:CDS |
CTGAGGTGGAGATCCGATAT+CGG | 0.464440 | 1.2:-49333032 | None:intergenic |
ATGCCAGCAGGAGTACTTTC+GGG | 0.465859 | 1.2:-49332978 | None:intergenic |
CACTGAAATTTGGCCGTCGA+GGG | 0.472008 | 1.2:-49332904 | None:intergenic |
ATAGGTTGCTCTGACCTAGA+AGG | 0.479580 | 1.2:-49332944 | None:intergenic |
AAGTACTCCTGCTGGCATGC+AGG | 0.486614 | 1.2:+49332983 | MS.gene056153:CDS |
ATTTACTGCAAAATGTAAGA+AGG | 0.509927 | 1.2:+49332775 | MS.gene056153:CDS |
AGTTTAGCAGCATGATCAAA+AGG | 0.510146 | 1.2:-49333092 | None:intergenic |
CTCTGACCTAGAAGGTTACT+AGG | 0.513995 | 1.2:-49332936 | None:intergenic |
TGTCTCTTGCTTACTATCCA+TGG | 0.518182 | 1.2:+49333166 | MS.gene056153:CDS |
GGAAGCAAGTTTGGAGAGTA+CGG | 0.521728 | 1.2:+49333424 | MS.gene056153:CDS |
TGATGAACTGTACAGAAAGC+TGG | 0.523736 | 1.2:+49333517 | MS.gene056153:CDS |
CATAAGATCCAAGTAAAGAA+AGG | 0.525657 | 1.2:-49333496 | None:intergenic |
ACGAGGAGTTCCCGAACCAT+CGG | 0.527122 | 1.2:-49333330 | None:intergenic |
ATGTAAGAAGGGTGAGTCCA+TGG | 0.533350 | 1.2:+49332787 | MS.gene056153:CDS |
ACATTGGAGAGGAACCATTC+AGG | 0.535436 | 1.2:+49333615 | MS.gene056153:CDS |
TCTAATGACCATTCATCAGA+TGG | 0.537635 | 1.2:+49333281 | MS.gene056153:CDS |
AGTACTCCTGCTGGCATGCA+GGG | 0.540145 | 1.2:+49332984 | MS.gene056153:CDS |
AAGACCATAATGAGCATGCC+TGG | 0.540953 | 1.2:-49333009 | None:intergenic |
CTACCCGAAAGTACTCCTGC+TGG | 0.554091 | 1.2:+49332975 | MS.gene056153:CDS |
TTTACTGCAAAATGTAAGAA+GGG | 0.567494 | 1.2:+49332776 | MS.gene056153:CDS |
GCACTGAAATTTGGCCGTCG+AGG | 0.570322 | 1.2:-49332905 | None:intergenic |
GCTACTAATTCAACCAACCA+TGG | 0.579195 | 1.2:-49332804 | None:intergenic |
CACCTCAGTAAAGTTCAGGC+AGG | 0.589149 | 1.2:+49333047 | MS.gene056153:CDS |
CTGCCTGAACTTTACTGAGG+TGG | 0.589800 | 1.2:-49333046 | None:intergenic |
AAAGGTGAAAGGTTTATGGA+TGG | 0.590026 | 1.2:-49332834 | None:intergenic |
CTGAAATTTGGCCGTCGAGG+GGG | 0.590791 | 1.2:-49332902 | None:intergenic |
TCAAAAGGCACGAAACCGGC+CGG | 0.591651 | 1.2:-49333077 | None:intergenic |
CAGGCAGGTCTATTTCCGGC+CGG | 0.592530 | 1.2:+49333062 | MS.gene056153:CDS |
TGGCCGAAAAGAACAAGCTG+AGG | 0.609518 | 1.2:-49333233 | None:intergenic |
TTGGTTGTGAGAAAGGTGAA+AGG | 0.610407 | 1.2:-49332845 | None:intergenic |
TCTGGAGCAGTCAAACACAT+TGG | 0.623032 | 1.2:+49333599 | MS.gene056153:CDS |
AGACTGAGTAGAACTTGCCA+TGG | 0.625027 | 1.2:-49333183 | None:intergenic |
GGTAAGACTTGTTGATGACG+AGG | 0.626525 | 1.2:-49333347 | None:intergenic |
ACTGAAATTTGGCCGTCGAG+GGG | 0.629416 | 1.2:-49332903 | None:intergenic |
TTTCTCGAATCAGAAGATGT+CGG | 0.638567 | 1.2:+49333461 | MS.gene056153:CDS |
