Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059192.t1 | XP_013447002.1 | 88.6 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 1.00E-84 | 322.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059192.t1 | P31110 | 60.0 | 165 | 60 | 3 | 13 | 176 | 18 | 177 | 2.5e-52 | 206.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059192.t1 | A0A072TU31 | 88.6 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 7.2e-85 | 322.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059188 | MS.gene059192 | 0.974724 | 1.16E-138 | -1.69E-46 |
MS.gene059189 | MS.gene059192 | 0.975595 | 3.06E-140 | -1.69E-46 |
MS.gene059191 | MS.gene059192 | 0.983919 | 4.47E-159 | -1.69E-46 |
MS.gene059192 | MS.gene45813 | 0.899975 | 1.16E-77 | -1.69E-46 |
MS.gene059192 | MS.gene45815 | 0.954149 | 5.66E-112 | -1.69E-46 |
MS.gene059192 | MS.gene45816 | 0.895152 | 1.26E-75 | -1.69E-46 |
MS.gene059192 | MS.gene45818 | 0.896682 | 2.92E-76 | -1.69E-46 |
MS.gene059192 | MS.gene45820 | 0.955032 | 7.69E-113 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059192.t1 | MTR_8g096920 | 88.636 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 2.52e-111 | 314 |
MS.gene059192.t1 | MTR_8g096910 | 80.682 | 176 | 34 | 0 | 1 | 176 | 1 | 176 | 5.71e-107 | 303 |
MS.gene059192.t1 | MTR_8g096900 | 47.297 | 222 | 69 | 4 | 2 | 176 | 28 | 248 | 4.29e-61 | 190 |
MS.gene059192.t1 | MTR_5g010635 | 44.660 | 206 | 65 | 3 | 19 | 176 | 21 | 225 | 1.07e-48 | 158 |
MS.gene059192.t1 | MTR_5g010640 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 1.80e-46 | 152 |
MS.gene059192.t1 | MTR_2g067990 | 40.704 | 199 | 73 | 7 | 21 | 176 | 26 | 222 | 2.77e-33 | 124 |
MS.gene059192.t1 | MTR_5g059200 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 2.98e-28 | 106 |
MS.gene059192.t1 | MTR_4g073720 | 40.828 | 169 | 76 | 9 | 1 | 150 | 1 | 164 | 2.45e-27 | 105 |
MS.gene059192.t1 | MTR_6g079580 | 37.143 | 140 | 77 | 4 | 1 | 132 | 1 | 137 | 3.46e-27 | 102 |
MS.gene059192.t1 | MTR_7g062610 | 39.623 | 159 | 81 | 6 | 1 | 149 | 1 | 154 | 8.54e-27 | 102 |
MS.gene059192.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 1.39e-26 | 101 |
MS.gene059192.t1 | MTR_1g021945 | 47.200 | 125 | 56 | 3 | 19 | 134 | 23 | 146 | 3.93e-26 | 100 |
MS.gene059192.t1 | MTR_5g022350 | 32.906 | 234 | 93 | 11 | 3 | 176 | 14 | 243 | 1.16e-25 | 100 |
MS.gene059192.t1 | MTR_8g037890 | 42.857 | 140 | 69 | 6 | 2 | 132 | 7 | 144 | 3.45e-25 | 99.4 |
MS.gene059192.t1 | MTR_5g022350 | 44.203 | 138 | 66 | 8 | 6 | 137 | 82 | 214 | 3.48e-25 | 97.1 |
MS.gene059192.t1 | MTR_4g073730 | 41.333 | 150 | 74 | 7 | 3 | 139 | 5 | 153 | 8.02e-25 | 97.8 |
MS.gene059192.t1 | MTR_2g067980 | 35.242 | 227 | 74 | 10 | 21 | 176 | 23 | 247 | 9.16e-25 | 100 |
MS.gene059192.t1 | MTR_4g073730 | 41.333 | 150 | 74 | 7 | 3 | 139 | 5 | 153 | 1.13e-24 | 97.8 |
MS.gene059192.t1 | MTR_3g111620 | 39.597 | 149 | 67 | 5 | 19 | 150 | 24 | 166 | 1.99e-24 | 95.9 |
MS.gene059192.t1 | MTR_8g075510 | 40.123 | 162 | 76 | 8 | 1 | 143 | 4 | 163 | 1.99e-24 | 95.9 |
MS.gene059192.t1 | MTR_8g075550 | 39.766 | 171 | 79 | 7 | 21 | 175 | 27 | 189 | 2.68e-24 | 96.7 |
MS.gene059192.t1 | MTR_5g022310 | 37.736 | 159 | 79 | 6 | 3 | 143 | 8 | 164 | 3.40e-24 | 95.5 |
MS.gene059192.t1 | MTR_8g075510 | 40.816 | 147 | 69 | 8 | 17 | 150 | 26 | 167 | 4.18e-24 | 96.3 |
