AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45511

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45511.t1 MTR_2g097210 96.346 301 10 1 1 301 1 300 0.0 588
MS.gene45511.t1 MTR_2g097210 96.346 301 10 1 1 301 1 300 0.0 587
MS.gene45511.t1 MTR_4g021755 66.038 265 87 2 37 301 34 295 1.52e-128 372
MS.gene45511.t1 MTR_7g061780 61.071 280 103 3 23 301 4 278 8.24e-112 327
MS.gene45511.t1 MTR_7g498280 60.396 303 104 3 1 301 1 289 8.10e-110 322
MS.gene45511.t1 MTR_2g103600 56.818 264 106 3 44 301 30 291 6.36e-98 291
MS.gene45511.t1 MTR_1g101310 53.608 291 116 3 16 301 5 281 2.21e-96 287
MS.gene45511.t1 MTR_3g073530 41.892 296 162 4 13 301 9 301 2.75e-65 209
MS.gene45511.t1 MTR_2g088290 35.745 235 92 6 65 298 1 177 8.81e-30 112
MS.gene45511.t1 MTR_2g088315 49.398 83 42 0 108 190 1 83 1.36e-20 84.3
MS.gene45511.t1 MTR_8g106030 35.714 126 64 3 177 301 99 208 1.68e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45511.t1 AT2G29050 64.189 296 103 2 6 301 15 307 4.66e-131 378
MS.gene45511.t1 AT2G29050 58.642 324 103 3 6 301 15 335 1.28e-126 365
MS.gene45511.t1 AT3G53780 60.870 276 100 2 26 301 45 312 1.86e-115 335
MS.gene45511.t1 AT3G53780 62.547 267 92 2 35 301 54 312 1.06e-114 337
MS.gene45511.t1 AT1G63120 65.182 247 78 2 44 288 30 270 1.28e-114 333
MS.gene45511.t1 AT5G07250 60.616 292 100 3 21 301 22 309 1.71e-105 311
MS.gene45511.t1 AT1G12750 55.720 271 115 2 33 301 6 273 3.61e-105 309
MS.gene45511.t1 AT1G12750 55.720 271 115 2 33 301 6 273 3.61e-105 309
MS.gene45511.t1 AT1G12750 55.720 271 115 2 33 301 6 273 3.61e-105 309
MS.gene45511.t1 AT1G12750 55.720 271 115 2 33 301 6 273 3.61e-105 309
MS.gene45511.t1 AT1G12750 55.720 271 115 2 33 301 6 273 3.61e-105 309
MS.gene45511.t1 AT1G52580 54.704 287 121 6 20 301 4 286 1.02e-95 285
MS.gene45511.t1 AT3G53780 63.918 194 64 1 108 301 1 188 1.42e-84 255
MS.gene45511.t1 AT4G23070 55.814 258 109 2 44 301 28 280 8.33e-81 247
MS.gene45511.t1 AT1G12750 60.000 185 72 1 32 214 5 189 9.90e-78 236
MS.gene45511.t1 AT1G12750 59.574 188 74 1 32 217 5 192 9.94e-78 235
MS.gene45511.t1 AT5G07250 65.761 184 59 1 38 217 46 229 8.71e-72 224
MS.gene45511.t1 AT1G77860 49.302 215 108 1 48 262 49 262 2.00e-68 217
MS.gene45511.t1 AT1G77860 49.302 215 108 1 48 262 49 262 3.09e-68 217

Find 77 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGCTTGAACAAGAATT+TGG 0.175005 2.1:+6626313 MS.gene45511:CDS
TGATTCGTCCTCAGTTTAAA+TGG 0.238851 2.1:+6626958 MS.gene45511:CDS
CTCTATGTGATATCTGGTTT+TGG 0.246364 2.1:+6626561 MS.gene45511:CDS
GGATTTCTCTATGTGATATC+TGG 0.262897 2.1:+6626555 MS.gene45511:CDS
TCTCAGAGCTCTTCATTAAT+TGG 0.278075 2.1:+6626670 MS.gene45511:CDS
TCTTTCCTATTACTCATTGC+AGG 0.286895 2.1:+6627071 MS.gene45511:CDS
