AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45113

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45113.t1 MTR_1g064430 86.217 682 14 6 1 604 5 684 0.0 1172
MS.gene45113.t1 MTR_1g064430 86.033 673 14 6 10 604 1 671 0.0 1152
MS.gene45113.t1 MTR_2g094570 50.437 686 248 15 1 604 31 706 0.0 624
MS.gene45113.t1 MTR_2g094570 51.903 657 225 14 29 604 4 650 0.0 622
MS.gene45113.t1 MTR_2g094570 51.903 657 225 14 29 604 4 650 0.0 620
MS.gene45113.t1 MTR_4g058930 53.435 655 208 14 33 604 9 649 0.0 604
MS.gene45113.t1 MTR_4g058930 53.435 655 208 14 33 604 9 649 0.0 604
MS.gene45113.t1 MTR_7g101280 49.833 600 202 18 27 542 22 606 1.72e-174 510
MS.gene45113.t1 MTR_0041s0110 49.833 600 202 18 27 542 22 606 1.72e-174 510
MS.gene45113.t1 MTR_1g094960 59.242 422 122 9 10 399 1 404 6.66e-164 482
MS.gene45113.t1 MTR_7g101275 48.615 397 136 9 45 410 1 360 5.23e-107 328
MS.gene45113.t1 MTR_3g073420 40.000 515 251 11 33 516 16 503 1.56e-101 320
MS.gene45113.t1 MTR_0041s0120 46.569 408 140 11 45 410 1 372 1.80e-101 314
MS.gene45113.t1 MTR_5g061220 38.170 448 211 14 31 436 14 437 2.27e-79 260
MS.gene45113.t1 MTR_2g024430 39.340 394 160 13 33 398 17 359 7.15e-75 248
MS.gene45113.t1 MTR_5g040880 37.975 395 174 11 30 400 5 352 1.24e-74 248
MS.gene45113.t1 MTR_8g100050 34.901 404 208 7 15 395 38 409 8.41e-70 239
MS.gene45113.t1 MTR_2g093740 37.778 405 184 11 36 406 56 426 1.09e-69 239
MS.gene45113.t1 MTR_2g093740 37.778 405 184 11 36 406 56 426 3.38e-69 238
MS.gene45113.t1 MTR_8g100050 34.901 404 208 7 15 395 38 409 3.47e-69 240
MS.gene45113.t1 MTR_2g093740 37.778 405 184 11 36 406 56 426 5.73e-69 239
MS.gene45113.t1 MTR_5g082140 38.015 413 179 14 33 417 9 372 1.85e-68 229
MS.gene45113.t1 MTR_2g014770 35.322 419 204 11 32 420 51 432 1.20e-67 231
MS.gene45113.t1 MTR_4g124900 36.250 400 200 8 14 390 1 368 1.28e-67 239
MS.gene45113.t1 MTR_4g124900 36.250 400 200 8 14 390 1 368 1.51e-67 238
MS.gene45113.t1 MTR_2g014770 35.322 419 204 11 32 420 51 432 3.86e-67 231
MS.gene45113.t1 MTR_2g018690 36.247 389 190 8 27 390 14 369 4.01e-67 235
MS.gene45113.t1 MTR_1g058210 34.152 407 198 11 31 411 7 369 1.08e-66 225
MS.gene45113.t1 MTR_5g076270 35.884 379 186 9 30 383 18 364 1.58e-66 233
MS.gene45113.t1 MTR_8g079492 35.825 388 192 8 27 390 14 368 2.07e-66 233
MS.gene45113.t1 MTR_8g079492 35.825 388 192 8 27 390 14 368 2.13e-66 233
MS.gene45113.t1 MTR_2g093740 36.603 418 184 12 36 406 56 439 4.81e-66 229
MS.gene45113.t1 MTR_4g021580 34.368 419 199 11 20 406 3 377 1.18e-65 226
MS.gene45113.t1 MTR_1g024025 35.389 373 185 7 29 377 36 376 1.72e-65 233
MS.gene45113.t1 MTR_3g064050 35.884 379 186 9 30 383 20 366 1.74e-65 230
MS.gene45113.t1 MTR_4g021580 34.368 419 199 11 20 406 3 377 1.93e-65 226
MS.gene45113.t1 MTR_2g093740 36.603 418 184 12 36 406 56 439 2.07e-65 229
MS.gene45113.t1 MTR_2g093740 36.603 418 184 12 36 406 56 439 2.14e-65 228
MS.gene45113.t1 MTR_2g005240 36.598 388 185 9 36 398 23 374 4.70e-65 226
MS.gene45113.t1 MTR_4g088210 33.407 455 221 13 32 441 36 453 3.04e-64 224
MS.gene45113.t1 MTR_4g088210 33.407 455 221 13 32 441 36 453 4.01e-64 224
MS.gene45113.t1 MTR_4g060460 36.118 407 187 10 36 403 54 426 5.38e-63 222
MS.gene45113.t1 MTR_4g060460 36.118 407 187 10 36 403 54 426 5.91e-63 222
MS.gene45113.t1 MTR_8g101360 36.461 373 180 9 33 380 28 368 3.09e-60 217
MS.gene45113.t1 MTR_2g006270 33.505 388 184 12 35 395 12 352 7.52e-60 206
MS.gene45113.t1 MTR_5g040740 37.017 362 155 11 33 367 9 324 1.28e-59 204
MS.gene45113.t1 MTR_2g043250 35.958 381 187 9 24 380 11 358 4.49e-59 214
MS.gene45113.t1 MTR_8g027440 36.761 389 182 11 36 398 29 379 7.15e-59 209
MS.gene45113.t1 MTR_7g062540 33.409 443 217 15 24 441 4 393 1.94e-57 205
MS.gene45113.t1 MTR_2g006380 32.821 390 181 14 33 395 17 352 2.03e-54 192
MS.gene45113.t1 MTR_2g093740 39.423 312 141 8 109 406 19 296 1.14e-51 188
MS.gene45113.t1 MTR_2g093740 39.423 312 141 8 109 406 19 296 1.50e-51 189
MS.gene45113.t1 MTR_5g060780 34.826 402 183 15 33 403 9 362 7.47e-51 181
MS.gene45113.t1 MTR_5g061890 33.716 436 199 17 33 426 9 396 1.28e-50 180
MS.gene45113.t1 MTR_5g460920 34.577 402 184 15 33 403 9 362 8.23e-50 178
MS.gene45113.t1 MTR_8g079492 35.647 317 152 7 93 390 3 286 6.71e-49 182
MS.gene45113.t1 MTR_2g093740 37.846 325 141 9 109 406 19 309 3.66e-48 178
MS.gene45113.t1 MTR_2g093740 37.846 325 141 9 109 406 19 309 3.92e-48 179
MS.gene45113.t1 MTR_5g060630 28.846 416 206 14 31 393 7 385 2.62e-39 151
MS.gene45113.t1 MTR_5g460740 28.846 416 206 14 31 393 7 385 2.62e-39 151
MS.gene45113.t1 MTR_8g446900 28.809 361 191 11 82 426 12 322 1.49e-37 144
MS.gene45113.t1 MTR_5g062970 39.175 194 88 7 36 204 38 226 6.04e-37 138
MS.gene45113.t1 MTR_5g062960 34.356 163 83 5 279 433 9 155 1.96e-17 81.6
MS.gene45113.t1 MTR_3g064050 39.216 102 60 2 283 383 29 129 3.45e-15 79.3
