Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45813.t1 | XP_013447002.1 | 89.2 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 4.50E-85 | 323.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45813.t1 | P31110 | 61.8 | 165 | 57 | 3 | 13 | 176 | 18 | 177 | 1.3e-53 | 210.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45813.t1 | A0A072TU31 | 89.2 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 3.2e-85 | 323.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059188 | MS.gene45813 | 0.894613 | 2.09E-75 | -1.69E-46 |
MS.gene059189 | MS.gene45813 | 0.893633 | 5.24E-75 | -1.69E-46 |
MS.gene059191 | MS.gene45813 | 0.902376 | 1.03E-78 | -1.69E-46 |
MS.gene059192 | MS.gene45813 | 0.899975 | 1.16E-77 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45813.t1 | MTR_8g096920 | 89.205 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 4.40e-112 | 316 |
MS.gene45813.t1 | MTR_8g096910 | 81.250 | 176 | 33 | 0 | 1 | 176 | 1 | 176 | 1.01e-107 | 305 |
MS.gene45813.t1 | MTR_8g096900 | 47.748 | 222 | 68 | 4 | 2 | 176 | 28 | 248 | 3.43e-62 | 192 |
MS.gene45813.t1 | MTR_5g010635 | 44.660 | 206 | 65 | 3 | 19 | 176 | 21 | 225 | 1.36e-49 | 160 |
MS.gene45813.t1 | MTR_5g010640 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 1.00e-46 | 152 |
MS.gene45813.t1 | MTR_2g067990 | 41.206 | 199 | 72 | 7 | 21 | 176 | 26 | 222 | 3.54e-34 | 127 |
MS.gene45813.t1 | MTR_5g059200 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 1.72e-28 | 107 |
MS.gene45813.t1 | MTR_4g073720 | 41.420 | 169 | 75 | 9 | 1 | 150 | 1 | 164 | 8.68e-28 | 106 |
MS.gene45813.t1 | MTR_6g079580 | 37.857 | 140 | 76 | 4 | 1 | 132 | 1 | 137 | 2.10e-27 | 103 |
MS.gene45813.t1 | MTR_1g021945 | 48.000 | 125 | 55 | 3 | 19 | 134 | 23 | 146 | 2.10e-27 | 103 |
MS.gene45813.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 3.01e-27 | 103 |
MS.gene45813.t1 | MTR_5g022350 | 33.333 | 234 | 92 | 11 | 3 | 176 | 14 | 243 | 1.21e-26 | 103 |
MS.gene45813.t1 | MTR_7g062610 | 38.994 | 159 | 82 | 6 | 1 | 149 | 1 | 154 | 2.02e-26 | 100 |
MS.gene45813.t1 | MTR_5g022350 | 44.928 | 138 | 65 | 8 | 6 | 137 | 82 | 214 | 2.40e-26 | 100 |
MS.gene45813.t1 | MTR_4g073730 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 7.20e-26 | 100 |
MS.gene45813.t1 | MTR_4g073730 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 9.48e-26 | 100 |
MS.gene45813.t1 | MTR_2g067980 | 35.683 | 227 | 73 | 10 | 21 | 176 | 23 | 247 | 1.24e-25 | 102 |
MS.gene45813.t1 | MTR_8g075510 | 40.741 | 162 | 75 | 8 | 1 | 143 | 4 | 163 | 2.59e-25 | 98.2 |
MS.gene45813.t1 | MTR_3g111620 | 40.816 | 147 | 68 | 5 | 19 | 150 | 24 | 166 | 4.25e-25 | 97.8 |
MS.gene45813.t1 | MTR_8g037890 | 40.714 | 140 | 72 | 5 | 2 | 132 | 7 | 144 | 4.56e-25 | 99.0 |
MS.gene45813.t1 | MTR_8g075510 | 41.497 | 147 | 68 | 8 | 17 | 150 | 26 | 167 | 4.65e-25 | 98.6 |
MS.gene45813.t1 | MTR_8g036215 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 9.94e-25 | 96.3 |
MS.gene45813.t1 | MTR_8g075550 | 39.766 | 171 | 79 | 7 | 21 | 175 | 27 | 189 | 1.07e-24 | 97.8 |
MS.gene45813.t1 | MTR_1g025420 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 1.27e-24 | 96.7 |
MS.gene45813.t1 | MTR_1g025420 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 5.41e-24 | 96.3 |
MS.gene45813.t1 | MTR_8g056820 | 39.855 | 138 | 72 | 5 | 4 | 131 | 7 | 143 | 2.72e-23 | 93.2 |
MS.gene45813.t1 | MTR_2g069660 | 31.148 | 244 | 99 | 8 | 1 | 176 | 1 | 243 | 4.72e-23 | 92.0 |
MS.gene45813.t1 | MTR_5g022310 | 36.478 | 159 | 81 | 6 | 3 | 143 | 8 | 164 | 1.05e-22 | 91.7 |
MS.gene45813.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 23 | 149 | 29 | 160 | 1.07e-22 | 91.3 |
MS.gene45813.t1 | MTR_5g022310 | 36.145 | 166 | 83 | 7 | 3 | 150 | 8 | 168 | 1.71e-22 | 91.7 |
MS.gene45813.t1 | MTR_3g114030 | 42.735 | 117 | 57 | 4 | 24 | 131 | 9 | 124 | 2.55e-22 | 90.1 |
MS.gene45813.t1 | MTR_2g068030 | 42.623 | 122 | 58 | 5 | 21 | 131 | 22 | 142 | 1.04e-21 | 89.0 |
MS.gene45813.t1 | MTR_1g062350 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 7.23e-21 | 86.3 |
MS.gene45813.t1 | MTR_2g068655 | 37.126 | 167 | 83 | 7 | 19 | 167 | 28 | 190 | 7.95e-21 | 87.4 |
MS.gene45813.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 1.07e-20 | 86.3 |
MS.gene45813.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 1.82e-20 | 85.5 |
MS.gene45813.t1 | MTR_1g062630 | 35.065 | 154 | 88 | 7 | 1 | 144 | 1 | 152 | 1.95e-20 | 85.5 |
MS.gene45813.t1 | MTR_7g102380 | 37.956 | 137 | 68 | 7 | 10 | 131 | 3 | 137 | 2.16e-20 | 85.1 |
MS.gene45813.t1 | MTR_1g062370 | 32.432 | 185 | 92 | 7 | 1 | 176 | 1 | 161 | 2.36e-20 | 85.1 |
MS.gene45813.t1 | MTR_1g062340 | 35.714 | 140 | 79 | 5 | 1 | 131 | 1 | 138 | 1.99e-19 | 82.4 |
MS.gene45813.t1 | MTR_1g062590 | 33.333 | 159 | 91 | 6 | 1 | 150 | 1 | 153 | 2.60e-19 | 82.0 |
MS.gene45813.t1 | MTR_5g023850 | 32.039 | 206 | 101 | 9 | 8 | 176 | 13 | 216 | 7.19e-19 | 80.5 |
MS.gene45813.t1 | MTR_1g062660 | 31.351 | 185 | 94 | 7 | 1 | 176 | 1 | 161 | 1.65e-18 | 80.1 |
MS.gene45813.t1 | MTR_1g062690 | 29.348 | 184 | 75 | 7 | 1 | 176 | 1 | 137 | 1.02e-13 | 67.0 |
MS.gene45813.t1 | MTR_5g068670 | 48.438 | 64 | 31 | 2 | 67 | 129 | 25 | 87 | 6.35e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45813.t1 | AT4G11650 | 45.089 | 224 | 74 | 4 | 1 | 176 | 1 | 223 | 8.61e-56 | 176 |
MS.gene45813.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.10e-33 | 122 |
MS.gene45813.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 1.65e-33 | 122 |
MS.gene45813.t1 | AT1G77700 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 1.72e-33 | 120 |
MS.gene45813.t1 | AT1G75050 | 45.588 | 136 | 67 | 2 | 2 | 131 | 5 | 139 | 3.89e-30 | 110 |
MS.gene45813.t1 | AT1G75030 | 43.478 | 138 | 69 | 4 | 1 | 131 | 4 | 139 | 2.00e-27 | 103 |
MS.gene45813.t1 | AT4G36010 | 51.695 | 118 | 46 | 5 | 24 | 131 | 25 | 141 | 5.04e-27 | 103 |
MS.gene45813.t1 | AT4G36010 | 51.695 | 118 | 46 | 5 | 24 | 131 | 25 | 141 | 5.04e-27 | 103 |
MS.gene45813.t1 | AT1G73620 | 44.628 | 121 | 56 | 4 | 19 | 131 | 39 | 156 | 7.92e-27 | 102 |
MS.gene45813.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 1.06e-26 | 101 |
MS.gene45813.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 2.56e-26 | 100 |
MS.gene45813.t1 | AT1G75040 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 3.88e-26 | 100 |
MS.gene45813.t1 | AT1G75800 | 38.994 | 159 | 83 | 6 | 1 | 149 | 1 | 155 | 1.37e-25 | 100 |
MS.gene45813.t1 | AT4G38660 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 1.55e-25 | 100 |
MS.gene45813.t1 | AT4G38660 | 43.056 | 144 | 64 | 7 | 16 | 143 | 2 | 143 | 3.91e-25 | 99.4 |
MS.gene45813.t1 | AT2G17860 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 4.61e-25 | 97.8 |
MS.gene45813.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 2.20e-24 | 98.6 |
MS.gene45813.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 2.65e-24 | 98.6 |
MS.gene45813.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 2.84e-24 | 98.6 |
MS.gene45813.t1 | AT4G38670 | 42.254 | 142 | 69 | 6 | 1 | 131 | 2 | 141 | 2.93e-24 | 96.3 |
MS.gene45813.t1 | AT4G38670 | 42.254 | 142 | 69 | 6 | 1 | 131 | 2 | 141 | 2.93e-24 | 96.3 |
MS.gene45813.t1 | AT5G40020 | 33.333 | 180 | 94 | 8 | 1 | 158 | 1 | 176 | 3.02e-23 | 92.8 |
MS.gene45813.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 5.98e-23 | 92.0 |
MS.gene45813.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 8.34e-23 | 92.0 |
MS.gene45813.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 8.37e-23 | 92.4 |
MS.gene45813.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 9.69e-23 | 94.7 |
MS.gene45813.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 1.05e-22 | 94.4 |
MS.gene45813.t1 | AT4G38670 | 44.094 | 127 | 58 | 6 | 16 | 131 | 1 | 125 | 1.09e-22 | 91.7 |
MS.gene45813.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 1.45e-22 | 92.4 |
MS.gene45813.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 2.16e-22 | 91.7 |
MS.gene45813.t1 | AT1G19320 | 39.007 | 141 | 72 | 6 | 3 | 132 | 9 | 146 | 2.40e-22 | 90.5 |
MS.gene45813.t1 | AT1G20030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 5 | 118 | 5.71e-22 | 90.5 |
MS.gene45813.t1 | AT1G20030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 22 | 135 | 7.32e-22 | 90.5 |
MS.gene45813.t1 | AT2G28790 | 34.706 | 170 | 89 | 9 | 1 | 150 | 26 | 193 | 3.02e-20 | 85.5 |
MS.gene45813.t1 | AT2G28790 | 34.969 | 163 | 87 | 8 | 1 | 146 | 1 | 161 | 3.92e-20 | 84.7 |
MS.gene45813.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 4.28e-20 | 84.7 |
MS.gene45813.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 5.76e-20 | 85.1 |
MS.gene45813.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 8.72e-20 | 84.7 |
MS.gene45813.t1 | AT1G70250 | 34.074 | 135 | 79 | 5 | 24 | 150 | 147 | 279 | 1.51e-16 | 76.6 |
MS.gene45813.t1 | AT4G18250 | 27.570 | 214 | 90 | 10 | 26 | 176 | 61 | 272 | 3.97e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.4:+76534471 | MS.gene45813:CDS |
ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.4:+76534613 | MS.gene45813:CDS |
AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.4:+76534472 | MS.gene45813:CDS |
TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.4:-76534693 | None:intergenic |
CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.4:+76534680 | MS.gene45813:CDS |
AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.4:-76534579 | None:intergenic |
ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.4:+76534641 | MS.gene45813:CDS |
CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.4:-76534398 | None:intergenic |
CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4.4:-76534411 | None:intergenic |
TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.4:-76534603 | None:intergenic |
GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4.4:+76534503 | MS.gene45813:CDS |
GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.4:+76534524 | MS.gene45813:CDS |
CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.4:+76534599 | MS.gene45813:CDS |
GCCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.4:+76534560 | MS.gene45813:CDS |
TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.4:-76534740 | None:intergenic |
GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.4:+76534482 | MS.gene45813:CDS |
ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.4:-76534795 | None:intergenic |
ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.4:+76534461 | MS.gene45813:CDS |
GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.4:-76534674 | None:intergenic |
GCCACACGGTGTAGCTGCAT+TGG | 0.471931 | 4.4:-76534376 | None:intergenic |
CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4.4:-76534405 | None:intergenic |
TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.4:+76534339 | MS.gene45813:CDS |
AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4.4:-76534410 | None:intergenic |
CCAGAGTCCATGTTTGACCT+TGG | 0.495410 | 4.4:-76534436 | None:intergenic |
CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4.4:-76534496 | None:intergenic |
CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.4:-76534464 | None:intergenic |
ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.4:-76534785 | None:intergenic |
CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4.4:+76534497 | MS.gene45813:CDS |
TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.4:+76534331 | MS.gene45813:CDS |
GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4.4:+76534401 | MS.gene45813:CDS |
GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.4:+76534705 | MS.gene45813:CDS |
ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4.4:+76534509 | MS.gene45813:CDS |
GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.4:-76534390 | None:intergenic |
TGGACTCTGGACATCCCAGC+TGG | 0.517689 | 4.4:+76534449 | MS.gene45813:CDS |
TACCGGATAAGCTGCAACTG+AGG | 0.525880 | 4.4:-76534562 | None:intergenic |
CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4.4:+76534412 | MS.gene45813:CDS |
CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.4:+76534398 | MS.gene45813:CDS |
CCAAGGTCAAACATGGACTC+TGG | 0.568915 | 4.4:+76534436 | MS.gene45813:CDS |
CAGCTACACCGTGTGGCCAG+CGG | 0.571310 | 4.4:+76534382 | MS.gene45813:CDS |
CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4.4:+76534405 | MS.gene45813:CDS |
ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4.4:-76534510 | None:intergenic |
TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.4:+76534395 | MS.gene45813:CDS |
ACCGGATAAGCTGCAACTGA+GGG | 0.603028 | 4.4:-76534561 | None:intergenic |
GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.4:+76534767 | MS.gene45813:CDS |
AGTTGGACCAAGGTCAAACA+TGG | 0.621156 | 4.4:+76534429 | MS.gene45813:CDS |
ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.4:+76534473 | MS.gene45813:CDS |
GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4.4:+76534419 | MS.gene45813:CDS |
GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.4:-76534463 | None:intergenic |
GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.4:-76534590 | None:intergenic |
TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.4:-76534739 | None:intergenic |
ACCAATGCAGCTACACCGTG+TGG | 0.655666 | 4.4:+76534375 | MS.gene45813:CDS |
TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.4:+76534704 | MS.gene45813:CDS |
CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.4:-76534784 | None:intergenic |
AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.4:+76534533 | MS.gene45813:CDS |
ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.4:+76534602 | MS.gene45813:CDS |
TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.4:+76534536 | MS.gene45813:CDS |
CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.4:+76534706 | MS.gene45813:CDS |
AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.4:+76534770 | MS.gene45813:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.4:76534641-76534660 | MS.gene45813:CDS | 25.0% |
!!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.4:76534761-76534780 | None:intergenic | 25.0% |
!!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.4:76534762-76534781 | None:intergenic | 25.0% |
ACAAAAGACAACTTTGTAGT+TGG | - | chr4.4:76534798-76534817 | None:intergenic | 30.0% | |
! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.4:76534704-76534723 | MS.gene45813:CDS | 30.0% |
AACTTCATCAGGTCGAATTT+GGG | + | chr4.4:76534472-76534491 | MS.gene45813:CDS | 35.0% | |
AATTGTCAAACTGGTGATTG+CGG | + | chr4.4:76534533-76534552 | MS.gene45813:CDS | 35.0% | |
ACTTAACGGTGGAAACAATT+TGG | + | chr4.4:76534613-76534632 | MS.gene45813:CDS | 35.0% | |
CAACTTAGTTCAACCTCTAA+TGG | + | chr4.4:76534680-76534699 | MS.gene45813:CDS | 35.0% | |
CTTACCGAATTCACACTTAA+CGG | + | chr4.4:76534599-76534618 | MS.gene45813:CDS | 35.0% | |
TACTTTGTTGCATCCATTAG+AGG | - | chr4.4:76534696-76534715 | None:intergenic | 35.0% | |
! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.4:76534706-76534725 | MS.gene45813:CDS | 35.0% |
! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.4:76534705-76534724 | MS.gene45813:CDS | 35.0% |
ACTTCATCAGGTCGAATTTG+GGG | + | chr4.4:76534473-76534492 | MS.gene45813:CDS | 40.0% | |
GAACTTCATCAGGTCGAATT+TGG | + | chr4.4:76534471-76534490 | MS.gene45813:CDS | 40.0% | |
GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.4:76534677-76534696 | None:intergenic | 40.0% | |
GGCAATGGTAATTGTCAAAC+TGG | + | chr4.4:76534524-76534543 | MS.gene45813:CDS | 40.0% | |
GTTAAAACGAATACATGCCC+AGG | + | chr4.4:76534767-76534786 | MS.gene45813:CDS | 40.0% | |
TCCACCGTTAAGTGTGAATT+CGG | - | chr4.4:76534606-76534625 | None:intergenic | 40.0% | |
!! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.4:76534742-76534761 | None:intergenic | 40.0% |
!! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.4:76534743-76534762 | None:intergenic | 40.0% |
AAAACGAATACATGCCCAGG+TGG | + | chr4.4:76534770-76534789 | MS.gene45813:CDS | 45.0% | |
ACCGAATTCACACTTAACGG+TGG | + | chr4.4:76534602-76534621 | MS.gene45813:CDS | 45.0% | |
AGTTGGACCAAGGTCAAACA+TGG | + | chr4.4:76534429-76534448 | MS.gene45813:CDS | 45.0% | |
GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.4:76534593-76534612 | None:intergenic | 45.0% | |
TCTCTGCTTGATATCTGCTC+AGG | + | chr4.4:76534331-76534350 | MS.gene45813:CDS | 45.0% | |
! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.4:76534788-76534807 | None:intergenic | 45.0% |
! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.4:76534787-76534806 | None:intergenic | 45.0% |
