AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052104

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052104.t1 MTR_2g097210 96.501 343 11 1 1 343 1 342 0.0 677
MS.gene052104.t1 MTR_2g097210 96.346 301 10 1 1 301 1 300 0.0 586
MS.gene052104.t1 MTR_4g021755 64.706 306 105 2 37 342 34 336 1.09e-150 430
MS.gene052104.t1 MTR_7g498280 59.412 340 122 3 1 338 1 326 4.60e-128 370
MS.gene052104.t1 MTR_7g061780 61.311 305 112 3 23 326 4 303 2.86e-125 363
MS.gene052104.t1 MTR_1g101310 53.191 329 135 3 16 339 5 319 4.79e-114 333
MS.gene052104.t1 MTR_2g103600 55.636 275 114 3 44 312 30 302 2.18e-99 296
MS.gene052104.t1 MTR_3g073530 40.533 338 188 5 13 343 9 340 1.37e-79 248
MS.gene052104.t1 MTR_2g088290 36.462 277 116 7 65 340 1 218 7.73e-43 148
MS.gene052104.t1 MTR_2g088315 49.398 83 42 0 108 190 1 83 2.07e-20 84.7
MS.gene052104.t1 MTR_8g106030 37.931 145 73 3 177 320 99 227 9.23e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052104.t1 AT2G29050 63.905 338 119 2 6 343 15 349 3.31e-157 446
MS.gene052104.t1 AT3G53780 62.662 308 107 2 35 342 54 353 1.59e-137 396
MS.gene052104.t1 AT1G63120 63.946 294 98 2 44 335 30 317 2.93e-129 372
MS.gene052104.t1 AT2G29050 58.104 327 106 3 6 304 15 338 2.78e-126 366
MS.gene052104.t1 AT5G07250 60.061 328 116 3 21 337 22 345 2.00e-125 363
MS.gene052104.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052104.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052104.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052104.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052104.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052104.t1 AT3G53780 62.547 267 92 2 35 301 54 312 1.29e-114 335
MS.gene052104.t1 AT3G53780 63.559 236 80 1 108 343 1 230 9.98e-108 316
MS.gene052104.t1 AT1G52580 54.545 297 126 6 20 311 4 296 6.52e-98 292
MS.gene052104.t1 AT4G23070 55.326 291 125 2 44 334 28 313 2.37e-94 283
MS.gene052104.t1 AT5G07250 49.695 328 103 4 21 337 22 298 4.31e-89 270
MS.gene052104.t1 AT1G77860 45.151 299 159 4 48 343 49 345 3.77e-85 261
MS.gene052104.t1 AT1G77860 45.151 299 159 4 48 343 49 345 8.09e-85 261
MS.gene052104.t1 AT1G12750 60.000 185 72 1 32 214 5 189 6.47e-77 235
MS.gene052104.t1 AT1G12750 59.574 188 74 1 32 217 5 192 9.39e-77 234

Find 83 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGCTTGAACAAGAATT+TGG 0.175005 2.2:-5053649 MS.gene052104:CDS
TGATTCGTCCTCAGTTTAAA+TGG 0.238851 2.2:-5053004 MS.gene052104:CDS
CTCTATGTGATATCTGGTTT+TGG 0.246364 2.2:-5053401 MS.gene052104:CDS
GGATTTCTCTATGTGATATC+TGG 0.262897 2.2:-5053407 MS.gene052104:CDS
TCTCAGAGCTCTTCATTAAT+TGG 0.278075 2.2:-5053292 MS.gene052104:CDS
TCTTTCCTATTACTCATTGC+AGG 0.286895 2.2:-5052891 MS.gene052104:CDS
CTTACCCTGCAATGAGTAAT+AGG 0.292148 2.2:+5052886 None:intergenic
TTCGCTCATCTAGGAGGATT+TGG 0.297054 2.2:-5053056 MS.gene052104:CDS
GGCGCCTTGTCTCTTGTATA+TGG 0.304879 2.2:-5053729 MS.gene052104:CDS
CTTGAACAAGAATTTGGATT+TGG 0.310501 2.2:-5053643 MS.gene052104:intron