MS.gene45113.t1 MTR_5g032260 39.560 91 53 2 285 374 63 152 5.94e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45113.t1 AT4G30080 51.231 650 229 16 29 604 12 647 0.0 573
MS.gene45113.t1 AT2G28350 49.008 655 244 17 28 604 2 644 0.0 559
MS.gene45113.t1 AT2G28350 49.008 655 244 17 28 604 2 644 0.0 559
MS.gene45113.t1 AT1G77850 42.051 390 197 8 31 398 14 396 9.61e-96 305
MS.gene45113.t1 AT1G77850 42.051 390 197 8 31 398 14 396 1.10e-95 305
MS.gene45113.t1 AT3G61830 31.129 620 323 20 18 604 7 555 8.49e-73 245
MS.gene45113.t1 AT1G59750 31.789 626 327 18 36 604 22 604 5.03e-71 241
MS.gene45113.t1 AT1G59750 31.688 628 327 18 36 604 22 606 1.32e-70 240
MS.gene45113.t1 AT1G59750 31.537 631 327 18 36 604 22 609 3.06e-70 239
MS.gene45113.t1 AT1G59750 31.537 631 327 18 36 604 22 609 3.06e-70 239
MS.gene45113.t1 AT5G37020 35.958 381 187 8 28 383 14 362 2.62e-69 239
MS.gene45113.t1 AT5G37020 35.958 381 187 8 28 383 14 362 5.61e-69 239
MS.gene45113.t1 AT2G33860 35.765 425 206 11 32 426 52 439 1.52e-68 234
MS.gene45113.t1 AT5G62000 33.890 419 206 11 11 395 30 411 2.68e-67 235
MS.gene45113.t1 AT5G62000 33.890 419 206 11 11 395 30 411 2.68e-67 235
MS.gene45113.t1 AT5G62000 33.890 419 206 11 11 395 30 411 2.68e-67 235
MS.gene45113.t1 AT5G62000 33.890 419 206 11 11 395 30 411 2.68e-67 235
MS.gene45113.t1 AT5G62000 33.890 419 206 11 11 395 30 411 4.45e-67 234
MS.gene45113.t1 AT1G19220 34.437 453 224 11 24 453 11 413 4.77e-67 237
MS.gene45113.t1 AT2G46530 29.860 643 313 22 11 604 3 556 1.01e-66 229
MS.gene45113.t1 AT5G60450 36.132 393 184 11 36 395 41 399 2.44e-66 231
MS.gene45113.t1 AT5G60450 36.132 393 184 11 36 395 65 423 3.27e-66 231
MS.gene45113.t1 AT1G30330 36.247 389 190 9 27 390 14 369 4.62e-66 233
MS.gene45113.t1 AT2G46530 30.744 618 297 22 36 604 42 577 7.56e-66 227
MS.gene45113.t1 AT1G30330 36.269 386 188 9 30 390 19 371 8.27e-66 232
MS.gene45113.t1 AT1G30330 36.269 386 188 9 30 390 19 371 8.27e-66 232
MS.gene45113.t1 AT5G20730 35.787 394 198 8 24 394 12 373 1.78e-65 233
MS.gene45113.t1 AT1G19850 36.022 372 177 8 33 377 51 388 3.47e-65 230
MS.gene45113.t1 AT1G19850 36.022 372 177 8 33 377 40 377 3.78e-65 229
MS.gene45113.t1 AT5G20730 35.696 395 198 9 24 394 12 374 4.43e-64 229
MS.gene45113.t1 AT5G20730 35.696 395 198 9 24 394 12 374 5.67e-64 228
MS.gene45113.t1 AT4G23980 34.368 419 208 10 36 427 12 390 5.13e-63 219
MS.gene45113.t1 AT4G23980 35.946 370 178 8 36 381 12 346 4.43e-62 217
MS.gene45113.t1 AT3G61830 31.159 552 282 18 80 604 24 504 1.09e-59 208
MS.gene45113.t1 AT1G35520 30.208 576 317 21 36 579 27 549 7.36e-56 199
MS.gene45113.t1 AT1G34310 30.017 573 322 20 36 579 27 549 1.20e-55 198
MS.gene45113.t1 AT1G34410 28.974 604 341 22 36 604 27 577 1.83e-54 195
MS.gene45113.t1 AT1G34390 29.049 568 332 20 36 579 27 547 2.10e-53 192
MS.gene45113.t1 AT1G35240 33.915 401 205 12 36 415 27 388 1.90e-52 189
MS.gene45113.t1 AT1G34170 32.898 383 197 13 36 396 25 369 5.45e-50 181
MS.gene45113.t1 AT1G35540 33.684 380 196 12 36 395 27 370 7.42e-50 182
MS.gene45113.t1 AT2G33860 36.508 315 152 8 126 426 2 282 1.10e-48 176
MS.gene45113.t1 AT2G46530 29.505 505 260 17 125 604 36 469 4.23e-46 170
MS.gene45113.t1 AT5G37020 36.059 269 129 6 126 383 31 267 1.37e-44 169
MS.gene45113.t1 AT1G34170 31.332 383 177 13 36 396 25 343 1.71e-43 162
MS.gene45113.t1 AT1G34170 31.332 383 177 13 36 396 25 343 7.40e-43 162
MS.gene45113.t1 AT1G43950 40.000 200 96 8 36 215 27 222 4.06e-34 129

Find 161 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGATGAATATATTTA+TGG 0.118268 1.2:+49304141 MS.gene45113:CDS
GTCTCGAATAAGTTGGTTTA+TGG 0.152750 1.2:+49305188 MS.gene45113:CDS
CAGATGGAATACCAATAAAA+TGG 0.196241 1.2:+49306126 MS.gene45113:intron
GCATAAACCTCATCTGTTTC+AGG 0.203134 1.2:-49304403 None:intergenic
CCCTCCTCTTCAGAACATTT+TGG 0.208126 1.2:+49304628 MS.gene45113:CDS
TGAGAAAGGTGAAAGGTTTA+TGG 0.219953 1.2:-49305669 None:intergenic
CGAAGAAACGGAAGCAAGTT+TGG 0.233645 1.2:+49306243 MS.gene45113:CDS
TAAGCTTAAGCTTGTTCCTT+TGG 0.291537 1.2:+49304426 MS.gene45113:CDS
TGGTTTATGGGAATTGTATC+TGG 0.292586 1.2:+49305201 MS.gene45113:CDS
GAAACGATGGCACTGAAATT+TGG 0.305036 1.2:-49305745 None:intergenic
GGACAATTCATGAAGTTAAC+AGG 0.315804 1.2:-49304325 None:intergenic
TCGTTTCCTAGTAACCTTCT+AGG 0.317283 1.2:+49305761 MS.gene45113:CDS
AGTTCAGGCAGGTCTATTTC+CGG 0.319570 1.2:+49305888 MS.gene45113:CDS
TTCACCTTGGAGGCTTCTTC+AGG 0.328238 1.2:+49305257 MS.gene45113:CDS
AAGCTTAAGCTTGTTCCTTT+GGG 0.328422 1.2:+49304427 MS.gene45113:CDS
AGAAGCCTCCAAGGTGAATT+AGG 0.335922 1.2:-49305252 None:intergenic
ATGCAGATTCGATGGTGTTC+TGG 0.343933 1.2:+49305129 MS.gene45113:CDS
ACAATTGACCTTTCTTTACT+TGG 0.344982 1.2:+49306316 MS.gene45113:CDS
GACAATCTCAATTTCTTCCT+TGG 0.347743 1.2:-49305695 None:intergenic
TCTCGAATAAGTTGGTTTAT+GGG 0.357035 1.2:+49305189 MS.gene45113:CDS
AATGTCTTTGCAAATGAAAC+AGG 0.359372 1.2:-49304516 None:intergenic