MS.gene059192.t1 | MTR_8g036215 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 6.14e-24 | 94.4 |
MS.gene059192.t1 | MTR_5g022310 | 37.349 | 166 | 81 | 7 | 3 | 150 | 8 | 168 | 7.21e-24 | 95.5 |
MS.gene059192.t1 | MTR_1g025420 | 38.608 | 158 | 79 | 5 | 3 | 143 | 4 | 160 | 1.47e-23 | 94.0 |
MS.gene059192.t1 | MTR_1g025420 | 38.608 | 158 | 79 | 5 | 3 | 143 | 4 | 160 | 5.42e-23 | 93.6 |
MS.gene059192.t1 | MTR_2g069660 | 30.738 | 244 | 100 | 8 | 1 | 176 | 1 | 243 | 3.76e-22 | 89.7 |
MS.gene059192.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 23 | 149 | 29 | 160 | 4.42e-22 | 89.7 |
MS.gene059192.t1 | MTR_8g056820 | 39.130 | 138 | 73 | 5 | 4 | 131 | 7 | 143 | 4.73e-22 | 89.7 |
MS.gene059192.t1 | MTR_3g114030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 9 | 122 | 5.34e-22 | 89.4 |
MS.gene059192.t1 | MTR_1g062630 | 36.170 | 141 | 79 | 6 | 1 | 132 | 1 | 139 | 4.72e-21 | 87.0 |
MS.gene059192.t1 | MTR_2g068030 | 41.803 | 122 | 59 | 5 | 21 | 131 | 22 | 142 | 8.32e-21 | 86.3 |
MS.gene059192.t1 | MTR_1g062350 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 2.24e-20 | 85.1 |
MS.gene059192.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 2.39e-20 | 85.5 |
MS.gene059192.t1 | MTR_1g062590 | 33.962 | 159 | 90 | 6 | 1 | 150 | 1 | 153 | 4.64e-20 | 84.3 |
MS.gene059192.t1 | MTR_7g102380 | 37.956 | 137 | 68 | 7 | 10 | 131 | 3 | 137 | 4.68e-20 | 84.3 |
MS.gene059192.t1 | MTR_2g068655 | 36.527 | 167 | 84 | 7 | 19 | 167 | 28 | 190 | 5.82e-20 | 85.1 |
MS.gene059192.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 6.03e-20 | 84.0 |
MS.gene059192.t1 | MTR_1g062370 | 32.432 | 185 | 92 | 7 | 1 | 176 | 1 | 161 | 7.85e-20 | 83.6 |
MS.gene059192.t1 | MTR_1g062340 | 36.429 | 140 | 78 | 5 | 1 | 131 | 1 | 138 | 1.01e-19 | 83.2 |
MS.gene059192.t1 | MTR_1g062660 | 31.351 | 185 | 94 | 7 | 1 | 176 | 1 | 161 | 4.70e-18 | 79.0 |
MS.gene059192.t1 | MTR_5g023850 | 31.553 | 206 | 102 | 9 | 8 | 176 | 13 | 216 | 5.82e-18 | 78.2 |
MS.gene059192.t1 | MTR_1g062690 | 29.348 | 184 | 75 | 7 | 1 | 176 | 1 | 137 | 2.82e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059192.t1 | AT4G11650 | 44.643 | 224 | 75 | 4 | 1 | 176 | 1 | 223 | 1.03e-54 | 173 |
MS.gene059192.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.36e-33 | 121 |
MS.gene059192.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 2.21e-33 | 121 |
MS.gene059192.t1 | AT1G77700 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 2.22e-33 | 120 |
MS.gene059192.t1 | AT1G75050 | 46.324 | 136 | 66 | 2 | 2 | 131 | 5 | 139 | 2.05e-30 | 111 |
MS.gene059192.t1 | AT1G75030 | 44.203 | 138 | 68 | 4 | 1 | 131 | 4 | 139 | 8.63e-28 | 104 |
MS.gene059192.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 2.70e-26 | 102 |
MS.gene059192.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 2.70e-26 | 102 |
MS.gene059192.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 4.54e-26 | 100 |
MS.gene059192.t1 | AT4G38660 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 7.91e-26 | 101 |
MS.gene059192.t1 | AT1G75040 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 9.07e-26 | 99.4 |
MS.gene059192.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 1.13e-25 | 99.0 |
MS.gene059192.t1 | AT4G38660 | 43.056 | 144 | 64 | 6 | 16 | 143 | 2 | 143 | 1.95e-25 | 100 |
MS.gene059192.t1 | AT1G73620 | 43.802 | 121 | 57 | 4 | 19 | 131 | 39 | 156 | 2.40e-25 | 98.6 |