TCGAATCAGAAGATGTCGGT+CGG | 0.645828 | 1.2:+49333465 | MS.gene056153:CDS |
TTTCACCTTTCTCACAACCA+AGG | 0.649147 | 1.2:+49332847 | MS.gene056153:CDS |
TGACTGCTCCAGATATATCA+CGG | 0.657225 | 1.2:-49333589 | None:intergenic |
CCATTGGAAACTCTCACTAG+AGG | 0.665637 | 1.2:-49333378 | None:intergenic |
CCTCTAGTGAGAGTTTCCAA+TGG | 0.667381 | 1.2:+49333378 | MS.gene056153:CDS |
AAGAAGGGTGAGTCCATGGT+TGG | 0.682554 | 1.2:+49332791 | MS.gene056153:CDS |
GAGTACTTTCGGGTAGACAA+CGG | 0.687017 | 1.2:-49332968 | None:intergenic |
ATTAGGTTATTAGAGACACT+AGG | 0.687638 | 1.2:-49333116 | None:intergenic |
AGCAGTCAAACACATTGGAG+AGG | 0.695616 | 1.2:+49333604 | MS.gene056153:CDS |
AGAAGGTTACTAGGAAACGA+TGG | 0.704217 | 1.2:-49332927 | None:intergenic |
GACCTGCCTGAACTTTACTG+AGG | 0.725533 | 1.2:-49333049 | None:intergenic |
GTAACTTCACAAGAACAGCA+AGG | 0.734687 | 1.2:+49333804 | MS.gene056153:intron |
ACTTCACAAGAACAGCAAGG+AGG | 0.777122 | 1.2:+49333807 | MS.gene056153:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AGATGGAAATACCAATAAAA+TGG | + | chr1.2:49333298-49333317 | MS.gene056153:CDS | 25.0% |
! | ATTTACTGCAAAATGTAAGA+AGG | + | chr1.2:49332775-49332794 | MS.gene056153:CDS | 25.0% |
! | GATGGAAATACCAATAAAAT+GGG | + | chr1.2:49333299-49333318 | MS.gene056153:CDS | 25.0% |
! | TGAAATGTATTGTGAAATTC+AGG | - | chr1.2:49333663-49333682 | None:intergenic | 25.0% |
! | TTTACTGCAAAATGTAAGAA+GGG | + | chr1.2:49332776-49332795 | MS.gene056153:CDS | 25.0% |
!! | GGAAAAATTACCCATTTTAT+TGG | - | chr1.2:49333312-49333331 | None:intergenic | 25.0% |
!!! | AATAAGCATTGACTTATTTG+AGG | - | chr1.2:49333764-49333783 | None:intergenic | 25.0% |
AATGTATTGTGAAATTCAGG+AGG | - | chr1.2:49333660-49333679 | None:intergenic | 30.0% | |
ACAATTGACCTTTCTTTACT+TGG | + | chr1.2:49333488-49333507 | MS.gene056153:CDS | 30.0% | |
ATGTATTGTGAAATTCAGGA+GGG | - | chr1.2:49333659-49333678 | None:intergenic | 30.0% | |
ATTAGGTTATTAGAGACACT+AGG | - | chr1.2:49333119-49333138 | None:intergenic | 30.0% | |
CATAAGATCCAAGTAAAGAA+AGG | - | chr1.2:49333499-49333518 | None:intergenic | 30.0% | |
TGGCATAGAAAAATATGAGA+AGG | + | chr1.2:49333550-49333569 | MS.gene056153:CDS | 30.0% | |
! | AAAATGGGTAATTTTTCCGA+TGG | + | chr1.2:49333314-49333333 | MS.gene056153:CDS | 30.0% |
! | CTTACATTTTGCAGTAAATC+TGG | - | chr1.2:49332774-49332793 | None:intergenic | 30.0% |
! | TGCTAGATTTTTGCATCATT+AGG | - | chr1.2:49333136-49333155 | None:intergenic | 30.0% |
AAAGGTGAAAGGTTTATGGA+TGG | - | chr1.2:49332837-49332856 | None:intergenic | 35.0% | |
