Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059188.t1 | XP_013447002.1 | 88.6 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 1.00E-84 | 322.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059188.t1 | P31110 | 60.6 | 165 | 59 | 3 | 13 | 176 | 18 | 177 | 6.6e-53 | 208.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059188.t1 | A0A072TU31 | 88.6 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 7.2e-85 | 322.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059188 | MS.gene059189 | 0.998655 | 6.88E-272 | -1.69E-46 |
MS.gene059188 | MS.gene059191 | 0.968367 | 1.41E-128 | -1.69E-46 |
MS.gene059188 | MS.gene059192 | 0.974724 | 1.16E-138 | -1.69E-46 |
MS.gene059188 | MS.gene45813 | 0.894613 | 2.09E-75 | -1.69E-46 |
MS.gene059188 | MS.gene45815 | 0.956439 | 2.94E-114 | -1.69E-46 |
MS.gene059188 | MS.gene45816 | 0.877177 | 7.74E-69 | -1.69E-46 |
MS.gene059188 | MS.gene45818 | 0.881594 | 2.11E-70 | -1.69E-46 |
MS.gene059188 | MS.gene45820 | 0.964031 | 8.11E-123 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059188.t1 | MTR_8g096920 | 88.636 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 3.10e-111 | 314 |
MS.gene059188.t1 | MTR_8g096910 | 80.114 | 176 | 35 | 0 | 1 | 176 | 1 | 176 | 2.62e-106 | 301 |
MS.gene059188.t1 | MTR_8g096900 | 47.748 | 222 | 68 | 4 | 2 | 176 | 28 | 248 | 9.33e-62 | 191 |
MS.gene059188.t1 | MTR_5g010635 | 44.660 | 206 | 65 | 3 | 19 | 176 | 21 | 225 | 7.29e-49 | 158 |
MS.gene059188.t1 | MTR_5g010640 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 1.45e-46 | 152 |
MS.gene059188.t1 | MTR_2g067990 | 41.206 | 199 | 72 | 7 | 21 | 176 | 26 | 222 | 8.61e-34 | 126 |
MS.gene059188.t1 | MTR_5g059200 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 2.86e-28 | 106 |
MS.gene059188.t1 | MTR_4g073720 | 41.420 | 169 | 75 | 9 | 1 | 150 | 1 | 164 | 6.76e-28 | 107 |
MS.gene059188.t1 | MTR_6g079580 | 37.857 | 140 | 76 | 4 | 1 | 132 | 1 | 137 | 8.58e-28 | 104 |
MS.gene059188.t1 | MTR_7g062610 | 39.623 | 159 | 81 | 6 | 1 | 149 | 1 | 154 | 8.82e-27 | 102 |
MS.gene059188.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 1.22e-26 | 101 |
MS.gene059188.t1 | MTR_5g022350 | 33.333 | 234 | 92 | 11 | 3 | 176 | 14 | 243 | 2.78e-26 | 102 |
MS.gene059188.t1 | MTR_1g021945 | 47.200 | 125 | 56 | 3 | 19 | 134 | 23 | 146 | 3.35e-26 | 100 |
MS.gene059188.t1 | MTR_5g022350 | 44.928 | 138 | 65 | 8 | 6 | 137 | 82 | 214 | 8.10e-26 | 99.0 |
MS.gene059188.t1 | MTR_4g073730 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 2.03e-25 | 99.4 |
MS.gene059188.t1 | MTR_2g067980 | 35.683 | 227 | 73 | 10 | 21 | 176 | 23 | 247 | 2.52e-25 | 102 |
MS.gene059188.t1 | MTR_4g073730 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 2.57e-25 | 99.8 |
MS.gene059188.t1 | MTR_8g075510 | 40.741 | 162 | 75 | 8 | 1 | 143 | 4 | 163 | 5.04e-25 | 97.4 |
MS.gene059188.t1 | MTR_8g075510 | 41.497 | 147 | 68 | 8 | 17 | 150 | 26 | 167 | 9.95e-25 | 97.8 |
MS.gene059188.t1 | MTR_8g037890 | 40.714 | 140 | 72 | 5 | 2 | 132 | 7 | 144 | 1.54e-24 | 97.4 |
MS.gene059188.t1 | MTR_3g111620 | 40.816 | 147 | 68 | 5 | 19 | 150 | 24 | 166 | 1.97e-24 | 95.9 |
MS.gene059188.t1 | MTR_8g036215 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 3.22e-24 | 95.1 |
MS.gene059188.t1 | MTR_1g025420 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 3.95e-24 | 95.5 |