ACCGGATAAGCTGCAACTGA+GGG | - | chr4.4:76534564-76534583 | None:intergenic | 50.0% | |
ATCCCAGCTGGAACTTCATC+AGG | + | chr4.4:76534461-76534480 | MS.gene45813:CDS | 50.0% | |
CCAAGGTCAAACATGGACTC+TGG | + | chr4.4:76534436-76534455 | MS.gene45813:CDS | 50.0% | |
CCAGAGTCCATGTTTGACCT+TGG | - | chr4.4:76534439-76534458 | None:intergenic | 50.0% | |
GACCTGATGAAGTTCCAGCT+GGG | - | chr4.4:76534466-76534485 | None:intergenic | 50.0% | |
TACCGGATAAGCTGCAACTG+AGG | - | chr4.4:76534565-76534584 | None:intergenic | 50.0% | |
TGATATCTGCTCAGGCAGCT+AGG | + | chr4.4:76534339-76534358 | MS.gene45813:CDS | 50.0% | |
TGTCAAACTGGTGATTGCGG+TGG | + | chr4.4:76534536-76534555 | MS.gene45813:CDS | 50.0% | |
! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.4:76534582-76534601 | None:intergenic | 50.0% |
ACCAATGCAGCTACACCGTG+TGG | + | chr4.4:76534375-76534394 | MS.gene45813:CDS | 55.0% | |
ACCATTGCCTGAACCGTCGA+AGG | - | chr4.4:76534513-76534532 | None:intergenic | 55.0% | |
ACCTTCGACGGTTCAGGCAA+TGG | + | chr4.4:76534509-76534528 | MS.gene45813:CDS | 55.0% | |
CGAACTGGTTGCACCTTCGA+CGG | + | chr4.4:76534497-76534516 | MS.gene45813:CDS | 55.0% | |
CGACCTGATGAAGTTCCAGC+TGG | - | chr4.4:76534467-76534486 | None:intergenic | 55.0% | |
GCCCTCAGTTGCAGCTTATC+CGG | + | chr4.4:76534560-76534579 | MS.gene45813:CDS | 55.0% | |
! | CGTCGAAGGTGCAACCAGTT+CGG | - | chr4.4:76534499-76534518 | None:intergenic | 55.0% |
AACTGCCGACCTCCACCACT+GGG | - | chr4.4:76534413-76534432 | None:intergenic | 60.0% | |
GCCACACGGTGTAGCTGCAT+TGG | - | chr4.4:76534379-76534398 | None:intergenic | 60.0% | |
GGTTGCACCTTCGACGGTTC+AGG | + | chr4.4:76534503-76534522 | MS.gene45813:CDS | 60.0% | |
TGGACTCTGGACATCCCAGC+TGG | + | chr4.4:76534449-76534468 | MS.gene45813:CDS | 60.0% | |
! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.4:76534482-76534501 | MS.gene45813:CDS | 60.0% |
CAACTGCCGACCTCCACCAC+TGG | - | chr4.4:76534414-76534433 | None:intergenic | 65.0% | |
CAGCTACACCGTGTGGCCAG+CGG | + | chr4.4:76534382-76534401 | MS.gene45813:CDS | 65.0% | |
GGAGGTCGGCAGTTGGACCA+AGG | + | chr4.4:76534419-76534438 | MS.gene45813:CDS | 65.0% | |
! | CAGTGGTGGAGGTCGGCAGT+TGG | + | chr4.4:76534412-76534431 | MS.gene45813:CDS | 65.0% |
! | CCACACCCAGTGGTGGAGGT+CGG | + | chr4.4:76534405-76534424 | MS.gene45813:CDS | 65.0% |
CCGACCTCCACCACTGGGTG+TGG | - | chr4.4:76534408-76534427 | None:intergenic | 70.0% | |
CCACCACTGGGTGTGGCCGC+TGG | - | chr4.4:76534401-76534420 | None:intergenic | 75.0% | |
CCAGCGGCCACACCCAGTGG+TGG | + | chr4.4:76534398-76534417 | MS.gene45813:CDS | 75.0% | |
GCGGCCACACCCAGTGGTGG+AGG | + | chr4.4:76534401-76534420 | MS.gene45813:CDS | 75.0% | |
GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.4:76534393-76534412 | None:intergenic | 75.0% | |
TGGCCAGCGGCCACACCCAG+TGG | + | chr4.4:76534395-76534414 | MS.gene45813:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 76534293 | 76534823 | 76534293 | ID=MS.gene45813 |
chr4.4 | mRNA | 76534293 | 76534823 | 76534293 | ID=MS.gene45813.t1;Parent=MS.gene45813 |
chr4.4 | exon | 76534293 | 76534823 | 76534293 | ID=MS.gene45813.t1.exon1;Parent=MS.gene45813.t1 |
chr4.4 | CDS | 76534293 | 76534823 | 76534293 | ID=cds.MS.gene45813.t1;Parent=MS.gene45813.t1 |
Gene Sequence |
Protein sequence |