AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052102.t1 MTR_2g097210 96.501 343 11 1 1 343 1 342 0.0 677
MS.gene052102.t1 MTR_2g097210 96.346 301 10 1 1 301 1 300 0.0 586
MS.gene052102.t1 MTR_4g021755 64.706 306 105 2 37 342 34 336 1.09e-150 430
MS.gene052102.t1 MTR_7g498280 59.412 340 122 3 1 338 1 326 4.60e-128 370
MS.gene052102.t1 MTR_7g061780 61.311 305 112 3 23 326 4 303 2.86e-125 363
MS.gene052102.t1 MTR_1g101310 53.191 329 135 3 16 339 5 319 4.79e-114 333
MS.gene052102.t1 MTR_2g103600 55.636 275 114 3 44 312 30 302 2.18e-99 296
MS.gene052102.t1 MTR_3g073530 40.533 338 188 5 13 343 9 340 1.37e-79 248
MS.gene052102.t1 MTR_2g088290 36.462 277 116 7 65 340 1 218 7.73e-43 148
MS.gene052102.t1 MTR_2g088315 49.398 83 42 0 108 190 1 83 2.07e-20 84.7
MS.gene052102.t1 MTR_8g106030 37.931 145 73 3 177 320 99 227 9.23e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052102.t1 AT2G29050 63.905 338 119 2 6 343 15 349 3.31e-157 446
MS.gene052102.t1 AT3G53780 62.662 308 107 2 35 342 54 353 1.59e-137 396
MS.gene052102.t1 AT1G63120 63.946 294 98 2 44 335 30 317 2.93e-129 372
MS.gene052102.t1 AT2G29050 58.104 327 106 3 6 304 15 338 2.78e-126 366
MS.gene052102.t1 AT5G07250 60.061 328 116 3 21 337 22 345 2.00e-125 363
MS.gene052102.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052102.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052102.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052102.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052102.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene052102.t1 AT3G53780 62.547 267 92 2 35 301 54 312 1.29e-114 335
MS.gene052102.t1 AT3G53780 63.559 236 80 1 108 343 1 230 9.98e-108 316
MS.gene052102.t1 AT1G52580 54.545 297 126 6 20 311 4 296 6.52e-98 292
MS.gene052102.t1 AT4G23070 55.326 291 125 2 44 334 28 313 2.37e-94 283
MS.gene052102.t1 AT5G07250 49.695 328 103 4 21 337 22 298 4.31e-89 270
MS.gene052102.t1 AT1G77860 45.151 299 159 4 48 343 49 345 3.77e-85 261
MS.gene052102.t1 AT1G77860 45.151 299 159 4 48 343 49 345 8.09e-85 261
MS.gene052102.t1 AT1G12750 60.000 185 72 1 32 214 5 189 6.47e-77 235
MS.gene052102.t1 AT1G12750 59.574 188 74 1 32 217 5 192 9.39e-77 234

Find 83 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGCTTGAACAAGAATT+TGG 0.175005 2.3:+5660009 MS.gene052102:CDS
TGATTCGTCCTCAGTTTAAA+TGG 0.238851 2.3:+5660654 MS.gene052102:CDS
CTCTATGTGATATCTGGTTT+TGG 0.246364 2.3:+5660257 MS.gene052102:CDS
GGATTTCTCTATGTGATATC+TGG 0.262897 2.3:+5660251 MS.gene052102:CDS
TCTCAGAGCTCTTCATTAAT+TGG 0.278075 2.3:+5660366 MS.gene052102:CDS
TCTTTCCTATTACTCATTGC+AGG 0.286895 2.3:+5660767 MS.gene052102:CDS
CTTACCCTGCAATGAGTAAT+AGG 0.292148 2.3:-5660772 None:intergenic
TTCGCTCATCTAGGAGGATT+TGG 0.297054 2.3:+5660602 MS.gene052102:CDS
GGCGCCTTGTCTCTTGTATA+TGG 0.304879 2.3:+5659929 MS.gene052102:CDS
CTTGAACAAGAATTTGGATT+TGG 0.310501 2.3:+5660015 MS.gene052102:CDS
CATCTAGGAGGATTTGGTTC+TGG 0.319719 2.3:+5660608 MS.gene052102:CDS