TACCGCTGAAGGACCGCTTC+TGG 0.362466 1.2:-49305010 None:intergenic
ATGGCGAGACGTGGAAGTTT+AGG 0.367612 1.2:+49304663 MS.gene45113:CDS
GGAGCCAGGCATGCTCATTA+TGG 0.370077 1.2:+49305835 MS.gene45113:intron
TCATTATGGTCTTCCGATAT+CGG 0.371359 1.2:+49305849 MS.gene45113:CDS
CATGAGGATCCATTACCATT+AGG 0.376847 1.2:+49304851 MS.gene45113:CDS
CTCTCACTAGAGGAGCGTTT+TGG 0.379568 1.2:-49306196 None:intergenic
TTCTTCCTTGGTTGTGAGAA+AGG 0.380986 1.2:-49305683 None:intergenic
CGCGGTTATCCTTATACCAT+TGG 0.383301 1.2:-49306222 None:intergenic
TGAGAGTTTCCAATGGTATA+AGG 0.391430 1.2:+49306213 MS.gene45113:CDS
AACTTGCTTCCGTTTCTTCG+CGG 0.399377 1.2:-49306240 None:intergenic
AGTTTGTTGATCCCCTTCTC+TGG 0.400220 1.2:+49305229 MS.gene45113:CDS
AACTCAGGCGCGAATATGAC+TGG 0.403386 1.2:+49304971 MS.gene45113:CDS
AATCACAAGAAGCTTCTTGC+CGG 0.403468 1.2:+49304746 MS.gene45113:CDS
CCTGCTGGCATGCAGGAGCC+AGG 0.430634 1.2:+49305821 MS.gene45113:intron
TTTCGGGTAGACAACGGAAT+AGG 0.433921 1.2:-49305793 None:intergenic
GGCTAATAAGCAACCGTTTG+AGG 0.435944 1.2:+49305041 MS.gene45113:intron
CCAACAGGATTCCACCCTAA+TGG 0.436228 1.2:-49304866 None:intergenic
AGAAAGCTGGCAGACATGTT+TGG 0.443426 1.2:+49306358 MS.gene45113:CDS
GTGCTCTACCGTGATATATC+TGG 0.445579 1.2:+49306409 MS.gene45113:CDS
GGAATCAAAGGTGAAACCTT+TGG 0.447087 1.2:-49304346 None:intergenic
TACACAGAATGAGAATCAAA+TGG 0.448127 1.2:+49304913 MS.gene45113:CDS
ATGAGGATCCATTACCATTA+GGG 0.450034 1.2:+49304852 MS.gene45113:CDS
TCTGGCCTAATTCACCTTGG+AGG 0.451766 1.2:+49305247 MS.gene45113:CDS
TCTCCACCTCAGTAAAGTTC+AGG 0.453129 1.2:+49305873 MS.gene45113:CDS
ACACAGAATGAGAATCAAAT+GGG 0.454771 1.2:+49304914 MS.gene45113:CDS
TAAGGATAACCGCGAAGAAA+CGG 0.457301 1.2:+49306231 MS.gene45113:CDS
ATGATCAAAAGGCACGAAAC+CGG 0.458029 1.2:-49305911 None:intergenic
GTTTGTGATTCTTACCTGAA+TGG 0.461365 1.2:-49306457 None:intergenic
CTGAGGTGGAGATCCGATAT+CGG 0.464440 1.2:-49305862 None:intergenic
AGATGGAATACCAATAAAAT+GGG 0.466976 1.2:+49306127 MS.gene45113:intron
TGGGATTCGACGAGCGAAGA+AGG 0.469310 1.2:+49304814 MS.gene45113:CDS
CACTGAAATTTGGCCGTCGA+GGG 0.472008 1.2:-49305735 None:intergenic
ATAGGTTGCTCTGACCTAGA+AGG 0.479580 1.2:-49305775 None:intergenic
TGCATTGCCGCCTCTACTAA+AGG 0.482510 1.2:-49305111 None:intergenic
CAACTATGGCATGCTTGTGC+AGG 0.483052 1.2:+49304226 MS.gene45113:CDS
GGATTCCACCCTAATGGTAA+TGG 0.485472 1.2:-49304860 None:intergenic
ATCACAAGAAGCTTCTTGCC+GGG 0.486243 1.2:+49304747 MS.gene45113:CDS
AAAATGGTGATCTTTGTGTT+GGG 0.488407 1.2:+49304795 MS.gene45113:CDS
TTAATAGATAAAACTTTGCA+TGG 0.488914 1.2:-49304367 None:intergenic
AGACGAATCCTCGGTTTCAA+AGG 0.490672 1.2:-49305169 None:intergenic
CGACGAGCGAAGAAGGGTAT+TGG 0.491306 1.2:+49304821 MS.gene45113:CDS
TTCTCTGGCCTAATTCACCT+TGG 0.492130 1.2:+49305244 MS.gene45113:CDS
AAAACTTTGCATGGAATCAA+AGG 0.504526 1.2:-49304358 None:intergenic
ATTTACTGCAAAATGTAAGA+AGG 0.509927 1.2:+49305606 MS.gene45113:CDS
AGTTTAGCAGCATGATCAAA+AGG 0.510146 1.2:-49305922 None:intergenic
CTCTGACCTAGAAGGTTACT+AGG 0.513995 1.2:-49305767 None:intergenic
AAGTTTAGGCATATTTATAG+AGG 0.517507 1.2:+49304677 MS.gene45113:CDS
TGTCTCTTGCTTACTATCCA+TGG 0.518182 1.2:+49305996 MS.gene45113:CDS
CCATTAGGGTGGAATCCTGT+TGG 0.519653 1.2:+49304866 MS.gene45113:CDS
GGAAGCAAGTTTGGAGAGTA+CGG 0.521728 1.2:+49306252 MS.gene45113:CDS
TGACTGGGAGGGAAAAGGTT+AGG 0.521859 1.2:+49304987 MS.gene45113:CDS
TAAACTTTACTGTTCACTGT+TGG 0.522539 1.2:-49304265 None:intergenic
TGATGAACTGTACAGAAAGC+TGG 0.523736 1.2:+49306345 MS.gene45113:CDS
GGTGTTTAGATCCTCAACTA+TGG 0.524660 1.2:+49304212 MS.gene45113:CDS
GGGTAGTAAATAACCTCAAA+CGG 0.525195 1.2:-49305054 None:intergenic
CATAAGATCCAAGTAAAGAA+AGG 0.525657 1.2:-49306324 None:intergenic
ACGAGGAGTTCCCGAACCAT+CGG 0.527122 1.2:-49306158 None:intergenic
GCCAAAATGTTCTGAAGAGG+AGG 0.527805 1.2:-49304629 None:intergenic
TTCTGTGTAAACCAAGGAAG+AGG 0.532226 1.2:-49304899 None:intergenic
GAATATGACTGGGAGGGAAA+AGG 0.532595 1.2:+49304982 MS.gene45113:CDS
ATGTAAGAAGGGTGAGTCCA+TGG 0.533350 1.2:+49305618 MS.gene45113:CDS
AGGATTCGTCTCGAATAAGT+TGG 0.533362 1.2:+49305181 MS.gene45113:CDS
GAAAATGGTGATCTTTGTGT+TGG 0.533797 1.2:+49304794 MS.gene45113:CDS
ACATTGGAGAGGAACCATTC+AGG 0.535436 1.2:+49306443 MS.gene45113:CDS
AAGACCATAATGAGCATGCC+TGG 0.540953 1.2:-49305839 None:intergenic
GCATGCTTGTGCAGGTGGAA+TGG 0.542227 1.2:+49304234 MS.gene45113:CDS
GCGAAGAAGGGTATTGGTGG+TGG 0.550842 1.2:+49304827 MS.gene45113:CDS
GGGATTCGACGAGCGAAGAA+GGG 0.551807 1.2:+49304815 MS.gene45113:CDS
AAAGTTTATTACTTTCCTCA+AGG 0.553230 1.2:+49304280 MS.gene45113:CDS
CTATGGCATGCTTGTGCAGG+TGG 0.553241 1.2:+49304229 MS.gene45113:CDS
TGTGAAGGCGCCTTTAGTAG+AGG 0.555008 1.2:+49305101 MS.gene45113:CDS
AAGGTGAATTAGGCCAGAGA+AGG 0.557096 1.2:-49305242 None:intergenic
TAACTTCATGAATTGTCCAA+AGG 0.561840 1.2:+49304330 MS.gene45113:CDS