AAGGAGGTTGACTATTCTAA+TGG | + | chr1.2:49333823-49333842 | MS.gene056153:CDS | 35.0% | |
AGTTTAGCAGCATGATCAAA+AGG | - | chr1.2:49333095-49333114 | None:intergenic | 35.0% | |
CATATCTTTAGACCCTTTCT+GGG | + | chr1.2:49333684-49333703 | MS.gene056153:intron | 35.0% | |
GACAATCTCAATTTCTTCCT+TGG | - | chr1.2:49332867-49332886 | None:intergenic | 35.0% | |
GTTTGTGATTCTTACCTGAA+TGG | - | chr1.2:49333632-49333651 | None:intergenic | 35.0% | |
TCATATCTTTAGACCCTTTC+TGG | + | chr1.2:49333683-49333702 | MS.gene056153:intron | 35.0% | |
TCATTATGGTCTTCCGATAT+CGG | + | chr1.2:49333019-49333038 | MS.gene056153:CDS | 35.0% | |
TCTAATGACCATTCATCAGA+TGG | + | chr1.2:49333281-49333300 | MS.gene056153:CDS | 35.0% | |
TGAGAAAGGTGAAAGGTTTA+TGG | - | chr1.2:49332841-49332860 | None:intergenic | 35.0% | |
TGAGAGTTTCCAATGGTATA+AGG | + | chr1.2:49333385-49333404 | MS.gene056153:CDS | 35.0% | |
TGGTATTTCCATCTGATGAA+TGG | - | chr1.2:49333292-49333311 | None:intergenic | 35.0% | |
TTACGAAAACAACCCAGAAA+GGG | - | chr1.2:49333699-49333718 | None:intergenic | 35.0% | |
TTTCTCGAATCAGAAGATGT+CGG | + | chr1.2:49333461-49333480 | MS.gene056153:CDS | 35.0% | |
!! | AAACCTCAGCTTGTTCTTTT+CGG | + | chr1.2:49333230-49333249 | MS.gene056153:CDS | 35.0% |
!! | GTCATTAGAGATTTGTTGCT+CGG | - | chr1.2:49333270-49333289 | None:intergenic | 35.0% |
AGAAGGTTACTAGGAAACGA+TGG | - | chr1.2:49332930-49332949 | None:intergenic | 40.0% | |
CTTACGAAAACAACCCAGAA+AGG | - | chr1.2:49333700-49333719 | None:intergenic | 40.0% | |
GCTACTAATTCAACCAACCA+TGG | - | chr1.2:49332807-49332826 | None:intergenic | 40.0% | |
GTAACTTCACAAGAACAGCA+AGG | + | chr1.2:49333804-49333823 | MS.gene056153:intron | 40.0% | |
TAAGGATAACCGCGAAGAAA+CGG | + | chr1.2:49333403-49333422 | MS.gene056153:CDS | 40.0% | |
TCGTTTCCTAGTAACCTTCT+AGG | + | chr1.2:49332930-49332949 | MS.gene056153:CDS | 40.0% | |
TGACTGCTCCAGATATATCA+CGG | - | chr1.2:49333592-49333611 | None:intergenic | 40.0% | |
TGATGAACTGTACAGAAAGC+TGG | + | chr1.2:49333517-49333536 | MS.gene056153:CDS | 40.0% | |
TGTCTCTTGCTTACTATCCA+TGG | + | chr1.2:49333166-49333185 | MS.gene056153:CDS | 40.0% | |
TTCTTCCTTGGTTGTGAGAA+AGG | - | chr1.2:49332855-49332874 | None:intergenic | 40.0% | |
TTGGTTGTGAGAAAGGTGAA+AGG | - | chr1.2:49332848-49332867 | None:intergenic | 40.0% | |
TTTCACCTTTCTCACAACCA+AGG | + | chr1.2:49332847-49332866 | MS.gene056153:CDS | 40.0% | |
! | ATGATCAAAAGGCACGAAAC+CGG | - | chr1.2:49333084-49333103 | None:intergenic | 40.0% |
! | GAAACGATGGCACTGAAATT+TGG | - | chr1.2:49332917-49332936 | None:intergenic | 40.0% |
