Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45419.t1 | XP_003626830.1 | 96.9 | 196 | 6 | 0 | 1 | 196 | 11 | 206 | 7.90E-103 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45419.t1 | O04905 | 84.1 | 195 | 29 | 1 | 3 | 197 | 8 | 200 | 1.6e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45419.t1 | B7FMF1 | 96.9 | 196 | 6 | 0 | 1 | 196 | 11 | 206 | 5.7e-103 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057144 | MS.gene45419 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene057145 | MS.gene45419 | 0.809152 | 2.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057156 | MS.gene45419 | PPI |
| MS.gene033347 | MS.gene45419 | PPI |
| MS.gene011389 | MS.gene45419 | PPI |
| MS.gene065461 | MS.gene45419 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45419.t1 | MTR_8g009520 | 96.939 | 196 | 6 | 0 | 1 | 196 | 11 | 206 | 1.48e-140 | 391 |
| MS.gene45419.t1 | MTR_4g035850 | 62.570 | 179 | 67 | 0 | 13 | 191 | 33 | 211 | 2.22e-80 | 239 |
| MS.gene45419.t1 | MTR_5g068940 | 62.570 | 179 | 67 | 0 | 13 | 191 | 33 | 211 | 3.40e-80 | 239 |
| MS.gene45419.t1 | MTR_4g035850 | 62.222 | 180 | 68 | 0 | 12 | 191 | 55 | 234 | 6.00e-80 | 239 |
| MS.gene45419.t1 | MTR_2g461290 | 27.751 | 209 | 121 | 4 | 10 | 191 | 71 | 276 | 8.87e-24 | 99.0 |
| MS.gene45419.t1 | MTR_4g035170 | 34.375 | 128 | 81 | 2 | 9 | 134 | 85 | 211 | 1.79e-23 | 95.9 |
| MS.gene45419.t1 | MTR_4g103800 | 26.066 | 211 | 123 | 4 | 14 | 191 | 32 | 242 | 1.00e-19 | 84.7 |
| MS.gene45419.t1 | MTR_1g067050 | 25.888 | 197 | 101 | 4 | 17 | 170 | 59 | 253 | 5.37e-16 | 75.1 |
| MS.gene45419.t1 | MTR_7g100530 | 25.490 | 204 | 110 | 4 | 8 | 170 | 34 | 236 | 5.43e-15 | 72.4 |
| MS.gene45419.t1 | MTR_4g103800 | 32.184 | 87 | 58 | 1 | 14 | 99 | 32 | 118 | 6.63e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45419.t1 | AT5G26667 | 83.673 | 196 | 30 | 1 | 2 | 197 | 7 | 200 | 2.20e-122 | 345 |
| MS.gene45419.t1 | AT5G26667 | 83.673 | 196 | 30 | 1 | 2 | 197 | 7 | 200 | 2.22e-122 | 345 |
| MS.gene45419.t1 | AT5G26667 | 83.673 | 196 | 30 | 1 | 2 | 197 | 7 | 200 | 2.22e-122 | 345 |
| MS.gene45419.t1 | AT5G26667 | 83.673 | 196 | 30 | 1 | 2 | 197 | 7 | 200 | 2.22e-122 | 345 |
| MS.gene45419.t1 | AT3G60180 | 74.863 | 183 | 46 | 0 | 9 | 191 | 19 | 201 | 1.49e-104 | 300 |
| MS.gene45419.t1 | AT3G60180 | 74.863 | 183 | 46 | 0 | 9 | 191 | 19 | 201 | 1.49e-104 | 300 |
| MS.gene45419.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 9 | 191 | 51 | 233 | 3.34e-78 | 236 |
| MS.gene45419.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 9 | 191 | 51 | 233 | 3.34e-78 | 236 |
| MS.gene45419.t1 | AT3G60961 | 68.421 | 133 | 38 | 1 | 63 | 191 | 1 | 133 | 1.59e-65 | 199 |
| MS.gene45419.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 10 | 191 | 78 | 283 | 5.41e-27 | 108 |
| MS.gene45419.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 10 | 191 | 78 | 283 | 5.91e-27 | 108 |
| MS.gene45419.t1 | AT5G47840 | 30.144 | 209 | 116 | 4 | 10 | 191 | 63 | 268 | 1.99e-26 | 103 |
| MS.gene45419.t1 | AT5G47840 | 37.008 | 127 | 77 | 2 | 10 | 134 | 63 | 188 | 7.41e-26 | 101 |
| MS.gene45419.t1 | AT5G63400 | 27.488 | 211 | 120 | 4 | 14 | 191 | 36 | 246 | 2.03e-20 | 86.7 |
| MS.gene45419.t1 | AT5G50370 | 27.723 | 202 | 112 | 5 | 13 | 181 | 37 | 237 | 6.87e-18 | 80.1 |
| MS.gene45419.t1 | AT2G37250 | 25.238 | 210 | 112 | 3 | 17 | 183 | 57 | 264 | 4.88e-16 | 75.5 |
| MS.gene45419.t1 | AT2G39270 | 27.411 | 197 | 98 | 4 | 17 | 170 | 70 | 264 | 3.26e-15 | 73.2 |
| MS.gene45419.t1 | AT5G50370 | 27.072 | 181 | 98 | 5 | 13 | 160 | 37 | 216 | 6.63e-14 | 68.9 |
| MS.gene45419.t1 | AT5G63400 | 31.200 | 125 | 82 | 2 | 14 | 134 | 36 | 160 | 8.66e-14 | 67.8 |
Find 46 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8.3:+79523982 | MS.gene45419:CDS |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8.3:-79524313 | None:intergenic |
| TTATGACTTGTCTGACAAAT+TGG | 0.195145 | 8.3:+79525752 | MS.gene45419:CDS |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8.3:+79523919 | MS.gene45419:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8.3:-79524606 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8.3:+79524395 | MS.gene45419:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8.3:-79523911 | None:intergenic |