AATAACAATGGTTTGAACTC+AGG 0.561882 1.2:+49304956 MS.gene45113:CDS
AACTCTGGCGTACTTGCGCG+AGG 0.565767 1.2:-49305075 None:intergenic
TTTACTGCAAAATGTAAGAA+GGG 0.567494 1.2:+49305607 MS.gene45113:CDS
TTAGCCAAAATGTTCTGAAG+AGG 0.569408 1.2:-49304632 None:intergenic
GCACTGAAATTTGGCCGTCG+AGG 0.570322 1.2:-49305736 None:intergenic
CAAGATGGCCTTTGAAACCG+AGG 0.577088 1.2:+49305161 MS.gene45113:CDS
CGAGCGAAGAAGGGTATTGG+TGG 0.577713 1.2:+49304824 MS.gene45113:CDS
GCTACTAATTCAACCAACCA+TGG 0.579195 1.2:-49305635 None:intergenic
ATTCATCAGAAGAAGTTGAA+AGG 0.580416 1.2:+49304191 MS.gene45113:CDS
AGGTGAATTAGGCCAGAGAA+GGG 0.583510 1.2:-49305241 None:intergenic
ATTAACAACAACAATAACAA+TGG 0.588569 1.2:+49304944 MS.gene45113:CDS
CACCTCAGTAAAGTTCAGGC+AGG 0.589149 1.2:+49305877 MS.gene45113:CDS
CTGCCTGAACTTTACTGAGG+TGG 0.589800 1.2:-49305876 None:intergenic
AAAGGTGAAAGGTTTATGGA+TGG 0.590026 1.2:-49305665 None:intergenic
CTGAAATTTGGCCGTCGAGG+GGG 0.590791 1.2:-49305733 None:intergenic
TCAAAAGGCACGAAACCGGC+CGG 0.591651 1.2:-49305907 None:intergenic
GGCGCCTTCACACAAAACTC+TGG 0.592521 1.2:-49305090 None:intergenic
CAGGCAGGTCTATTTCCGGC+CGG 0.592530 1.2:+49305892 MS.gene45113:CDS
GTAGTCAAAAGATGCCGCCT+CGG 0.596640 1.2:-49304704 None:intergenic
AAGATGTTCATGGCGAGACG+TGG 0.596686 1.2:+49304654 MS.gene45113:CDS
AGGCGGCAATGCAGATTCGA+TGG 0.597819 1.2:+49305121 MS.gene45113:CDS
TCTGATGCTAACAATGGTGG+AGG 0.600675 1.2:+49304546 MS.gene45113:CDS
GTTACCTGAAGAAGCCTCCA+AGG 0.601497 1.2:-49305261 None:intergenic
GCTGCAGATTATGACACTGT+TGG 0.602356 1.2:+49304471 MS.gene45113:intron
TTCTGGAATAAGATTCAAGA+TGG 0.603114 1.2:+49305146 MS.gene45113:CDS
GGGTATTGGTGGTGGACATG+AGG 0.604425 1.2:+49304835 MS.gene45113:CDS
TTCTCATTCTGTGTAAACCA+AGG 0.607875 1.2:-49304905 None:intergenic
GCAGATTATGACACTGTTGG+AGG 0.608851 1.2:+49304474 MS.gene45113:intron
TTGGTTGTGAGAAAGGTGAA+AGG 0.610407 1.2:-49305676 None:intergenic
CAATCTGATGCTAACAATGG+TGG 0.611120 1.2:+49304543 MS.gene45113:CDS
GCATGTTCAGCATGACCTTG+AGG 0.617891 1.2:-49304295 None:intergenic
TCACAAGAAGCTTCTTGCCG+GGG 0.620934 1.2:+49304748 MS.gene45113:CDS
TCTGGAGCAGTCAAACACAT+TGG 0.623032 1.2:+49306427 MS.gene45113:CDS
ACTTATTCGAGACGAATCCT+CGG 0.623357 1.2:-49305178 None:intergenic
AATGTTCTGAAGAGGAGGGT+CGG 0.624657 1.2:-49304624 None:intergenic
AGACTGAGTAGAACTTGCCA+TGG 0.625027 1.2:-49306013 None:intergenic
GCACAAGCATGCCATAGTTG+AGG 0.626456 1.2:-49304223 None:intergenic
GGTAAGACTTGTTGATGACG+AGG 0.626525 1.2:-49306175 None:intergenic
ACTGAAATTTGGCCGTCGAG+GGG 0.629416 1.2:-49305734 None:intergenic
AGGATCCATTACCATTAGGG+TGG 0.632365 1.2:+49304855 MS.gene45113:CDS
TTTCTCGAATCAGAAGATGT+CGG 0.638567 1.2:+49306289 MS.gene45113:CDS
GGCTGATCCTGAAACAGATG+AGG 0.642209 1.2:+49304396 MS.gene45113:CDS
TCGAATCAGAAGATGTCGGT+CGG 0.645828 1.2:+49306293 MS.gene45113:CDS
ACTCAGGCGCGAATATGACT+GGG 0.647010 1.2:+49304972 MS.gene45113:CDS
AGGCGCGAATATGACTGGGA+GGG 0.648683 1.2:+49304976 MS.gene45113:CDS
TTTCACCTTTCTCACAACCA+AGG 0.649147 1.2:+49305678 MS.gene45113:CDS
GGAAAAGGTTAGGCCAGAAG+CGG 0.650274 1.2:+49304997 MS.gene45113:CDS
TGACTGCTCCAGATATATCA+CGG 0.657225 1.2:-49306417 None:intergenic
CCAAAATGTTCTGAAGAGGA+GGG 0.662547 1.2:-49304628 None:intergenic
CCATTGGAAACTCTCACTAG+AGG 0.665637 1.2:-49306206 None:intergenic
GTCGGCCGCGTAATCAAACG+AGG 0.667235 1.2:-49304606 None:intergenic
CCTCTAGTGAGAGTTTCCAA+TGG 0.667381 1.2:+49306206 MS.gene45113:CDS
ACTCAATCTGATGCTAACAA+TGG 0.675509 1.2:+49304540 MS.gene45113:CDS
ACTCTGGCGTACTTGCGCGA+GGG 0.681238 1.2:-49305074 None:intergenic
AAGAAGGGTGAGTCCATGGT+TGG 0.682554 1.2:+49305622 MS.gene45113:CDS
CAGGCGCGAATATGACTGGG+AGG 0.684044 1.2:+49304975 MS.gene45113:CDS
ATTAGGTTATTAGAGACACT+AGG 0.687638 1.2:-49305946 None:intergenic
GGTGAATTAGGCCAGAGAAG+GGG 0.693414 1.2:-49305240 None:intergenic
AGCAGTCAAACACATTGGAG+AGG 0.695616 1.2:+49306432 MS.gene45113:CDS
AGAAGGTTACTAGGAAACGA+TGG 0.704217 1.2:-49305758 None:intergenic
GAAGGCGCCTTTAGTAGAGG+CGG 0.708805 1.2:+49305104 MS.gene45113:CDS
CACAGAATGAGAATCAAATG+GGG 0.710437 1.2:+49304915 MS.gene45113:CDS
GGTCATGCTGAACATGCATG+TGG 0.714823 1.2:+49304301 MS.gene45113:CDS
TTTATAGAGGAACACCGAGG+CGG 0.715637 1.2:+49304690 MS.gene45113:CDS
GACCTGCCTGAACTTTACTG+AGG 0.725533 1.2:-49305879 None:intergenic
TCGGCCGCGTAATCAAACGA+GGG 0.762719 1.2:-49304605 None:intergenic
ATATTTATAGAGGAACACCG+AGG 0.862150 1.2:+49304687 MS.gene45113:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTAATAAAATA+TGG - chr1.2:49305288-49305307 None:intergenic 10.0%
!! AATTGCATAATACTTAAATA+TGG + chr1.2:49305325-49305344 MS.gene45113:intron 15.0%
!! TTTGAAGATGAATATATTTA+TGG + chr1.2:49304141-49304160 MS.gene45113:CDS 15.0%
!!! AGTTTTATCTATTAAGTATA+TGG + chr1.2:49304375-49304394 MS.gene45113:CDS 15.0%
!! ATTAACAACAACAATAACAA+TGG + chr1.2:49304944-49304963 MS.gene45113:CDS 20.0%
!! TCATTAATTTAGTAATCAAG+TGG - chr1.2:49305422-49305441 None:intergenic 20.0%