! | GGGTAATTTTTCCGATGGTT+CGG | + | chr1.2:49333319-49333338 | MS.gene056153:CDS | 40.0% |
! | GGTAATTTTTCCGATGGTTC+GGG | + | chr1.2:49333320-49333339 | MS.gene056153:CDS | 40.0% |
!!! | GTTGCTCGGTGAGAATTTTT+TGG | - | chr1.2:49333256-49333275 | None:intergenic | 40.0% |
AAGACCATAATGAGCATGCC+TGG | - | chr1.2:49333012-49333031 | None:intergenic | 45.0% | |
ACATTGGAGAGGAACCATTC+AGG | + | chr1.2:49333615-49333634 | MS.gene056153:CDS | 45.0% | |
ACTTCACAAGAACAGCAAGG+AGG | + | chr1.2:49333807-49333826 | MS.gene056153:CDS | 45.0% | |
AGAAAGCTGGCAGACATGTT+TGG | + | chr1.2:49333530-49333549 | MS.gene056153:CDS | 45.0% | |
AGACTGAGTAGAACTTGCCA+TGG | - | chr1.2:49333186-49333205 | None:intergenic | 45.0% | |
AGCAGTCAAACACATTGGAG+AGG | + | chr1.2:49333604-49333623 | MS.gene056153:CDS | 45.0% | |
AGTTCAGGCAGGTCTATTTC+CGG | + | chr1.2:49333058-49333077 | MS.gene056153:CDS | 45.0% | |
ATAGGTTGCTCTGACCTAGA+AGG | - | chr1.2:49332947-49332966 | None:intergenic | 45.0% | |
ATGTAAGAAGGGTGAGTCCA+TGG | + | chr1.2:49332787-49332806 | MS.gene056153:CDS | 45.0% | |
CCATTGGAAACTCTCACTAG+AGG | - | chr1.2:49333381-49333400 | None:intergenic | 45.0% | |
CCTCTAGTGAGAGTTTCCAA+TGG | + | chr1.2:49333378-49333397 | MS.gene056153:CDS | 45.0% | |
CGAAGAAACGGAAGCAAGTT+TGG | + | chr1.2:49333415-49333434 | MS.gene056153:CDS | 45.0% | |
CGCGGTTATCCTTATACCAT+TGG | - | chr1.2:49333397-49333416 | None:intergenic | 45.0% | |
CTCTGACCTAGAAGGTTACT+AGG | - | chr1.2:49332939-49332958 | None:intergenic | 45.0% | |
GGAAGCAAGTTTGGAGAGTA+CGG | + | chr1.2:49333424-49333443 | MS.gene056153:CDS | 45.0% | |
GTGCTCTACCGTGATATATC+TGG | + | chr1.2:49333581-49333600 | MS.gene056153:CDS | 45.0% | |
TCGAATCAGAAGATGTCGGT+CGG | + | chr1.2:49333465-49333484 | MS.gene056153:CDS | 45.0% | |
TCTCCACCTCAGTAAAGTTC+AGG | + | chr1.2:49333043-49333062 | MS.gene056153:CDS | 45.0% | |
! | AACTTGCTTCCGTTTCTTCG+CGG | - | chr1.2:49333415-49333434 | None:intergenic | 45.0% |
! | GAGTACTTTCGGGTAGACAA+CGG | - | chr1.2:49332971-49332990 | None:intergenic | 45.0% |
! | TCTGGAGCAGTCAAACACAT+TGG | + | chr1.2:49333599-49333618 | MS.gene056153:CDS | 45.0% |
! | TTTCGGGTAGACAACGGAAT+AGG | - | chr1.2:49332965-49332984 | None:intergenic | 45.0% |
!! | GGTAAGACTTGTTGATGACG+AGG | - | chr1.2:49333350-49333369 | None:intergenic | 45.0% |
AAGAAGGGTGAGTCCATGGT+TGG | + | chr1.2:49332791-49332810 | MS.gene056153:CDS | 50.0% | |
ACTGAAATTTGGCCGTCGAG+GGG | - | chr1.2:49332906-49332925 | None:intergenic | 50.0% | |
CACCTCAGTAAAGTTCAGGC+AGG | + | chr1.2:49333047-49333066 | MS.gene056153:CDS | 50.0% | |
