AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45488

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45488.t1 MTR_2g096740 96.066 305 7 4 1 302 1 303 0.0 590
MS.gene45488.t1 MTR_2g096740 91.148 305 7 5 1 302 1 288 0.0 552
MS.gene45488.t1 MTR_4g063780 43.099 355 119 17 1 296 1 331 8.12e-62 199
MS.gene45488.t1 MTR_4g022370 40.549 328 108 17 1 261 1 308 1.61e-47 163
MS.gene45488.t1 MTR_7g059400 37.818 275 115 6 1 238 1 256 3.39e-43 151
MS.gene45488.t1 MTR_7g024670 52.500 160 45 5 1 146 1 143 1.98e-41 147
MS.gene45488.t1 MTR_8g068210 55.000 100 42 1 55 154 12 108 1.87e-32 122
MS.gene45488.t1 MTR_8g479350 62.069 87 29 1 78 164 68 150 2.19e-32 122
MS.gene45488.t1 MTR_3g077750 75.806 62 15 0 67 128 50 111 3.60e-31 119
MS.gene45488.t1 MTR_4g088580 68.919 74 18 1 79 147 56 129 3.80e-31 120
MS.gene45488.t1 MTR_8g015840 76.119 67 14 1 73 139 15 79 8.76e-31 115
MS.gene45488.t1 MTR_4g461080 76.923 65 14 1 67 130 17 81 1.28e-30 116
MS.gene45488.t1 MTR_2g093220 67.123 73 24 0 60 132 22 94 2.27e-30 116
MS.gene45488.t1 MTR_3g091820 71.642 67 19 0 67 133 32 98 2.32e-30 116
MS.gene45488.t1 MTR_5g031440 82.143 56 10 0 73 128 38 93 2.33e-30 117
MS.gene45488.t1 MTR_3g090430 70.149 67 20 0 68 134 41 107 7.80e-30 115
MS.gene45488.t1 MTR_8g079060 52.000 100 44 2 71 166 22 121 1.29e-29 112
MS.gene45488.t1 MTR_4g109980 86.538 52 7 0 77 128 39 90 1.48e-29 114
MS.gene45488.t1 MTR_2g059540 90.000 50 5 0 77 126 30 79 2.00e-28 108
MS.gene45488.t1 MTR_8g027295 72.581 62 17 0 75 136 21 82 3.63e-28 110
MS.gene45488.t1 MTR_2g014170 75.362 69 17 0 77 145 44 112 4.19e-28 110
MS.gene45488.t1 MTR_2g014060 84.314 51 8 0 79 129 26 76 2.08e-27 109
MS.gene45488.t1 MTR_1g077600 68.333 60 19 0 75 134 40 99 7.10e-27 106
MS.gene45488.t1 MTR_1g077600 68.333 60 19 0 75 134 40 99 8.18e-27 106
MS.gene45488.t1 MTR_4g089095 75.862 58 13 1 78 135 50 106 9.31e-27 106
MS.gene45488.t1 MTR_4g089095 75.862 58 13 1 78 135 16 72 1.05e-26 105
MS.gene45488.t1 MTR_1g056810 77.358 53 12 0 80 132 14 66 1.33e-26 106
MS.gene45488.t1 MTR_2g013370 62.162 74 20 2 61 134 36 101 1.89e-26 105
MS.gene45488.t1 MTR_5g041420 44.118 102 57 0 30 131 90 191 7.55e-26 104
MS.gene45488.t1 MTR_2g016030 56.410 78 30 1 64 141 37 110 1.00e-25 100
MS.gene45488.t1 MTR_6g012450 52.273 88 41 1 44 131 103 189 1.24e-25 106
MS.gene45488.t1 MTR_8g044220 51.190 84 41 0 58 141 98 181 3.34e-25 104
MS.gene45488.t1 MTR_6g027450 58.824 68 28 0 65 132 76 143 4.72e-24 100