| GTTTACTTGTTTAGCATCAA+TGG | 0.365098 | 8.3:+79525711 | MS.gene45419:CDS |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8.3:+79524753 | MS.gene45419:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8.3:+79523249 | MS.gene45419:CDS |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8.3:-79524590 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8.3:-79524605 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8.3:+79523970 | MS.gene45419:CDS |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8.3:+79524599 | MS.gene45419:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8.3:-79524951 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8.3:+79523873 | MS.gene45419:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8.3:+79524342 | MS.gene45419:CDS |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8.3:+79524815 | MS.gene45419:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8.3:+79524766 | MS.gene45419:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8.3:+79523983 | MS.gene45419:CDS |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8.3:+79523940 | MS.gene45419:CDS |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8.3:+79523880 | MS.gene45419:intron |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | 8.3:+79523207 | None:intergenic |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8.3:+79524619 | MS.gene45419:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8.3:+79523886 | MS.gene45419:intron |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8.3:-79524579 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8.3:+79524311 | MS.gene45419:CDS |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8.3:-79524809 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8.3:+79523874 | MS.gene45419:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8.3:-79524344 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8.3:-79523912 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8.3:+79524814 | MS.gene45419:CDS |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8.3:-79523966 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8.3:-79524348 | None:intergenic |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8.3:+79524439 | MS.gene45419:CDS |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8.3:+79523957 | MS.gene45419:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8.3:-79524808 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8.3:-79523249 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8.3:+79524953 | MS.gene45419:CDS |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8.3:+79524941 | MS.gene45419:CDS |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8.3:-79524439 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8.3:+79524938 | MS.gene45419:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8.3:+79524829 | MS.gene45419:CDS |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8.3:+79524626 | MS.gene45419:CDS |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8.3:+79524371 | MS.gene45419:CDS |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8.3:-79523951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATGATAAAGTAAA+AGG | - | chr8.3:79525271-79525290 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | - | chr8.3:79525270-79525289 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | + | chr8.3:79525429-79525448 | MS.gene45419:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | + | chr8.3:79525638-79525657 | MS.gene45419:intron | 10.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | + | chr8.3:79524815-79524834 | MS.gene45419:CDS | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | + | chr8.3:79523859-79523878 | MS.gene45419:intron | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | + | chr8.3:79525637-79525656 | MS.gene45419:intron | 15.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | + | chr8.3:79524395-79524414 | MS.gene45419:CDS | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | + | chr8.3:79524157-79524176 | MS.gene45419:intron | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | - | chr8.3:79524069-79524088 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | + | chr8.3:79525343-79525362 | MS.gene45419:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | - | chr8.3:79524811-79524830 | None:intergenic | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | + | chr8.3:79524814-79524833 | MS.gene45419:CDS | 20.0% |