!! TTAATAGATAAAACTTTGCA+TGG - chr1.2:49304370-49304389 None:intergenic 20.0%
!! TTTGTATGATTTCATTTGAT+AGG + chr1.2:49305505-49305524 MS.gene45113:intron 20.0%
!!! ATGATATTTTGTAGGTTAAA+TGG + chr1.2:49305573-49305592 MS.gene45113:intron 20.0%
!!! GTAGTATTATGATATTTTGT+AGG + chr1.2:49305565-49305584 MS.gene45113:intron 20.0%
!!! TGATATTTTGTAGGTTAAAT+GGG + chr1.2:49305574-49305593 MS.gene45113:intron 20.0%
! AAAGTTTATTACTTTCCTCA+AGG + chr1.2:49304280-49304299 MS.gene45113:CDS 25.0%
! AAGTTTAGGCATATTTATAG+AGG + chr1.2:49304677-49304696 MS.gene45113:CDS 25.0%
! AGATGGAATACCAATAAAAT+GGG + chr1.2:49306127-49306146 MS.gene45113:intron 25.0%
! ATTTACTGCAAAATGTAAGA+AGG + chr1.2:49305606-49305625 MS.gene45113:CDS 25.0%
! ATTTCATTTGATAGGATCAT+AGG + chr1.2:49305513-49305532 MS.gene45113:intron 25.0%
! TTTACTGCAAAATGTAAGAA+GGG + chr1.2:49305607-49305626 MS.gene45113:CDS 25.0%
!! GGAAAAATTACCCATTTTAT+TGG - chr1.2:49306140-49306159 None:intergenic 25.0%
AAAACTTTGCATGGAATCAA+AGG - chr1.2:49304361-49304380 None:intergenic 30.0%
AAAATGGTGATCTTTGTGTT+GGG + chr1.2:49304795-49304814 MS.gene45113:CDS 30.0%
AATAACAATGGTTTGAACTC+AGG + chr1.2:49304956-49304975 MS.gene45113:CDS 30.0%
AATGTCTTTGCAAATGAAAC+AGG - chr1.2:49304519-49304538 None:intergenic 30.0%
ACAATTGACCTTTCTTTACT+TGG + chr1.2:49306316-49306335 MS.gene45113:CDS 30.0%
ACACAGAATGAGAATCAAAT+GGG + chr1.2:49304914-49304933 MS.gene45113:CDS 30.0%
ATTAGGTTATTAGAGACACT+AGG - chr1.2:49305949-49305968 None:intergenic 30.0%
ATTCATCAGAAGAAGTTGAA+AGG + chr1.2:49304191-49304210 MS.gene45113:CDS 30.0%
CAGATGGAATACCAATAAAA+TGG + chr1.2:49306126-49306145 MS.gene45113:intron 30.0%
CATAAGATCCAAGTAAAGAA+AGG - chr1.2:49306327-49306346 None:intergenic 30.0%
GAAATCATACAAAACTCAAC+AGG - chr1.2:49305498-49305517 None:intergenic 30.0%
TAAACTTTACTGTTCACTGT+TGG - chr1.2:49304268-49304287 None:intergenic 30.0%
TAACTTCATGAATTGTCCAA+AGG + chr1.2:49304330-49304349 MS.gene45113:CDS 30.0%
TACACAGAATGAGAATCAAA+TGG + chr1.2:49304913-49304932 MS.gene45113:CDS 30.0%
TGGCATAGAAAAATATGAGA+AGG + chr1.2:49306378-49306397 MS.gene45113:CDS 30.0%
! AAAATGGGTAATTTTTCCGA+TGG + chr1.2:49306142-49306161 MS.gene45113:CDS 30.0%
! AACAGAAGCACATTCTTAAA+TGG - chr1.2:49305466-49305485 None:intergenic 30.0%
! CTTACATTTTGCAGTAAATC+TGG - chr1.2:49305605-49305624 None:intergenic 30.0%
! TGCTAGATTTTTGCATCATT+AGG - chr1.2:49305966-49305985 None:intergenic 30.0%
!! TCTCGAATAAGTTGGTTTAT+GGG + chr1.2:49305189-49305208 MS.gene45113:CDS 30.0%
!! TTCTGGAATAAGATTCAAGA+TGG + chr1.2:49305146-49305165 MS.gene45113:CDS 30.0%
!!! ATTTTGGCTAAAGATGTTCA+TGG + chr1.2:49304644-49304663 MS.gene45113:CDS 30.0%
AAAGGTGAAAGGTTTATGGA+TGG - chr1.2:49305668-49305687 None:intergenic 35.0%
ACTCAATCTGATGCTAACAA+TGG + chr1.2:49304540-49304559 MS.gene45113:CDS 35.0%
AGTTTAGCAGCATGATCAAA+AGG - chr1.2:49305925-49305944 None:intergenic 35.0%
ATATTTATAGAGGAACACCG+AGG + chr1.2:49304687-49304706 MS.gene45113:CDS 35.0%
ATGAGGATCCATTACCATTA+GGG + chr1.2:49304852-49304871 MS.gene45113:CDS 35.0%
CACAGAATGAGAATCAAATG+GGG + chr1.2:49304915-49304934 MS.gene45113:CDS 35.0%
GAAAATGGTGATCTTTGTGT+TGG + chr1.2:49304794-49304813 MS.gene45113:CDS 35.0%
GACAATCTCAATTTCTTCCT+TGG - chr1.2:49305698-49305717 None:intergenic 35.0%
GGACAATTCATGAAGTTAAC+AGG - chr1.2:49304328-49304347 None:intergenic 35.0%
GGGTAGTAAATAACCTCAAA+CGG - chr1.2:49305057-49305076 None:intergenic 35.0%
TCATTATGGTCTTCCGATAT+CGG + chr1.2:49305849-49305868 MS.gene45113:CDS 35.0%
TCTAATGACCATTCATCAGA+TGG + chr1.2:49306110-49306129 MS.gene45113:intron 35.0%
TGAGAAAGGTGAAAGGTTTA+TGG - chr1.2:49305672-49305691 None:intergenic 35.0%
TGAGAGTTTCCAATGGTATA+AGG + chr1.2:49306213-49306232 MS.gene45113:CDS 35.0%
TGGTTTATGGGAATTGTATC+TGG + chr1.2:49305201-49305220 MS.gene45113:CDS 35.0%
TTCTCATTCTGTGTAAACCA+AGG - chr1.2:49304908-49304927 None:intergenic 35.0%
TTGGTATTCCATCTGATGAA+TGG - chr1.2:49306121-49306140 None:intergenic 35.0%
TTTCTCGAATCAGAAGATGT+CGG + chr1.2:49306289-49306308 MS.gene45113:CDS 35.0%
! AAGCTTAAGCTTGTTCCTTT+GGG + chr1.2:49304427-49304446 MS.gene45113:CDS 35.0%
! AGAGGAAAATTTTCTCCAAC+AGG - chr1.2:49304884-49304903 None:intergenic 35.0%
! GAGAAAATTTTCCTCTTCCT+TGG + chr1.2:49304888-49304907 MS.gene45113:CDS 35.0%
! TAAGCTTAAGCTTGTTCCTT+TGG + chr1.2:49304426-49304445 MS.gene45113:CDS 35.0%
!! AAACCTCAGCTTGTTCTTTT+CGG + chr1.2:49306060-49306079 MS.gene45113:intron 35.0%
!! GTCATTAGAGATTTGTTGCT+CGG - chr1.2:49306099-49306118 None:intergenic 35.0%
!! GTCTCGAATAAGTTGGTTTA+TGG + chr1.2:49305188-49305207 MS.gene45113:CDS 35.0%
!! TTAGCCAAAATGTTCTGAAG+AGG - chr1.2:49304635-49304654 None:intergenic 35.0%
!! TTCGATTGTGTTTTTGAGAG+CGG + chr1.2:49304772-49304791 MS.gene45113:CDS 35.0%
AATCACAAGAAGCTTCTTGC+CGG + chr1.2:49304746-49304765 MS.gene45113:CDS 40.0%