MS.gene45488.t1 MTR_7g010950 61.538 65 25 0 67 131 124 188 6.88e-24 101
MS.gene45488.t1 MTR_3g435480 57.534 73 30 1 59 131 118 189 1.26e-23 100
MS.gene45488.t1 MTR_7g086780 59.701 67 27 0 65 131 86 152 1.36e-23 100
MS.gene45488.t1 MTR_5g041530 47.778 90 47 0 42 131 104 193 1.63e-23 99.4
MS.gene45488.t1 MTR_6g027460 56.716 67 29 0 65 131 83 149 2.72e-23 98.6
MS.gene45488.t1 MTR_4g082060 41.481 135 72 3 75 207 119 248 2.91e-23 99.4
MS.gene45488.t1 MTR_5g041380 47.126 87 45 1 45 131 95 180 3.84e-21 92.8
MS.gene45488.t1 MTR_5g041400 39.844 128 55 4 19 131 52 172 5.10e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45488.t1 AT3G55370 39.498 319 157 14 1 290 1 312 2.65e-47 161
MS.gene45488.t1 AT3G55370 42.975 242 114 9 1 224 1 236 1.77e-45 157
MS.gene45488.t1 AT3G55370 37.742 310 158 13 9 290 55 357 1.00e-40 145
MS.gene45488.t1 AT2G37590 51.351 148 55 4 1 134 1 145 1.65e-40 144
MS.gene45488.t1 AT2G28810 48.408 157 41 4 1 129 1 145 9.84e-38 137
MS.gene45488.t1 AT5G65590 72.500 80 17 1 65 139 23 102 8.18e-35 129
MS.gene45488.t1 AT5G02460 56.303 119 35 2 39 157 73 174 1.37e-34 130
MS.gene45488.t1 AT2G28810 61.702 94 24 1 36 129 47 128 7.18e-34 126
MS.gene45488.t1 AT1G07640 73.611 72 18 1 64 135 8 78 2.21e-33 124
MS.gene45488.t1 AT5G60200 65.333 75 26 0 71 145 48 122 5.18e-33 122
MS.gene45488.t1 AT1G07640 73.611 72 18 1 64 135 64 134 5.48e-33 124
MS.gene45488.t1 AT1G07640 73.611 72 18 1 64 135 72 142 7.78e-33 124
MS.gene45488.t1 AT1G51700 47.934 121 63 0 53 173 8 128 2.33e-32 119
MS.gene45488.t1 AT5G60850 67.532 77 23 1 77 151 50 126 2.75e-32 122
MS.gene45488.t1 AT5G66940 56.322 87 38 0 64 150 18 104 1.17e-30 115
MS.gene45488.t1 AT3G45610 63.889 72 26 0 68 139 30 101 2.68e-30 115
MS.gene45488.t1 AT5G62940 78.333 60 13 0 69 128 64 123 1.12e-29 116
MS.gene45488.t1 AT2G28510 78.333 60 13 0 77 136 47 106 1.41e-29 114
MS.gene45488.t1 AT4G21050 57.647 85 33 1 64 148 13 94 1.52e-29 112
MS.gene45488.t1 AT3G21270 86.792 53 7 0 78 130 29 81 2.10e-29 111
MS.gene45488.t1 AT3G52440 63.158 76 28 0 74 149 21 96 2.93e-29 112
MS.gene45488.t1 AT3G52440 63.158 76 28 0 74 149 40 115 3.62e-29 112
MS.gene45488.t1 AT1G28310 77.586 58 13 0 78 135 27 84 4.91e-29 113
MS.gene45488.t1 AT4G38000 73.770 61 16 0 72 132 35 95 7.25e-29 111
MS.gene45488.t1 AT1G28310 77.586 58 13 0 78 135 51 108 7.54e-29 113
MS.gene45488.t1 AT1G21340 71.667 60 17 0 76 135 36 95 1.93e-28 110
MS.gene45488.t1 AT3G50410 74.576 59 15 0 78 136 30 88 8.93e-28 108
MS.gene45488.t1 AT4G24060 66.667 66 22 0 67 132 42 107 1.25e-27 110