CTTACCCTGCAATGAGTAAT+AGG 0.292148 2.1:-6627076 None:intergenic
TTCGCTCATCTAGGAGGATT+TGG 0.297054 2.1:+6626906 MS.gene45511:CDS
GGCGCCTTGTCTCTTGTATA+TGG 0.304879 2.1:+6626233 MS.gene45511:CDS
CTTGAACAAGAATTTGGATT+TGG 0.310501 2.1:+6626319 MS.gene45511:CDS
CATCTAGGAGGATTTGGTTC+TGG 0.319719 2.1:+6626912 MS.gene45511:CDS
TCACTCGTGATCGTGATTTC+AGG 0.355861 2.1:+6625094 MS.gene45511:CDS
CTTAAAGAAAACCCTCTCTT+TGG 0.366436 2.1:+6625270 MS.gene45511:CDS
TGGCACCACCGTTGAGGTTA+AGG 0.367443 2.1:+6625023 MS.gene45511:CDS
GGCATCTCAGTTGGTGCATC+TGG 0.372637 2.1:+6626618 MS.gene45511:CDS
TTTGGTTCTGGCTTTCTGCT+TGG 0.373387 2.1:+6626924 MS.gene45511:CDS
CTTGTATATGGTTGCATGGT+GGG 0.379600 2.1:+6626245 MS.gene45511:CDS
TGTCCTTTCGCAGTTAGAAT+TGG 0.379685 2.1:+6626534 MS.gene45511:intron
TTGGACGATATATGCCAATA+AGG 0.382911 2.1:+6626689 MS.gene45511:CDS
GGTGCATCTGGTGCATTGTT+TGG 0.382955 2.1:+6626630 MS.gene45511:CDS
AGCCAACAACAGTCTAAATC+TGG 0.385356 2.1:+6626984 MS.gene45511:CDS
ACCTTATCAATATGTGTTGT+GGG 0.394616 2.1:+6627043 MS.gene45511:CDS
ATCCAGATTTAGACTGTTGT+TGG 0.400472 2.1:-6626986 None:intergenic
GTTGTAATAAATTTAGCTGT+TGG 0.441288 2.1:+6626861 MS.gene45511:CDS
GTCTGCGTTATTCATACAAA+CGG 0.445629 2.1:+6626596 MS.gene45511:CDS
TGTCCTGAGAATGCATTTCA+TGG 0.455723 2.1:+6625204 MS.gene45511:CDS
TACCTTATCAATATGTGTTG+TGG 0.455869 2.1:+6627042 MS.gene45511:CDS
GGTGCATTGTTTGGCTTACT+CGG 0.462230 2.1:+6626639 MS.gene45511:CDS
TTTCAGGCTCTTTAAGCAAT+GGG 0.470163 2.1:+6625110 MS.gene45511:CDS
GTTGACAATTTCGCTCATCT+AGG 0.472592 2.1:+6626897 MS.gene45511:CDS
GTCTCTTGTATATGGTTGCA+TGG 0.482616 2.1:+6626241 MS.gene45511:CDS
AAGGAGAATCTTCCAAGAAA+AGG 0.495328 2.1:-6625240 None:intergenic
TCTTTAAGCAATGGGTTCCA+TGG 0.504864 2.1:+6625118 MS.gene45511:CDS
ACCCACAACACATATTGATA+AGG 0.507027 2.1:-6627044 None:intergenic
ATTTCAGGCTCTTTAAGCAA+TGG 0.516293 2.1:+6625109 MS.gene45511:CDS
CATTGTTTGGCTTACTCGGA+GGG 0.524954 2.1:+6626643 MS.gene45511:CDS
ACGTTGGCAAACACAAAAGT+TGG 0.526318 2.1:-6625147 None:intergenic
CTTTCCTATTACTCATTGCA+GGG 0.535119 2.1:+6627072 MS.gene45511:CDS
GTACCATGAAATGCATTCTC+AGG 0.536653 2.1:-6625207 None:intergenic
TCAACATGTTGGCAAGTACA+TGG 0.537008 2.1:-6626273 None:intergenic
AAATCACGATCACGAGTGAC+GGG 0.541550 2.1:-6625090 None:intergenic
TAAACTGAGGACGAATCAAA+AGG 0.544513 2.1:-6626953 None:intergenic
TGCTCTAGAAGTAGATAAAG+TGG 0.545530 2.1:+6626192 MS.gene45511:CDS
AAAACTCACGTAAAGGAAGA+AGG 0.547703 2.1:-6625294 None:intergenic
GACAATTTCGCTCATCTAGG+AGG 0.549429 2.1:+6626900 MS.gene45511:CDS
TCTGCGTTATTCATACAAAC+GGG 0.553724 2.1:+6626597 MS.gene45511:CDS
ACAAAAGTTGGAACAAGCCA+TGG 0.556908 2.1:-6625135 None:intergenic
ATACAAACGGGCATCTCAGT+TGG 0.569101 2.1:+6626609 MS.gene45511:CDS
GAAATCACGATCACGAGTGA+CGG 0.572889 2.1:-6625091 None:intergenic
ACGACGAAGACGGAGACCCA+CGG 0.573842 2.1:-6625056 None:intergenic
TCAACGGTGGTGCCACCATG+TGG 0.575383 2.1:-6625015 None:intergenic
AAATCATAATCATGAGTGGA+GGG 0.582372 2.1:+6624986 None:intergenic
TTGTATATGGTTGCATGGTG+GGG 0.585338 2.1:+6626246 MS.gene45511:CDS
AGGAAGAAGGACCAAAGAGA+GGG 0.589526 2.1:-6625281 None:intergenic
TGGTTCATGAACACGAAGGT+TGG 0.597343 2.1:+6626212 MS.gene45511:CDS
AACAATGAAAATAATAACGT+TGG 0.597447 2.1:-6625163 None:intergenic
TTAAGGTTCATCCTCGCCGT+GGG 0.597978 2.1:+6625040 MS.gene45511:CDS
TCTTGTATATGGTTGCATGG+TGG 0.604832 2.1:+6626244 MS.gene45511:CDS
GCATTGTTTGGCTTACTCGG+AGG 0.606501 2.1:+6626642 MS.gene45511:CDS
GTTAAGGTTCATCCTCGCCG+TGG 0.606777 2.1:+6625039 MS.gene45511:CDS
CGAAATTGTCAACATGTGGA+AGG 0.611940 2.1:-6626887 None:intergenic
TGAGCGAAATTGTCAACATG+TGG 0.615330 2.1:-6626891 None:intergenic
GGATTCGACGACGACGAAGA+CGG 0.615599 2.1:-6625066 None:intergenic
CAACGGTGGTGCCACCATGT+GGG 0.618108 2.1:-6625014 None:intergenic
ACATGGTGGCACCACCGTTG+AGG 0.621441 2.1:+6625017 MS.gene45511:CDS
AAGGAAGAAGGACCAAAGAG+AGG 0.633246 2.1:-6625282 None:intergenic
TGGCTTATCCATTTAAACTG+AGG 0.633333 2.1:-6626966 None:intergenic
AAAATCATAATCATGAGTGG+AGG 0.633390 2.1:+6624985 None:intergenic
TCACGATCACGAGTGACGGG+AGG 0.634822 2.1:-6625087 None:intergenic
AGGATGAACCTTAACCTCAA+CGG 0.671763 2.1:-6625031 None:intergenic
TCATAATCATGAGTGGAGGG+AGG 0.674267 2.1:+6624989 None:intergenic
GAAGACGGAGACCCACGGCG+AGG 0.680052 2.1:-6625051 None:intergenic
AGTGGAGGGAGGAACCCACA+TGG 0.690830 2.1:+6625000 MS.gene45511:CDS
GCAACCATATACAAGAGACA+AGG 0.709780 2.1:-6626237 None:intergenic
ATGAACCTTAACCTCAACGG+TGG 0.726735 2.1:-6625028 None:intergenic
GGAGGGAGGAACCCACATGG+TGG 0.736064 2.1:+6625003 MS.gene45511:CDS
AAAGTGGTTCATGAACACGA+AGG 0.793505 2.1:+6626208 MS.gene45511:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGACAATAAATTATTTATC+AGG - chr2.1:6626753-6626772 None:intergenic 15.0%
!! AATGATATAAATACAGATAA+TGG - chr2.1:6626412-6626431 None:intergenic 15.0%
!! TAAATAATTTATTGTCTTTG+CGG + chr2.1:6626755-6626774 MS.gene45511:intron 15.0%
!! AACAATGAAAATAATAACGT+TGG - chr2.1:6625166-6625185 None:intergenic 20.0%
!! ATGAACATGTGTTTATAAAT+GGG + chr2.1:6625742-6625761 MS.gene45511:intron 20.0%
!! TACATTAATCAAGTTATGAT+TGG + chr2.1:6625399-6625418 MS.gene45511:intron 20.0%
!!! TTGTTTTTACATAAATGTTC+TGG + chr2.1:6626430-6626449 MS.gene45511:intron 20.0%
! CAAAATGGAAAGAAATAGAA+TGG - chr2.1:6626793-6626812 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG + chr2.1:6625741-6625760 MS.gene45511:intron 25.0%
! GCTATTGCAAATACATAATT+TGG - chr2.1:6626063-6626082 None:intergenic 25.0%
! GTTGTAATAAATTTAGCTGT+TGG + chr2.1:6626861-6626880 MS.gene45511:CDS 25.0%
! TATCTGCCTAAAATTAAGAT+TGG - chr2.1:6626098-6626117 None:intergenic 25.0%
! TATGTATTTGCAATAGCTAA+TGG + chr2.1:6626066-6626085 MS.gene45511:intron 25.0%
! TGAACATGTGTTTATAAATG+GGG + chr2.1:6625743-6625762 MS.gene45511:intron 25.0%
! TTAATCAAGTTATGATTGGT+TGG + chr2.1:6625403-6625422 MS.gene45511:intron 25.0%
! TTCATAGATTACATTCTCTA+TGG + chr2.1:6625984-6626003 MS.gene45511:intron 25.0%
!! ACAGTACCAATCTTAATTTT+AGG + chr2.1:6626089-6626108 MS.gene45511:intron 25.0%
!! ATGTTGAGTCTTCTTTTTAT+TGG + chr2.1:6626289-6626308 MS.gene45511:CDS 25.0%
!! GTCTTCTTTTTATTGGAATT+CGG + chr2.1:6626296-6626315 MS.gene45511:CDS 25.0%
!!! TTTTAGTTCATTCACCTTAT+TGG - chr2.1:6626706-6626725 None:intergenic 25.0%
AAAAACCTAATAGATGTGTG+AGG + chr2.1:6625925-6625944 MS.gene45511:intron 30.0%
AAAAAGAAGACTCAACATGT+TGG - chr2.1:6626287-6626306 None:intergenic 30.0%
AAAACCTAATAGATGTGTGA+GGG + chr2.1:6625926-6625945 MS.gene45511:intron 30.0%
AACAAAAACGTGTGTTTGTA+AGG + chr2.1:6625884-6625903 MS.gene45511:intron 30.0%
AACATGTGTTTATAAATGGG+GGG + chr2.1:6625745-6625764 MS.gene45511:intron 30.0%
ACCTTATCAATATGTGTTGT+GGG + chr2.1:6627043-6627062 MS.gene45511:CDS 30.0%
CAAAACATCATGAGACAAAA+TGG - chr2.1:6626808-6626827 None:intergenic 30.0%
CTTGAACAAGAATTTGGATT+TGG + chr2.1:6626319-6626338 MS.gene45511:CDS 30.0%
GAAAAAGAAAACTCACGTAA+AGG - chr2.1:6625304-6625323 None:intergenic 30.0%
GAACATGTGTTTATAAATGG+GGG + chr2.1:6625744-6625763 MS.gene45511:intron 30.0%
GAATGTAATCTATGAATCAC+CGG - chr2.1:6625980-6625999 None:intergenic 30.0%
GGAAAGAAATAGAATGGTTT+AGG - chr2.1:6626787-6626806 None:intergenic 30.0%
TACCTTATCAATATGTGTTG+TGG + chr2.1:6627042-6627061 MS.gene45511:CDS 30.0%
TGAGAATGAGTTTATTAGTG+TGG + chr2.1:6625524-6625543 MS.gene45511:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG - chr2.1:6625830-6625849 None:intergenic 30.0%
! ACAAGAATTTGGATTTGGTA+TGG + chr2.1:6626324-6626343 MS.gene45511:intron 30.0%
! ACTTTAGATGTCTAAGATTG+AGG + chr2.1:6625679-6625698 MS.gene45511:intron 30.0%
! ATTTTCAGATTACAGGAGAT+GGG + chr2.1:6626169-6626188 MS.gene45511:intron 30.0%
! CTTTAGATGTCTAAGATTGA+GGG + chr2.1:6625680-6625699 MS.gene45511:intron 30.0%
! GTTTTCTTTAAGTGGTTGAA+AGG - chr2.1:6625262-6625281 None:intergenic 30.0%
! TTTTAGGCAGATATATCTCT+TGG + chr2.1:6626105-6626124 MS.gene45511:intron 30.0%
!! AGTTAAATTGATTCGAGCTA+AGG + chr2.1:6625774-6625793 MS.gene45511:intron 30.0%
!! GTTAAATTGATTCGAGCTAA+GGG + chr2.1:6625775-6625794 MS.gene45511:intron 30.0%
!! TACAGATAATGGAATACTGT+TGG - chr2.1:6626401-6626420 None:intergenic 30.0%
AAAACTCACGTAAAGGAAGA+AGG - chr2.1:6625297-6625316 None:intergenic 35.0%
AAGGAGAATCTTCCAAGAAA+AGG - chr2.1:6625243-6625262 None:intergenic 35.0%
AATCCAATTCTAACTGCGAA+AGG - chr2.1:6626540-6626559 None:intergenic 35.0%
ACCCACAACACATATTGATA+AGG - chr2.1:6627047-6627066 None:intergenic 35.0%
ATCCAGATTTAGACTGTTGT+TGG - chr2.1:6626989-6627008 None:intergenic 35.0%
ATTTCAGGCTCTTTAAGCAA+TGG + chr2.1:6625109-6625128 MS.gene45511:CDS 35.0%
CGATATACTTGAACAATGCA+AGG - chr2.1:6626363-6626382 None:intergenic 35.0%
CTTAAAGAAAACCCTCTCTT+TGG + chr2.1:6625270-6625289 MS.gene45511:CDS 35.0%
CTTTCCTATTACTCATTGCA+GGG + chr2.1:6627072-6627091 MS.gene45511:CDS 35.0%
GGATTTCTCTATGTGATATC+TGG + chr2.1:6626555-6626574 MS.gene45511:CDS 35.0%
GTCTGCGTTATTCATACAAA+CGG + chr2.1:6626596-6626615 MS.gene45511:CDS 35.0%
TAAACTGAGGACGAATCAAA+AGG - chr2.1:6626956-6626975 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+GGG - chr2.1:6625829-6625848 None:intergenic 35.0%
TCTCAGAGCTCTTCATTAAT+TGG + chr2.1:6626670-6626689 MS.gene45511:CDS 35.0%
TCTGCGTTATTCATACAAAC+GGG + chr2.1:6626597-6626616 MS.gene45511:CDS 35.0%
TCTTTCCTATTACTCATTGC+AGG + chr2.1:6627071-6627090 MS.gene45511:CDS 35.0%
TGATTCGTCCTCAGTTTAAA+TGG + chr2.1:6626958-6626977 MS.gene45511:CDS 35.0%
TGGCTTATCCATTTAAACTG+AGG - chr2.1:6626969-6626988 None:intergenic 35.0%
TTGGACGATATATGCCAATA+AGG + chr2.1:6626689-6626708 MS.gene45511:CDS 35.0%
TTTCAGGCTCTTTAAGCAAT+GGG + chr2.1:6625110-6625129 MS.gene45511:CDS 35.0%
! AAGAGAGGGTTTTCTTTAAG+TGG - chr2.1:6625270-6625289 None:intergenic 35.0%
! ATGTCTAAGATTGAGGGTAA+GGG + chr2.1:6625686-6625705 MS.gene45511:intron 35.0%
! ATTCGGCTTGAACAAGAATT+TGG + chr2.1:6626313-6626332 MS.gene45511:CDS 35.0%
! ATTTGGATTTGGTATGGTTC+TGG + chr2.1:6626330-6626349 MS.gene45511:intron 35.0%
! CATTTTCAGATTACAGGAGA+TGG + chr2.1:6626168-6626187 MS.gene45511:intron 35.0%
! TACTCGCATTTTCAGATTAC+AGG + chr2.1:6626162-6626181 MS.gene45511:intron 35.0%
!! CTCTATGTGATATCTGGTTT+TGG + chr2.1:6626561-6626580 MS.gene45511:CDS 35.0%
!! TGCTCTAGAAGTAGATAAAG+TGG + chr2.1:6626192-6626211 MS.gene45511:CDS 35.0%
!!! ATGTGATATCTGGTTTTGGA+GGG + chr2.1:6626565-6626584 MS.gene45511:CDS 35.0%
!!! TATGTGATATCTGGTTTTGG+AGG + chr2.1:6626564-6626583 MS.gene45511:CDS 35.0%
AAAGTGGTTCATGAACACGA+AGG + chr2.1:6626208-6626227 MS.gene45511:CDS 40.0%
ACAAAAGTTGGAACAAGCCA+TGG - chr2.1:6625138-6625157 None:intergenic 40.0%
ACAACCCTCACACATCTATT+AGG - chr2.1:6625933-6625952 None:intergenic 40.0%
ACGTTGGCAAACACAAAAGT+TGG - chr2.1:6625150-6625169 None:intergenic 40.0%
AGCCAACAACAGTCTAAATC+TGG + chr2.1:6626984-6627003 MS.gene45511:CDS 40.0%
AGGATGAACCTTAACCTCAA+CGG - chr2.1:6625034-6625053 None:intergenic 40.0%
CGAAATTGTCAACATGTGGA+AGG - chr2.1:6626890-6626909 None:intergenic 40.0%
CTTGTATATGGTTGCATGGT+GGG + chr2.1:6626245-6626264 MS.gene45511:CDS 40.0%
GCAACCATATACAAGAGACA+AGG - chr2.1:6626240-6626259 None:intergenic 40.0%
GCCTAACTCATTCACAAAAC+TGG - chr2.1:6625569-6625588 None:intergenic 40.0%
GTACCATGAAATGCATTCTC+AGG - chr2.1:6625210-6625229 None:intergenic 40.0%
GTCTCTTGTATATGGTTGCA+TGG + chr2.1:6626241-6626260 MS.gene45511:CDS 40.0%
GTGTGTTTGTAAGGATGCAT+AGG + chr2.1:6625893-6625912 MS.gene45511:intron 40.0%
GTGTTTATAAATGGGGGGTT+GGG + chr2.1:6625750-6625769 MS.gene45511:intron 40.0%
GTTGACAATTTCGCTCATCT+AGG + chr2.1:6626897-6626916 MS.gene45511:CDS 40.0%
TAACTGCGAAAGGACAAGAA+AGG - chr2.1:6626530-6626549 None:intergenic 40.0%
TCAACATGTTGGCAAGTACA+TGG - chr2.1:6626276-6626295 None:intergenic 40.0%
TCTTGTATATGGTTGCATGG+TGG + chr2.1:6626244-6626263 MS.gene45511:CDS 40.0%
TGAGCGAAATTGTCAACATG+TGG - chr2.1:6626894-6626913 None:intergenic 40.0%
TGTCCTGAGAATGCATTTCA+TGG + chr2.1:6625204-6625223 MS.gene45511:CDS 40.0%
TGTCCTTTCGCAGTTAGAAT+TGG + chr2.1:6626534-6626553 MS.gene45511:intron 40.0%
TGTGTTTATAAATGGGGGGT+TGG + chr2.1:6625749-6625768 MS.gene45511:intron 40.0%
TTGTATATGGTTGCATGGTG+GGG + chr2.1:6626246-6626265 MS.gene45511:CDS 40.0%
! GATGTCTAAGATTGAGGGTA+AGG + chr2.1:6625685-6625704 MS.gene45511:intron 40.0%
! GTCTCATGATGTTTTGCAGA+TGG + chr2.1:6626812-6626831 MS.gene45511:intron 40.0%
! TCTTTAAGCAATGGGTTCCA+TGG + chr2.1:6625118-6625137 MS.gene45511:CDS 40.0%
!! ACTTGTGTTGCTCCTTTTCT+TGG + chr2.1:6625228-6625247 MS.gene45511:CDS 40.0%
!! GCCAGTTTTGTGAATGAGTT+AGG + chr2.1:6625565-6625584 MS.gene45511:intron 40.0%
AAATCACGATCACGAGTGAC+GGG - chr2.1:6625093-6625112 None:intergenic 45.0%
AAGGAAGAAGGACCAAAGAG+AGG - chr2.1:6625285-6625304 None:intergenic 45.0%
AGGAAGAAGGACCAAAGAGA+GGG - chr2.1:6625284-6625303 None:intergenic 45.0%
ATACAAACGGGCATCTCAGT+TGG + chr2.1:6626609-6626628 MS.gene45511:CDS 45.0%
ATGAACCTTAACCTCAACGG+TGG - chr2.1:6625031-6625050 None:intergenic 45.0%
CGAGCTAAGGGATAAGAAGT+TGG + chr2.1:6625787-6625806 MS.gene45511:intron 45.0%
GAAATCACGATCACGAGTGA+CGG - chr2.1:6625094-6625113 None:intergenic 45.0%
GACAATTTCGCTCATCTAGG+AGG + chr2.1:6626900-6626919 MS.gene45511:CDS 45.0%
GCTAAGGGATAAGAAGTTGG+AGG + chr2.1:6625790-6625809 MS.gene45511:intron 45.0%
TCACTCGTGATCGTGATTTC+AGG + chr2.1:6625094-6625113 MS.gene45511:CDS 45.0%
TCTTGTGTCTGTGTCTCTAC+CGG + chr2.1:6625958-6625977 MS.gene45511:intron 45.0%
TGGTTCATGAACACGAAGGT+TGG + chr2.1:6626212-6626231 MS.gene45511:CDS 45.0%
TTCGCTCATCTAGGAGGATT+TGG + chr2.1:6626906-6626925 MS.gene45511:CDS 45.0%
! CATCTAAAGTGTGACTCGTG+TGG - chr2.1:6625669-6625688 None:intergenic 45.0%
! CATCTAGGAGGATTTGGTTC+TGG + chr2.1:6626912-6626931 MS.gene45511:CDS 45.0%