MS.gene059192.t1 | AT1G75800 | 38.365 | 159 | 84 | 6 | 1 | 149 | 1 | 155 | 1.11e-24 | 98.2 |
MS.gene059192.t1 | AT2G17860 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 1.60e-24 | 96.3 |
MS.gene059192.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 5.24e-24 | 97.4 |
MS.gene059192.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 7.79e-24 | 97.4 |
MS.gene059192.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 7.92e-24 | 97.4 |
MS.gene059192.t1 | AT4G38670 | 41.549 | 142 | 70 | 6 | 1 | 131 | 2 | 141 | 3.25e-23 | 93.2 |
MS.gene059192.t1 | AT4G38670 | 41.549 | 142 | 70 | 6 | 1 | 131 | 2 | 141 | 3.25e-23 | 93.2 |
MS.gene059192.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 1.76e-22 | 94.0 |
MS.gene059192.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 1.84e-22 | 94.0 |
MS.gene059192.t1 | AT1G19320 | 39.007 | 141 | 72 | 6 | 3 | 132 | 9 | 146 | 1.99e-22 | 90.5 |
MS.gene059192.t1 | AT5G40020 | 32.778 | 180 | 95 | 8 | 1 | 158 | 1 | 176 | 2.13e-22 | 90.9 |
MS.gene059192.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 3.98e-22 | 89.7 |
MS.gene059192.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 4.99e-22 | 90.5 |
MS.gene059192.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 5.67e-22 | 89.7 |
MS.gene059192.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 9.79e-22 | 90.1 |
MS.gene059192.t1 | AT4G38670 | 43.307 | 127 | 59 | 6 | 16 | 131 | 1 | 125 | 1.18e-21 | 89.0 |
MS.gene059192.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 1.22e-21 | 89.7 |
MS.gene059192.t1 | AT1G20030 | 42.609 | 115 | 56 | 4 | 24 | 129 | 5 | 118 | 6.40e-21 | 87.4 |
MS.gene059192.t1 | AT1G20030 | 42.609 | 115 | 56 | 4 | 24 | 129 | 22 | 135 | 7.39e-21 | 87.8 |
MS.gene059192.t1 | AT2G28790 | 33.529 | 170 | 91 | 8 | 1 | 150 | 26 | 193 | 9.43e-20 | 84.0 |
MS.gene059192.t1 | AT2G28790 | 33.742 | 163 | 89 | 7 | 1 | 146 | 1 | 161 | 1.02e-19 | 83.6 |
MS.gene059192.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 2.39e-19 | 82.4 |
MS.gene059192.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 3.86e-19 | 83.2 |
MS.gene059192.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 5.95e-19 | 82.4 |
MS.gene059192.t1 | AT1G70250 | 33.333 | 135 | 80 | 5 | 24 | 150 | 147 | 279 | 1.46e-15 | 73.9 |
MS.gene059192.t1 | AT4G18250 | 28.037 | 214 | 89 | 10 | 26 | 176 | 61 | 272 | 1.50e-11 | 62.4 |
Find 59 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.1:+73616289 | MS.gene059192:CDS |
ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.1:+73616431 | MS.gene059192:CDS |
AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.1:+73616290 | MS.gene059192:CDS |
TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.1:-73616511 | None:intergenic |
CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.1:+73616498 | MS.gene059192:CDS |
AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.1:-73616397 | None:intergenic |
ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.1:+73616459 | MS.gene059192:CDS |
CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.1:-73616216 | None:intergenic |
GGTTGCACCTTCGATGGTTC+AGG | 0.369475 | 4.1:+73616321 | MS.gene059192:CDS |
CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4.1:-73616229 | None:intergenic |
TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.1:-73616421 | None:intergenic |
GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.1:+73616342 | MS.gene059192:CDS |
CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.1:+73616417 | MS.gene059192:CDS |
GTCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.1:+73616378 | MS.gene059192:CDS |
TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.1:-73616558 | None:intergenic |
GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.1:+73616300 | MS.gene059192:CDS |
ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.1:-73616613 | None:intergenic |
ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.1:+73616279 | MS.gene059192:CDS |
GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.1:-73616492 | None:intergenic |
GCCACACGGTGTAGCCGCAT+TGG | 0.474171 | 4.1:-73616194 | None:intergenic |
CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4.1:-73616223 | None:intergenic |
TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.1:+73616157 | MS.gene059192:CDS |
AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4.1:-73616228 | None:intergenic |
ACCTTCGATGGTTCAGGCAA+TGG | 0.493231 | 4.1:+73616327 | MS.gene059192:CDS |
CCAGAGCCCATGTTTGACCT+TGG | 0.495410 | 4.1:-73616254 | None:intergenic |
CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.1:-73616282 | None:intergenic |
CCAAGGTCAAACATGGGCTC+TGG | 0.504719 | 4.1:+73616254 | MS.gene059192:CDS |
CATCGAAGGTGCAACCAGTT+CGG | 0.507011 | 4.1:-73616314 | None:intergenic |
CGAACTGGTTGCACCTTCGA+TGG | 0.507150 | 4.1:+73616315 | MS.gene059192:CDS |
ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.1:-73616603 | None:intergenic |
TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.1:+73616149 | MS.gene059192:CDS |
GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4.1:+73616219 | MS.gene059192:CDS |
GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.1:+73616523 | MS.gene059192:CDS |
GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.1:-73616208 | None:intergenic |
TGGGCTCTGGACATCCCAGC+TGG | 0.518638 | 4.1:+73616267 | MS.gene059192:CDS |
AGTTGGACCAAGGTCAAACA+TGG | 0.527633 | 4.1:+73616247 | MS.gene059192:CDS |
CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4.1:+73616230 | MS.gene059192:CDS |
CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.1:+73616216 | MS.gene059192:CDS |
CGGCTACACCGTGTGGCCAG+CGG | 0.572344 | 4.1:+73616200 | MS.gene059192:CDS |
CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4.1:+73616223 | MS.gene059192:CDS |
TACCGGATAAGCTGCAACTG+AGG | 0.596730 | 4.1:-73616380 | None:intergenic |
ACCATTGCCTGAACCATCGA+AGG | 0.597990 | 4.1:-73616328 | None:intergenic |
TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.1:+73616213 | MS.gene059192:CDS |
GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.1:+73616585 | MS.gene059192:CDS |
ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.1:+73616291 | MS.gene059192:CDS |
ACCAATGCGGCTACACCGTG+TGG | 0.625115 | 4.1:+73616193 | MS.gene059192:CDS |
GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4.1:+73616237 | MS.gene059192:CDS |
GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.1:-73616281 | None:intergenic |
GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.1:-73616408 | None:intergenic |
TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.1:-73616557 | None:intergenic |
TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.1:+73616522 | MS.gene059192:CDS |
CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.1:-73616602 | None:intergenic |
AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.1:+73616351 | MS.gene059192:CDS |
ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.1:+73616420 | MS.gene059192:CDS |
GTTGGACCAAGGTCAAACAT+GGG | 0.703017 | 4.1:+73616248 | MS.gene059192:CDS |
TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.1:+73616354 | MS.gene059192:CDS |
CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.1:+73616524 | MS.gene059192:CDS |
AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.1:+73616588 | MS.gene059192:CDS |
TTTGACATTGTAAACCAATG+CGG | 0.728342 | 4.1:+73616180 | MS.gene059192:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.1:73616459-73616478 | MS.gene059192:CDS | 25.0% |
!!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.1:73616579-73616598 | None:intergenic | 25.0% |
!!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.1:73616580-73616599 | None:intergenic | 25.0% |
ACAAAAGACAACTTTGTAGT+TGG | - | chr4.1:73616616-73616635 | None:intergenic | 30.0% | |
TTTGACATTGTAAACCAATG+CGG | + | chr4.1:73616180-73616199 | MS.gene059192:CDS | 30.0% | |
! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.1:73616522-73616541 | MS.gene059192:CDS | 30.0% |
AACTTCATCAGGTCGAATTT+GGG | + | chr4.1:73616290-73616309 | MS.gene059192:CDS | 35.0% | |
AATTGTCAAACTGGTGATTG+CGG | + | chr4.1:73616351-73616370 | MS.gene059192:CDS | 35.0% | |
ACTTAACGGTGGAAACAATT+TGG | + | chr4.1:73616431-73616450 | MS.gene059192:CDS | 35.0% | |
CAACTTAGTTCAACCTCTAA+TGG | + | chr4.1:73616498-73616517 | MS.gene059192:CDS | 35.0% | |
CTTACCGAATTCACACTTAA+CGG | + | chr4.1:73616417-73616436 | MS.gene059192:CDS | 35.0% | |
TACTTTGTTGCATCCATTAG+AGG | - | chr4.1:73616514-73616533 | None:intergenic | 35.0% | |
! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.1:73616524-73616543 | MS.gene059192:CDS | 35.0% |
! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.1:73616523-73616542 | MS.gene059192:CDS | 35.0% |
ACTTCATCAGGTCGAATTTG+GGG | + | chr4.1:73616291-73616310 | MS.gene059192:CDS | 40.0% | |
GAACTTCATCAGGTCGAATT+TGG | + | chr4.1:73616289-73616308 | MS.gene059192:CDS | 40.0% | |
GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.1:73616495-73616514 | None:intergenic | 40.0% | |
GGCAATGGTAATTGTCAAAC+TGG | + | chr4.1:73616342-73616361 | MS.gene059192:CDS | 40.0% | |
GTTAAAACGAATACATGCCC+AGG | + | chr4.1:73616585-73616604 | MS.gene059192:CDS | 40.0% | |
TCCACCGTTAAGTGTGAATT+CGG | - | chr4.1:73616424-73616443 | None:intergenic | 40.0% | |
!! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.1:73616560-73616579 | None:intergenic | 40.0% |
!! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.1:73616561-73616580 | None:intergenic | 40.0% |
AAAACGAATACATGCCCAGG+TGG | + | chr4.1:73616588-73616607 | MS.gene059192:CDS | 45.0% | |
ACCGAATTCACACTTAACGG+TGG | + | chr4.1:73616420-73616439 | MS.gene059192:CDS | 45.0% | |
AGTTGGACCAAGGTCAAACA+TGG | + | chr4.1:73616247-73616266 | MS.gene059192:CDS | 45.0% | |
GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.1:73616411-73616430 | None:intergenic | 45.0% | |
GTTGGACCAAGGTCAAACAT+GGG | + | chr4.1:73616248-73616267 | MS.gene059192:CDS | 45.0% | |
TCTCTGCTTGATATCTGCTC+AGG | + | chr4.1:73616149-73616168 | MS.gene059192:CDS | 45.0% | |
! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.1:73616606-73616625 | None:intergenic | 45.0% |
! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.1:73616605-73616624 | None:intergenic | 45.0% |
ACCATTGCCTGAACCATCGA+AGG | - | chr4.1:73616331-73616350 | None:intergenic | 50.0% | |
ACCTTCGATGGTTCAGGCAA+TGG | + | chr4.1:73616327-73616346 | MS.gene059192:CDS | 50.0% | |
ATCCCAGCTGGAACTTCATC+AGG | + | chr4.1:73616279-73616298 | MS.gene059192:CDS | 50.0% | |
GACCTGATGAAGTTCCAGCT+GGG | - | chr4.1:73616284-73616303 | None:intergenic | 50.0% | |
GTCCTCAGTTGCAGCTTATC+CGG | + | chr4.1:73616378-73616397 | MS.gene059192:CDS | 50.0% | |
TACCGGATAAGCTGCAACTG+AGG | - | chr4.1:73616383-73616402 | None:intergenic | 50.0% | |
TGATATCTGCTCAGGCAGCT+AGG | + | chr4.1:73616157-73616176 | MS.gene059192:CDS | 50.0% | |
TGTCAAACTGGTGATTGCGG+TGG | + | chr4.1:73616354-73616373 | MS.gene059192:CDS | 50.0% | |
! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.1:73616400-73616419 | None:intergenic | 50.0% |
! | CATCGAAGGTGCAACCAGTT+CGG | - | chr4.1:73616317-73616336 | None:intergenic | 50.0% |
CCAAGGTCAAACATGGGCTC+TGG | + | chr4.1:73616254-73616273 | MS.gene059192:CDS | 55.0% | |
CCAGAGCCCATGTTTGACCT+TGG | - | chr4.1:73616257-73616276 | None:intergenic | 55.0% | |
CGAACTGGTTGCACCTTCGA+TGG | + | chr4.1:73616315-73616334 | MS.gene059192:CDS | 55.0% | |
CGACCTGATGAAGTTCCAGC+TGG | - | chr4.1:73616285-73616304 | None:intergenic | 55.0% | |
GGTTGCACCTTCGATGGTTC+AGG | + | chr4.1:73616321-73616340 | MS.gene059192:CDS | 55.0% | |
AACTGCCGACCTCCACCACT+GGG | - | chr4.1:73616231-73616250 | None:intergenic | 60.0% | |
ACCAATGCGGCTACACCGTG+TGG | + | chr4.1:73616193-73616212 | MS.gene059192:CDS | 60.0% | |
! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.1:73616300-73616319 | MS.gene059192:CDS | 60.0% |
CAACTGCCGACCTCCACCAC+TGG | - | chr4.1:73616232-73616251 | None:intergenic | 65.0% | |
GCCACACGGTGTAGCCGCAT+TGG | - | chr4.1:73616197-73616216 | None:intergenic | 65.0% | |
GGAGGTCGGCAGTTGGACCA+AGG | + | chr4.1:73616237-73616256 | MS.gene059192:CDS | 65.0% | |
! | CAGTGGTGGAGGTCGGCAGT+TGG | + | chr4.1:73616230-73616249 | MS.gene059192:CDS | 65.0% |
! | CCACACCCAGTGGTGGAGGT+CGG | + | chr4.1:73616223-73616242 | MS.gene059192:CDS | 65.0% |
!! | TGGGCTCTGGACATCCCAGC+TGG | + | chr4.1:73616267-73616286 | MS.gene059192:CDS | 65.0% |
CCGACCTCCACCACTGGGTG+TGG | - | chr4.1:73616226-73616245 | None:intergenic | 70.0% | |
CGGCTACACCGTGTGGCCAG+CGG | + | chr4.1:73616200-73616219 | MS.gene059192:CDS | 70.0% | |
CCACCACTGGGTGTGGCCGC+TGG | - | chr4.1:73616219-73616238 | None:intergenic | 75.0% | |
CCAGCGGCCACACCCAGTGG+TGG | + | chr4.1:73616216-73616235 | MS.gene059192:CDS | 75.0% | |
GCGGCCACACCCAGTGGTGG+AGG | + | chr4.1:73616219-73616238 | MS.gene059192:CDS | 75.0% | |
GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.1:73616211-73616230 | None:intergenic | 75.0% | |
TGGCCAGCGGCCACACCCAG+TGG | + | chr4.1:73616213-73616232 | MS.gene059192:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 73616111 | 73616641 | 73616111 | ID=MS.gene059192 |
chr4.1 | mRNA | 73616111 | 73616641 | 73616111 | ID=MS.gene059192.t1;Parent=MS.gene059192 |
chr4.1 | exon | 73616111 | 73616641 | 73616111 | ID=MS.gene059192.t1.exon1;Parent=MS.gene059192.t1 |
chr4.1 | CDS | 73616111 | 73616641 | 73616111 | ID=cds.MS.gene059192.t1;Parent=MS.gene059192.t1 |
Gene Sequence |
Protein sequence |