TCACTCGTGATCGTGATTTC+AGG 0.355861 2.3:+5658789 MS.gene052102:CDS
CTTAAAGAAAACCCTCTCTT+TGG 0.366436 2.3:+5658965 MS.gene052102:CDS
TGGCACCACCGTTGAGGTTA+AGG 0.367443 2.3:+5658718 MS.gene052102:CDS
GGCATCTCAGTTGGTGCATC+TGG 0.372637 2.3:+5660314 MS.gene052102:CDS
TTTGGTTCTGGCTTTCTGCT+TGG 0.373387 2.3:+5660620 MS.gene052102:CDS
CTTGTATATGGTTGCATGGT+GGG 0.379600 2.3:+5659941 MS.gene052102:CDS
TGTCCTTTCGCAGTTAGAAT+TGG 0.379685 2.3:+5660230 MS.gene052102:intron
TTGGACGATATATGCCAATA+AGG 0.382911 2.3:+5660385 MS.gene052102:CDS
GGTGCATCTGGTGCATTGTT+TGG 0.382955 2.3:+5660326 MS.gene052102:CDS
AGCCAACAACAGTCTAAATC+TGG 0.385356 2.3:+5660680 MS.gene052102:CDS
ACCTTATCAATATGTGTTGT+GGG 0.394616 2.3:+5660739 MS.gene052102:CDS
ATCCAGATTTAGACTGTTGT+TGG 0.400472 2.3:-5660682 None:intergenic
GTTGTGTTCCTACCTCAAAA+TGG 0.409054 2.3:+5661019 MS.gene052102:CDS
GTTGTAATAAATTTAGCTGT+TGG 0.441288 2.3:+5660557 MS.gene052102:CDS
GTCTGCGTTATTCATACAAA+CGG 0.445629 2.3:+5660292 MS.gene052102:CDS
TGTCCTGAGAATGCATTTCA+TGG 0.455723 2.3:+5658899 MS.gene052102:CDS
TACCTTATCAATATGTGTTG+TGG 0.455869 2.3:+5660738 MS.gene052102:CDS
GGTGCATTGTTTGGCTTACT+CGG 0.462230 2.3:+5660335 MS.gene052102:CDS
TTTCAGGCTCTTTAAGCAAT+GGG 0.470163 2.3:+5658805 MS.gene052102:CDS
GTTGACAATTTCGCTCATCT+AGG 0.472592 2.3:+5660593 MS.gene052102:CDS
GTCTCTTGTATATGGTTGCA+TGG 0.482616 2.3:+5659937 MS.gene052102:CDS
AAGGAGAATCTTCCAAGAAA+AGG 0.495328 2.3:-5658935 None:intergenic
TCTTTAAGCAATGGGTTCCA+TGG 0.504864 2.3:+5658813 MS.gene052102:CDS
ACCCACAACACATATTGATA+AGG 0.507027 2.3:-5660740 None:intergenic
TACCTCAAAATGGAGTTGTC+AGG 0.507679 2.3:+5661029 MS.gene052102:CDS
GGGATGGTTCTACTCTTTCG+AGG 0.511587 2.3:+5660955 MS.gene052102:CDS
ATTTCAGGCTCTTTAAGCAA+TGG 0.516293 2.3:+5658804 MS.gene052102:CDS
CATTGTTTGGCTTACTCGGA+GGG 0.524954 2.3:+5660339 MS.gene052102:CDS
ACGTTGGCAAACACAAAAGT+TGG 0.526318 2.3:-5658842 None:intergenic
CTTTCCTATTACTCATTGCA+GGG 0.535119 2.3:+5660768 MS.gene052102:CDS
GTACCATGAAATGCATTCTC+AGG 0.536653 2.3:-5658902 None:intergenic
TCAACATGTTGGCAAGTACA+TGG 0.537008 2.3:-5659969 None:intergenic
AAATCACGATCACGAGTGAC+GGG 0.541550 2.3:-5658785 None:intergenic
TGACAGATTCATTACTGGGA+TGG 0.543513 2.3:+5660939 MS.gene052102:intron
TAAACTGAGGACGAATCAAA+AGG 0.544513 2.3:-5660649 None:intergenic
TGCTCTAGAAGTAGATAAAG+TGG 0.545530 2.3:+5659888 MS.gene052102:CDS
AAAACTCACGTAAAGGAAGA+AGG 0.547703 2.3:-5658989 None:intergenic
GACAATTTCGCTCATCTAGG+AGG 0.549429 2.3:+5660596 MS.gene052102:CDS
TCTGCGTTATTCATACAAAC+GGG 0.553724 2.3:+5660293 MS.gene052102:CDS
ACAAAAGTTGGAACAAGCCA+TGG 0.556908 2.3:-5658830 None:intergenic
ATACAAACGGGCATCTCAGT+TGG 0.569101 2.3:+5660305 MS.gene052102:CDS
GAAATCACGATCACGAGTGA+CGG 0.572889 2.3:-5658786 None:intergenic
ACGACGAAGACGGAGACCCA+CGG 0.573842 2.3:-5658751 None:intergenic
TCAACGGTGGTGCCACCATG+TGG 0.575383 2.3:-5658710 None:intergenic
AAATCATAATCATGAGTGGA+GGG 0.582372 2.3:+5658681 None:intergenic
TTGTATATGGTTGCATGGTG+GGG 0.585338 2.3:+5659942 MS.gene052102:CDS
AGGAAGAAGGACCAAAGAGA+GGG 0.589526 2.3:-5658976 None:intergenic
TGGTTCATGAACACGAAGGT+TGG 0.597343 2.3:+5659908 MS.gene052102:CDS
AACAATGAAAATAATAACGT+TGG 0.597447 2.3:-5658858 None:intergenic
GGAACAAAGCATTTATTGTG+AGG 0.597670 2.3:+5661050 MS.gene052102:CDS
TTAAGGTTCATCCTCGCCGT+GGG 0.597978 2.3:+5658735 MS.gene052102:CDS
TCTTGTATATGGTTGCATGG+TGG 0.604832 2.3:+5659940 MS.gene052102:CDS
GCATTGTTTGGCTTACTCGG+AGG 0.606501 2.3:+5660338 MS.gene052102:CDS
GTTAAGGTTCATCCTCGCCG+TGG 0.606777 2.3:+5658734 MS.gene052102:CDS
CGAAATTGTCAACATGTGGA+AGG 0.611940 2.3:-5660583 None:intergenic
TGAGCGAAATTGTCAACATG+TGG 0.615330 2.3:-5660587 None:intergenic
GGATTCGACGACGACGAAGA+CGG 0.615599 2.3:-5658761 None:intergenic
CAACGGTGGTGCCACCATGT+GGG 0.618108 2.3:-5658709 None:intergenic
ACATGGTGGCACCACCGTTG+AGG 0.621441 2.3:+5658712 MS.gene052102:CDS
AAGGAAGAAGGACCAAAGAG+AGG 0.633246 2.3:-5658977 None:intergenic
TGGCTTATCCATTTAAACTG+AGG 0.633333 2.3:-5660662 None:intergenic
AAAATCATAATCATGAGTGG+AGG 0.633390 2.3:+5658680 None:intergenic
TCACGATCACGAGTGACGGG+AGG 0.634822 2.3:-5658782 None:intergenic
ACTTGAATGAACGTTGCTCG+TGG 0.663668 2.3:+5660983 MS.gene052102:CDS
AGGATGAACCTTAACCTCAA+CGG 0.671763 2.3:-5658726 None:intergenic
TCATAATCATGAGTGGAGGG+AGG 0.674267 2.3:+5658684 None:intergenic
GAAGACGGAGACCCACGGCG+AGG 0.680052 2.3:-5658746 None:intergenic
AGTGGAGGGAGGAACCCACA+TGG 0.690830 2.3:+5658695 MS.gene052102:CDS
GCAACCATATACAAGAGACA+AGG 0.709780 2.3:-5659933 None:intergenic
ATGAACCTTAACCTCAACGG+TGG 0.726735 2.3:-5658723 None:intergenic
GGAGGGAGGAACCCACATGG+TGG 0.736064 2.3:+5658698 MS.gene052102:CDS
AAAGTGGTTCATGAACACGA+AGG 0.793505 2.3:+5659904 MS.gene052102:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGACAATAAATTATTTATC+AGG - chr2.3:5660449-5660468 None:intergenic 15.0%
!! AATGATATAAATACAGATAA+TGG - chr2.3:5660108-5660127 None:intergenic 15.0%
!! ATATTACCTTTAATATTCTT+AGG + chr2.3:5660823-5660842 MS.gene052102:intron 15.0%
!! TAAATAATTTATTGTCTTTG+CGG + chr2.3:5660451-5660470 MS.gene052102:intron 15.0%
!! AACAATGAAAATAATAACGT+TGG - chr2.3:5658861-5658880 None:intergenic 20.0%
!! ATGAACATGTGTTTATAAAT+GGG + chr2.3:5659438-5659457 MS.gene052102:intron 20.0%
!! TACATTAATCAAGTTATGAT+TGG + chr2.3:5659095-5659114 MS.gene052102:intron 20.0%
!!! AGTAGTATTTAATCTAAAGT+TGG + chr2.3:5660909-5660928 MS.gene052102:intron 20.0%
!!! TTGTTTTTACATAAATGTTC+TGG + chr2.3:5660126-5660145 MS.gene052102:intron 20.0%
! CAAAATGGAAAGAAATAGAA+TGG - chr2.3:5660489-5660508 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG + chr2.3:5659437-5659456 MS.gene052102:intron 25.0%
! GCTATTGCAAATACATAATT+TGG - chr2.3:5659759-5659778 None:intergenic 25.0%
! GTTGTAATAAATTTAGCTGT+TGG + chr2.3:5660557-5660576 MS.gene052102:CDS 25.0%
! TATCTGCCTAAAATTAAGAT+TGG - chr2.3:5659794-5659813 None:intergenic 25.0%
! TATGTATTTGCAATAGCTAA+TGG + chr2.3:5659762-5659781 MS.gene052102:intron 25.0%
! TGAACATGTGTTTATAAATG+GGG + chr2.3:5659439-5659458 MS.gene052102:intron 25.0%
! TTAATCAAGTTATGATTGGT+TGG + chr2.3:5659099-5659118 MS.gene052102:intron 25.0%
! TTCATAGATTACATTCTCTA+TGG + chr2.3:5659680-5659699 MS.gene052102:intron 25.0%
!! ACAGTACCAATCTTAATTTT+AGG + chr2.3:5659785-5659804 MS.gene052102:intron 25.0%
!! ATGTTGAGTCTTCTTTTTAT+TGG + chr2.3:5659985-5660004 MS.gene052102:CDS 25.0%
!! GTCTTCTTTTTATTGGAATT+CGG + chr2.3:5659992-5660011 MS.gene052102:CDS 25.0%
!!! AATTTTGACAGATTCATTAC+TGG + chr2.3:5660934-5660953 MS.gene052102:intron 25.0%
!!! ATTTTGACAGATTCATTACT+GGG + chr2.3:5660935-5660954 MS.gene052102:intron 25.0%
!!! TTTTAGTTCATTCACCTTAT+TGG - chr2.3:5660402-5660421 None:intergenic 25.0%
AAAAACCTAATAGATGTGTG+AGG + chr2.3:5659621-5659640 MS.gene052102:intron 30.0%
AAAAAGAAGACTCAACATGT+TGG - chr2.3:5659983-5660002 None:intergenic 30.0%
AAAACCTAATAGATGTGTGA+GGG + chr2.3:5659622-5659641 MS.gene052102:intron 30.0%
AACAAAAACGTGTGTTTGTA+AGG + chr2.3:5659580-5659599 MS.gene052102:intron 30.0%
AACATGTGTTTATAAATGGG+GGG + chr2.3:5659441-5659460 MS.gene052102:intron 30.0%
ACCTTATCAATATGTGTTGT+GGG + chr2.3:5660739-5660758 MS.gene052102:CDS 30.0%
CAAAACATCATGAGACAAAA+TGG - chr2.3:5660504-5660523 None:intergenic 30.0%
CCAAGTCCTAAGAATATTAA+AGG - chr2.3:5660832-5660851 None:intergenic 30.0%
CCTTTAATATTCTTAGGACT+TGG + chr2.3:5660829-5660848 MS.gene052102:intron 30.0%
CTTGAACAAGAATTTGGATT+TGG + chr2.3:5660015-5660034 MS.gene052102:CDS 30.0%
GAAAAAGAAAACTCACGTAA+AGG - chr2.3:5658999-5659018 None:intergenic 30.0%
GAACATGTGTTTATAAATGG+GGG + chr2.3:5659440-5659459 MS.gene052102:intron 30.0%
GAATGTAATCTATGAATCAC+CGG - chr2.3:5659676-5659695 None:intergenic 30.0%
GGAAAGAAATAGAATGGTTT+AGG - chr2.3:5660483-5660502 None:intergenic 30.0%
TACCTTATCAATATGTGTTG+TGG + chr2.3:5660738-5660757 MS.gene052102:CDS 30.0%
TGAGAATGAGTTTATTAGTG+TGG + chr2.3:5659220-5659239 MS.gene052102:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG - chr2.3:5659526-5659545 None:intergenic 30.0%
! ACAAGAATTTGGATTTGGTA+TGG + chr2.3:5660020-5660039 MS.gene052102:intron 30.0%
! ACACTTTAGATGTCTAAGAT+TGG + chr2.3:5659373-5659392 MS.gene052102:intron 30.0%
! ACTTTAGATGTCTAAGATTG+GGG + chr2.3:5659375-5659394 MS.gene052102:intron 30.0%
! ATTTTCAGATTACAGGAGAT+GGG + chr2.3:5659865-5659884 MS.gene052102:intron 30.0%
! CACTTTAGATGTCTAAGATT+GGG + chr2.3:5659374-5659393 MS.gene052102:intron 30.0%
! GTTTTCTTTAAGTGGTTGAA+AGG - chr2.3:5658957-5658976 None:intergenic 30.0%
! TTTTAGGCAGATATATCTCT+TGG + chr2.3:5659801-5659820 MS.gene052102:intron 30.0%
!! AGTTAAATTGATTCGAGCTA+AGG + chr2.3:5659470-5659489 MS.gene052102:intron 30.0%
!! GTTAAATTGATTCGAGCTAA+GGG + chr2.3:5659471-5659490 MS.gene052102:intron 30.0%
!! TACAGATAATGGAATACTGT+TGG - chr2.3:5660097-5660116 None:intergenic 30.0%
AAAACTCACGTAAAGGAAGA+AGG - chr2.3:5658992-5659011 None:intergenic 35.0%
AAGGAGAATCTTCCAAGAAA+AGG - chr2.3:5658938-5658957 None:intergenic 35.0%
AATCCAATTCTAACTGCGAA+AGG - chr2.3:5660236-5660255 None:intergenic 35.0%
ACCCACAACACATATTGATA+AGG - chr2.3:5660743-5660762 None:intergenic 35.0%
ATCCAGATTTAGACTGTTGT+TGG - chr2.3:5660685-5660704 None:intergenic 35.0%
ATTTCAGGCTCTTTAAGCAA+TGG + chr2.3:5658804-5658823 MS.gene052102:CDS 35.0%
CGATATACTTGAACAATGCA+AGG - chr2.3:5660059-5660078 None:intergenic 35.0%
CTTAAAGAAAACCCTCTCTT+TGG + chr2.3:5658965-5658984 MS.gene052102:CDS 35.0%
CTTTCCTATTACTCATTGCA+GGG + chr2.3:5660768-5660787 MS.gene052102:CDS 35.0%
GGATTTCTCTATGTGATATC+TGG + chr2.3:5660251-5660270 MS.gene052102:CDS 35.0%
GTCTGCGTTATTCATACAAA+CGG + chr2.3:5660292-5660311 MS.gene052102:CDS 35.0%
TAAACTGAGGACGAATCAAA+AGG - chr2.3:5660652-5660671 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+GGG - chr2.3:5659525-5659544 None:intergenic 35.0%
TCTCAGAGCTCTTCATTAAT+TGG + chr2.3:5660366-5660385 MS.gene052102:CDS 35.0%
TCTGCGTTATTCATACAAAC+GGG + chr2.3:5660293-5660312 MS.gene052102:CDS 35.0%
TCTTTCCTATTACTCATTGC+AGG + chr2.3:5660767-5660786 MS.gene052102:CDS 35.0%
TGATTCGTCCTCAGTTTAAA+TGG + chr2.3:5660654-5660673 MS.gene052102:CDS 35.0%
TGGCTTATCCATTTAAACTG+AGG - chr2.3:5660665-5660684 None:intergenic 35.0%
TTGGACGATATATGCCAATA+AGG + chr2.3:5660385-5660404 MS.gene052102:CDS 35.0%
TTTCAGGCTCTTTAAGCAAT+GGG + chr2.3:5658805-5658824 MS.gene052102:CDS 35.0%
! AAGAGAGGGTTTTCTTTAAG+TGG - chr2.3:5658965-5658984 None:intergenic 35.0%
! ATTCGGCTTGAACAAGAATT+TGG + chr2.3:5660009-5660028 MS.gene052102:CDS 35.0%
! ATTTGGATTTGGTATGGTTC+TGG + chr2.3:5660026-5660045 MS.gene052102:intron 35.0%
! CATTTTCAGATTACAGGAGA+TGG + chr2.3:5659864-5659883 MS.gene052102:intron 35.0%
! CTTTAGATGTCTAAGATTGG+GGG + chr2.3:5659376-5659395 MS.gene052102:intron 35.0%
! TACTCGCATTTTCAGATTAC+AGG + chr2.3:5659858-5659877 MS.gene052102:intron 35.0%
!! CTCTATGTGATATCTGGTTT+TGG + chr2.3:5660257-5660276 MS.gene052102:CDS 35.0%
!! GATAATGGAATACTGTTGGT+CGG - chr2.3:5660093-5660112 None:intergenic 35.0%
!! TGCTCTAGAAGTAGATAAAG+TGG + chr2.3:5659888-5659907 MS.gene052102:CDS 35.0%
!!! ATGTGATATCTGGTTTTGGA+GGG + chr2.3:5660261-5660280 MS.gene052102:CDS 35.0%
!!! TATGTGATATCTGGTTTTGG+AGG + chr2.3:5660260-5660279 MS.gene052102:CDS 35.0%
AAAGTGGTTCATGAACACGA+AGG + chr2.3:5659904-5659923 MS.gene052102:CDS 40.0%
ACAAAAGTTGGAACAAGCCA+TGG - chr2.3:5658833-5658852 None:intergenic 40.0%
ACAACCCTCACACATCTATT+AGG - chr2.3:5659629-5659648 None:intergenic 40.0%
ACGTTGGCAAACACAAAAGT+TGG - chr2.3:5658845-5658864 None:intergenic 40.0%
AGCCAACAACAGTCTAAATC+TGG + chr2.3:5660680-5660699 MS.gene052102:CDS 40.0%
AGGATGAACCTTAACCTCAA+CGG - chr2.3:5658729-5658748 None:intergenic 40.0%
CGAAATTGTCAACATGTGGA+AGG - chr2.3:5660586-5660605 None:intergenic 40.0%
CTTACCCTGCAATGAGTAAT+AGG - chr2.3:5660775-5660794 None:intergenic 40.0%
CTTGTATATGGTTGCATGGT+GGG + chr2.3:5659941-5659960 MS.gene052102:CDS 40.0%
GCAACCATATACAAGAGACA+AGG - chr2.3:5659936-5659955 None:intergenic 40.0%
GCCTAACTCATTCACAAAAC+TGG - chr2.3:5659265-5659284 None:intergenic 40.0%
GTACCATGAAATGCATTCTC+AGG - chr2.3:5658905-5658924 None:intergenic 40.0%
GTCTCTTGTATATGGTTGCA+TGG + chr2.3:5659937-5659956 MS.gene052102:CDS 40.0%
GTGTGTTTGTAAGGATGCAT+AGG + chr2.3:5659589-5659608 MS.gene052102:intron 40.0%
GTGTTTATAAATGGGGGGTT+GGG + chr2.3:5659446-5659465 MS.gene052102:intron 40.0%
GTTGACAATTTCGCTCATCT+AGG + chr2.3:5660593-5660612 MS.gene052102:CDS 40.0%
GTTGTGTTCCTACCTCAAAA+TGG + chr2.3:5661019-5661038 MS.gene052102:CDS 40.0%
TAACTGCGAAAGGACAAGAA+AGG - chr2.3:5660226-5660245 None:intergenic 40.0%
TACCTCAAAATGGAGTTGTC+AGG + chr2.3:5661029-5661048 MS.gene052102:CDS 40.0%
TCAACATGTTGGCAAGTACA+TGG - chr2.3:5659972-5659991 None:intergenic 40.0%
TCTTGTATATGGTTGCATGG+TGG + chr2.3:5659940-5659959 MS.gene052102:CDS 40.0%
TGACAGATTCATTACTGGGA+TGG + chr2.3:5660939-5660958 MS.gene052102:intron 40.0%
TGAGCGAAATTGTCAACATG+TGG - chr2.3:5660590-5660609 None:intergenic 40.0%
TGTCCTGAGAATGCATTTCA+TGG + chr2.3:5658899-5658918 MS.gene052102:CDS 40.0%
TGTCCTTTCGCAGTTAGAAT+TGG + chr2.3:5660230-5660249 MS.gene052102:intron 40.0%
TGTGTTTATAAATGGGGGGT+TGG + chr2.3:5659445-5659464 MS.gene052102:intron 40.0%
TTGTATATGGTTGCATGGTG+GGG + chr2.3:5659942-5659961 MS.gene052102:CDS 40.0%
! ATGTCTAAGATTGGGGGTAA+GGG + chr2.3:5659382-5659401 MS.gene052102:intron 40.0%
! GTCTCATGATGTTTTGCAGA+TGG + chr2.3:5660508-5660527 MS.gene052102:intron 40.0%
! TCTTTAAGCAATGGGTTCCA+TGG + chr2.3:5658813-5658832 MS.gene052102:CDS 40.0%
! TTCCTGACAACTCCATTTTG+AGG - chr2.3:5661034-5661053 None:intergenic 40.0%
!! ACTTGTGTTGCTCCTTTTCT+TGG + chr2.3:5658923-5658942 MS.gene052102:CDS 40.0%
!! GCCAGTTTTGTGAATGAGTT+AGG + chr2.3:5659261-5659280 MS.gene052102:intron 40.0%
!!! TGACAACTCCATTTTGAGGT+AGG - chr2.3:5661030-5661049 None:intergenic 40.0%
AAATCACGATCACGAGTGAC+GGG - chr2.3:5658788-5658807 None:intergenic 45.0%
AAGGAAGAAGGACCAAAGAG+AGG - chr2.3:5658980-5658999 None:intergenic 45.0%
ACTTGAATGAACGTTGCTCG+TGG + chr2.3:5660983-5661002 MS.gene052102:CDS 45.0%
AGGAAGAAGGACCAAAGAGA+GGG - chr2.3:5658979-5658998 None:intergenic 45.0%
ATACAAACGGGCATCTCAGT+TGG + chr2.3:5660305-5660324 MS.gene052102:CDS 45.0%
ATGAACCTTAACCTCAACGG+TGG - chr2.3:5658726-5658745 None:intergenic 45.0%
CGAGCTAAGGGATAAGAAGT+TGG + chr2.3:5659483-5659502 MS.gene052102:intron 45.0%
GAAATCACGATCACGAGTGA+CGG - chr2.3:5658789-5658808 None:intergenic 45.0%
GACAATTTCGCTCATCTAGG+AGG + chr2.3:5660596-5660615 MS.gene052102:CDS 45.0%
GCTAAGGGATAAGAAGTTGG+AGG + chr2.3:5659486-5659505 MS.gene052102:intron 45.0%
TCACTCGTGATCGTGATTTC+AGG + chr2.3:5658789-5658808 MS.gene052102:CDS 45.0%
TCTTGTGTCTGTGTCTCTAC+CGG + chr2.3:5659654-5659673 MS.gene052102:intron 45.0%
TGGTTCATGAACACGAAGGT+TGG + chr2.3:5659908-5659927 MS.gene052102:CDS 45.0%
TTCGCTCATCTAGGAGGATT+TGG + chr2.3:5660602-5660621 MS.gene052102:CDS 45.0%
! CATCTAAAGTGTGACTCGTG+TGG - chr2.3:5659365-5659384 None:intergenic 45.0%
! CATCTAGGAGGATTTGGTTC+TGG + chr2.3:5660608-5660627 MS.gene052102:CDS 45.0%
! CATTGTTTGGCTTACTCGGA+GGG + chr2.3:5660339-5660358 MS.gene052102:CDS 45.0%
! GATGTCTAAGATTGGGGGTA+AGG + chr2.3:5659381-5659400 MS.gene052102:intron 45.0%
! GGTGCATTGTTTGGCTTACT+CGG + chr2.3:5660335-5660354 MS.gene052102:CDS 45.0%
!! GGAGGTTCTAAGTTCAAACC+CGG + chr2.3:5659504-5659523 MS.gene052102:intron 45.0%
!! TTTGGTTCTGGCTTTCTGCT+TGG + chr2.3:5660620-5660639 MS.gene052102:CDS 45.0%
CTAAGTTCAAACCCGGACGA+AGG + chr2.3:5659511-5659530 MS.gene052102:intron 50.0%
GCTATCTGGCCACCATTATC+AGG + chr2.3:5659339-5659358 MS.gene052102:intron 50.0%
GGCGCCTTGTCTCTTGTATA+TGG + chr2.3:5659929-5659948 MS.gene052102:CDS 50.0%
GGTGCATCTGGTGCATTGTT+TGG + chr2.3:5660326-5660345 MS.gene052102:CDS 50.0%
TGACTCGTGTGGCCTGATAA+TGG - chr2.3:5659354-5659373 None:intergenic 50.0%
TTAAGGTTCATCCTCGCCGT+GGG + chr2.3:5658735-5658754 MS.gene052102:CDS 50.0%
! GATAATGGTGGCCAGATAGC+AGG - chr2.3:5659339-5659358 None:intergenic 50.0%
! GCATTGTTTGGCTTACTCGG+AGG + chr2.3:5660338-5660357 MS.gene052102:CDS 50.0%
! GGGATGGTTCTACTCTTTCG+AGG + chr2.3:5660955-5660974 MS.gene052102:CDS 50.0%
AATGGTGGCCAGATAGCAGG+CGG - chr2.3:5659336-5659355 None:intergenic 55.0%
CCAGATAGCAGGCGGTTCAA+TGG - chr2.3:5659328-5659347 None:intergenic 55.0%
CCATTGAACCGCCTGCTATC+TGG + chr2.3:5659325-5659344 MS.gene052102:intron 55.0%
GCAGGCGGTTCAATGGATCT+TGG - chr2.3:5659321-5659340 None:intergenic 55.0%
GGATTCGACGACGACGAAGA+CGG - chr2.3:5658764-5658783 None:intergenic 55.0%
GTTAAGGTTCATCCTCGCCG+TGG + chr2.3:5658734-5658753 MS.gene052102:CDS 55.0%
TGGCACCACCGTTGAGGTTA+AGG + chr2.3:5658718-5658737 MS.gene052102:CDS 55.0%
! GGCATCTCAGTTGGTGCATC+TGG + chr2.3:5660314-5660333 MS.gene052102:CDS 55.0%
!! CTCGTGTGGCCTGATAATGG+TGG - chr2.3:5659351-5659370 None:intergenic 55.0%
ACATGGTGGCACCACCGTTG+AGG + chr2.3:5658712-5658731 MS.gene052102:CDS 60.0%
ACGACGAAGACGGAGACCCA+CGG - chr2.3:5658754-5658773 None:intergenic 60.0%
AGTGGAGGGAGGAACCCACA+TGG + chr2.3:5658695-5658714 MS.gene052102:CDS 60.0%
! TCACGATCACGAGTGACGGG+AGG - chr2.3:5658785-5658804 None:intergenic 60.0%
!! CAACGGTGGTGCCACCATGT+GGG - chr2.3:5658712-5658731 None:intergenic 60.0%
!! TCAACGGTGGTGCCACCATG+TGG - chr2.3:5658713-5658732 None:intergenic 60.0%
GGAGGGAGGAACCCACATGG+TGG + chr2.3:5658698-5658717 MS.gene052102:CDS 65.0%
GAAGACGGAGACCCACGGCG+AGG - chr2.3:5658749-5658768 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5658692 5661071 5658692 ID=MS.gene052102
chr2.3 mRNA 5658692 5661071 5658692 ID=MS.gene052102.t1;Parent=MS.gene052102
chr2.3 exon 5658692 5659002 5658692 ID=MS.gene052102.t1.exon1;Parent=MS.gene052102.t1
chr2.3 CDS 5658692 5659002 5658692 ID=cds.MS.gene052102.t1;Parent=MS.gene052102.t1
chr2.3 exon 5659873 5660036 5659873 ID=MS.gene052102.t1.exon2;Parent=MS.gene052102.t1
chr2.3 CDS 5659873 5660036 5659873 ID=cds.MS.gene052102.t1;Parent=MS.gene052102.t1
chr2.3 exon 5660243 5660406 5660243 ID=MS.gene052102.t1.exon3;Parent=MS.gene052102.t1
chr2.3 CDS 5660243 5660406 5660243 ID=cds.MS.gene052102.t1;Parent=MS.gene052102.t1
chr2.3 exon 5660527 5660789 5660527 ID=MS.gene052102.t1.exon4;Parent=MS.gene052102.t1
chr2.3 CDS 5660527 5660789 5660527 ID=cds.MS.gene052102.t1;Parent=MS.gene052102.t1
chr2.3 exon 5660945 5661071 5660945 ID=MS.gene052102.t1.exon5;Parent=MS.gene052102.t1
chr2.3 CDS 5660945 5661071 5660945 ID=cds.MS.gene052102.t1;Parent=MS.gene052102.t1
Gene Sequence

>MS.gene052102

ATGAGTGGAGGGAGGAACCCACATGGTGGCACCACCGTTGAGGTTAAGGTTCATCCTCGCCGTGGGTCTCCGTCTTCGTCGTCGTCGAATCCTCCCGTCACTCGTGATCGTGATTTCAGGCTCTTTAAGCAATGGGTTCCATGGCTTGTTCCAACTTTTGTGTTTGCCAACGTTATTATTTTCATTGTTACAATGTATGTTAATGATTGTCCTGAGAATGCATTTCATGGTACTTGTGTTGCTCCTTTTCTTGGAAGATTCTCCTTTCAACCACTTAAAGAAAACCCTCTCTTTGGTCCTTCTTCCTTTACGTGAGTTTTCTTTTTCTCTTTATCTTTTCATCTTATCATACAATACAATTACAATGTTTTATTTTTTTTTTATTTTATTTTAATTACAATTTTACATTAATCAAGTTATGATTGGTTGGTTCTTATGATGCATGTAGTTACATTCAATTATTCTATTTTCTCAAATTATTACATGTGTTGATGTTGTTAAGAGTCTTGCATTAGATGAGATGTAGCTTGAGAATGAGTTTATTAGTGTGGATAATCGTCATTTTGCAAGCCAGTTTTGTGAATGAGTTAGGCATAATTGAAATTTTAAGATGTATCAGAGTTTTTCCAAGATCCATTGAACCGCCTGCTATCTGGCCACCATTATCAGGCCACACGAGTCACACTTTAGATGTCTAAGATTGGGGGTAAGGGTGTGTTAAGAGTCTCACATTGAATGAGATAGACATGAACATGTGTTTATAAATGGGGGGTTGGGTAGTTAAATTGATTCGAGCTAAGGGATAAGAAGTTGGAGGTTCTAAGTTCAAACCCGGACGAAGGAGTAAATATTAATATAACAACTAATTGCTAACACTTGTCATTCAGAAACAAAAACGTGTGTTTGTAAGGATGCATAGGTTCAATATAAAAAACCTAATAGATGTGTGAGGGTTGTGTTTATCTTGTGTCTGTGTCTCTACCGGTGATTCATAGATTACATTCTCTATGGCTATGAAATTTCAGAAATGACTAAAATTTGAGAGTTTTCAACTCAAATTCAGTCCAAATTATGTATTTGCAATAGCTAATGGACAGTACCAATCTTAATTTTAGGCAGATATATCTCTTGGAGATGTTTTTTATGTGCTGACGAAAACTATTTATTACTCGCATTTTCAGATTACAGGAGATGGGTGCTCTAGAAGTAGATAAAGTGGTTCATGAACACGAAGGTTGGCGCCTTGTCTCTTGTATATGGTTGCATGGTGGGGCTATCCATGTACTTGCCAACATGTTGAGTCTTCTTTTTATTGGAATTCGGCTTGAACAAGAATTTGGATTTGGTATGGTTCTGGTAATTATCCTTGCATTGTTCAAGTATATCGTTATATTTCTTCCGACCAACAGTATTCCATTATCTGTATTTATATCATTGTTTTTACATAAATGTTCTGGAAGAAAAGAAACTCAGCTGAGTTTATTTAGCAATGAAATCAATAAAAAAGCTTTGTTGTCGATTGTAATTTCTACCTTTCTTGTCCTTTCGCAGTTAGAATTGGATTTCTCTATGTGATATCTGGTTTTGGAGGGAGTTTGCTGTCTGCGTTATTCATACAAACGGGCATCTCAGTTGGTGCATCTGGTGCATTGTTTGGCTTACTCGGAGGGATGCTCTCAGAGCTCTTCATTAATTGGACGATATATGCCAATAAGGTGAATGAACTAAAAAAATTGTTCAATTCAACAGTGCTTCCTGATAAATAATTTATTGTCTTTGCGGTCTGCGCCTAAACCATTCTATTTCTTTCCATTTTGTCTCATGATGTTTTGCAGATGGCTGCATTGTTGACTCTTATAGTCATTGTTGTAATAAATTTAGCTGTTGGAGTCCTTCCACATGTTGACAATTTCGCTCATCTAGGAGGATTTGGTTCTGGCTTTCTGCTTGGATTTGTCCTTTTGATTCGTCCTCAGTTTAAATGGATAAGCCAACAACAGTCTAAATCTGGATCTCATGCATTTTCTGTTAAACACAATAAGTACTTACCTTATCAATATGTGTTGTGGGTTTTGTCTTTCCTATTACTCATTGCAGGGTAAGTTTGTTTTAGTTTTCTTTTCTCTTTTGTATATTACCTTTAATATTCTTAGGACTTGGATACTCTTTTCACAAATATTTTGTTTGTAGAGATTGAATTTATGTTATTGCTTGTAAAGTAGTATTTAATCTAAAGTTGGATAATTTTGACAGATTCATTACTGGGATGGTTCTACTCTTTCGAGGTGTTAACTTGAATGAACGTTGCTCGTGGTGTCATTATTTAAGTTGTGTTCCTACCTCAAAATGGAGTTGTCAGGAACAAAGCATTTATTGTGAG
Protein sequence

>MS.gene052102.t1

MSGGRNPHGGTTVEVKVHPRRGSPSSSSSNPPVTRDRDFRLFKQWVPWLVPTFVFANVIIFIVTMYVNDCPENAFHGTCVAPFLGRFSFQPLKENPLFGPSSFTLQEMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELFINWTIYANKMAALLTLIVIVVINLAVGVLPHVDNFAHLGGFGSGFLLGFVLLIRPQFKWISQQQSKSGSHAFSVKHNKYLPYQYVLWVLSFLLLIAGFITGMVLLFRGVNLNERCSWCHYLSCVPTSKWSCQEQSIYCE