CACTGAAATTTGGCCGTCGA+GGG | - | chr1.2:49332907-49332926 | None:intergenic | 50.0% | |
CTGAGGTGGAGATCCGATAT+CGG | - | chr1.2:49333035-49333054 | None:intergenic | 50.0% | |
CTGCCTGAACTTTACTGAGG+TGG | - | chr1.2:49333049-49333068 | None:intergenic | 50.0% | |
GACCTGCCTGAACTTTACTG+AGG | - | chr1.2:49333052-49333071 | None:intergenic | 50.0% | |
TGGCCGAAAAGAACAAGCTG+AGG | - | chr1.2:49333236-49333255 | None:intergenic | 50.0% | |
!! | ATGCCAGCAGGAGTACTTTC+GGG | - | chr1.2:49332981-49333000 | None:intergenic | 50.0% |
!! | CATGCCAGCAGGAGTACTTT+CGG | - | chr1.2:49332982-49333001 | None:intergenic | 50.0% |
!!! | CTCTCACTAGAGGAGCGTTT+TGG | - | chr1.2:49333371-49333390 | None:intergenic | 50.0% |
AAGTACTCCTGCTGGCATGC+AGG | + | chr1.2:49332983-49333002 | MS.gene056153:CDS | 55.0% | |
ACGAGGAGTTCCCGAACCAT+CGG | - | chr1.2:49333333-49333352 | None:intergenic | 55.0% | |
AGTACTCCTGCTGGCATGCA+GGG | + | chr1.2:49332984-49333003 | MS.gene056153:CDS | 55.0% | |
CTGAAATTTGGCCGTCGAGG+GGG | - | chr1.2:49332905-49332924 | None:intergenic | 55.0% | |
GCACTGAAATTTGGCCGTCG+AGG | - | chr1.2:49332908-49332927 | None:intergenic | 55.0% | |
GGAGCCAGGCATGCTCATTA+TGG | + | chr1.2:49333005-49333024 | MS.gene056153:CDS | 55.0% | |
! | TCAAAAGGCACGAAACCGGC+CGG | - | chr1.2:49333080-49333099 | None:intergenic | 55.0% |
!! | CTACCCGAAAGTACTCCTGC+TGG | + | chr1.2:49332975-49332994 | MS.gene056153:CDS | 55.0% |
CACCACGATTTCCCCCTCGA+CGG | + | chr1.2:49332891-49332910 | MS.gene056153:CDS | 60.0% | |
CAGGCAGGTCTATTTCCGGC+CGG | + | chr1.2:49333062-49333081 | MS.gene056153:CDS | 60.0% | |
TCGAGGGGGAAATCGTGGTG+TGG | - | chr1.2:49332891-49332910 | None:intergenic | 60.0% | |
CTGCTGGCATGCAGGGAGCC+AGG | + | chr1.2:49332991-49333010 | MS.gene056153:CDS | 70.0% | |
CTGGCTCCCTGCATGCCAGC+AGG | - | chr1.2:49332993-49333012 | None:intergenic | 70.0% | |
GGCCGTCGAGGGGGAAATCG+TGG | - | chr1.2:49332896-49332915 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 49332756 | 49333859 | 49332756 | ID=MS.gene056153 |
chr1.2 | mRNA | 49332756 | 49333859 | 49332756 | ID=MS.gene056153.t1;Parent=MS.gene056153 |
chr1.2 | exon | 49332756 | 49333636 | 49332756 | ID=MS.gene056153.t1.exon1;Parent=MS.gene056153.t1 |
chr1.2 | CDS | 49332756 | 49333636 | 49332756 | ID=cds.MS.gene056153.t1;Parent=MS.gene056153.t1 |
chr1.2 | exon | 49333805 | 49333859 | 49333805 | ID=MS.gene056153.t1.exon2;Parent=MS.gene056153.t1 |
chr1.2 | CDS | 49333805 | 49333859 | 49333805 | ID=cds.MS.gene056153.t1;Parent=MS.gene056153.t1 |
Gene Sequence |
Protein sequence |