MS.gene059188.t1 | MTR_8g075550 | 39.181 | 171 | 80 | 7 | 21 | 175 | 27 | 189 | 1.10e-23 | 95.1 |
MS.gene059188.t1 | MTR_1g025420 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 1.13e-23 | 95.1 |
MS.gene059188.t1 | MTR_5g022310 | 37.107 | 159 | 80 | 6 | 3 | 143 | 8 | 164 | 1.45e-23 | 93.6 |
MS.gene059188.t1 | MTR_5g022310 | 36.747 | 166 | 82 | 7 | 3 | 150 | 8 | 168 | 3.03e-23 | 93.6 |
MS.gene059188.t1 | MTR_2g069660 | 31.148 | 244 | 99 | 8 | 1 | 176 | 1 | 243 | 8.25e-23 | 91.7 |
MS.gene059188.t1 | MTR_8g056820 | 39.855 | 138 | 72 | 5 | 4 | 131 | 7 | 143 | 1.17e-22 | 91.3 |
MS.gene059188.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 23 | 149 | 29 | 160 | 4.61e-22 | 89.7 |
MS.gene059188.t1 | MTR_3g114030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 9 | 122 | 5.45e-22 | 89.4 |
MS.gene059188.t1 | MTR_2g068030 | 42.623 | 122 | 58 | 5 | 21 | 131 | 22 | 142 | 2.21e-21 | 87.8 |
MS.gene059188.t1 | MTR_1g062630 | 35.714 | 154 | 87 | 7 | 1 | 144 | 1 | 152 | 4.39e-21 | 87.4 |
MS.gene059188.t1 | MTR_2g068655 | 37.126 | 167 | 83 | 7 | 19 | 167 | 28 | 190 | 1.65e-20 | 86.7 |
MS.gene059188.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 2.23e-20 | 85.5 |
MS.gene059188.t1 | MTR_1g062350 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 2.51e-20 | 85.1 |
MS.gene059188.t1 | MTR_7g102380 | 37.956 | 137 | 68 | 7 | 10 | 131 | 3 | 137 | 4.12e-20 | 84.3 |
MS.gene059188.t1 | MTR_1g062590 | 33.962 | 159 | 90 | 6 | 1 | 150 | 1 | 153 | 4.45e-20 | 84.3 |
MS.gene059188.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 5.55e-20 | 84.3 |
MS.gene059188.t1 | MTR_1g062370 | 32.432 | 185 | 92 | 7 | 1 | 176 | 1 | 161 | 8.27e-20 | 83.6 |
MS.gene059188.t1 | MTR_1g062340 | 35.714 | 140 | 79 | 5 | 1 | 131 | 1 | 138 | 3.72e-19 | 81.6 |
MS.gene059188.t1 | MTR_5g023850 | 32.039 | 206 | 101 | 9 | 8 | 176 | 13 | 216 | 1.14e-18 | 80.1 |
MS.gene059188.t1 | MTR_1g062660 | 31.351 | 185 | 94 | 7 | 1 | 176 | 1 | 161 | 5.16e-18 | 79.0 |
MS.gene059188.t1 | MTR_1g062690 | 29.348 | 184 | 75 | 7 | 1 | 176 | 1 | 137 | 3.10e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059188.t1 | AT4G11650 | 44.643 | 224 | 75 | 4 | 1 | 176 | 1 | 223 | 9.42e-55 | 173 |
MS.gene059188.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.42e-33 | 121 |
MS.gene059188.t1 | AT1G77700 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 2.17e-33 | 120 |
MS.gene059188.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 2.36e-33 | 121 |
MS.gene059188.t1 | AT1G75050 | 46.324 | 136 | 66 | 2 | 2 | 131 | 5 | 139 | 1.92e-30 | 111 |
MS.gene059188.t1 | AT1G75030 | 44.203 | 138 | 68 | 4 | 1 | 131 | 4 | 139 | 7.68e-28 | 104 |
MS.gene059188.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 2.61e-26 | 102 |
MS.gene059188.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 2.61e-26 | 102 |
MS.gene059188.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 3.52e-26 | 100 |
MS.gene059188.t1 | AT1G73620 | 44.628 | 121 | 56 | 4 | 19 | 131 | 39 | 156 | 5.15e-26 | 100 |
MS.gene059188.t1 | AT4G38660 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 7.66e-26 | 101 |
MS.gene059188.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 8.49e-26 | 99.4 |
MS.gene059188.t1 | AT1G75040 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 8.51e-26 | 99.4 |
MS.gene059188.t1 | AT4G38660 | 43.056 | 144 | 64 | 6 | 16 | 143 | 2 | 143 | 1.91e-25 | 100 |
MS.gene059188.t1 | AT1G75800 | 38.994 | 159 | 83 | 6 | 1 | 149 | 1 | 155 | 2.65e-25 | 99.8 |
MS.gene059188.t1 | AT2G17860 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 1.59e-24 | 96.3 |
MS.gene059188.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 5.40e-24 | 97.4 |
MS.gene059188.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 6.52e-24 | 97.4 |
MS.gene059188.t1 | AT4G38670 | 42.254 | 142 | 69 | 6 | 1 | 131 | 2 | 141 | 7.30e-24 | 95.1 |
MS.gene059188.t1 | AT4G38670 | 42.254 | 142 | 69 | 6 | 1 | 131 | 2 | 141 | 7.30e-24 | 95.1 |
MS.gene059188.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 7.47e-24 | 97.4 |
MS.gene059188.t1 | AT1G19320 | 39.716 | 141 | 71 | 6 | 3 | 132 | 9 | 146 | 4.23e-23 | 92.4 |
MS.gene059188.t1 | AT5G40020 | 32.778 | 180 | 95 | 8 | 1 | 158 | 1 | 176 | 1.91e-22 | 90.9 |
MS.gene059188.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 2.06e-22 | 93.6 |
MS.gene059188.t1 | AT4G38670 | 44.094 | 127 | 58 | 6 | 16 | 131 | 1 | 125 | 2.36e-22 | 90.9 |
MS.gene059188.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 2.38e-22 | 93.6 |
MS.gene059188.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 3.94e-22 | 89.7 |
MS.gene059188.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 4.64e-22 | 90.5 |
MS.gene059188.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 5.56e-22 | 89.7 |
MS.gene059188.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 9.02e-22 | 90.1 |
MS.gene059188.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 1.21e-21 | 89.7 |
MS.gene059188.t1 | AT1G20030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 5 | 118 | 1.29e-21 | 89.4 |
MS.gene059188.t1 | AT1G20030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 22 | 135 | 1.60e-21 | 89.4 |
MS.gene059188.t1 | AT2G28790 | 34.706 | 170 | 89 | 9 | 1 | 150 | 26 | 193 | 6.63e-20 | 84.3 |
MS.gene059188.t1 | AT2G28790 | 34.969 | 163 | 87 | 8 | 1 | 146 | 1 | 161 | 7.49e-20 | 84.0 |
MS.gene059188.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 2.46e-19 | 82.4 |
MS.gene059188.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 4.11e-19 | 82.8 |
MS.gene059188.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 6.07e-19 | 82.4 |
MS.gene059188.t1 | AT1G70250 | 34.074 | 135 | 79 | 5 | 24 | 150 | 147 | 279 | 4.36e-16 | 75.5 |
MS.gene059188.t1 | AT4G18250 | 27.570 | 214 | 90 | 10 | 26 | 176 | 61 | 272 | 5.82e-11 | 60.5 |
Find 58 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.1:+73714541 | MS.gene059188:CDS |
ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.1:+73714683 | MS.gene059188:CDS |
AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.1:+73714542 | MS.gene059188:CDS |
TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.1:-73714763 | None:intergenic |
CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.1:+73714750 | MS.gene059188:CDS |
AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.1:-73714649 | None:intergenic |
ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.1:+73714711 | MS.gene059188:CDS |
CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.1:-73714468 | None:intergenic |
CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4.1:-73714481 | None:intergenic |
TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.1:-73714673 | None:intergenic |
GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4.1:+73714573 | MS.gene059188:CDS |
GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.1:+73714594 | MS.gene059188:CDS |
CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.1:+73714669 | MS.gene059188:CDS |
GTCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.1:+73714630 | MS.gene059188:CDS |
TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.1:-73714810 | None:intergenic |
GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.1:+73714552 | MS.gene059188:CDS |
ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.1:-73714865 | None:intergenic |
ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.1:+73714531 | MS.gene059188:CDS |
GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.1:-73714744 | None:intergenic |
GCCACACGGTGTAGCCGCAT+TGG | 0.474171 | 4.1:-73714446 | None:intergenic |
CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4.1:-73714475 | None:intergenic |
TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.1:+73714409 | MS.gene059188:CDS |
AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4.1:-73714480 | None:intergenic |
CCAGAGTCCATGTTTGACCT+TGG | 0.495410 | 4.1:-73714506 | None:intergenic |
CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4.1:-73714566 | None:intergenic |
CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.1:-73714534 | None:intergenic |
ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.1:-73714855 | None:intergenic |
CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4.1:+73714567 | MS.gene059188:CDS |
TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.1:+73714401 | MS.gene059188:CDS |
GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4.1:+73714471 | MS.gene059188:CDS |
GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.1:+73714775 | MS.gene059188:CDS |
ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4.1:+73714579 | MS.gene059188:CDS |
GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.1:-73714460 | None:intergenic |
TGGACTCTGGACATCCCAGC+TGG | 0.517689 | 4.1:+73714519 | MS.gene059188:CDS |
CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4.1:+73714482 | MS.gene059188:CDS |
CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.1:+73714468 | MS.gene059188:CDS |
CCAAGGTCAAACATGGACTC+TGG | 0.568915 | 4.1:+73714506 | MS.gene059188:CDS |
CGGCTACACCGTGTGGCCAG+CGG | 0.572344 | 4.1:+73714452 | MS.gene059188:CDS |
CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4.1:+73714475 | MS.gene059188:CDS |
TACCGGATAAGCTGCAACTG+AGG | 0.596730 | 4.1:-73714632 | None:intergenic |
ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4.1:-73714580 | None:intergenic |
TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.1:+73714465 | MS.gene059188:CDS |
GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.1:+73714837 | MS.gene059188:CDS |
AGTTGGACCAAGGTCAAACA+TGG | 0.621156 | 4.1:+73714499 | MS.gene059188:CDS |
ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.1:+73714543 | MS.gene059188:CDS |
ACCAATGCGGCTACACCGTG+TGG | 0.625115 | 4.1:+73714445 | MS.gene059188:CDS |
GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4.1:+73714489 | MS.gene059188:CDS |
GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.1:-73714533 | None:intergenic |
GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.1:-73714660 | None:intergenic |
TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.1:-73714809 | None:intergenic |
TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.1:+73714774 | MS.gene059188:CDS |
CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.1:-73714854 | None:intergenic |
AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.1:+73714603 | MS.gene059188:CDS |
ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.1:+73714672 | MS.gene059188:CDS |
TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.1:+73714606 | MS.gene059188:CDS |
CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.1:+73714776 | MS.gene059188:CDS |
AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.1:+73714840 | MS.gene059188:CDS |
TTTGACATTGTAAACCAATG+CGG | 0.728342 | 4.1:+73714432 | MS.gene059188:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.1:73714711-73714730 | MS.gene059188:CDS | 25.0% |
!!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.1:73714831-73714850 | None:intergenic | 25.0% |
!!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.1:73714832-73714851 | None:intergenic | 25.0% |
ACAAAAGACAACTTTGTAGT+TGG | - | chr4.1:73714868-73714887 | None:intergenic | 30.0% | |
TTTGACATTGTAAACCAATG+CGG | + | chr4.1:73714432-73714451 | MS.gene059188:CDS | 30.0% | |
! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.1:73714774-73714793 | MS.gene059188:CDS | 30.0% |
AACTTCATCAGGTCGAATTT+GGG | + | chr4.1:73714542-73714561 | MS.gene059188:CDS | 35.0% | |
AATTGTCAAACTGGTGATTG+CGG | + | chr4.1:73714603-73714622 | MS.gene059188:CDS | 35.0% | |
ACTTAACGGTGGAAACAATT+TGG | + | chr4.1:73714683-73714702 | MS.gene059188:CDS | 35.0% | |
CAACTTAGTTCAACCTCTAA+TGG | + | chr4.1:73714750-73714769 | MS.gene059188:CDS | 35.0% | |
CTTACCGAATTCACACTTAA+CGG | + | chr4.1:73714669-73714688 | MS.gene059188:CDS | 35.0% | |
TACTTTGTTGCATCCATTAG+AGG | - | chr4.1:73714766-73714785 | None:intergenic | 35.0% | |
! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.1:73714776-73714795 | MS.gene059188:CDS | 35.0% |
! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.1:73714775-73714794 | MS.gene059188:CDS | 35.0% |
ACTTCATCAGGTCGAATTTG+GGG | + | chr4.1:73714543-73714562 | MS.gene059188:CDS | 40.0% | |
GAACTTCATCAGGTCGAATT+TGG | + | chr4.1:73714541-73714560 | MS.gene059188:CDS | 40.0% | |
GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.1:73714747-73714766 | None:intergenic | 40.0% | |
GGCAATGGTAATTGTCAAAC+TGG | + | chr4.1:73714594-73714613 | MS.gene059188:CDS | 40.0% | |
GTTAAAACGAATACATGCCC+AGG | + | chr4.1:73714837-73714856 | MS.gene059188:CDS | 40.0% | |
TCCACCGTTAAGTGTGAATT+CGG | - | chr4.1:73714676-73714695 | None:intergenic | 40.0% | |
!! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.1:73714812-73714831 | None:intergenic | 40.0% |
!! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.1:73714813-73714832 | None:intergenic | 40.0% |
AAAACGAATACATGCCCAGG+TGG | + | chr4.1:73714840-73714859 | MS.gene059188:CDS | 45.0% | |
ACCGAATTCACACTTAACGG+TGG | + | chr4.1:73714672-73714691 | MS.gene059188:CDS | 45.0% | |
AGTTGGACCAAGGTCAAACA+TGG | + | chr4.1:73714499-73714518 | MS.gene059188:CDS | 45.0% | |
GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.1:73714663-73714682 | None:intergenic | 45.0% | |
TCTCTGCTTGATATCTGCTC+AGG | + | chr4.1:73714401-73714420 | MS.gene059188:CDS | 45.0% | |
! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.1:73714858-73714877 | None:intergenic | 45.0% |
! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.1:73714857-73714876 | None:intergenic | 45.0% |
ATCCCAGCTGGAACTTCATC+AGG | + | chr4.1:73714531-73714550 | MS.gene059188:CDS | 50.0% | |
CCAAGGTCAAACATGGACTC+TGG | + | chr4.1:73714506-73714525 | MS.gene059188:CDS | 50.0% | |
CCAGAGTCCATGTTTGACCT+TGG | - | chr4.1:73714509-73714528 | None:intergenic | 50.0% | |
GACCTGATGAAGTTCCAGCT+GGG | - | chr4.1:73714536-73714555 | None:intergenic | 50.0% | |
GTCCTCAGTTGCAGCTTATC+CGG | + | chr4.1:73714630-73714649 | MS.gene059188:CDS | 50.0% | |
TACCGGATAAGCTGCAACTG+AGG | - | chr4.1:73714635-73714654 | None:intergenic | 50.0% | |
TGATATCTGCTCAGGCAGCT+AGG | + | chr4.1:73714409-73714428 | MS.gene059188:CDS | 50.0% | |
TGTCAAACTGGTGATTGCGG+TGG | + | chr4.1:73714606-73714625 | MS.gene059188:CDS | 50.0% | |
! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.1:73714652-73714671 | None:intergenic | 50.0% |
ACCATTGCCTGAACCGTCGA+AGG | - | chr4.1:73714583-73714602 | None:intergenic | 55.0% | |
ACCTTCGACGGTTCAGGCAA+TGG | + | chr4.1:73714579-73714598 | MS.gene059188:CDS | 55.0% | |
CGAACTGGTTGCACCTTCGA+CGG | + | chr4.1:73714567-73714586 | MS.gene059188:CDS | 55.0% | |
CGACCTGATGAAGTTCCAGC+TGG | - | chr4.1:73714537-73714556 | None:intergenic | 55.0% | |
! | CGTCGAAGGTGCAACCAGTT+CGG | - | chr4.1:73714569-73714588 | None:intergenic | 55.0% |
AACTGCCGACCTCCACCACT+GGG | - | chr4.1:73714483-73714502 | None:intergenic | 60.0% | |
ACCAATGCGGCTACACCGTG+TGG | + | chr4.1:73714445-73714464 | MS.gene059188:CDS | 60.0% | |
GGTTGCACCTTCGACGGTTC+AGG | + | chr4.1:73714573-73714592 | MS.gene059188:CDS | 60.0% | |
TGGACTCTGGACATCCCAGC+TGG | + | chr4.1:73714519-73714538 | MS.gene059188:CDS | 60.0% | |
! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.1:73714552-73714571 | MS.gene059188:CDS | 60.0% |
CAACTGCCGACCTCCACCAC+TGG | - | chr4.1:73714484-73714503 | None:intergenic | 65.0% | |
GCCACACGGTGTAGCCGCAT+TGG | - | chr4.1:73714449-73714468 | None:intergenic | 65.0% | |
GGAGGTCGGCAGTTGGACCA+AGG | + | chr4.1:73714489-73714508 | MS.gene059188:CDS | 65.0% | |
! | CAGTGGTGGAGGTCGGCAGT+TGG | + | chr4.1:73714482-73714501 | MS.gene059188:CDS | 65.0% |
! | CCACACCCAGTGGTGGAGGT+CGG | + | chr4.1:73714475-73714494 | MS.gene059188:CDS | 65.0% |
CCGACCTCCACCACTGGGTG+TGG | - | chr4.1:73714478-73714497 | None:intergenic | 70.0% | |
CGGCTACACCGTGTGGCCAG+CGG | + | chr4.1:73714452-73714471 | MS.gene059188:CDS | 70.0% | |
CCACCACTGGGTGTGGCCGC+TGG | - | chr4.1:73714471-73714490 | None:intergenic | 75.0% | |
CCAGCGGCCACACCCAGTGG+TGG | + | chr4.1:73714468-73714487 | MS.gene059188:CDS | 75.0% | |
GCGGCCACACCCAGTGGTGG+AGG | + | chr4.1:73714471-73714490 | MS.gene059188:CDS | 75.0% | |
GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.1:73714463-73714482 | None:intergenic | 75.0% | |
TGGCCAGCGGCCACACCCAG+TGG | + | chr4.1:73714465-73714484 | MS.gene059188:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 73714363 | 73714893 | 73714363 | ID=MS.gene059188 |
chr4.1 | mRNA | 73714363 | 73714893 | 73714363 | ID=MS.gene059188.t1;Parent=MS.gene059188 |
chr4.1 | exon | 73714363 | 73714893 | 73714363 | ID=MS.gene059188.t1.exon1;Parent=MS.gene059188.t1 |
chr4.1 | CDS | 73714363 | 73714893 | 73714363 | ID=cds.MS.gene059188.t1;Parent=MS.gene059188.t1 |
Gene Sequence |
Protein sequence |