MS.gene45488.t1 AT3G61850 53.398 103 38 4 63 165 51 143 6.16e-27 107
MS.gene45488.t1 AT3G61850 53.398 103 38 4 63 165 51 143 6.16e-27 107
MS.gene45488.t1 AT3G61850 41.667 144 76 4 22 165 20 155 6.49e-27 107
MS.gene45488.t1 AT3G61850 53.398 103 38 4 63 165 51 143 8.39e-27 107
MS.gene45488.t1 AT3G61850 53.398 103 38 4 63 165 63 155 8.92e-27 107
MS.gene45488.t1 AT1G47655 68.182 66 20 1 62 126 12 77 2.55e-26 103
MS.gene45488.t1 AT4G00940 77.358 53 12 0 80 132 70 122 2.88e-25 102
MS.gene45488.t1 AT4G00940 77.358 53 12 0 80 132 70 122 2.88e-25 102
MS.gene45488.t1 AT4G00940 77.358 53 12 0 80 132 70 122 2.88e-25 102
MS.gene45488.t1 AT1G64620 68.852 61 19 0 67 127 38 98 3.74e-25 103
MS.gene45488.t1 AT2G34140 70.175 57 17 0 75 131 55 111 7.63e-25 98.6
MS.gene45488.t1 AT1G29160 70.175 57 17 0 75 131 59 115 1.19e-24 98.2
MS.gene45488.t1 AT2G46590 78.431 51 11 0 75 125 65 115 2.13e-24 101
MS.gene45488.t1 AT2G46590 78.431 51 11 0 75 125 77 127 2.35e-24 101
MS.gene45488.t1 AT5G39660 55.696 79 34 1 53 131 114 191 4.02e-24 102
MS.gene45488.t1 AT5G39660 55.696 79 34 1 53 131 114 191 4.02e-24 102
MS.gene45488.t1 AT5G39660 55.696 79 34 1 53 131 114 191 4.02e-24 102
MS.gene45488.t1 AT3G47500 72.222 54 15 0 78 131 110 163 7.56e-24 101
MS.gene45488.t1 AT1G69570 63.492 63 23 0 75 137 129 191 2.22e-23 99.4
MS.gene45488.t1 AT1G26790 56.164 73 29 1 59 131 95 164 2.42e-23 99.0
MS.gene45488.t1 AT5G62430 47.126 87 43 1 45 131 24 107 5.28e-23 96.7
MS.gene45488.t1 AT4G21040 35.955 178 74 8 80 218 27 203 1.60e-22 94.0
MS.gene45488.t1 AT4G21080 61.905 63 20 1 80 142 27 85 1.10e-21 92.0
MS.gene45488.t1 AT4G21030 49.296 71 32 1 70 140 17 83 1.99e-15 73.6

Find 73 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGACATGTAGGCGTTAT+TGG 0.219753 2.1:-6856127 MS.gene45488:CDS
TTGAACCAACAACTACTTCT+AGG 0.230645 2.1:-6855716 MS.gene45488:CDS
TTCTCATTACTATTTGATAT+TGG 0.260955 2.1:+6856008 None:intergenic
CAGTTTCCTTTCATGAATAA+TGG 0.306796 2.1:-6855789 MS.gene45488:CDS
TCAACAATTTCACTTTGAAA+TGG 0.326972 2.1:+6855735 None:intergenic
TGAAGAGATGTCATGTAATT+AGG 0.330958 2.1:+6855915 None:intergenic
TTATTCTCTGACATATTCAT+TGG 0.339957 2.1:+6855624 None:intergenic
CAACAATTTCACTTTGAAAT+GGG 0.353913 2.1:+6855736 None:intergenic
ACAACCATTACAATAATTCA+TGG 0.381419 2.1:-6855602 MS.gene45488:CDS
GTTGGAAACATGTTTCAAAT+TGG 0.387187 2.1:-6855873 MS.gene45488:CDS
GGAAGCAACTGATGTTGATT+TGG 0.388221 2.1:+6856386 None:intergenic
AGCTTGATCCGGTATCGAAC+CGG 0.392442 2.1:+6856316 None:intergenic
TCATGGTCTTGCATCTTCTT+CGG 0.406074 2.1:-6855571 MS.gene45488:CDS
CAAGAGGAGTTGAAGTTGAA+TGG 0.407718 2.1:+6855964 None:intergenic
ATGGTGCAGGCTCAATTATC+AGG 0.408827 2.1:-6856340 MS.gene45488:CDS
GATGCCTGCATCGGTTAAAT+CGG 0.412501 2.1:-6855682 MS.gene45488:CDS
TGTAATTAGGTCTATTAGTT+GGG 0.420123 2.1:+6855928 None:intergenic
ATGTAATTAGGTCTATTAGT+TGG 0.434589 2.1:+6855927 None:intergenic
CTTATTTAGATCCTCTCAAT+TGG 0.441172 2.1:-6856614 MS.gene45488:CDS
AAGGAGGAGTTGTGGATCAG+TGG 0.442180 2.1:-6855821 MS.gene45488:CDS
CATTCAACTTCAACTCCTCT+TGG 0.446006 2.1:-6855963 MS.gene45488:CDS
TATCAGGCCCGGTTCGATAC+CGG 0.455922 2.1:-6856324 MS.gene45488:CDS
CTACGACACCCTCCACCAAC+AGG 0.460856 2.1:+6856077 None:intergenic
AAAAGTGTCTTGGTTGAGAC+AGG 0.461945 2.1:+6856150 None:intergenic
TTGAGAGGATCTAAATAAGA+TGG 0.471759 2.1:+6856618 None:intergenic
TGACGTTCAAACTGGTCATC+AGG 0.474196 2.1:-6856276 MS.gene45488:CDS
GCAGCTCATGACGTTCAAAC+TGG 0.475021 2.1:-6856284 MS.gene45488:CDS
CAGTCCATGAATTATTGTAA+TGG 0.478494 2.1:+6855598 None:intergenic
TCAAGTACTGGTGGAGGAGA+AGG 0.484627 2.1:-6855840 MS.gene45488:CDS
ACATGTTTCCAACACCGAAC+CGG 0.484940 2.1:+6855883 None:intergenic
GGTGATTATAGTTCAAGTAC+TGG 0.489772 2.1:-6855852 MS.gene45488:CDS
TGAACCAACAACTACTTCTA+GGG 0.497338 2.1:-6855715 MS.gene45488:CDS
GCCTGAGCTTGAGCTTGATC+CGG 0.498212 2.1:+6856305 None:intergenic
TGTTCCGATTTAACCGATGC+AGG 0.498710 2.1:+6855678 None:intergenic
CTTCAGAATCTGAACCGGTT+CGG 0.507338 2.1:-6855897 MS.gene45488:CDS
CATCTCTTCAGAATCTGAAC+CGG 0.507412 2.1:-6855902 MS.gene45488:CDS
AATCTGAACCGGTTCGGTGT+TGG 0.507539 2.1:-6855891 MS.gene45488:CDS
TACTACTTTGATGCCTGCAT+CGG 0.514344 2.1:-6855691 MS.gene45488:CDS
GTAACCCTAGAAGTAGTTGT+TGG 0.518165 2.1:+6855711 None:intergenic
TTAAGAAATGTTCCTGTTGG+TGG 0.525025 2.1:-6856089 MS.gene45488:CDS
ACCGGATCAAGCTCAAGCTC+AGG 0.531426 2.1:-6856306 MS.gene45488:CDS
CATGTCTTGCAAAAGTGTCT+TGG 0.535988 2.1:+6856140 None:intergenic
TCATCACAGCCACATGGTGC+AGG 0.545230 2.1:-6856353 MS.gene45488:CDS
TCAAAACCATTATTCATGAA+AGG 0.546534 2.1:+6855783 None:intergenic
CACTTCAAAGCTGTCTCTGA+AGG 0.551798 2.1:+6856224 None:intergenic
AGAAATGTTCCTGTTGGTGG+AGG 0.558097 2.1:-6856086 MS.gene45488:CDS
CTTACTTGCTGCCAATTGAG+AGG 0.568314 2.1:+6856603 None:intergenic
AAATCGGAACACAACGGAGG+AGG 0.573191 2.1:-6855666 MS.gene45488:CDS
GCATTAAGAAATGTTCCTGT+TGG 0.573758 2.1:-6856092 MS.gene45488:CDS
GCTTGATCCGGTATCGAACC+GGG 0.575393 2.1:+6856317 None:intergenic
GCAGGCTCAATTATCAGGCC+CGG 0.575596 2.1:-6856335 MS.gene45488:CDS
AAGGTGGTGGTAACTTAGCT+TGG 0.577015 2.1:+6856243 None:intergenic
AGTACTGGTGGAGGAGAAGG+AGG 0.578007 2.1:-6855837 MS.gene45488:CDS
AAAGCTGTCTCTGAAGGTGG+TGG 0.586444 2.1:+6856230 None:intergenic
TATAGTTCAAGTACTGGTGG+AGG 0.593548 2.1:-6855846 MS.gene45488:CDS
GATTATAGTTCAAGTACTGG+TGG 0.600312 2.1:-6855849 MS.gene45488:CDS
GTAGGCGTTATTGGACAAGA+GGG 0.605161 2.1:-6856118 MS.gene45488:CDS
TGTGGCTGTGATGAGGATAG+TGG 0.611946 2.1:+6856362 None:intergenic
TGGAGGAGAAGGAGGAGTTG+TGG 0.612099 2.1:-6855829 MS.gene45488:CDS
TGTAGGCGTTATTGGACAAG+AGG 0.616737 2.1:-6856119 MS.gene45488:CDS
TTCAAAGCTGTCTCTGAAGG+TGG 0.619079 2.1:+6856227 None:intergenic
GAAATGTTCCTGTTGGTGGA+GGG 0.644271 2.1:-6856085 MS.gene45488:CDS
CTATCCTCATCACAGCCACA+TGG 0.646501 2.1:-6856359 MS.gene45488:CDS
GGCTGTGATGAGGATAGTGG+TGG 0.646948 2.1:+6856365 None:intergenic
TGCACCATGTGGCTGTGATG+AGG 0.663808 2.1:+6856355 None:intergenic
TAGGCGTTATTGGACAAGAG+GGG 0.675252 2.1:-6856117 MS.gene45488:CDS
AGGCGTTATTGGACAAGAGG+GGG 0.675862 2.1:-6856116 MS.gene45488:CDS
ATAATTGAGCCTGCACCATG+TGG 0.676504 2.1:+6856344 None:intergenic
TGGAATAGAAGAGAAAACCA+TGG 0.712223 2.1:+6856638 None:intergenic
GGGTGTAAGAATTCACCAAG+AGG 0.726422 2.1:+6855948 None:intergenic
GTGTTGGTTGATTCACAACG+AGG 0.729681 2.1:+6856200 None:intergenic
GTTAAATCGGAACACAACGG+AGG 0.733463 2.1:-6855669 MS.gene45488:CDS
TCGGTTAAATCGGAACACAA+CGG 0.745806 2.1:-6855672 MS.gene45488:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAGATATTATTATTACAA+AGG + chr2.1:6855665-6855684 None:intergenic 15.0%
!! TATTATTATTACAAAGGAAT+AGG + chr2.1:6855659-6855678 None:intergenic 15.0%
!! TCATATATAGATATATTACA+AGG + chr2.1:6855756-6855775 None:intergenic 15.0%
!! TTCTCATTACTATTTGATAT+TGG + chr2.1:6856185-6856204 None:intergenic 20.0%
!!! TAAATAAATTCACTCTTTTG+TGG + chr2.1:6855634-6855653 None:intergenic 20.0%
! ACAACCATTACAATAATTCA+TGG - chr2.1:6856588-6856607 MS.gene45488:intron 25.0%
! ATATTACAAGGTTACAAGAA+AGG + chr2.1:6855744-6855763 None:intergenic 25.0%
! ATGTAATTAGGTCTATTAGT+TGG + chr2.1:6856266-6856285 None:intergenic 25.0%
! TATTACAAGGTTACAAGAAA+GGG + chr2.1:6855743-6855762 None:intergenic 25.0%
! TCAAAACCATTATTCATGAA+AGG + chr2.1:6856410-6856429 None:intergenic 25.0%
! TGTAATGAAAAAAAATCTGC+AGG + chr2.1:6855696-6855715 None:intergenic 25.0%
! TGTAATTAGGTCTATTAGTT+GGG + chr2.1:6856265-6856284 None:intergenic 25.0%
! TTATTCTCTGACATATTCAT+TGG + chr2.1:6856569-6856588 None:intergenic 25.0%
!! ATTTGATATTGGAGATTTTG+AGG + chr2.1:6856174-6856193 None:intergenic 25.0%
!! GTAGTAACAAAATTTTGTGT+TGG + chr2.1:6856009-6856028 None:intergenic 25.0%
!! TCAACAATTTCACTTTGAAA+TGG + chr2.1:6856458-6856477 None:intergenic 25.0%
!! TTTGATATTGGAGATTTTGA+GGG + chr2.1:6856173-6856192 None:intergenic 25.0%
!!! CAACAATTTCACTTTGAAAT+GGG + chr2.1:6856457-6856476 None:intergenic 25.0%
CAGTCCATGAATTATTGTAA+TGG + chr2.1:6856595-6856614 None:intergenic 30.0%
CAGTTTCCTTTCATGAATAA+TGG - chr2.1:6856401-6856420 MS.gene45488:intron 30.0%
CTTATTTAGATCCTCTCAAT+TGG - chr2.1:6855576-6855595 MS.gene45488:CDS 30.0%
GTTGGAAACATGTTTCAAAT+TGG - chr2.1:6856317-6856336 MS.gene45488:CDS 30.0%
TGAAGAGATGTCATGTAATT+AGG + chr2.1:6856278-6856297 None:intergenic 30.0%
TTGAGAGGATCTAAATAAGA+TGG + chr2.1:6855575-6855594 None:intergenic 30.0%
!! AATTCATGGACTGATTTTCA+TGG - chr2.1:6856602-6856621 MS.gene45488:intron 30.0%
GCATTAAGAAATGTTCCTGT+TGG - chr2.1:6856098-6856117 MS.gene45488:CDS 35.0%
GGTGATTATAGTTCAAGTAC+TGG - chr2.1:6856338-6856357 MS.gene45488:CDS 35.0%
TGAACCAACAACTACTTCTA+GGG - chr2.1:6856475-6856494 MS.gene45488:intron 35.0%
TTAAGAAATGTTCCTGTTGG+TGG - chr2.1:6856101-6856120 MS.gene45488:CDS 35.0%
TTGAACCAACAACTACTTCT+AGG - chr2.1:6856474-6856493 MS.gene45488:intron 35.0%
!! GATTATAGTTCAAGTACTGG+TGG - chr2.1:6856341-6856360 MS.gene45488:CDS 35.0%
!!! AGTAGAGGTGTTACTCTTTT+TGG + chr2.1:6856150-6856169 None:intergenic 35.0%
CAAGAGGAGTTGAAGTTGAA+TGG + chr2.1:6856229-6856248 None:intergenic 40.0%
CATCTCTTCAGAATCTGAAC+CGG - chr2.1:6856288-6856307 MS.gene45488:CDS 40.0%
CATTCAACTTCAACTCCTCT+TGG - chr2.1:6856227-6856246 MS.gene45488:CDS 40.0%
GTAACCCTAGAAGTAGTTGT+TGG + chr2.1:6856482-6856501 None:intergenic 40.0%
TACTACTTTGATGCCTGCAT+CGG - chr2.1:6856499-6856518 MS.gene45488:intron 40.0%
TCGGTTAAATCGGAACACAA+CGG - chr2.1:6856518-6856537 MS.gene45488:intron 40.0%
! GACACTTTTGCAAGACATGT+AGG - chr2.1:6856054-6856073 MS.gene45488:CDS 40.0%
! GGAAGCAACTGATGTTGATT+TGG + chr2.1:6855807-6855826 None:intergenic 40.0%
! TCATGGTCTTGCATCTTCTT+CGG - chr2.1:6856619-6856638 MS.gene45488:CDS 40.0%
!! AAAAGTGTCTTGGTTGAGAC+AGG + chr2.1:6856043-6856062 None:intergenic 40.0%
!! CATGTCTTGCAAAAGTGTCT+TGG + chr2.1:6856053-6856072 None:intergenic 40.0%
!! TATAGTTCAAGTACTGGTGG+AGG - chr2.1:6856344-6856363 MS.gene45488:CDS 40.0%
ACATGTTTCCAACACCGAAC+CGG + chr2.1:6856310-6856329 None:intergenic 45.0%
ATAATTGAGCCTGCACCATG+TGG + chr2.1:6855849-6855868 None:intergenic 45.0%
ATGGTGCAGGCTCAATTATC+AGG - chr2.1:6855850-6855869 MS.gene45488:CDS 45.0%
CACTTCAAAGCTGTCTCTGA+AGG + chr2.1:6855969-6855988 None:intergenic 45.0%
CTTCAGAATCTGAACCGGTT+CGG - chr2.1:6856293-6856312 MS.gene45488:CDS 45.0%
GCAAGACATGTAGGCGTTAT+TGG - chr2.1:6856063-6856082 MS.gene45488:CDS 45.0%
GGGTGTAAGAATTCACCAAG+AGG + chr2.1:6856245-6856264 None:intergenic 45.0%
GTAGGCGTTATTGGACAAGA+GGG - chr2.1:6856072-6856091 MS.gene45488:CDS 45.0%
GTTAAATCGGAACACAACGG+AGG - chr2.1:6856521-6856540 MS.gene45488:intron 45.0%
TAGGCGTTATTGGACAAGAG+GGG - chr2.1:6856073-6856092 MS.gene45488:CDS 45.0%
TGACGTTCAAACTGGTCATC+AGG - chr2.1:6855914-6855933 MS.gene45488:CDS 45.0%
TGTAGGCGTTATTGGACAAG+AGG - chr2.1:6856071-6856090 MS.gene45488:CDS 45.0%
TGTTCCGATTTAACCGATGC+AGG + chr2.1:6856515-6856534 None:intergenic 45.0%
! AAGGTGGTGGTAACTTAGCT+TGG + chr2.1:6855950-6855969 None:intergenic 45.0%
! AGAAATGTTCCTGTTGGTGG+AGG - chr2.1:6856104-6856123 MS.gene45488:CDS 45.0%
! CTTACTTGCTGCCAATTGAG+AGG + chr2.1:6855590-6855609 None:intergenic 45.0%
! GAAATGTTCCTGTTGGTGGA+GGG - chr2.1:6856105-6856124 MS.gene45488:CDS 45.0%
! TTCAAAGCTGTCTCTGAAGG+TGG + chr2.1:6855966-6855985 None:intergenic 45.0%
!! GATGCCTGCATCGGTTAAAT+CGG - chr2.1:6856508-6856527 MS.gene45488:intron 45.0%
!! GTGTTGGTTGATTCACAACG+AGG + chr2.1:6855993-6856012 None:intergenic 45.0%
!! TGGAGATTTTGAGGGAGTAG+AGG + chr2.1:6856165-6856184 None:intergenic 45.0%
AAATCGGAACACAACGGAGG+AGG - chr2.1:6856524-6856543 MS.gene45488:intron 50.0%
AAGGAGGAGTTGTGGATCAG+TGG - chr2.1:6856369-6856388 MS.gene45488:CDS 50.0%
AGGCGTTATTGGACAAGAGG+GGG - chr2.1:6856074-6856093 MS.gene45488:CDS 50.0%
CTATCCTCATCACAGCCACA+TGG - chr2.1:6855831-6855850 MS.gene45488:CDS 50.0%
GCAGCTCATGACGTTCAAAC+TGG - chr2.1:6855906-6855925 MS.gene45488:CDS 50.0%
TGTGGCTGTGATGAGGATAG+TGG + chr2.1:6855831-6855850 None:intergenic 50.0%
! AAAGCTGTCTCTGAAGGTGG+TGG + chr2.1:6855963-6855982 None:intergenic 50.0%
! AGCTTGATCCGGTATCGAAC+CGG + chr2.1:6855877-6855896 None:intergenic 50.0%
!! AATCTGAACCGGTTCGGTGT+TGG - chr2.1:6856299-6856318 MS.gene45488:CDS 50.0%
!! TCAAGTACTGGTGGAGGAGA+AGG - chr2.1:6856350-6856369 MS.gene45488:CDS 50.0%
ACCGGATCAAGCTCAAGCTC+AGG - chr2.1:6855884-6855903 MS.gene45488:CDS 55.0%
GCAGGCTCAATTATCAGGCC+CGG - chr2.1:6855855-6855874 MS.gene45488:CDS 55.0%
GCCTGAGCTTGAGCTTGATC+CGG + chr2.1:6855888-6855907 None:intergenic 55.0%
TCATCACAGCCACATGGTGC+AGG - chr2.1:6855837-6855856 MS.gene45488:CDS 55.0%
TGCACCATGTGGCTGTGATG+AGG + chr2.1:6855838-6855857 None:intergenic 55.0%
TGGAGGAGAAGGAGGAGTTG+TGG - chr2.1:6856361-6856380 MS.gene45488:CDS 55.0%
! GCTTGATCCGGTATCGAACC+GGG + chr2.1:6855876-6855895 None:intergenic 55.0%
! GGCTGTGATGAGGATAGTGG+TGG + chr2.1:6855828-6855847 None:intergenic 55.0%
! TATCAGGCCCGGTTCGATAC+CGG - chr2.1:6855866-6855885 MS.gene45488:CDS 55.0%
!! AGTACTGGTGGAGGAGAAGG+AGG - chr2.1:6856353-6856372 MS.gene45488:CDS 55.0%
CTACGACACCCTCCACCAAC+AGG + chr2.1:6856116-6856135 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6855554 6856658 6855554 ID=MS.gene45488
chr2.1 mRNA 6855554 6856658 6855554 ID=MS.gene45488.t1;Parent=MS.gene45488
chr2.1 exon 6856608 6856658 6856608 ID=MS.gene45488.t1.exon1;Parent=MS.gene45488.t1
chr2.1 CDS 6856608 6856658 6856608 ID=cds.MS.gene45488.t1;Parent=MS.gene45488.t1
chr2.1 exon 6855554 6856411 6855554 ID=MS.gene45488.t1.exon2;Parent=MS.gene45488.t1
chr2.1 CDS 6855554 6856411 6855554 ID=cds.MS.gene45488.t1;Parent=MS.gene45488.t1
Gene Sequence

>MS.gene45488

ATGGTTTTCTCTTCTATTCCATCTTATTTAGATCCTCTCAATTGGCAGCAAGTAAGTTTTTTCTTTTTCTTTTTTTTCCACAAAAGAGTGAATTTATTTATTCCTATTCCTTTGTAATAATAATATCTTCTTGAATATACCTGCAGATTTTTTTTCATTACAACTCAAGAATAATTTCATCTTTTTCCCTTTCTTGTAACCTTGTAATATATCTATATATGAATTTCATTATACATATGTTTTGCAGCAACCAAATCAACATCAGTTGCTTCCACCACTATCCTCATCACAGCCACATGGTGCAGGCTCAATTATCAGGCCCGGTTCGATACCGGATCAAGCTCAAGCTCAGGCAGCTCATGACGTTCAAACTGGTCATCAGGTTCAAACTCACCAAGCTAAGTTACCACCACCTTCAGAGACAGCTTTGAAGTGTCCTCGTTGTGAATCAACCAACACAAAATTTTGTTACTACAACAACTATAACCTGTCTCAACCAAGACACTTTTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCATTAAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAGCAAAAAGACCAAAAAGAGTAACACCTCTACTCCCTCAAAATCTCCAATATCAAATAGTAATGAGAAAGATTATTCAACAAGTGCAATCCATTCAACTTCAACTCCTCTTGGTGAATTCTTACACCCAACTAATAGACCTAATTACATGACATCTCTTCAGAATCTGAACCGGTTCGGTGTTGGAAACATGTTTCAAATTGGTGATTATAGTTCAAGTACTGGTGGAGGAGAAGGAGGAGTTGTGGATCAGTGGAGATTTCAGCAGTTTCCTTTCATGAATAATGGTTTTGATTCAAGTACTTCAAATGTTTCTTTCCCATTTCAAAGTGAAATTGTTGAACCAACAACTACTTCTAGGGTTACTACTTTGATGCCTGCATCGGTTAAATCGGAACACAACGGAGGAGGTTTTAATCTGCTTAGATCTCCAATGAATATGTCAGAGAATAACAACCATTACAATAATTCATGGACTGATTTTCATGGTCTTGCATCTTCTTCGGCTAGTCGTCTGTTATAA
Protein sequence

>MS.gene45488.t1

MVFSSIPSYLDPLNWQQQPNQHQLLPPLSSSQPHGAGSIIRPGSIPDQAQAQAAHDVQTGHQVQTHQAKLPPPSETALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSNTSTPSKSPISNSNEKDYSTSAIHSTSTPLGEFLHPTNRPNYMTSLQNLNRFGVGNMFQIGDYSSSTGGGEGGVVDQWRFQQFPFMNNGFDSSTSNVSFPFQSEIVEPTTTSRVTTLMPASVKSEHNGGGFNLLRSPMNMSENNNHYNNSWTDFHGLASSSASRLL