ACTTATTCGAGACGAATCCT+CGG - chr1.2:49305181-49305200 None:intergenic 40.0%
AGAAGGTTACTAGGAAACGA+TGG - chr1.2:49305761-49305780 None:intergenic 40.0%
AGGATTCGTCTCGAATAAGT+TGG + chr1.2:49305181-49305200 MS.gene45113:CDS 40.0%
CAAAAACACAATCGAATCCC+CGG - chr1.2:49304768-49304787 None:intergenic 40.0%
CAATCTGATGCTAACAATGG+TGG + chr1.2:49304543-49304562 MS.gene45113:CDS 40.0%
CATGAGGATCCATTACCATT+AGG + chr1.2:49304851-49304870 MS.gene45113:CDS 40.0%
GCATAAACCTCATCTGTTTC+AGG - chr1.2:49304406-49304425 None:intergenic 40.0%
GCTACTAATTCAACCAACCA+TGG - chr1.2:49305638-49305657 None:intergenic 40.0%
GGAATCAAAGGTGAAACCTT+TGG - chr1.2:49304349-49304368 None:intergenic 40.0%
GGTGTTTAGATCCTCAACTA+TGG + chr1.2:49304212-49304231 MS.gene45113:CDS 40.0%
TAAGGATAACCGCGAAGAAA+CGG + chr1.2:49306231-49306250 MS.gene45113:CDS 40.0%
TCGTTTCCTAGTAACCTTCT+AGG + chr1.2:49305761-49305780 MS.gene45113:CDS 40.0%
TGACTGCTCCAGATATATCA+CGG - chr1.2:49306420-49306439 None:intergenic 40.0%
TGATGAACTGTACAGAAAGC+TGG + chr1.2:49306345-49306364 MS.gene45113:CDS 40.0%
TGTCTCTTGCTTACTATCCA+TGG + chr1.2:49305996-49306015 MS.gene45113:CDS 40.0%
TTCTGTGTAAACCAAGGAAG+AGG - chr1.2:49304902-49304921 None:intergenic 40.0%
TTCTTCCTTGGTTGTGAGAA+AGG - chr1.2:49305686-49305705 None:intergenic 40.0%
TTGGTTGTGAGAAAGGTGAA+AGG - chr1.2:49305679-49305698 None:intergenic 40.0%
TTTCACCTTTCTCACAACCA+AGG + chr1.2:49305678-49305697 MS.gene45113:CDS 40.0%
! ATGATCAAAAGGCACGAAAC+CGG - chr1.2:49305914-49305933 None:intergenic 40.0%
! GAAACGATGGCACTGAAATT+TGG - chr1.2:49305748-49305767 None:intergenic 40.0%
! GGGTAATTTTTCCGATGGTT+CGG + chr1.2:49306147-49306166 MS.gene45113:CDS 40.0%
! GGTAATTTTTCCGATGGTTC+GGG + chr1.2:49306148-49306167 MS.gene45113:CDS 40.0%
! TTTTCCCTCGTTTGATTACG+CGG + chr1.2:49304601-49304620 MS.gene45113:CDS 40.0%
!! CCAAAATGTTCTGAAGAGGA+GGG - chr1.2:49304631-49304650 None:intergenic 40.0%
!! GTGTTTTTGAGAGCGGAAAA+TGG + chr1.2:49304779-49304798 MS.gene45113:CDS 40.0%
!! TGTTGCTCGGTGAGAATTTT+TGG - chr1.2:49306086-49306105 None:intergenic 40.0%
AAGACCATAATGAGCATGCC+TGG - chr1.2:49305842-49305861 None:intergenic 45.0%
AAGGTGAATTAGGCCAGAGA+AGG - chr1.2:49305245-49305264 None:intergenic 45.0%
AGAAAGCTGGCAGACATGTT+TGG + chr1.2:49306358-49306377 MS.gene45113:CDS 45.0%
AGAAGCCTCCAAGGTGAATT+AGG - chr1.2:49305255-49305274 None:intergenic 45.0%
AGACGAATCCTCGGTTTCAA+AGG - chr1.2:49305172-49305191 None:intergenic 45.0%
AGACTGAGTAGAACTTGCCA+TGG - chr1.2:49306016-49306035 None:intergenic 45.0%
AGCAGTCAAACACATTGGAG+AGG + chr1.2:49306432-49306451 MS.gene45113:CDS 45.0%
AGGATCCATTACCATTAGGG+TGG + chr1.2:49304855-49304874 MS.gene45113:CDS 45.0%
AGGTGAATTAGGCCAGAGAA+GGG - chr1.2:49305244-49305263 None:intergenic 45.0%
AGTTCAGGCAGGTCTATTTC+CGG + chr1.2:49305888-49305907 MS.gene45113:CDS 45.0%
ATAGGTTGCTCTGACCTAGA+AGG - chr1.2:49305778-49305797 None:intergenic 45.0%
ATCACAAGAAGCTTCTTGCC+GGG + chr1.2:49304747-49304766 MS.gene45113:CDS 45.0%
ATCGTCTCAGCACAATACCT+AGG - chr1.2:49304582-49304601 None:intergenic 45.0%
ATGCAGATTCGATGGTGTTC+TGG + chr1.2:49305129-49305148 MS.gene45113:CDS 45.0%
ATGTAAGAAGGGTGAGTCCA+TGG + chr1.2:49305618-49305637 MS.gene45113:CDS 45.0%
CCATTGGAAACTCTCACTAG+AGG - chr1.2:49306209-49306228 None:intergenic 45.0%
CCTCTAGTGAGAGTTTCCAA+TGG + chr1.2:49306206-49306225 MS.gene45113:CDS 45.0%
CGAAGAAACGGAAGCAAGTT+TGG + chr1.2:49306243-49306262 MS.gene45113:CDS 45.0%
CGCGGTTATCCTTATACCAT+TGG - chr1.2:49306225-49306244 None:intergenic 45.0%
CTCTGACCTAGAAGGTTACT+AGG - chr1.2:49305770-49305789 None:intergenic 45.0%
CTTGTTCCTTTGGGTGGAAA+TGG + chr1.2:49304436-49304455 MS.gene45113:intron 45.0%
GAATATGACTGGGAGGGAAA+AGG + chr1.2:49304982-49305001 MS.gene45113:CDS 45.0%
GCAGATTATGACACTGTTGG+AGG + chr1.2:49304474-49304493 MS.gene45113:intron 45.0%
GCTGCAGATTATGACACTGT+TGG + chr1.2:49304471-49304490 MS.gene45113:intron 45.0%
GGAAGCAAGTTTGGAGAGTA+CGG + chr1.2:49306252-49306271 MS.gene45113:CDS 45.0%
GGATTCCACCCTAATGGTAA+TGG - chr1.2:49304863-49304882 None:intergenic 45.0%
GGCTAATAAGCAACCGTTTG+AGG + chr1.2:49305041-49305060 MS.gene45113:intron 45.0%
GTGCTCTACCGTGATATATC+TGG + chr1.2:49306409-49306428 MS.gene45113:CDS 45.0%
TCCATACCATTTCCACCCAA+AGG - chr1.2:49304445-49304464 None:intergenic 45.0%
TCCTTCAGCGGTAACTTTAG+CGG + chr1.2:49305020-49305039 MS.gene45113:intron 45.0%
TCCTTTGGGTGGAAATGGTA+TGG + chr1.2:49304441-49304460 MS.gene45113:intron 45.0%
TCGAATCAGAAGATGTCGGT+CGG + chr1.2:49306293-49306312 MS.gene45113:CDS 45.0%
TCTCCACCTCAGTAAAGTTC+AGG + chr1.2:49305873-49305892 MS.gene45113:CDS 45.0%
TCTGATGCTAACAATGGTGG+AGG + chr1.2:49304546-49304565 MS.gene45113:CDS 45.0%
TTCTCTGGCCTAATTCACCT+TGG + chr1.2:49305244-49305263 MS.gene45113:CDS 45.0%
TTTATAGAGGAACACCGAGG+CGG + chr1.2:49304690-49304709 MS.gene45113:CDS 45.0%
! AACTTGCTTCCGTTTCTTCG+CGG - chr1.2:49306243-49306262 None:intergenic 45.0%