CATCTAGGAGGATTTGGTTC+TGG 0.319719 2.2:-5053050 MS.gene052104:CDS
TCACTCGTGATCGTGATTTC+AGG 0.355861 2.2:-5054869 MS.gene052104:CDS
CTTAAAGAAAACCCTCTCTT+TGG 0.366436 2.2:-5054693 MS.gene052104:CDS
TGGCACCACCGTTGAGGTTA+AGG 0.367443 2.2:-5054940 MS.gene052104:CDS
GGCATCTCAGTTGGTGCATC+TGG 0.372637 2.2:-5053344 MS.gene052104:CDS
TTTGGTTCTGGCTTTCTGCT+TGG 0.373387 2.2:-5053038 MS.gene052104:CDS
CTTGTATATGGTTGCATGGT+GGG 0.379600 2.2:-5053717 MS.gene052104:CDS
TGTCCTTTCGCAGTTAGAAT+TGG 0.379685 2.2:-5053428 MS.gene052104:intron
TTGGACGATATATGCCAATA+AGG 0.382911 2.2:-5053273 MS.gene052104:intron
GGTGCATCTGGTGCATTGTT+TGG 0.382955 2.2:-5053332 MS.gene052104:CDS
AGCCAACAACAGTCTAAATC+TGG 0.385356 2.2:-5052978 MS.gene052104:CDS
ACCTTATCAATATGTGTTGT+GGG 0.394616 2.2:-5052919 MS.gene052104:CDS
ATCCAGATTTAGACTGTTGT+TGG 0.400472 2.2:+5052976 None:intergenic
GTTGTGTTCCTACCTCAAAA+TGG 0.409054 2.2:-5052639 MS.gene052104:CDS
GTTGTAATAAATTTAGCTGT+TGG 0.441288 2.2:-5053101 MS.gene052104:CDS
GTCTGCGTTATTCATACAAA+CGG 0.445629 2.2:-5053366 MS.gene052104:CDS
TGTCCTGAGAATGCATTTCA+TGG 0.455723 2.2:-5054759 MS.gene052104:CDS
TACCTTATCAATATGTGTTG+TGG 0.455869 2.2:-5052920 MS.gene052104:CDS
GGTGCATTGTTTGGCTTACT+CGG 0.462230 2.2:-5053323 MS.gene052104:CDS
TTTCAGGCTCTTTAAGCAAT+GGG 0.470163 2.2:-5054853 MS.gene052104:CDS
GTTGACAATTTCGCTCATCT+AGG 0.472592 2.2:-5053065 MS.gene052104:CDS
GTCTCTTGTATATGGTTGCA+TGG 0.482616 2.2:-5053721 MS.gene052104:CDS
AAGGAGAATCTTCCAAGAAA+AGG 0.495328 2.2:+5054723 None:intergenic
TCTTTAAGCAATGGGTTCCA+TGG 0.504864 2.2:-5054845 MS.gene052104:CDS
ACCCACAACACATATTGATA+AGG 0.507027 2.2:+5052918 None:intergenic
TACCTCAAAATGGAGTTGTC+AGG 0.507679 2.2:-5052629 MS.gene052104:CDS
GGGATGGTTCTACTCTTTCG+AGG 0.511587 2.2:-5052703 MS.gene052104:CDS
ATTTCAGGCTCTTTAAGCAA+TGG 0.516293 2.2:-5054854 MS.gene052104:CDS
CATTGTTTGGCTTACTCGGA+GGG 0.524954 2.2:-5053319 MS.gene052104:CDS
ACGTTGGCAAACACAAAAGT+TGG 0.526318 2.2:+5054816 None:intergenic
CTTTCCTATTACTCATTGCA+GGG 0.535119 2.2:-5052890 MS.gene052104:intron
GTACCATGAAATGCATTCTC+AGG 0.536653 2.2:+5054756 None:intergenic
TCAACATGTTGGCAAGTACA+TGG 0.537008 2.2:+5053689 None:intergenic
AAATCACGATCACGAGTGAC+GGG 0.541550 2.2:+5054873 None:intergenic
TGACAGATTCATTACTGGGA+TGG 0.543513 2.2:-5052719 MS.gene052104:intron
TAAACTGAGGACGAATCAAA+AGG 0.544513 2.2:+5053009 None:intergenic
TGCTCTAGAAGTAGATAAAG+TGG 0.545530 2.2:-5053770 MS.gene052104:CDS
AAAACTCACGTAAAGGAAGA+AGG 0.547703 2.2:+5054669 None:intergenic
GACAATTTCGCTCATCTAGG+AGG 0.549429 2.2:-5053062 MS.gene052104:CDS
TCTGCGTTATTCATACAAAC+GGG 0.553724 2.2:-5053365 MS.gene052104:CDS
ACAAAAGTTGGAACAAGCCA+TGG 0.556908 2.2:+5054828 None:intergenic
ATACAAACGGGCATCTCAGT+TGG 0.569101 2.2:-5053353 MS.gene052104:CDS
GAAATCACGATCACGAGTGA+CGG 0.572889 2.2:+5054872 None:intergenic
ACGACGAAGACGGAGACCCA+CGG 0.573842 2.2:+5054907 None:intergenic
TCAACGGTGGTGCCACCATG+TGG 0.575383 2.2:+5054948 None:intergenic
AAATCATAATCATGAGTGGA+GGG 0.582372 2.2:-5054977 None:intergenic
TTGTATATGGTTGCATGGTG+GGG 0.585338 2.2:-5053716 MS.gene052104:CDS
AGGAAGAAGGACCAAAGAGA+GGG 0.589526 2.2:+5054682 None:intergenic
TGGTTCATGAACACGAAGGT+TGG 0.597343 2.2:-5053750 MS.gene052104:CDS
AACAATGAAAATAATAACGT+TGG 0.597447 2.2:+5054800 None:intergenic
GGAACAAAGCATTTATTGTG+AGG 0.597670 2.2:-5052608 None:intergenic
TTAAGGTTCATCCTCGCCGT+GGG 0.597978 2.2:-5054923 MS.gene052104:CDS
TCTTGTATATGGTTGCATGG+TGG 0.604832 2.2:-5053718 MS.gene052104:CDS
GCATTGTTTGGCTTACTCGG+AGG 0.606501 2.2:-5053320 MS.gene052104:CDS
GTTAAGGTTCATCCTCGCCG+TGG 0.606777 2.2:-5054924 MS.gene052104:CDS
CGAAATTGTCAACATGTGGA+AGG 0.611940 2.2:+5053075 None:intergenic
TGAGCGAAATTGTCAACATG+TGG 0.615330 2.2:+5053071 None:intergenic
GGATTCGACGACGACGAAGA+CGG 0.615599 2.2:+5054897 None:intergenic
CAACGGTGGTGCCACCATGT+GGG 0.618108 2.2:+5054949 None:intergenic
ACATGGTGGCACCACCGTTG+AGG 0.621441 2.2:-5054946 MS.gene052104:CDS
AAGGAAGAAGGACCAAAGAG+AGG 0.633246 2.2:+5054681 None:intergenic
TGGCTTATCCATTTAAACTG+AGG 0.633333 2.2:+5052996 None:intergenic
AAAATCATAATCATGAGTGG+AGG 0.633390 2.2:-5054978 None:intergenic
TCACGATCACGAGTGACGGG+AGG 0.634822 2.2:+5054876 None:intergenic
ACTTGAATGAACGTTGCTCG+TGG 0.663668 2.2:-5052675 MS.gene052104:CDS
AGGATGAACCTTAACCTCAA+CGG 0.671763 2.2:+5054932 None:intergenic
TCATAATCATGAGTGGAGGG+AGG 0.674267 2.2:-5054974 None:intergenic
GAAGACGGAGACCCACGGCG+AGG 0.680052 2.2:+5054912 None:intergenic
AGTGGAGGGAGGAACCCACA+TGG 0.690830 2.2:-5054963 MS.gene052104:CDS
GCAACCATATACAAGAGACA+AGG 0.709780 2.2:+5053725 None:intergenic
ATGAACCTTAACCTCAACGG+TGG 0.726735 2.2:+5054935 None:intergenic
GGAGGGAGGAACCCACATGG+TGG 0.736064 2.2:-5054960 MS.gene052104:CDS
AAAGTGGTTCATGAACACGA+AGG 0.793505 2.2:-5053754 MS.gene052104:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGACAATAAATTATTTATC+AGG + chr2.2:5054366-5054385 None:intergenic 15.0%
!! AATGATATAAATACAGATAA+TGG + chr2.2:5054025-5054044 None:intergenic 15.0%
!! ATATTACCTTTAATATTCTT+AGG - chr2.2:5054740-5054759 MS.gene052104:CDS 15.0%
!! TAAATAATTTATTGTCTTTG+CGG - chr2.2:5054368-5054387 MS.gene052104:intron 15.0%
!! AACAATGAAAATAATAACGT+TGG + chr2.2:5052778-5052797 None:intergenic 20.0%
!! ATGAACATGTGTTTATAAAT+GGG - chr2.2:5053355-5053374 MS.gene052104:CDS 20.0%
!! TACATTAATCAAGTTATGAT+TGG - chr2.2:5053012-5053031 MS.gene052104:CDS 20.0%
!!! AGTAGTATTTAATCTAAAGT+TGG - chr2.2:5054826-5054845 MS.gene052104:CDS 20.0%
!!! TTGTTTTTACATAAATGTTC+TGG - chr2.2:5054043-5054062 MS.gene052104:intron 20.0%
! CAAAATGGAAAGAAATAGAA+TGG + chr2.2:5054406-5054425 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG - chr2.2:5053354-5053373 MS.gene052104:CDS 25.0%
! GCTATTGCAAATACATAATT+TGG + chr2.2:5053676-5053695 None:intergenic 25.0%
! GTTGTAATAAATTTAGCTGT+TGG - chr2.2:5054474-5054493 MS.gene052104:intron 25.0%
! TATCTGCCTAAAATTAAGAT+TGG + chr2.2:5053711-5053730 None:intergenic 25.0%
! TATGTATTTGCAATAGCTAA+TGG - chr2.2:5053679-5053698 MS.gene052104:CDS 25.0%
! TGAACATGTGTTTATAAATG+GGG - chr2.2:5053356-5053375 MS.gene052104:CDS 25.0%
! TTAATCAAGTTATGATTGGT+TGG - chr2.2:5053016-5053035 MS.gene052104:CDS 25.0%
! TTCATAGATTACATTCTCTA+TGG - chr2.2:5053597-5053616 MS.gene052104:intron 25.0%
!! ACAGTACCAATCTTAATTTT+AGG - chr2.2:5053702-5053721 MS.gene052104:CDS 25.0%
!! ATGTTGAGTCTTCTTTTTAT+TGG - chr2.2:5053902-5053921 MS.gene052104:intron 25.0%
!! GTCTTCTTTTTATTGGAATT+CGG - chr2.2:5053909-5053928 MS.gene052104:intron 25.0%
!!! AATTTTGACAGATTCATTAC+TGG - chr2.2:5054851-5054870 MS.gene052104:CDS 25.0%
!!! ATTTTGACAGATTCATTACT+GGG - chr2.2:5054852-5054871 MS.gene052104:CDS 25.0%
!!! TTTTAGTTCATTCACCTTAT+TGG + chr2.2:5054319-5054338 None:intergenic 25.0%
AAAAACCTAATAGATGTGTG+AGG - chr2.2:5053538-5053557 MS.gene052104:intron 30.0%
AAAAAGAAGACTCAACATGT+TGG + chr2.2:5053900-5053919 None:intergenic 30.0%
AAAACCTAATAGATGTGTGA+GGG - chr2.2:5053539-5053558 MS.gene052104:intron 30.0%
AACAAAAACGTGTGTTTGTA+AGG - chr2.2:5053497-5053516 MS.gene052104:intron 30.0%
AACATGTGTTTATAAATGGG+GGG - chr2.2:5053358-5053377 MS.gene052104:CDS 30.0%
ACCTTATCAATATGTGTTGT+GGG - chr2.2:5054656-5054675 MS.gene052104:intron 30.0%
CAAAACATCATGAGACAAAA+TGG + chr2.2:5054421-5054440 None:intergenic 30.0%
CCAAGTCCTAAGAATATTAA+AGG + chr2.2:5054749-5054768 None:intergenic 30.0%
CCTTTAATATTCTTAGGACT+TGG - chr2.2:5054746-5054765 MS.gene052104:CDS 30.0%
CTTGAACAAGAATTTGGATT+TGG - chr2.2:5053932-5053951 MS.gene052104:intron 30.0%
GAAAAAGAAAACTCACGTAA+AGG + chr2.2:5052916-5052935 None:intergenic 30.0%
GAACATGTGTTTATAAATGG+GGG - chr2.2:5053357-5053376 MS.gene052104:CDS 30.0%
GAATGTAATCTATGAATCAC+CGG + chr2.2:5053593-5053612 None:intergenic 30.0%
GGAAAGAAATAGAATGGTTT+AGG + chr2.2:5054400-5054419 None:intergenic 30.0%
TACCTTATCAATATGTGTTG+TGG - chr2.2:5054655-5054674 MS.gene052104:intron 30.0%
TGAGAATGAGTTTATTAGTG+TGG - chr2.2:5053137-5053156 MS.gene052104:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG + chr2.2:5053443-5053462 None:intergenic 30.0%
! ACAAGAATTTGGATTTGGTA+TGG - chr2.2:5053937-5053956 MS.gene052104:intron 30.0%
! ACACTTTAGATGTCTAAGAT+TGG - chr2.2:5053290-5053309 MS.gene052104:CDS 30.0%
! ACTTTAGATGTCTAAGATTG+GGG - chr2.2:5053292-5053311 MS.gene052104:CDS 30.0%
! ATTTTCAGATTACAGGAGAT+GGG - chr2.2:5053782-5053801 MS.gene052104:CDS 30.0%
! CACTTTAGATGTCTAAGATT+GGG - chr2.2:5053291-5053310 MS.gene052104:CDS 30.0%
! GTTTTCTTTAAGTGGTTGAA+AGG + chr2.2:5052874-5052893 None:intergenic 30.0%
! TTTTAGGCAGATATATCTCT+TGG - chr2.2:5053718-5053737 MS.gene052104:CDS 30.0%
!! AGTTAAATTGATTCGAGCTA+AGG - chr2.2:5053387-5053406 MS.gene052104:CDS 30.0%
!! GTTAAATTGATTCGAGCTAA+GGG - chr2.2:5053388-5053407 MS.gene052104:CDS 30.0%
!! TACAGATAATGGAATACTGT+TGG + chr2.2:5054014-5054033 None:intergenic 30.0%
AAAACTCACGTAAAGGAAGA+AGG + chr2.2:5052909-5052928 None:intergenic 35.0%
AAGGAGAATCTTCCAAGAAA+AGG + chr2.2:5052855-5052874 None:intergenic 35.0%
AATCCAATTCTAACTGCGAA+AGG + chr2.2:5054153-5054172 None:intergenic 35.0%
ACCCACAACACATATTGATA+AGG + chr2.2:5054660-5054679 None:intergenic 35.0%
ATCCAGATTTAGACTGTTGT+TGG + chr2.2:5054602-5054621 None:intergenic 35.0%
ATTTCAGGCTCTTTAAGCAA+TGG - chr2.2:5052721-5052740 MS.gene052104:intron 35.0%
CGATATACTTGAACAATGCA+AGG + chr2.2:5053976-5053995 None:intergenic 35.0%
CTTAAAGAAAACCCTCTCTT+TGG - chr2.2:5052882-5052901 MS.gene052104:intron 35.0%
CTTTCCTATTACTCATTGCA+GGG - chr2.2:5054685-5054704 MS.gene052104:CDS 35.0%
GGATTTCTCTATGTGATATC+TGG - chr2.2:5054168-5054187 MS.gene052104:intron 35.0%
GTCTGCGTTATTCATACAAA+CGG - chr2.2:5054209-5054228 MS.gene052104:intron 35.0%
TAAACTGAGGACGAATCAAA+AGG + chr2.2:5054569-5054588 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+GGG + chr2.2:5053442-5053461 None:intergenic 35.0%
TCTCAGAGCTCTTCATTAAT+TGG - chr2.2:5054283-5054302 MS.gene052104:intron 35.0%
TCTGCGTTATTCATACAAAC+GGG - chr2.2:5054210-5054229 MS.gene052104:intron 35.0%
TCTTTCCTATTACTCATTGC+AGG - chr2.2:5054684-5054703 MS.gene052104:CDS 35.0%
TGATTCGTCCTCAGTTTAAA+TGG - chr2.2:5054571-5054590 MS.gene052104:intron 35.0%
TGGCTTATCCATTTAAACTG+AGG + chr2.2:5054582-5054601 None:intergenic 35.0%
TTGGACGATATATGCCAATA+AGG - chr2.2:5054302-5054321 MS.gene052104:intron 35.0%
TTTCAGGCTCTTTAAGCAAT+GGG - chr2.2:5052722-5052741 MS.gene052104:intron 35.0%
! AAGAGAGGGTTTTCTTTAAG+TGG + chr2.2:5052882-5052901 None:intergenic 35.0%
! ATTCGGCTTGAACAAGAATT+TGG - chr2.2:5053926-5053945 MS.gene052104:intron 35.0%
! ATTTGGATTTGGTATGGTTC+TGG - chr2.2:5053943-5053962 MS.gene052104:intron 35.0%
! CATTTTCAGATTACAGGAGA+TGG - chr2.2:5053781-5053800 MS.gene052104:CDS 35.0%
! CTTTAGATGTCTAAGATTGG+GGG - chr2.2:5053293-5053312 MS.gene052104:CDS 35.0%
! TACTCGCATTTTCAGATTAC+AGG - chr2.2:5053775-5053794 MS.gene052104:CDS 35.0%
!! CTCTATGTGATATCTGGTTT+TGG - chr2.2:5054174-5054193 MS.gene052104:intron 35.0%
!! GATAATGGAATACTGTTGGT+CGG + chr2.2:5054010-5054029 None:intergenic 35.0%
!! TGCTCTAGAAGTAGATAAAG+TGG - chr2.2:5053805-5053824 MS.gene052104:intron 35.0%
!!! ATGTGATATCTGGTTTTGGA+GGG - chr2.2:5054178-5054197 MS.gene052104:intron 35.0%
!!! TATGTGATATCTGGTTTTGG+AGG - chr2.2:5054177-5054196 MS.gene052104:intron 35.0%
AAAGTGGTTCATGAACACGA+AGG - chr2.2:5053821-5053840 MS.gene052104:intron 40.0%
ACAAAAGTTGGAACAAGCCA+TGG + chr2.2:5052750-5052769 None:intergenic 40.0%
ACAACCCTCACACATCTATT+AGG + chr2.2:5053546-5053565 None:intergenic 40.0%
ACGTTGGCAAACACAAAAGT+TGG + chr2.2:5052762-5052781 None:intergenic 40.0%
AGCCAACAACAGTCTAAATC+TGG - chr2.2:5054597-5054616 MS.gene052104:intron 40.0%
AGGATGAACCTTAACCTCAA+CGG + chr2.2:5052646-5052665 None:intergenic 40.0%
CGAAATTGTCAACATGTGGA+AGG + chr2.2:5054503-5054522 None:intergenic 40.0%
CTTACCCTGCAATGAGTAAT+AGG + chr2.2:5054692-5054711 None:intergenic 40.0%
CTTGTATATGGTTGCATGGT+GGG - chr2.2:5053858-5053877 MS.gene052104:intron 40.0%
GCAACCATATACAAGAGACA+AGG + chr2.2:5053853-5053872 None:intergenic 40.0%
GCCTAACTCATTCACAAAAC+TGG + chr2.2:5053182-5053201 None:intergenic 40.0%
GTACCATGAAATGCATTCTC+AGG + chr2.2:5052822-5052841 None:intergenic 40.0%
GTCTCTTGTATATGGTTGCA+TGG - chr2.2:5053854-5053873 MS.gene052104:intron 40.0%
GTGTGTTTGTAAGGATGCAT+AGG - chr2.2:5053506-5053525 MS.gene052104:intron 40.0%
GTGTTTATAAATGGGGGGTT+GGG - chr2.2:5053363-5053382 MS.gene052104:CDS 40.0%
GTTGACAATTTCGCTCATCT+AGG - chr2.2:5054510-5054529 MS.gene052104:intron 40.0%
GTTGTGTTCCTACCTCAAAA+TGG - chr2.2:5054936-5054955 MS.gene052104:CDS 40.0%
TAACTGCGAAAGGACAAGAA+AGG + chr2.2:5054143-5054162 None:intergenic 40.0%
TACCTCAAAATGGAGTTGTC+AGG - chr2.2:5054946-5054965 MS.gene052104:CDS 40.0%
TCAACATGTTGGCAAGTACA+TGG + chr2.2:5053889-5053908 None:intergenic 40.0%
TCTTGTATATGGTTGCATGG+TGG - chr2.2:5053857-5053876 MS.gene052104:intron 40.0%
TGACAGATTCATTACTGGGA+TGG - chr2.2:5054856-5054875 MS.gene052104:CDS 40.0%
TGAGCGAAATTGTCAACATG+TGG + chr2.2:5054507-5054526 None:intergenic 40.0%
TGTCCTGAGAATGCATTTCA+TGG - chr2.2:5052816-5052835 MS.gene052104:intron 40.0%
TGTCCTTTCGCAGTTAGAAT+TGG - chr2.2:5054147-5054166 MS.gene052104:intron 40.0%
TGTGTTTATAAATGGGGGGT+TGG - chr2.2:5053362-5053381 MS.gene052104:CDS 40.0%
TTGTATATGGTTGCATGGTG+GGG - chr2.2:5053859-5053878 MS.gene052104:intron 40.0%
! ATGTCTAAGATTGGGGGTAA+GGG - chr2.2:5053299-5053318 MS.gene052104:CDS 40.0%
! GTCTCATGATGTTTTGCAGA+TGG - chr2.2:5054425-5054444 MS.gene052104:intron 40.0%
! TCTTTAAGCAATGGGTTCCA+TGG - chr2.2:5052730-5052749 MS.gene052104:intron 40.0%
! TTCCTGACAACTCCATTTTG+AGG + chr2.2:5054951-5054970 None:intergenic 40.0%
!! ACTTGTGTTGCTCCTTTTCT+TGG - chr2.2:5052840-5052859 MS.gene052104:intron 40.0%
!! GCCAGTTTTGTGAATGAGTT+AGG - chr2.2:5053178-5053197 MS.gene052104:intron 40.0%
!!! TGACAACTCCATTTTGAGGT+AGG + chr2.2:5054947-5054966 None:intergenic 40.0%
AAATCACGATCACGAGTGAC+GGG + chr2.2:5052705-5052724 None:intergenic 45.0%
AAGGAAGAAGGACCAAAGAG+AGG + chr2.2:5052897-5052916 None:intergenic 45.0%
ACTTGAATGAACGTTGCTCG+TGG - chr2.2:5054900-5054919 MS.gene052104:CDS 45.0%
AGGAAGAAGGACCAAAGAGA+GGG + chr2.2:5052896-5052915 None:intergenic 45.0%
ATACAAACGGGCATCTCAGT+TGG - chr2.2:5054222-5054241 MS.gene052104:intron 45.0%
ATGAACCTTAACCTCAACGG+TGG + chr2.2:5052643-5052662 None:intergenic 45.0%
CGAGCTAAGGGATAAGAAGT+TGG - chr2.2:5053400-5053419 MS.gene052104:CDS 45.0%
GAAATCACGATCACGAGTGA+CGG + chr2.2:5052706-5052725 None:intergenic 45.0%
GACAATTTCGCTCATCTAGG+AGG - chr2.2:5054513-5054532 MS.gene052104:intron 45.0%
GCTAAGGGATAAGAAGTTGG+AGG - chr2.2:5053403-5053422 MS.gene052104:CDS 45.0%
TCACTCGTGATCGTGATTTC+AGG - chr2.2:5052706-5052725 MS.gene052104:CDS 45.0%
TCTTGTGTCTGTGTCTCTAC+CGG - chr2.2:5053571-5053590 MS.gene052104:intron 45.0%
TGGTTCATGAACACGAAGGT+TGG - chr2.2:5053825-5053844 MS.gene052104:intron 45.0%
TTCGCTCATCTAGGAGGATT+TGG - chr2.2:5054519-5054538 MS.gene052104:intron 45.0%
! CATCTAAAGTGTGACTCGTG+TGG + chr2.2:5053282-5053301 None:intergenic 45.0%
! CATCTAGGAGGATTTGGTTC+TGG - chr2.2:5054525-5054544 MS.gene052104:intron 45.0%
! CATTGTTTGGCTTACTCGGA+GGG - chr2.2:5054256-5054275 MS.gene052104:intron 45.0%
! GATGTCTAAGATTGGGGGTA+AGG - chr2.2:5053298-5053317 MS.gene052104:CDS 45.0%
! GGTGCATTGTTTGGCTTACT+CGG - chr2.2:5054252-5054271 MS.gene052104:intron 45.0%
!! GGAGGTTCTAAGTTCAAACC+CGG - chr2.2:5053421-5053440 MS.gene052104:intron 45.0%
!! TTTGGTTCTGGCTTTCTGCT+TGG - chr2.2:5054537-5054556 MS.gene052104:intron 45.0%
CTAAGTTCAAACCCGGACGA+AGG - chr2.2:5053428-5053447 MS.gene052104:intron 50.0%
GCTATCTGGCCACCATTATC+AGG - chr2.2:5053256-5053275 MS.gene052104:intron 50.0%
GGCGCCTTGTCTCTTGTATA+TGG - chr2.2:5053846-5053865 MS.gene052104:intron 50.0%
GGTGCATCTGGTGCATTGTT+TGG - chr2.2:5054243-5054262 MS.gene052104:intron 50.0%
TGACTCGTGTGGCCTGATAA+TGG + chr2.2:5053271-5053290 None:intergenic 50.0%
TTAAGGTTCATCCTCGCCGT+GGG - chr2.2:5052652-5052671 MS.gene052104:CDS 50.0%
! GATAATGGTGGCCAGATAGC+AGG + chr2.2:5053256-5053275 None:intergenic 50.0%
! GCATTGTTTGGCTTACTCGG+AGG - chr2.2:5054255-5054274 MS.gene052104:intron 50.0%
! GGGATGGTTCTACTCTTTCG+AGG - chr2.2:5054872-5054891 MS.gene052104:CDS 50.0%
AATGGTGGCCAGATAGCAGG+CGG + chr2.2:5053253-5053272 None:intergenic 55.0%
CCAGATAGCAGGCGGTTCAA+TGG + chr2.2:5053245-5053264 None:intergenic 55.0%
CCATTGAACCGCCTGCTATC+TGG - chr2.2:5053242-5053261 MS.gene052104:intron 55.0%
GCAGGCGGTTCAATGGATCT+TGG + chr2.2:5053238-5053257 None:intergenic 55.0%
GGATTCGACGACGACGAAGA+CGG + chr2.2:5052681-5052700 None:intergenic 55.0%
GTTAAGGTTCATCCTCGCCG+TGG - chr2.2:5052651-5052670 MS.gene052104:CDS 55.0%
TGGCACCACCGTTGAGGTTA+AGG - chr2.2:5052635-5052654 MS.gene052104:CDS 55.0%
! GGCATCTCAGTTGGTGCATC+TGG - chr2.2:5054231-5054250 MS.gene052104:intron 55.0%
!! CTCGTGTGGCCTGATAATGG+TGG + chr2.2:5053268-5053287 None:intergenic 55.0%
ACATGGTGGCACCACCGTTG+AGG - chr2.2:5052629-5052648 MS.gene052104:CDS 60.0%
ACGACGAAGACGGAGACCCA+CGG + chr2.2:5052671-5052690 None:intergenic 60.0%
AGTGGAGGGAGGAACCCACA+TGG - chr2.2:5052612-5052631 MS.gene052104:CDS 60.0%
! TCACGATCACGAGTGACGGG+AGG + chr2.2:5052702-5052721 None:intergenic 60.0%
!! CAACGGTGGTGCCACCATGT+GGG + chr2.2:5052629-5052648 None:intergenic 60.0%
!! TCAACGGTGGTGCCACCATG+TGG + chr2.2:5052630-5052649 None:intergenic 60.0%
GGAGGGAGGAACCCACATGG+TGG - chr2.2:5052615-5052634 MS.gene052104:CDS 65.0%
GAAGACGGAGACCCACGGCG+AGG + chr2.2:5052666-5052685 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5052609 5054988 5052609 ID=MS.gene052104
chr2.2 mRNA 5052609 5054988 5052609 ID=MS.gene052104.t1;Parent=MS.gene052104
chr2.2 exon 5054678 5054988 5054678 ID=MS.gene052104.t1.exon1;Parent=MS.gene052104.t1
chr2.2 CDS 5054678 5054988 5054678 ID=cds.MS.gene052104.t1;Parent=MS.gene052104.t1
chr2.2 exon 5053644 5053807 5053644 ID=MS.gene052104.t1.exon2;Parent=MS.gene052104.t1
chr2.2 CDS 5053644 5053807 5053644 ID=cds.MS.gene052104.t1;Parent=MS.gene052104.t1
chr2.2 exon 5053274 5053437 5053274 ID=MS.gene052104.t1.exon3;Parent=MS.gene052104.t1
chr2.2 CDS 5053274 5053437 5053274 ID=cds.MS.gene052104.t1;Parent=MS.gene052104.t1
chr2.2 exon 5052891 5053153 5052891 ID=MS.gene052104.t1.exon4;Parent=MS.gene052104.t1
chr2.2 CDS 5052891 5053153 5052891 ID=cds.MS.gene052104.t1;Parent=MS.gene052104.t1
chr2.2 exon 5052609 5052735 5052609 ID=MS.gene052104.t1.exon5;Parent=MS.gene052104.t1
chr2.2 CDS 5052609 5052735 5052609 ID=cds.MS.gene052104.t1;Parent=MS.gene052104.t1
Gene Sequence

>MS.gene052104

ATGAGTGGAGGGAGGAACCCACATGGTGGCACCACCGTTGAGGTTAAGGTTCATCCTCGCCGTGGGTCTCCGTCTTCGTCGTCGTCGAATCCTCCCGTCACTCGTGATCGTGATTTCAGGCTCTTTAAGCAATGGGTTCCATGGCTTGTTCCAACTTTTGTGTTTGCCAACGTTATTATTTTCATTGTTACAATGTATGTTAATGATTGTCCTGAGAATGCATTTCATGGTACTTGTGTTGCTCCTTTTCTTGGAAGATTCTCCTTTCAACCACTTAAAGAAAACCCTCTCTTTGGTCCTTCTTCCTTTACGTGAGTTTTCTTTTTCTCTTTATCTTTTCATCTTATCATACAATACAATTACAATGTTTTATTTTTTTTTTATTTTATTTTAATTACAATTTTACATTAATCAAGTTATGATTGGTTGGTTCTTATGATGCATGTAGTTACATTCAATTATTCTATTTTCTCAAATTATTACATGTGTTGATGTTGTTAAGAGTCTTGCATTAGATGAGATGTAGCTTGAGAATGAGTTTATTAGTGTGGATAATCGTCATTTTGCAAGCCAGTTTTGTGAATGAGTTAGGCATAATTGAAATTTTAAGATGTATCAGAGTTTTTCCAAGATCCATTGAACCGCCTGCTATCTGGCCACCATTATCAGGCCACACGAGTCACACTTTAGATGTCTAAGATTGGGGGTAAGGGTGTGTTAAGAGTCTCACATTGAATGAGATAGACATGAACATGTGTTTATAAATGGGGGGTTGGGTAGTTAAATTGATTCGAGCTAAGGGATAAGAAGTTGGAGGTTCTAAGTTCAAACCCGGACGAAGGAGTAAATATTAATATAACAACTAATTGCTAACACTTGTCATTCAGAAACAAAAACGTGTGTTTGTAAGGATGCATAGGTTCAATATAAAAAACCTAATAGATGTGTGAGGGTTGTGTTTATCTTGTGTCTGTGTCTCTACCGGTGATTCATAGATTACATTCTCTATGGCTATGAAATTTCAGAAATGACTAAAATTTGAGAGTTTTCAACTCAAATTCAGTCCAAATTATGTATTTGCAATAGCTAATGGACAGTACCAATCTTAATTTTAGGCAGATATATCTCTTGGAGATGTTTTTTATGTGCTGACGAAAACTATTTATTACTCGCATTTTCAGATTACAGGAGATGGGTGCTCTAGAAGTAGATAAAGTGGTTCATGAACACGAAGGTTGGCGCCTTGTCTCTTGTATATGGTTGCATGGTGGGGCTATCCATGTACTTGCCAACATGTTGAGTCTTCTTTTTATTGGAATTCGGCTTGAACAAGAATTTGGATTTGGTATGGTTCTGGTAATTATCCTTGCATTGTTCAAGTATATCGTTATATTTCTTCCGACCAACAGTATTCCATTATCTGTATTTATATCATTGTTTTTACATAAATGTTCTGGAAGAAAAGAAACTCAGCTGAGTTTATTTAGCAATGAAATCAATAAAAAAGCTTTGTTGTCGATTGTAATTTCTACCTTTCTTGTCCTTTCGCAGTTAGAATTGGATTTCTCTATGTGATATCTGGTTTTGGAGGGAGTTTGCTGTCTGCGTTATTCATACAAACGGGCATCTCAGTTGGTGCATCTGGTGCATTGTTTGGCTTACTCGGAGGGATGCTCTCAGAGCTCTTCATTAATTGGACGATATATGCCAATAAGGTGAATGAACTAAAAAAATTGTTCAATTCAACAGTGCTTCCTGATAAATAATTTATTGTCTTTGCGGTCTGCGCCTAAACCATTCTATTTCTTTCCATTTTGTCTCATGATGTTTTGCAGATGGCTGCATTGTTGACTCTTATAGTCATTGTTGTAATAAATTTAGCTGTTGGAGTCCTTCCACATGTTGACAATTTCGCTCATCTAGGAGGATTTGGTTCTGGCTTTCTGCTTGGATTTGTCCTTTTGATTCGTCCTCAGTTTAAATGGATAAGCCAACAACAGTCTAAATCTGGATCTCATGCATTTTCTGTTAAACACAATAAGTACTTACCTTATCAATATGTGTTGTGGGTTTTGTCTTTCCTATTACTCATTGCAGGGTAAGTTTGTTTTAGTTTTCTTTTCTCTTTTGTATATTACCTTTAATATTCTTAGGACTTGGATACTCTTTTCACAAATATTTTGTTTGTAGAGATTGAATTTATGTTATTGCTTGTAAAGTAGTATTTAATCTAAAGTTGGATAATTTTGACAGATTCATTACTGGGATGGTTCTACTCTTTCGAGGTGTTAACTTGAATGAACGTTGCTCGTGGTGTCATTATTTAAGTTGTGTTCCTACCTCAAAATGGAGTTGTCAGGAACAAAGCATTTATTGTGAG
Protein sequence

>MS.gene052104.t1

MSGGRNPHGGTTVEVKVHPRRGSPSSSSSNPPVTRDRDFRLFKQWVPWLVPTFVFANVIIFIVTMYVNDCPENAFHGTCVAPFLGRFSFQPLKENPLFGPSSFTLQEMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELFINWTIYANKMAALLTLIVIVVINLAVGVLPHVDNFAHLGGFGSGFLLGFVLLIRPQFKWISQQQSKSGSHAFSVKHNKYLPYQYVLWVLSFLLLIAGFITGMVLLFRGVNLNERCSWCHYLSCVPTSKWSCQEQSIYCE