! CATTGTTTGGCTTACTCGGA+GGG + chr2.1:6626643-6626662 MS.gene45511:CDS 45.0%
! GGTGCATTGTTTGGCTTACT+CGG + chr2.1:6626639-6626658 MS.gene45511:CDS 45.0%
!! GGAGGTTCTAAGTTCAAACC+CGG + chr2.1:6625808-6625827 MS.gene45511:intron 45.0%
!! TTTGGTTCTGGCTTTCTGCT+TGG + chr2.1:6626924-6626943 MS.gene45511:CDS 45.0%
CTAAGTTCAAACCCGGACGA+AGG + chr2.1:6625815-6625834 MS.gene45511:intron 50.0%
GCTATCTGGCCACCATTATC+AGG + chr2.1:6625643-6625662 MS.gene45511:intron 50.0%
GGCGCCTTGTCTCTTGTATA+TGG + chr2.1:6626233-6626252 MS.gene45511:CDS 50.0%
GGTGCATCTGGTGCATTGTT+TGG + chr2.1:6626630-6626649 MS.gene45511:CDS 50.0%
TGACTCGTGTGGCCTGATAA+TGG - chr2.1:6625658-6625677 None:intergenic 50.0%
TTAAGGTTCATCCTCGCCGT+GGG + chr2.1:6625040-6625059 MS.gene45511:CDS 50.0%
! GATAATGGTGGCCAGATAGC+AGG - chr2.1:6625643-6625662 None:intergenic 50.0%
! GCATTGTTTGGCTTACTCGG+AGG + chr2.1:6626642-6626661 MS.gene45511:CDS 50.0%
AATGGTGGCCAGATAGCAGG+CGG - chr2.1:6625640-6625659 None:intergenic 55.0%
CCAGATAGCAGGCGGTTCAA+TGG - chr2.1:6625632-6625651 None:intergenic 55.0%
CCATTGAACCGCCTGCTATC+TGG + chr2.1:6625629-6625648 MS.gene45511:intron 55.0%
GCAGGCGGTTCAATGGATCT+TGG - chr2.1:6625625-6625644 None:intergenic 55.0%
GGATTCGACGACGACGAAGA+CGG - chr2.1:6625069-6625088 None:intergenic 55.0%
GTTAAGGTTCATCCTCGCCG+TGG + chr2.1:6625039-6625058 MS.gene45511:CDS 55.0%
TGGCACCACCGTTGAGGTTA+AGG + chr2.1:6625023-6625042 MS.gene45511:CDS 55.0%
! GGCATCTCAGTTGGTGCATC+TGG + chr2.1:6626618-6626637 MS.gene45511:CDS 55.0%
!! CTCGTGTGGCCTGATAATGG+TGG - chr2.1:6625655-6625674 None:intergenic 55.0%
ACATGGTGGCACCACCGTTG+AGG + chr2.1:6625017-6625036 MS.gene45511:CDS 60.0%
ACGACGAAGACGGAGACCCA+CGG - chr2.1:6625059-6625078 None:intergenic 60.0%
AGTGGAGGGAGGAACCCACA+TGG + chr2.1:6625000-6625019 MS.gene45511:CDS 60.0%
! TCACGATCACGAGTGACGGG+AGG - chr2.1:6625090-6625109 None:intergenic 60.0%
!! CAACGGTGGTGCCACCATGT+GGG - chr2.1:6625017-6625036 None:intergenic 60.0%
!! TCAACGGTGGTGCCACCATG+TGG - chr2.1:6625018-6625037 None:intergenic 60.0%
GGAGGGAGGAACCCACATGG+TGG + chr2.1:6625003-6625022 MS.gene45511:CDS 65.0%
GAAGACGGAGACCCACGGCG+AGG - chr2.1:6625054-6625073 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6624997 6627097 6624997 ID=MS.gene45511
chr2.1 mRNA 6624997 6627097 6624997 ID=MS.gene45511.t1;Parent=MS.gene45511
chr2.1 exon 6624997 6625307 6624997 ID=MS.gene45511.t1.exon1;Parent=MS.gene45511.t1
chr2.1 CDS 6624997 6625307 6624997 ID=cds.MS.gene45511.t1;Parent=MS.gene45511.t1
chr2.1 exon 6626177 6626340 6626177 ID=MS.gene45511.t1.exon2;Parent=MS.gene45511.t1
chr2.1 CDS 6626177 6626340 6626177 ID=cds.MS.gene45511.t1;Parent=MS.gene45511.t1
chr2.1 exon 6626547 6626710 6626547 ID=MS.gene45511.t1.exon3;Parent=MS.gene45511.t1
chr2.1 CDS 6626547 6626710 6626547 ID=cds.MS.gene45511.t1;Parent=MS.gene45511.t1
chr2.1 exon 6626831 6627097 6626831 ID=MS.gene45511.t1.exon4;Parent=MS.gene45511.t1
chr2.1 CDS 6626831 6627097 6626831 ID=cds.MS.gene45511.t1;Parent=MS.gene45511.t1
Gene Sequence

>MS.gene45511

ATGAGTGGAGGGAGGAACCCACATGGTGGCACCACCGTTGAGGTTAAGGTTCATCCTCGCCGTGGGTCTCCGTCTTCGTCGTCGTCGAATCCTCCCGTCACTCGTGATCGTGATTTCAGGCTCTTTAAGCAATGGGTTCCATGGCTTGTTCCAACTTTTGTGTTTGCCAACGTTATTATTTTCATTGTTACAATGTATGTTAATGATTGTCCTGAGAATGCATTTCATGGTACTTGTGTTGCTCCTTTTCTTGGAAGATTCTCCTTTCAACCACTTAAAGAAAACCCTCTCTTTGGTCCTTCTTCCTTTACGTGAGTTTTCTTTTTCTCTTTATCTTTTCATCTTATCATACAATACAATTACAATGTTTTATTTTTTTTTATTTTATTTTAATTACAATTTTACATTAATCAAGTTATGATTGGTTGGTTCTTATGATGCATGTAGTTACATTCAATTATTCTATTTTCTCAAATTATTACATGTGTTGATGTTGTTAAGAGTCTCGCATTAGATGAGATGTAGCTTGAGAATGAGTTTATTAGTGTGGATAGTCGTCATTTTGCAAGCCAGTTTTGTGAATGAGTTAGGCATAATTGAAATTTTAAGATGTATCAGAGTTTTTCCAAGATCCATTGAACCGCCTGCTATCTGGCCACCATTATCAGGCCACACGAGTCACACTTTAGATGTCTAAGATTGAGGGTAAGGGTGTGTTAAGAGTCTCACATTGAATGAGATAGACATGAACATGTGTTTATAAATGGGGGGTTGGGTAGTTAAATTGATTCGAGCTAAGGGATAAGAAGTTGGAGGTTCTAAGTTCAAACCCGGACGAAGGAGTAAATATTAATATAACAACTAATTGCTAACACTTGTCATTCAGAAACAAAAACGTGTGTTTGTAAGGATGCATAGGTTCAATATAAAAAACCTAATAGATGTGTGAGGGTTGTGTTTATCTTGTGTCTGTGTCTCTACCGGTGATTCATAGATTACATTCTCTATGGCTATGAAATTTCAGAAATGACTAAAATTTGAGAGTTTTCAACTCAAATTCAGTCCAAATTATGTATTTGCAATAGCTAATGGACAGTACCAATCTTAATTTTAGGCAGATATATCTCTTGGAGATGTTTTTTATGTGCTGACGAAAACTATTTATTACTCGCATTTTCAGATTACAGGAGATGGGTGCTCTAGAAGTAGATAAAGTGGTTCATGAACACGAAGGTTGGCGCCTTGTCTCTTGTATATGGTTGCATGGTGGGGCTATCCATGTACTTGCCAACATGTTGAGTCTTCTTTTTATTGGAATTCGGCTTGAACAAGAATTTGGATTTGGTATGGTTCTGGTAATTATCCTTGCATTGTTCAAGTATATCGTTATATTTCTTCTGACCAACAGTATTCCATTATCTGTATTTATATCATTGTTTTTACATAAATGTTCTGGAAGAAAAGAAACTCAGCTGAGTTTATTTAGCAATGAAATCAATAAAAAAGCTTTGTTGTCGATTGTAATTTCTACCTTTCTTGTCCTTTCGCAGTTAGAATTGGATTTCTCTATGTGATATCTGGTTTTGGAGGGAGTTTGCTGTCTGCGTTATTCATACAAACGGGCATCTCAGTTGGTGCATCTGGTGCATTGTTTGGCTTACTCGGAGGGATGCTCTCAGAGCTCTTCATTAATTGGACGATATATGCCAATAAGGTGAATGAACTAAAAAAATTGTTCAATTCAACAGTGCTTCCTGATAAATAATTTATTGTCTTTGCGGTCTGCGCCTAAACCATTCTATTTCTTTCCATTTTGTCTCATGATGTTTTGCAGATGGCTGCATTGTTGACTCTTATAGTCATTGTTGTAATAAATTTAGCTGTTGGAGTCCTTCCACATGTTGACAATTTCGCTCATCTAGGAGGATTTGGTTCTGGCTTTCTGCTTGGATTTGTCCTTTTGATTCGTCCTCAGTTTAAATGGATAAGCCAACAACAGTCTAAATCTGGATCTCATGCATTTTCTGTTAAACACAATAAGTACTTACCTTATCAATATGTGTTGTGGGTTTTGTCTTTCCTATTACTCATTGCAGGGTAA
Protein sequence

>MS.gene45511.t1

MSGGRNPHGGTTVEVKVHPRRGSPSSSSSNPPVTRDRDFRLFKQWVPWLVPTFVFANVIIFIVTMYVNDCPENAFHGTCVAPFLGRFSFQPLKENPLFGPSSFTLQEMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELFINWTIYANKMAALLTLIVIVVINLAVGVLPHVDNFAHLGGFGSGFLLGFVLLIRPQFKWISQQQSKSGSHAFSVKHNKYLPYQYVLWVLSFLLLIAG