! CCCTCCTCTTCAGAACATTT+TGG + chr1.2:49304628-49304647 MS.gene45113:CDS 45.0%
! CTTAAGCTTGTTCCTTTGGG+TGG + chr1.2:49304430-49304449 MS.gene45113:intron 45.0%
! GAGTACTTTCGGGTAGACAA+CGG - chr1.2:49305802-49305821 None:intergenic 45.0%
! GTGGAGGTTTTTCTGTTCCT+AGG + chr1.2:49304562-49304581 MS.gene45113:intron 45.0%
! TCTGGAGCAGTCAAACACAT+TGG + chr1.2:49306427-49306446 MS.gene45113:CDS 45.0%
! TTTCGGGTAGACAACGGAAT+AGG - chr1.2:49305796-49305815 None:intergenic 45.0%
!! AATGTTCTGAAGAGGAGGGT+CGG - chr1.2:49304627-49304646 None:intergenic 45.0%
!! AGTTTGTTGATCCCCTTCTC+TGG + chr1.2:49305229-49305248 MS.gene45113:CDS 45.0%
!! GCCAAAATGTTCTGAAGAGG+AGG - chr1.2:49304632-49304651 None:intergenic 45.0%
!! GGCATCTTTTGACTACTGGT+TGG + chr1.2:49304711-49304730 MS.gene45113:CDS 45.0%
!! GGTAAGACTTGTTGATGACG+AGG - chr1.2:49306178-49306197 None:intergenic 45.0%
!! TACGCCAGAGTTTTGTGTGA+AGG + chr1.2:49305086-49305105 MS.gene45113:CDS 45.0%
AACTCAGGCGCGAATATGAC+TGG + chr1.2:49304971-49304990 MS.gene45113:CDS 50.0%
AAGAAGGGTGAGTCCATGGT+TGG + chr1.2:49305622-49305641 MS.gene45113:CDS 50.0%
AAGATGTTCATGGCGAGACG+TGG + chr1.2:49304654-49304673 MS.gene45113:CDS 50.0%
ACTCAGGCGCGAATATGACT+GGG + chr1.2:49304972-49304991 MS.gene45113:CDS 50.0%
ACTGAAATTTGGCCGTCGAG+GGG - chr1.2:49305737-49305756 None:intergenic 50.0%
ATGGCGAGACGTGGAAGTTT+AGG + chr1.2:49304663-49304682 MS.gene45113:CDS 50.0%
CAACTATGGCATGCTTGTGC+AGG + chr1.2:49304226-49304245 MS.gene45113:CDS 50.0%
CACCTCAGTAAAGTTCAGGC+AGG + chr1.2:49305877-49305896 MS.gene45113:CDS 50.0%
CACTGAAATTTGGCCGTCGA+GGG - chr1.2:49305738-49305757 None:intergenic 50.0%
CCAACAGGATTCCACCCTAA+TGG - chr1.2:49304869-49304888 None:intergenic 50.0%
CCATTAGGGTGGAATCCTGT+TGG + chr1.2:49304866-49304885 MS.gene45113:CDS 50.0%
CTGAGGTGGAGATCCGATAT+CGG - chr1.2:49305865-49305884 None:intergenic 50.0%
CTGCCTGAACTTTACTGAGG+TGG - chr1.2:49305879-49305898 None:intergenic 50.0%
GACCTGCCTGAACTTTACTG+AGG - chr1.2:49305882-49305901 None:intergenic 50.0%
GCACAAGCATGCCATAGTTG+AGG - chr1.2:49304226-49304245 None:intergenic 50.0%
GCATGTTCAGCATGACCTTG+AGG - chr1.2:49304298-49304317 None:intergenic 50.0%
GGAAAAGGTTAGGCCAGAAG+CGG + chr1.2:49304997-49305016 MS.gene45113:CDS 50.0%
GGCTGATCCTGAAACAGATG+AGG + chr1.2:49304396-49304415 MS.gene45113:CDS 50.0%
GGTCATGCTGAACATGCATG+TGG + chr1.2:49304301-49304320 MS.gene45113:CDS 50.0%
GGTGAATTAGGCCAGAGAAG+GGG - chr1.2:49305243-49305262 None:intergenic 50.0%
GTAGTCAAAAGATGCCGCCT+CGG - chr1.2:49304707-49304726 None:intergenic 50.0%
GTTACCTGAAGAAGCCTCCA+AGG - chr1.2:49305264-49305283 None:intergenic 50.0%
TCACAAGAAGCTTCTTGCCG+GGG + chr1.2:49304748-49304767 MS.gene45113:CDS 50.0%
TCTGGCCTAATTCACCTTGG+AGG + chr1.2:49305247-49305266 MS.gene45113:CDS 50.0%
TGACTGGGAGGGAAAAGGTT+AGG + chr1.2:49304987-49305006 MS.gene45113:CDS 50.0%
TGCATTGCCGCCTCTACTAA+AGG - chr1.2:49305114-49305133 None:intergenic 50.0%
TGGCCGAAAAGAACAAGCTG+AGG - chr1.2:49306066-49306085 None:intergenic 50.0%
TTCACCTTGGAGGCTTCTTC+AGG + chr1.2:49305257-49305276 MS.gene45113:CDS 50.0%
!! AGGCGGCATCTTTTGACTAC+TGG + chr1.2:49304707-49304726 MS.gene45113:CDS 50.0%
!! ATGCCAGCAGGAGTACTTTC+GGG - chr1.2:49305812-49305831 None:intergenic 50.0%
!! CAAGATGGCCTTTGAAACCG+AGG + chr1.2:49305161-49305180 MS.gene45113:CDS 50.0%
!! CATGCCAGCAGGAGTACTTT+CGG - chr1.2:49305813-49305832 None:intergenic 50.0%
!! TGTGAAGGCGCCTTTAGTAG+AGG + chr1.2:49305101-49305120 MS.gene45113:CDS 50.0%
!!! CTCTCACTAGAGGAGCGTTT+TGG - chr1.2:49306199-49306218 None:intergenic 50.0%
AAGTACTCCTGCTGGCATGC+AGG + chr1.2:49305814-49305833 MS.gene45113:intron 55.0%
ACGAGGAGTTCCCGAACCAT+CGG - chr1.2:49306161-49306180 None:intergenic 55.0%
ACGCGTAATGCACAGTGCGA+AGG - chr1.2:49305387-49305406 None:intergenic 55.0%
AGGCGCGAATATGACTGGGA+GGG + chr1.2:49304976-49304995 MS.gene45113:CDS 55.0%
AGGCGGCAATGCAGATTCGA+TGG + chr1.2:49305121-49305140 MS.gene45113:CDS 55.0%
CTATGGCATGCTTGTGCAGG+TGG + chr1.2:49304229-49304248 MS.gene45113:CDS 55.0%
CTGAAATTTGGCCGTCGAGG+GGG - chr1.2:49305736-49305755 None:intergenic 55.0%
GCACTGAAATTTGGCCGTCG+AGG - chr1.2:49305739-49305758 None:intergenic 55.0%
GCATGCTTGTGCAGGTGGAA+TGG + chr1.2:49304234-49304253 MS.gene45113:CDS 55.0%
GCCGCTAAAGTTACCGCTGA+AGG - chr1.2:49305024-49305043 None:intergenic 55.0%
GGAGCCAGGCATGCTCATTA+TGG + chr1.2:49305835-49305854 MS.gene45113:intron 55.0%
GGCGCCTTCACACAAAACTC+TGG - chr1.2:49305093-49305112 None:intergenic 55.0%
GGGATTCGACGAGCGAAGAA+GGG + chr1.2:49304815-49304834 MS.gene45113:CDS 55.0%
TCGGCCGCGTAATCAAACGA+GGG - chr1.2:49304608-49304627 None:intergenic 55.0%
TGGGATTCGACGAGCGAAGA+AGG + chr1.2:49304814-49304833 MS.gene45113:CDS 55.0%
! CGACGAGCGAAGAAGGGTAT+TGG + chr1.2:49304821-49304840 MS.gene45113:CDS 55.0%
! TCAAAAGGCACGAAACCGGC+CGG - chr1.2:49305910-49305929 None:intergenic 55.0%