| !! | GCTTATTTATGTTTATCTTA+AGG | - | chr8.3:79523636-79523655 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | - | chr8.3:79524070-79524089 | None:intergenic | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | - | chr8.3:79525173-79525192 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | + | chr8.3:79525059-79525078 | MS.gene45419:intron | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | - | chr8.3:79523381-79523400 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | - | chr8.3:79523998-79524017 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTACAATGCATTA+TGG | + | chr8.3:79525289-79525308 | MS.gene45419:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | - | chr8.3:79525058-79525077 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | + | chr8.3:79524072-79524091 | MS.gene45419:intron | 20.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | + | chr8.3:79523471-79523490 | MS.gene45419:intron | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | - | chr8.3:79523757-79523776 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | + | chr8.3:79524721-79524740 | MS.gene45419:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | + | chr8.3:79524311-79524330 | MS.gene45419:CDS | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | - | chr8.3:79524659-79524678 | None:intergenic | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | + | chr8.3:79524164-79524183 | MS.gene45419:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | + | chr8.3:79523478-79523497 | MS.gene45419:intron | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | - | chr8.3:79523331-79523350 | None:intergenic | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | + | chr8.3:79525475-79525494 | MS.gene45419:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | - | chr8.3:79524812-79524831 | None:intergenic | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | - | chr8.3:79523756-79523775 | None:intergenic | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | + | chr8.3:79524722-79524741 | MS.gene45419:intron | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | - | chr8.3:79524660-79524679 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | - | chr8.3:79524582-79524601 | None:intergenic | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | + | chr8.3:79524165-79524184 | MS.gene45419:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | - | chr8.3:79524316-79524335 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | + | chr8.3:79523803-79523822 | MS.gene45419:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | - | chr8.3:79523239-79523258 | None:intergenic | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | - | chr8.3:79524704-79524723 | None:intergenic | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | + | chr8.3:79523865-79523884 | MS.gene45419:intron | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | - | chr8.3:79524996-79525015 | None:intergenic | 25.0% |
| ACGACAACATTGAAACAATA+AGG | + | chr8.3:79524753-79524772 | MS.gene45419:CDS | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | + | chr8.3:79525447-79525466 | MS.gene45419:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | - | chr8.3:79525686-79525705 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | + | chr8.3:79523552-79523571 | MS.gene45419:intron | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | - | chr8.3:79523292-79523311 | None:intergenic | 30.0% | |
| ATTTCAACTATGGATGCATT+TGG | - | chr8.3:79523663-79523682 | None:intergenic | 30.0% | |
| CCAACTGGTATAATTGTATT+CGG | + | chr8.3:79525573-79525592 | MS.gene45419:intron | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | + | chr8.3:79524536-79524555 | MS.gene45419:intron | 30.0% | |
| CTATAAACAATCAGTGAAAC+AGG | - | chr8.3:79524045-79524064 | None:intergenic | 30.0% | |
| GATGCATTTAGGAAATTAGA+AGG | - | chr8.3:79524535-79524554 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | + | chr8.3:79523691-79523710 | MS.gene45419:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | + | chr8.3:79523553-79523572 | MS.gene45419:intron | 30.0% | |
| GTTTACTTGTTTAGCATCAA+TGG | + | chr8.3:79525711-79525730 | MS.gene45419:CDS | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | - | chr8.3:79523691-79523710 | None:intergenic | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | - | chr8.3:79523306-79523325 | None:intergenic | 30.0% | |
| TTTCAGTCCAAAAAATGAGA+AGG | + | chr8.3:79524986-79525005 | MS.gene45419:CDS | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | + | chr8.3:79524705-79524724 | MS.gene45419:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | + | chr8.3:79523920-79523939 | MS.gene45419:CDS | 30.0% |
| ! | GACATTACATTACCTGTTTT+AGG | + | chr8.3:79524914-79524933 | MS.gene45419:intron | 30.0% |
| ! | GTTTTACAATGCATTATGGA+CGG | + | chr8.3:79525293-79525312 | MS.gene45419:intron | 30.0% |
| ! | TTATGACTTGTCTGACAAAT+TGG | + | chr8.3:79525752-79525771 | MS.gene45419:CDS | 30.0% |
| !! | AATAATGATAATGGTACAGG+TGG | + | chr8.3:79523868-79523887 | MS.gene45419:intron | 30.0% |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | + | chr8.3:79524085-79524104 | MS.gene45419:intron | 30.0% |
| !! | TCATTGTGCTGTTTAAAATC+AGG | - | chr8.3:79524292-79524311 | None:intergenic | 30.0% |
| !!! | CCGGCAATTAGTTTTATATT+TGG | - | chr8.3:79525478-79525497 | None:intergenic | 30.0% |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | - | chr8.3:79523603-79523622 | None:intergenic | 30.0% |
| AACAATAAGGAAGCGATTCA+AGG | + | chr8.3:79524766-79524785 | MS.gene45419:CDS | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | - | chr8.3:79523784-79523803 | None:intergenic | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | - | chr8.3:79523466-79523485 | None:intergenic | 35.0% | |
| ATGTTGATACACACAAGTCT+AGG | - | chr8.3:79525599-79525618 | None:intergenic | 35.0% | |
| CCGAATACAATTATACCAGT+TGG | - | chr8.3:79525576-79525595 | None:intergenic | 35.0% | |
| GCTGGTATACATTTCAACTA+TGG | - | chr8.3:79523673-79523692 | None:intergenic | 35.0% | |
| TGACAAATTGGAACTTCCTT+AGG | + | chr8.3:79525764-79525783 | MS.gene45419:CDS | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | - | chr8.3:79523914-79523933 | None:intergenic | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | - | chr8.3:79525623-79525642 | None:intergenic | 35.0% |
| ! | GCAAATGTTGTCGAACATTT+TGG | + | chr8.3:79523919-79523938 | MS.gene45419:CDS | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | + | chr8.3:79525558-79525577 | MS.gene45419:intron | 35.0% |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | + | chr8.3:79523518-79523537 | MS.gene45419:intron | 35.0% |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | - | chr8.3:79525508-79525527 | None:intergenic | 35.0% |
| ACAAGAAACTCACCAAGACA+TGG | - | chr8.3:79524876-79524895 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | + | chr8.3:79524331-79524350 | MS.gene45419:CDS | 40.0% | |
| ATAGTGTAGGGTCTATTACC+TGG | - | chr8.3:79524647-79524666 | None:intergenic | 40.0% | |
| CAATCAGTGAAACAGGACTA+CGG | - | chr8.3:79524038-79524057 | None:intergenic | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | - | chr8.3:79524351-79524370 | None:intergenic | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | - | chr8.3:79523467-79523486 | None:intergenic | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | - | chr8.3:79523252-79523271 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | + | chr8.3:79523249-79523268 | MS.gene45419:CDS | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | - | chr8.3:79524593-79524612 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | - | chr8.3:79524514-79524533 | None:intergenic | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | - | chr8.3:79524902-79524921 | None:intergenic | 40.0% | |
| GTTCGACAACATTTGCACAT+TGG | - | chr8.3:79523915-79523934 | None:intergenic | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | - | chr8.3:79524546-79524565 | None:intergenic | 40.0% | |
| TGTATCAACATGCCAACACT+AGG | + | chr8.3:79525608-79525627 | MS.gene45419:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | + | chr8.3:79524342-79524361 | MS.gene45419:CDS | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | - | chr8.3:79524929-79524948 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | + | chr8.3:79524892-79524911 | MS.gene45419:intron | 40.0% | |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | + | chr8.3:79523982-79524001 | MS.gene45419:CDS | 40.0% |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | + | chr8.3:79524775-79524794 | MS.gene45419:CDS | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | + | chr8.3:79524861-79524880 | MS.gene45419:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | + | chr8.3:79523983-79524002 | MS.gene45419:CDS | 40.0% |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | + | chr8.3:79523517-79523536 | MS.gene45419:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | + | chr8.3:79524953-79524972 | MS.gene45419:CDS | 40.0% |
| !!! | CCTATATTTTGATTGCCCAG+AGG | + | chr8.3:79524590-79524609 | MS.gene45419:CDS | 40.0% |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | + | chr8.3:79524928-79524947 | MS.gene45419:intron | 40.0% |
| ACGACTTCTTAGTAGGAACC+AGG | + | chr8.3:79524626-79524645 | MS.gene45419:CDS | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | - | chr8.3:79524347-79524366 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | + | chr8.3:79524371-79524390 | MS.gene45419:CDS | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | - | chr8.3:79524205-79524224 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | - | chr8.3:79524239-79524258 | None:intergenic | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | - | chr8.3:79524954-79524973 | None:intergenic | 45.0% | |
| GGACTACGGATCTATCACTA+CGG | - | chr8.3:79524024-79524043 | None:intergenic | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | - | chr8.3:79524608-79524627 | None:intergenic | 45.0% | |
| TCAACATGCCAACACTAGGA+AGG | + | chr8.3:79525612-79525631 | MS.gene45419:intron | 45.0% | |
| TGATTGCCCAGAGGAAGAAA+TGG | + | chr8.3:79524599-79524618 | MS.gene45419:CDS | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | + | chr8.3:79524829-79524848 | MS.gene45419:CDS | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | + | chr8.3:79524619-79524638 | MS.gene45419:CDS | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | + | chr8.3:79523529-79523548 | MS.gene45419:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | - | chr8.3:79523969-79523988 | None:intergenic | 45.0% |
| ! | TGATGGTTTTCCTCGCAATG+AGG | + | chr8.3:79524412-79524431 | MS.gene45419:CDS | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | + | chr8.3:79523873-79523892 | MS.gene45419:intron | 45.0% |
| CCACTCTCTCAAATGCTGCA+CGG | - | chr8.3:79524442-79524461 | None:intergenic | 50.0% | |
| CGTCTCTCCATTTCTTCCTC+TGG | - | chr8.3:79524609-79524628 | None:intergenic | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | - | chr8.3:79524200-79524219 | None:intergenic | 50.0% | |
| CTGCGAGCGGAAATCAAATC+TGG | + | chr8.3:79523970-79523989 | MS.gene45419:CDS | 50.0% | |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | - | chr8.3:79525497-79525516 | None:intergenic | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | + | chr8.3:79523874-79523893 | MS.gene45419:intron | 50.0% |
| ! | TGCATCATGGCTTTGCAGAC+TGG | + | chr8.3:79524549-79524568 | MS.gene45419:intron | 50.0% |
| CCGTGCAGCATTTGAGAGAG+TGG | + | chr8.3:79524439-79524458 | MS.gene45419:CDS | 55.0% | |
| GGGTTTACTCACCTCAGTGC+TGG | + | chr8.3:79523940-79523959 | MS.gene45419:CDS | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | + | chr8.3:79524938-79524957 | MS.gene45419:CDS | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | - | chr8.3:79524425-79524444 | None:intergenic | 55.0% |
| ! | TGGGTACCTTTTCCACTGCC+CGG | - | chr8.3:79523895-79523914 | None:intergenic | 55.0% |
| GCAGAAGGTCACCAGCACTG+AGG | - | chr8.3:79523954-79523973 | None:intergenic | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | + | chr8.3:79524941-79524960 | MS.gene45419:CDS | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | + | chr8.3:79523957-79523976 | MS.gene45419:CDS | 60.0% | |
| GGTGGTCCGGGCAGTGGAAA+AGG | + | chr8.3:79523886-79523905 | MS.gene45419:intron | 65.0% | |
| GGTACAGGTGGTCCGGGCAG+TGG | + | chr8.3:79523880-79523899 | MS.gene45419:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79523219 | 79525785 | 79523219 | ID=MS.gene45419 |
| chr8.3 | mRNA | 79523219 | 79525785 | 79523219 | ID=MS.gene45419.t1;Parent=MS.gene45419 |
| chr8.3 | exon | 79523219 | 79523270 | 79523219 | ID=MS.gene45419.t1.exon1;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79523219 | 79523270 | 79523219 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| chr8.3 | exon | 79523887 | 79524004 | 79523887 | ID=MS.gene45419.t1.exon2;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79523887 | 79524004 | 79523887 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| chr8.3 | exon | 79524304 | 79524460 | 79524304 | ID=MS.gene45419.t1.exon3;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79524304 | 79524460 | 79524304 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| chr8.3 | exon | 79524567 | 79524647 | 79524567 | ID=MS.gene45419.t1.exon4;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79524567 | 79524647 | 79524567 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| chr8.3 | exon | 79524743 | 79524850 | 79524743 | ID=MS.gene45419.t1.exon5;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79524743 | 79524850 | 79524743 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| chr8.3 | exon | 79524936 | 79525007 | 79524936 | ID=MS.gene45419.t1.exon6;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79524936 | 79525007 | 79524936 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| chr8.3 | exon | 79525705 | 79525785 | 79525705 | ID=MS.gene45419.t1.exon7;Parent=MS.gene45419.t1 |
| chr8.3 | CDS | 79525705 | 79525785 | 79525705 | ID=cds.MS.gene45419.t1;Parent=MS.gene45419.t1 |
| Gene Sequence |
| Protein sequence |