!! CGAGCGAAGAAGGGTATTGG+TGG + chr1.2:49304824-49304843 MS.gene45113:CDS 55.0%
!! CTACCCGAAAGTACTCCTGC+TGG + chr1.2:49305806-49305825 MS.gene45113:intron 55.0%
!! GAAGGCGCCTTTAGTAGAGG+CGG + chr1.2:49305104-49305123 MS.gene45113:CDS 55.0%
!! GCGAAGAAGGGTATTGGTGG+TGG + chr1.2:49304827-49304846 MS.gene45113:CDS 55.0%
!! GGGTATTGGTGGTGGACATG+AGG + chr1.2:49304835-49304854 MS.gene45113:CDS 55.0%
AACTCTGGCGTACTTGCGCG+AGG - chr1.2:49305078-49305097 None:intergenic 60.0%
ACTCTGGCGTACTTGCGCGA+GGG - chr1.2:49305077-49305096 None:intergenic 60.0%
CACCACGATTTCCCCCTCGA+CGG + chr1.2:49305722-49305741 MS.gene45113:CDS 60.0%
CAGGCAGGTCTATTTCCGGC+CGG + chr1.2:49305892-49305911 MS.gene45113:CDS 60.0%
CAGGCGCGAATATGACTGGG+AGG + chr1.2:49304975-49304994 MS.gene45113:CDS 60.0%
GTCGGCCGCGTAATCAAACG+AGG - chr1.2:49304609-49304628 None:intergenic 60.0%
TACCGCTGAAGGACCGCTTC+TGG - chr1.2:49305013-49305032 None:intergenic 60.0%
TCGAGGGGGAAATCGTGGTG+TGG - chr1.2:49305722-49305741 None:intergenic 60.0%
GGCCAGAAGCGGTCCTTCAG+CGG + chr1.2:49305008-49305027 MS.gene45113:intron 65.0%
CCTGCTGGCATGCAGGAGCC+AGG + chr1.2:49305821-49305840 MS.gene45113:intron 70.0%
CCTGGCTCCTGCATGCCAGC+AGG - chr1.2:49305824-49305843 None:intergenic 70.0%
GGCCGTCGAGGGGGAAATCG+TGG - chr1.2:49305727-49305746 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49304121 49306464 49304121 ID=MS.gene45113
chr1.2 mRNA 49304121 49306464 49304121 ID=MS.gene45113.t1;Parent=MS.gene45113
chr1.2 exon 49304121 49304448 49304121 ID=MS.gene45113.t1.exon1;Parent=MS.gene45113.t1
chr1.2 CDS 49304121 49304448 49304121 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
chr1.2 exon 49304478 49304567 49304478 ID=MS.gene45113.t1.exon2;Parent=MS.gene45113.t1
chr1.2 CDS 49304478 49304567 49304478 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
chr1.2 exon 49304597 49305018 49304597 ID=MS.gene45113.t1.exon3;Parent=MS.gene45113.t1
chr1.2 CDS 49304597 49305018 49304597 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
chr1.2 exon 49305051 49305278 49305051 ID=MS.gene45113.t1.exon4;Parent=MS.gene45113.t1
chr1.2 CDS 49305051 49305278 49305051 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
chr1.2 exon 49305587 49305800 49305587 ID=MS.gene45113.t1.exon5;Parent=MS.gene45113.t1
chr1.2 CDS 49305587 49305800 49305587 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
chr1.2 exon 49305836 49306031 49305836 ID=MS.gene45113.t1.exon6;Parent=MS.gene45113.t1
chr1.2 CDS 49305836 49306031 49305836 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
chr1.2 exon 49306129 49306464 49306129 ID=MS.gene45113.t1.exon7;Parent=MS.gene45113.t1
chr1.2 CDS 49306129 49306464 49306129 ID=cds.MS.gene45113.t1;Parent=MS.gene45113.t1
Gene Sequence

>MS.gene45113

AAATTTTGCAGTGAAAGTTTTTTGAAGATGAATATATTTATGGATTCAAGAGATAATAACAATAATAACAATTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTTCACCTTTGATTCCATGCAAAGTTTTATCTATTAAGTATATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGGGTGGAAATGGTATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCTGAGACGATTTTCCCTCGTTTGATTACGCGGCCGACCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGAACACCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCGATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAATAACAATGGTTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAGGTTAGGCCAGAAGCGGTCCTTCAGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTATTTACTACCCTCGCGCAAGTACGCCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTAACACCATATTTTATTAAATTTGATGTCAATTAACAGAACATAAAATTGCATAATACTTAAATATGGTAATCTTCTCTCTTGCTAATCTTTAATTTATGTTATCCTTCGCACTGTGCATTACGCGTACACGTGAGTTACCACTTGATTACTAAATTAATGAACTCTGATGTTGTTTGTTAATCCATTTAAGAATGTGCTTCTGTTATTTTGTTACCTGTTGAGTTTTGTATGATTTCATTTGATAGGATCATAGGAATATTTGCATTGTGTCTACTCATAATAAGTAGTATTATGATATTTTGTAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTAAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCTCCACACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCACGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCAAAGAAATTCAACGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCCAAAAATTCTCACCGAGCAACAAATCTCTAATGACCATTCATCAGATGGAATACCAATAAAATGGGTAATTTTTCCGATGGTTCGGGAACTCCTCGTCATCAACAAGTCTTACCAAAACGCTCCTCTAGTGAGAGTTTCCAATGGTATAAGGATAACCGCGAAGAAACGGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGGACAATTGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGTCGCGTGCTCTACCGTGATATATCTGGAGCAGTCAAACACATTGGAGAGGAACCATTCAG
Protein sequence

>MS.gene45113.t1

KFCSESFLKMNIFMDSRDNNNNNNSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVLSIKYMADPETDEVYAKLKLVPLDYDTVGGNENQDKPVSFAKTLTQSDANNGGDDFPSFDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNNNNGLNSGANMTGREKVRPEAQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSTSENVSCLLSMASSTQWNTNKMGNFSDGSGTPRHQQVLPKRSSSESFQWYKDNREETEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEEPF